Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037396.t1 | XP_013470410.1 | 98.5 | 205 | 3 | 0 | 3 | 207 | 6 | 210 | 1.00E-75 | 293.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037396.t1 | Q8LDF9 | 62.1 | 169 | 54 | 4 | 4 | 165 | 15 | 180 | 1.3e-26 | 121.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037396.t1 | A0A072VSQ8 | 98.5 | 205 | 3 | 0 | 3 | 207 | 6 | 210 | 7.2e-76 | 293.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037396.t1 | TR | HMG |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037396.t1 | MTR_1g115220 | 98.544 | 206 | 3 | 0 | 2 | 207 | 5 | 210 | 6.84e-146 | 404 |
| MS.gene037396.t1 | MTR_8g018100 | 73.554 | 121 | 14 | 1 | 19 | 139 | 144 | 246 | 5.37e-51 | 165 |
| MS.gene037396.t1 | MTR_3g115580 | 61.798 | 89 | 34 | 0 | 86 | 174 | 32 | 120 | 2.23e-30 | 109 |
| MS.gene037396.t1 | MTR_5g024180 | 49.091 | 110 | 50 | 2 | 83 | 186 | 16 | 125 | 9.71e-28 | 102 |
| MS.gene037396.t1 | MTR_8g073345 | 44.737 | 114 | 58 | 1 | 83 | 191 | 16 | 129 | 3.88e-26 | 98.2 |
| MS.gene037396.t1 | MTR_8g073345 | 45.872 | 109 | 54 | 1 | 83 | 186 | 16 | 124 | 5.82e-26 | 98.2 |
| MS.gene037396.t1 | MTR_7g068280 | 60.811 | 74 | 29 | 0 | 95 | 168 | 47 | 120 | 2.44e-25 | 97.1 |
| MS.gene037396.t1 | MTR_4g094622 | 48.750 | 80 | 41 | 0 | 89 | 168 | 54 | 133 | 1.94e-20 | 84.0 |
| MS.gene037396.t1 | MTR_7g082820 | 51.351 | 74 | 35 | 1 | 95 | 168 | 9 | 81 | 1.82e-18 | 78.6 |
| MS.gene037396.t1 | MTR_5g024180 | 43.023 | 86 | 44 | 2 | 106 | 186 | 3 | 88 | 2.87e-14 | 66.2 |
| MS.gene037396.t1 | MTR_0191s0020 | 29.448 | 163 | 79 | 7 | 2 | 164 | 7 | 133 | 2.89e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037396.t1 | AT5G23420 | 54.167 | 168 | 67 | 5 | 4 | 164 | 15 | 179 | 6.74e-45 | 149 |
| MS.gene037396.t1 | AT4G35570 | 50.000 | 102 | 50 | 1 | 90 | 191 | 25 | 125 | 3.21e-28 | 103 |
| MS.gene037396.t1 | AT4G35570 | 50.000 | 102 | 50 | 1 | 90 | 191 | 25 | 125 | 3.21e-28 | 103 |
| MS.gene037396.t1 | AT2G17560 | 47.170 | 106 | 55 | 1 | 90 | 194 | 25 | 130 | 2.10e-26 | 99.0 |
| MS.gene037396.t1 | AT3G51880 | 47.826 | 115 | 54 | 2 | 94 | 207 | 48 | 157 | 3.48e-26 | 99.8 |
| MS.gene037396.t1 | AT2G17560 | 50.538 | 93 | 45 | 1 | 90 | 181 | 25 | 117 | 1.94e-25 | 96.7 |
| MS.gene037396.t1 | AT2G17560 | 50.538 | 93 | 45 | 1 | 90 | 181 | 25 | 117 | 1.94e-25 | 96.7 |
| MS.gene037396.t1 | AT1G20693 | 55.422 | 83 | 36 | 1 | 87 | 168 | 25 | 107 | 2.16e-25 | 96.7 |
| MS.gene037396.t1 | AT1G20693 | 53.535 | 99 | 42 | 3 | 87 | 182 | 25 | 122 | 2.42e-25 | 96.7 |
| MS.gene037396.t1 | AT1G20693 | 53.535 | 99 | 42 | 3 | 87 | 182 | 25 | 122 | 2.49e-25 | 96.7 |
