Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037378.t1 | XP_013470391.1 | 92.4 | 354 | 20 | 1 | 1 | 354 | 1 | 347 | 8.50E-184 | 652.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037378.t1 | Q9FIM0 | 26.4 | 212 | 141 | 4 | 6 | 204 | 6 | 215 | 1.8e-12 | 75.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037378.t1 | A0A072VR19 | 92.4 | 354 | 20 | 1 | 1 | 354 | 1 | 347 | 6.1e-184 | 652.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037378.t1 | TF | MADS-M-type |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037378.t1 | MTR_1g114730 | 92.373 | 354 | 20 | 1 | 1 | 354 | 1 | 347 | 0.0 | 661 |
| MS.gene037378.t1 | MTR_6g018920 | 73.315 | 356 | 83 | 2 | 1 | 354 | 1 | 346 | 0.0 | 536 |
| MS.gene037378.t1 | MTR_6g005450 | 61.667 | 360 | 119 | 6 | 1 | 354 | 1 | 347 | 1.26e-147 | 421 |
| MS.gene037378.t1 | MTR_6g005440 | 57.307 | 349 | 108 | 4 | 1 | 349 | 1 | 308 | 3.33e-135 | 388 |
| MS.gene037378.t1 | MTR_4g107170 | 41.935 | 155 | 87 | 1 | 1 | 155 | 1 | 152 | 7.24e-36 | 131 |
| MS.gene037378.t1 | MTR_2g049610 | 43.590 | 156 | 82 | 2 | 1 | 156 | 1 | 150 | 6.33e-34 | 125 |
| MS.gene037378.t1 | MTR_4g045977 | 37.126 | 167 | 102 | 1 | 1 | 167 | 1 | 164 | 9.86e-31 | 120 |
| MS.gene037378.t1 | MTR_2g049530 | 38.365 | 159 | 93 | 2 | 3 | 160 | 5 | 159 | 2.92e-29 | 112 |
| MS.gene037378.t1 | MTR_2g049630 | 36.872 | 179 | 108 | 2 | 2 | 179 | 4 | 178 | 3.33e-28 | 113 |
| MS.gene037378.t1 | MTR_0061s0010 | 42.553 | 141 | 20 | 3 | 29 | 169 | 1 | 80 | 2.92e-22 | 91.7 |
| MS.gene037378.t1 | MTR_1g115290 | 29.577 | 142 | 99 | 1 | 44 | 185 | 8 | 148 | 1.75e-19 | 84.7 |
| MS.gene037378.t1 | MTR_5g075380 | 34.454 | 119 | 70 | 4 | 1 | 118 | 1 | 112 | 1.43e-15 | 73.9 |
| MS.gene037378.t1 | MTR_3g031100 | 35.294 | 102 | 59 | 3 | 1 | 101 | 1 | 96 | 2.37e-14 | 72.4 |
| MS.gene037378.t1 | MTR_3g102570 | 33.945 | 109 | 64 | 3 | 1 | 109 | 1 | 101 | 3.33e-14 | 72.8 |
| MS.gene037378.t1 | MTR_3g466980 | 23.478 | 230 | 153 | 8 | 1 | 216 | 1 | 221 | 1.55e-13 | 69.3 |
| MS.gene037378.t1 | MTR_4g032620 | 35.897 | 117 | 60 | 4 | 1 | 116 | 1 | 103 | 2.01e-13 | 69.3 |
| MS.gene037378.t1 | MTR_3g031240 | 30.088 | 113 | 72 | 3 | 1 | 112 | 1 | 107 | 3.28e-12 | 65.1 |
| MS.gene037378.t1 | MTR_8g086290 | 30.625 | 160 | 84 | 5 | 2 | 144 | 12 | 161 | 4.20e-12 | 64.3 |
| MS.gene037378.t1 | MTR_3g466890 | 34.188 | 117 | 66 | 5 | 3 | 116 | 2 | 110 | 1.65e-11 | 62.4 |
| MS.gene037378.t1 | MTR_2g017865 | 28.025 | 157 | 98 | 4 | 1 | 154 | 16 | 160 | 2.11e-11 | 63.9 |
| MS.gene037378.t1 | MTR_3g065100 | 25.100 | 251 | 139 | 8 | 1 | 216 | 1 | 237 | 2.68e-11 | 63.5 |
| MS.gene037378.t1 | MTR_2g016210 | 31.481 | 108 | 66 | 4 | 2 | 108 | 3 | 103 | 3.10e-11 | 63.2 |
| MS.gene037378.t1 | MTR_1g090710 | 29.464 | 112 | 66 | 4 | 1 | 105 | 1 | 106 | 4.62e-11 | 60.8 |
| MS.gene037378.t1 | MTR_3g466830 | 30.909 | 110 | 69 | 3 | 3 | 111 | 2 | 105 | 4.81e-11 | 61.2 |
| MS.gene037378.t1 | MTR_3g088615 | 27.922 | 154 | 93 | 4 | 1 | 151 | 1 | 139 | 7.36e-11 | 60.8 |
| MS.gene037378.t1 | MTR_8g087860 | 28.289 | 152 | 100 | 3 | 1 | 152 | 17 | 159 | 9.90e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037378.t1 | AT5G55690 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 2.55e-25 | 103 |
| MS.gene037378.t1 | AT5G55690 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 2.55e-25 | 103 |
| MS.gene037378.t1 | AT5G58890 | 30.380 | 158 | 105 | 3 | 6 | 160 | 6 | 161 | 4.25e-18 | 84.0 |
| MS.gene037378.t1 | AT3G18650 | 34.815 | 135 | 74 | 5 | 16 | 144 | 31 | 157 | 5.15e-15 | 75.9 |
| MS.gene037378.t1 | AT5G23260 | 25.243 | 206 | 133 | 5 | 1 | 202 | 1 | 189 | 6.44e-13 | 68.2 |
| MS.gene037378.t1 | AT1G65330 | 33.333 | 111 | 67 | 4 | 3 | 112 | 2 | 106 | 6.48e-13 | 68.6 |
| MS.gene037378.t1 | AT1G65300 | 33.636 | 110 | 64 | 4 | 5 | 112 | 4 | 106 | 6.91e-13 | 68.6 |
| MS.gene037378.t1 | AT1G22590 | 29.677 | 155 | 98 | 3 | 1 | 150 | 1 | 149 | 8.48e-13 | 66.2 |
| MS.gene037378.t1 | AT3G05860 | 28.934 | 197 | 116 | 7 | 1 | 185 | 1 | 185 | 1.32e-12 | 67.4 |
| MS.gene037378.t1 | AT3G05860 | 38.462 | 78 | 40 | 3 | 1 | 77 | 1 | 71 | 1.42e-12 | 66.6 |
| MS.gene037378.t1 | AT3G05860 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 2.30e-12 | 67.0 |
| MS.gene037378.t1 | AT2G28700 | 27.647 | 170 | 103 | 6 | 1 | 164 | 1 | 156 | 3.08e-12 | 67.4 |
| MS.gene037378.t1 | AT5G23260 | 25.000 | 216 | 130 | 6 | 1 | 202 | 17 | 214 | 5.16e-12 | 65.9 |
| MS.gene037378.t1 | AT5G26650 | 33.333 | 111 | 63 | 4 | 5 | 112 | 3 | 105 | 6.40e-12 | 66.6 |
| MS.gene037378.t1 | AT5G23260 | 23.636 | 220 | 133 | 5 | 1 | 202 | 1 | 203 | 1.40e-11 | 64.3 |
| MS.gene037378.t1 | AT5G23260 | 23.636 | 220 | 133 | 5 | 1 | 202 | 17 | 219 | 2.51e-11 | 63.9 |
| MS.gene037378.t1 | AT2G40210 | 31.731 | 104 | 64 | 3 | 1 | 103 | 1 | 98 | 2.79e-11 | 64.7 |
| MS.gene037378.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 3.41e-11 | 64.3 |
| MS.gene037378.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 3.41e-11 | 64.3 |
| MS.gene037378.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 3.41e-11 | 64.3 |
| MS.gene037378.t1 | AT5G27960 | 31.193 | 109 | 68 | 4 | 5 | 112 | 3 | 105 | 4.00e-11 | 63.9 |
| MS.gene037378.t1 | AT2G03060 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 4.72e-11 | 63.9 |
| MS.gene037378.t1 | AT5G13790 | 31.967 | 122 | 74 | 3 | 1 | 122 | 1 | 113 | 7.22e-11 | 62.4 |
| MS.gene037378.t1 | AT4G09960 | 27.215 | 158 | 98 | 5 | 1 | 154 | 11 | 155 | 9.36e-11 | 62.0 |
Find 81 sgRNAs with CRISPR-Local
Find 92 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCCTTTCCATATTGATTT+TGG | 0.055519 | 1.3:+77719260 | None:intergenic |
| CAACATGGATTTCAACTTAA+TGG | 0.148999 | 1.3:-77719120 | MS.gene037378:CDS |
| TTGTCCTTAGGCCATGTTTC+AGG | 0.193367 | 1.3:+77719930 | None:intergenic |
| TTGATGTTAATGGGGCTAAT+TGG | 0.199081 | 1.3:-77719347 | MS.gene037378:CDS |
| TACAAGAATATTGATGTTAA+TGG | 0.237026 | 1.3:-77719357 | MS.gene037378:CDS |
| AAATCCTCGACCTACAAAAT+TGG | 0.237707 | 1.3:+77719959 | None:intergenic |
| GCATTTCCATTGTAATAGTA+TGG | 0.257144 | 1.3:+77719207 | None:intergenic |
| ATGAAAACCCCTTAGGGTTT+TGG | 0.259063 | 1.3:-77719485 | MS.gene037378:CDS |
| ACTTCCGTGATTTCTCCTTT+TGG | 0.266267 | 1.3:+77720075 | None:intergenic |
| ACAAGAATATTGATGTTAAT+GGG | 0.303821 | 1.3:-77719356 | MS.gene037378:CDS |
| GGTTATCAGGACCGATGCTT+CGG | 0.326389 | 1.3:-77719288 | MS.gene037378:CDS |
| GATATTATTTGCTAGCAAAC+TGG | 0.357133 | 1.3:-77719709 | MS.gene037378:CDS |
| AATGAATCTTTCAATTCTCT+TGG | 0.359377 | 1.3:-77719744 | MS.gene037378:CDS |
| GATTTGAGAGATTCTGAAAA+GGG | 0.362382 | 1.3:+77719145 | None:intergenic |
| GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | 1.3:-77720105 | MS.gene037378:CDS |
| TGATGTTAATGGGGCTAATT+GGG | 0.367522 | 1.3:-77719346 | MS.gene037378:CDS |
| ATTAACATCAATATTCTTGT+AGG | 0.368101 | 1.3:+77719359 | None:intergenic |
| TGGGGCTAATTGGGCCAATC+AGG | 0.372470 | 1.3:-77719337 | MS.gene037378:CDS |
| TCTTGAACATCATAGATCTT+AGG | 0.373714 | 1.3:+77719852 | None:intergenic |
| ATGGTGCGAGCTTTGTATAT+TGG | 0.377737 | 1.3:+77719419 | None:intergenic |
| CGGGCTTCCCAAAATCAATA+TGG | 0.380849 | 1.3:-77719268 | MS.gene037378:CDS |
| ATCATTAGCATTAACCTGAT+TGG | 0.383785 | 1.3:+77719323 | None:intergenic |
| GTTATCAGGACCGATGCTTC+GGG | 0.385864 | 1.3:-77719287 | MS.gene037378:CDS |
| TATGCTAAAAGAAGATCATA+AGG | 0.417664 | 1.3:-77719652 | MS.gene037378:CDS |
| ATTAGTGATGAAAACCCCTT+AGG | 0.421326 | 1.3:-77719492 | MS.gene037378:CDS |
| TCATCACTAATATTCATCAT+TGG | 0.425152 | 1.3:+77719504 | None:intergenic |
| AAGGAAGGATGGAGCTGAAA+AGG | 0.426747 | 1.3:-77719244 | MS.gene037378:CDS |
| AACATCAACATCACAAAGAA+TGG | 0.436469 | 1.3:+77720001 | None:intergenic |
| ACTATAACACAACAAATGAT+AGG | 0.448494 | 1.3:-77719878 | MS.gene037378:CDS |
| AGATTTGAGAGATTCTGAAA+AGG | 0.451030 | 1.3:+77719144 | None:intergenic |
| AATCCTCGACCTACAAAATT+GGG | 0.455489 | 1.3:+77719960 | None:intergenic |
| TTAACATCAATATTCTTGTA+GGG | 0.460944 | 1.3:+77719360 | None:intergenic |
| GGGAGAGTGTGCAAGGCAAT+AGG | 0.469982 | 1.3:+77719165 | None:intergenic |
| ATGCTAATGATACCTACAAT+GGG | 0.473473 | 1.3:-77719311 | MS.gene037378:CDS |
| TAGTTTCTCTTTACGCACTT+TGG | 0.478267 | 1.3:+77719788 | None:intergenic |
| CAAGCTCATATGTTCATGAA+TGG | 0.478657 | 1.3:-77719075 | MS.gene037378:CDS |
| ATCTATGGAACTCATCCAAA+AGG | 0.478947 | 1.3:-77720090 | MS.gene037378:CDS |
| GAAGGTTGAGAGCTTTGTCC+CGG | 0.483719 | 1.3:+77719453 | None:intergenic |
| TTGAAAGATTCATTCCAAGT+TGG | 0.490806 | 1.3:+77719753 | None:intergenic |
| ATCAATATGGAAAGGAAGGA+TGG | 0.505258 | 1.3:-77719255 | MS.gene037378:CDS |
| CAAAATCAATATGGAAAGGA+AGG | 0.508161 | 1.3:-77719259 | MS.gene037378:CDS |
| TTAGTGATGAAAACCCCTTA+GGG | 0.508185 | 1.3:-77719491 | MS.gene037378:CDS |
| GTCAACATTTCAAAAGAGAA+AGG | 0.514992 | 1.3:-77720054 | MS.gene037378:CDS |
| TTGAAGTGGCCAAAACCCTA+AGG | 0.517435 | 1.3:+77719476 | None:intergenic |
| TCACTAATATTCATCATTGG+AGG | 0.523765 | 1.3:+77719507 | None:intergenic |
| CTTGGATTTGCGGTCAAGGA+AGG | 0.534446 | 1.3:+77719579 | None:intergenic |
| CTCATATGTTCATGAATGGA+AGG | 0.537554 | 1.3:-77719071 | MS.gene037378:CDS |
| TCGTCACCATACTATTACAA+TGG | 0.539170 | 1.3:-77719213 | MS.gene037378:CDS |
| TAAAGATGATGTATCCAACT+TGG | 0.548629 | 1.3:-77719767 | MS.gene037378:CDS |
| GTAACTTGGATTTGCGGTCA+AGG | 0.551618 | 1.3:+77719575 | None:intergenic |
| ATGAGATTGAAGTAGTAACT+TGG | 0.551706 | 1.3:+77719561 | None:intergenic |
| ATCTTTCAATTCTCTTGGAG+CGG | 0.552140 | 1.3:-77719739 | MS.gene037378:CDS |
| ACTTAATGGATTCAATGCTA+AGG | 0.552446 | 1.3:-77719106 | MS.gene037378:CDS |
| GAAGTAGTAACTTGGATTTG+CGG | 0.553040 | 1.3:+77719569 | None:intergenic |
| ATATTGGAAATCAAAGAAGA+AGG | 0.553651 | 1.3:+77719435 | None:intergenic |
| ATGCTAAAAGAAGATCATAA+GGG | 0.556585 | 1.3:-77719651 | MS.gene037378:CDS |
| ACATTTCAAAAGAGAAAGGA+AGG | 0.560555 | 1.3:-77720050 | MS.gene037378:CDS |
| GAGCTTTGTCCCGGTTGAAG+TGG | 0.560628 | 1.3:+77719462 | None:intergenic |
| AATGCTAATGATACCTACAA+TGG | 0.561788 | 1.3:-77719312 | MS.gene037378:CDS |
| TGAAGTGGCCAAAACCCTAA+GGG | 0.571128 | 1.3:+77719477 | None:intergenic |
| TATTCGTAGAAAATGGGTCG+TGG | 0.573273 | 1.3:-77720119 | None:intergenic |
| TTCCCAAAATCAATATGGAA+AGG | 0.576621 | 1.3:-77719263 | MS.gene037378:CDS |
| CTCGCACCATGTGGAGTCTG+AGG | 0.578924 | 1.3:-77719406 | MS.gene037378:CDS |
| CTGAAAAGGGAGAGTGTGCA+AGG | 0.587535 | 1.3:+77719158 | None:intergenic |
| CACCATGTGGAGTCTGAGGA+GGG | 0.590680 | 1.3:-77719402 | MS.gene037378:CDS |
| TAACATCAATATTCTTGTAG+GGG | 0.591713 | 1.3:+77719361 | None:intergenic |
| TCATCCAAAAGGAGAAATCA+CGG | 0.593512 | 1.3:-77720079 | MS.gene037378:CDS |
| ATATGTTTGTGCTTGAGACA+TGG | 0.597890 | 1.3:+77719530 | None:intergenic |
| CAAGAATATTGATGTTAATG+GGG | 0.607609 | 1.3:-77719355 | MS.gene037378:CDS |
| TGAACCTGAAACATGGCCTA+AGG | 0.608253 | 1.3:-77719934 | MS.gene037378:CDS |
| CTATTACAATGGAAATGCAA+TGG | 0.613734 | 1.3:-77719202 | MS.gene037378:CDS |
| GCACCATGTGGAGTCTGAGG+AGG | 0.614956 | 1.3:-77719403 | MS.gene037378:CDS |
| GATTTGCTGAACCTGAAACA+TGG | 0.621087 | 1.3:-77719941 | MS.gene037378:CDS |
| TACCCTCCTCAGACTCCACA+TGG | 0.630866 | 1.3:+77719400 | None:intergenic |
| GAAGTGGCCAAAACCCTAAG+GGG | 0.646061 | 1.3:+77719478 | None:intergenic |
| AATCTCTCAAATCTACAACA+TGG | 0.661149 | 1.3:-77719135 | MS.gene037378:CDS |
| TATACAAAGCTCGCACCATG+TGG | 0.663687 | 1.3:-77719415 | MS.gene037378:CDS |
| GCTAATGATACCTACAATGG+GGG | 0.667333 | 1.3:-77719309 | MS.gene037378:CDS |
| TGCTAATGATACCTACAATG+GGG | 0.672222 | 1.3:-77719310 | MS.gene037378:CDS |
| ATGGCCTAAGGACAAAAGAG+AGG | 0.693604 | 1.3:-77719922 | MS.gene037378:CDS |
| AATAGCTCATGAATCACACA+AGG | 0.705760 | 1.3:-77719622 | MS.gene037378:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAGAATATTGATGTTAAT+GGG | - | chr1.3:77719816-77719835 | MS.gene037378:CDS | 20.0% |
| !! | ATTAACATCAATATTCTTGT+AGG | + | chr1.3:77719816-77719835 | None:intergenic | 20.0% |
| !! | TACAAGAATATTGATGTTAA+TGG | - | chr1.3:77719815-77719834 | MS.gene037378:CDS | 20.0% |
| !! | TTAACATCAATATTCTTGTA+GGG | + | chr1.3:77719815-77719834 | None:intergenic | 20.0% |
| ! | AATGAATCTTTCAATTCTCT+TGG | - | chr1.3:77719428-77719447 | MS.gene037378:CDS | 25.0% |
| ! | ACTATAACACAACAAATGAT+AGG | - | chr1.3:77719294-77719313 | MS.gene037378:CDS | 25.0% |
| ! | ATATTGGAAATCAAAGAAGA+AGG | + | chr1.3:77719740-77719759 | None:intergenic | 25.0% |
| ! | ATGCTAAAAGAAGATCATAA+GGG | - | chr1.3:77719521-77719540 | MS.gene037378:CDS | 25.0% |
| ! | CAAGAATATTGATGTTAATG+GGG | - | chr1.3:77719817-77719836 | MS.gene037378:CDS | 25.0% |
| ! | TAACATCAATATTCTTGTAG+GGG | + | chr1.3:77719814-77719833 | None:intergenic | 25.0% |
| ! | TATGCTAAAAGAAGATCATA+AGG | - | chr1.3:77719520-77719539 | MS.gene037378:CDS | 25.0% |
| ! | TCATCACTAATATTCATCAT+TGG | + | chr1.3:77719671-77719690 | None:intergenic | 25.0% |
| !! | TTGTGTTATAGTACTTTTGA+AGG | + | chr1.3:77719286-77719305 | None:intergenic | 25.0% |
| !!! | TGATGTTCAAGAGTATTTTA+AGG | - | chr1.3:77719331-77719350 | MS.gene037378:CDS | 25.0% |
| !!! | TTCAAGAGTATTTTAAGGAA+AGG | - | chr1.3:77719336-77719355 | MS.gene037378:CDS | 25.0% |
| !!! | TTCCTTTCCATATTGATTTT+GGG | + | chr1.3:77719914-77719933 | None:intergenic | 25.0% |
| AACATCAACATCACAAAGAA+TGG | + | chr1.3:77719174-77719193 | None:intergenic | 30.0% | |
| AATCTCTCAAATCTACAACA+TGG | - | chr1.3:77720037-77720056 | MS.gene037378:CDS | 30.0% | |
| AATGCTAATGATACCTACAA+TGG | - | chr1.3:77719860-77719879 | MS.gene037378:CDS | 30.0% | |
| ACATTTCAAAAGAGAAAGGA+AGG | - | chr1.3:77719122-77719141 | MS.gene037378:CDS | 30.0% | |
| ATCATTAGCATTAACCTGAT+TGG | + | chr1.3:77719852-77719871 | None:intergenic | 30.0% | |
| ATGAGATTGAAGTAGTAACT+TGG | + | chr1.3:77719614-77719633 | None:intergenic | 30.0% | |
| ATGCTAATGATACCTACAAT+GGG | - | chr1.3:77719861-77719880 | MS.gene037378:CDS | 30.0% | |
| CAAAATCAATATGGAAAGGA+AGG | - | chr1.3:77719913-77719932 | MS.gene037378:CDS | 30.0% | |
| CAACATGGATTTCAACTTAA+TGG | - | chr1.3:77720052-77720071 | MS.gene037378:CDS | 30.0% | |
| CTATTACAATGGAAATGCAA+TGG | - | chr1.3:77719970-77719989 | MS.gene037378:CDS | 30.0% | |
| GCATTTCCATTGTAATAGTA+TGG | + | chr1.3:77719968-77719987 | None:intergenic | 30.0% | |
| GTCAACATTTCAAAAGAGAA+AGG | - | chr1.3:77719118-77719137 | MS.gene037378:CDS | 30.0% | |
| TAAAGATGATGTATCCAACT+TGG | - | chr1.3:77719405-77719424 | MS.gene037378:CDS | 30.0% | |
| TCACTAATATTCATCATTGG+AGG | + | chr1.3:77719668-77719687 | None:intergenic | 30.0% | |
| TCTTGAACATCATAGATCTT+AGG | + | chr1.3:77719323-77719342 | None:intergenic | 30.0% | |
| TTCCCAAAATCAATATGGAA+AGG | - | chr1.3:77719909-77719928 | MS.gene037378:CDS | 30.0% | |
| TTGAAAGATTCATTCCAAGT+TGG | + | chr1.3:77719422-77719441 | None:intergenic | 30.0% | |
| ! | AGATTTGAGAGATTCTGAAA+AGG | + | chr1.3:77720031-77720050 | None:intergenic | 30.0% |
| ! | GATATTATTTGCTAGCAAAC+TGG | - | chr1.3:77719463-77719482 | MS.gene037378:CDS | 30.0% |
| ! | GATTTGAGAGATTCTGAAAA+GGG | + | chr1.3:77720030-77720049 | None:intergenic | 30.0% |
| !! | ACTTAATGGATTCAATGCTA+AGG | - | chr1.3:77720066-77720085 | MS.gene037378:CDS | 30.0% |
| !!! | CTTCCTTTCCATATTGATTT+TGG | + | chr1.3:77719915-77719934 | None:intergenic | 30.0% |
| AAATCCTCGACCTACAAAAT+TGG | + | chr1.3:77719216-77719235 | None:intergenic | 35.0% | |
| AATAGCTCATGAATCACACA+AGG | - | chr1.3:77719550-77719569 | MS.gene037378:CDS | 35.0% | |
| AATCCTCGACCTACAAAATT+GGG | + | chr1.3:77719215-77719234 | None:intergenic | 35.0% | |
| ATATGTTTGTGCTTGAGACA+TGG | + | chr1.3:77719645-77719664 | None:intergenic | 35.0% | |
| ATCAATATGGAAAGGAAGGA+TGG | - | chr1.3:77719917-77719936 | MS.gene037378:CDS | 35.0% | |
| ATCTATGGAACTCATCCAAA+AGG | - | chr1.3:77719082-77719101 | MS.gene037378:CDS | 35.0% | |
| ATCTTTCAATTCTCTTGGAG+CGG | - | chr1.3:77719433-77719452 | MS.gene037378:CDS | 35.0% | |
| ATTAGTGATGAAAACCCCTT+AGG | - | chr1.3:77719680-77719699 | MS.gene037378:CDS | 35.0% | |
| CAAGCTCATATGTTCATGAA+TGG | - | chr1.3:77720097-77720116 | MS.gene037378:CDS | 35.0% | |
| CTCATATGTTCATGAATGGA+AGG | - | chr1.3:77720101-77720120 | MS.gene037378:CDS | 35.0% | |
| GAAGTAGTAACTTGGATTTG+CGG | + | chr1.3:77719606-77719625 | None:intergenic | 35.0% | |
| TAGTTTCTCTTTACGCACTT+TGG | + | chr1.3:77719387-77719406 | None:intergenic | 35.0% | |
| TCATCCAAAAGGAGAAATCA+CGG | - | chr1.3:77719093-77719112 | MS.gene037378:CDS | 35.0% | |
| TCGTCACCATACTATTACAA+TGG | - | chr1.3:77719959-77719978 | MS.gene037378:CDS | 35.0% | |
| TGATGTTAATGGGGCTAATT+GGG | - | chr1.3:77719826-77719845 | MS.gene037378:CDS | 35.0% | |
| TGCTAATGATACCTACAATG+GGG | - | chr1.3:77719862-77719881 | MS.gene037378:CDS | 35.0% | |
| TTAGTGATGAAAACCCCTTA+GGG | - | chr1.3:77719681-77719700 | MS.gene037378:CDS | 35.0% | |
| TTGATGTTAATGGGGCTAAT+TGG | - | chr1.3:77719825-77719844 | MS.gene037378:CDS | 35.0% | |
| GCTAATGATACCTACAATGG+GGG | - | chr1.3:77719863-77719882 | MS.gene037378:CDS | 40.0% | |
| ! | ACTTCCGTGATTTCTCCTTT+TGG | + | chr1.3:77719100-77719119 | None:intergenic | 40.0% |
| ! | ATGAAAACCCCTTAGGGTTT+TGG | - | chr1.3:77719687-77719706 | MS.gene037378:CDS | 40.0% |
| ! | ATGGTGCGAGCTTTGTATAT+TGG | + | chr1.3:77719756-77719775 | None:intergenic | 40.0% |
| ! | CTCTATGCTCCCAATTTTGT+AGG | - | chr1.3:77719203-77719222 | MS.gene037378:CDS | 40.0% |
| !! | GATTTGCTGAACCTGAAACA+TGG | - | chr1.3:77719231-77719250 | MS.gene037378:CDS | 40.0% |
| AAGGAAGGATGGAGCTGAAA+AGG | - | chr1.3:77719928-77719947 | MS.gene037378:CDS | 45.0% | |
| ATGGCCTAAGGACAAAAGAG+AGG | - | chr1.3:77719250-77719269 | MS.gene037378:CDS | 45.0% | |
| CGGGCTTCCCAAAATCAATA+TGG | - | chr1.3:77719904-77719923 | MS.gene037378:CDS | 45.0% | |
| GGGTCGTGGAAGAATATCTA+TGG | - | chr1.3:77719067-77719086 | MS.gene037378:CDS | 45.0% | |
| GTAACTTGGATTTGCGGTCA+AGG | + | chr1.3:77719600-77719619 | None:intergenic | 45.0% | |
| TACCTACAATGGGGGTTATC+AGG | - | chr1.3:77719871-77719890 | MS.gene037378:CDS | 45.0% | |
| TATACAAAGCTCGCACCATG+TGG | - | chr1.3:77719757-77719776 | MS.gene037378:CDS | 45.0% | |
| TGAACCTGAAACATGGCCTA+AGG | - | chr1.3:77719238-77719257 | MS.gene037378:CDS | 45.0% | |
| TGAAGTGGCCAAAACCCTAA+GGG | + | chr1.3:77719698-77719717 | None:intergenic | 45.0% | |
| TTGAAGTGGCCAAAACCCTA+AGG | + | chr1.3:77719699-77719718 | None:intergenic | 45.0% | |
| TTGTCCTTAGGCCATGTTTC+AGG | + | chr1.3:77719245-77719264 | None:intergenic | 45.0% | |
| ! | TGCACCTCTCTTTTGTCCTT+AGG | + | chr1.3:77719257-77719276 | None:intergenic | 45.0% |
| CTTGGATTTGCGGTCAAGGA+AGG | + | chr1.3:77719596-77719615 | None:intergenic | 50.0% | |
| GAAGTGGCCAAAACCCTAAG+GGG | + | chr1.3:77719697-77719716 | None:intergenic | 50.0% | |
| GGTTATCAGGACCGATGCTT+CGG | - | chr1.3:77719884-77719903 | MS.gene037378:CDS | 50.0% | |
| GTCCTGATAACCCCCATTGT+AGG | + | chr1.3:77719876-77719895 | None:intergenic | 50.0% | |
| GTTATCAGGACCGATGCTTC+GGG | - | chr1.3:77719885-77719904 | MS.gene037378:CDS | 50.0% | |
| ! | CTGAAAAGGGAGAGTGTGCA+AGG | + | chr1.3:77720017-77720036 | None:intergenic | 50.0% |
| ! | GAAGGTTGAGAGCTTTGTCC+CGG | + | chr1.3:77719722-77719741 | None:intergenic | 50.0% |
| ! | GCTCCCAATTTTGTAGGTCG+AGG | - | chr1.3:77719209-77719228 | MS.gene037378:CDS | 50.0% |
| !! | AGGGTTTTGGCCACTTCAAC+CGG | - | chr1.3:77719700-77719719 | MS.gene037378:CDS | 50.0% |
| !! | TTTTGGGAAGCCCGAAGCAT+CGG | + | chr1.3:77719898-77719917 | None:intergenic | 50.0% |
| CACCATGTGGAGTCTGAGGA+GGG | - | chr1.3:77719770-77719789 | MS.gene037378:CDS | 55.0% | |
| TACCCTCCTCAGACTCCACA+TGG | + | chr1.3:77719775-77719794 | None:intergenic | 55.0% | |
| TGGGGCTAATTGGGCCAATC+AGG | - | chr1.3:77719835-77719854 | MS.gene037378:CDS | 55.0% | |
| ! | GAGCTTTGTCCCGGTTGAAG+TGG | + | chr1.3:77719713-77719732 | None:intergenic | 55.0% |
| ! | GGGAGAGTGTGCAAGGCAAT+AGG | + | chr1.3:77720010-77720029 | None:intergenic | 55.0% |
| !! | GGGTTTTGGCCACTTCAACC+GGG | - | chr1.3:77719701-77719720 | MS.gene037378:CDS | 55.0% |
| CTCGCACCATGTGGAGTCTG+AGG | - | chr1.3:77719766-77719785 | MS.gene037378:CDS | 60.0% | |
| GCACCATGTGGAGTCTGAGG+AGG | - | chr1.3:77719769-77719788 | MS.gene037378:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 77719065 | 77720129 | 77719065 | ID=MS.gene037378 |
| chr1.3 | mRNA | 77719065 | 77720129 | 77719065 | ID=MS.gene037378.t1;Parent=MS.gene037378 |
| chr1.3 | exon | 77719065 | 77720129 | 77719065 | ID=MS.gene037378.t1.exon1;Parent=MS.gene037378.t1 |
| chr1.3 | CDS | 77719065 | 77720129 | 77719065 | ID=cds.MS.gene037378.t1;Parent=MS.gene037378.t1 |
| Gene Sequence |
| Protein sequence |