| MS.gene037396.t1 | AT3G51880 | 47.619 | 105 | 50 | 1 | 94 | 198 | 48 | 147 | 1.18e-24 | 95.9 |
| MS.gene037396.t1 | AT3G51880 | 47.619 | 105 | 50 | 1 | 94 | 198 | 48 | 147 | 1.18e-24 | 95.9 |
| MS.gene037396.t1 | AT3G51880 | 47.619 | 105 | 50 | 1 | 94 | 198 | 48 | 147 | 1.18e-24 | 95.9 |
| MS.gene037396.t1 | AT3G51880 | 52.381 | 84 | 40 | 0 | 94 | 177 | 48 | 131 | 1.22e-24 | 95.1 |
| MS.gene037396.t1 | AT1G20696 | 53.922 | 102 | 43 | 3 | 83 | 182 | 20 | 119 | 2.02e-24 | 94.0 |
| MS.gene037396.t1 | AT1G20696 | 57.333 | 75 | 32 | 0 | 94 | 168 | 30 | 104 | 8.28e-24 | 92.8 |
| MS.gene037396.t1 | AT1G20696 | 57.333 | 75 | 32 | 0 | 94 | 168 | 30 | 104 | 8.30e-24 | 92.0 |
| MS.gene037396.t1 | AT2G34450 | 48.571 | 70 | 36 | 0 | 99 | 168 | 63 | 132 | 8.27e-19 | 79.7 |
| MS.gene037396.t1 | AT2G34450 | 48.571 | 70 | 36 | 0 | 99 | 168 | 63 | 132 | 8.27e-19 | 79.7 |
| MS.gene037396.t1 | AT2G34450 | 48.571 | 70 | 36 | 0 | 99 | 168 | 63 | 132 | 8.27e-19 | 79.7 |
| MS.gene037396.t1 | AT5G23420 | 61.667 | 60 | 22 | 1 | 4 | 62 | 15 | 74 | 3.28e-18 | 78.2 |
| MS.gene037396.t1 | AT2G34450 | 49.296 | 71 | 35 | 1 | 99 | 168 | 63 | 133 | 3.36e-17 | 75.5 |
| MS.gene037396.t1 | AT1G20696 | 46.154 | 78 | 39 | 2 | 107 | 182 | 1 | 77 | 3.63e-12 | 60.8 |
| MS.gene037396.t1 | AT1G20696 | 46.154 | 78 | 39 | 2 | 107 | 182 | 1 | 77 | 3.89e-12 | 60.8 |
Find 46 sgRNAs with CRISPR-Local
Find 96 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGAGAAGAAGCCTTATT+TGG | 0.238707 | 1.3:+78323763 | MS.gene037396:intron |
| CTCTTAACATCCTTTGAATC+AGG | 0.239936 | 1.3:-78323491 | None:intergenic |
| TCAACAACCTTATCCAAATA+AGG | 0.266781 | 1.3:-78323776 | None:intergenic |
| CAAAAGAACCAAATGCAAAA+AGG | 0.273542 | 1.3:+78323266 | MS.gene037396:CDS |
| AGCGAAAGCACTGCCATCTT+TGG | 0.274022 | 1.3:-78322806 | None:intergenic |
| ATGGCAGTGCTTTCGCTAAA+TGG | 0.280098 | 1.3:+78322812 | MS.gene037396:CDS |
| TAAAGTTGGGAAAGGGAAAA+AGG | 0.356731 | 1.3:+78323291 | MS.gene037396:CDS |
| GGTGGACGCTTCGGCGCATT+AGG | 0.374547 | 1.3:-78323322 | None:intergenic |
| GAAGAAGCCTTATTTGGATA+AGG | 0.386677 | 1.3:+78323769 | MS.gene037396:CDS |
| TGCTGCTGCAGGAGAGGTGG+AGG | 0.407036 | 1.3:+78324102 | MS.gene037396:CDS |
| GTTACGAAATGGCAACGAAA+AGG | 0.426485 | 1.3:+78322740 | None:intergenic |
| TTACGAAATGGCAACGAAAA+GGG | 0.447058 | 1.3:+78322741 | None:intergenic |
| AGCTGCTGCTGCAGGAGAGG+TGG | 0.448405 | 1.3:+78324099 | MS.gene037396:CDS |
| AAAGCAGTTGGTGGACGCTT+CGG | 0.448751 | 1.3:-78323331 | None:intergenic |
| GACAAGGAAGCTGCTGCTGC+AGG | 0.462916 | 1.3:+78324091 | MS.gene037396:CDS |
| CTGATTCAAAGGATGTTAAG+AGG | 0.466487 | 1.3:+78323492 | MS.gene037396:CDS |
| TGCATGTCAATGAGTGCAAC+AGG | 0.479421 | 1.3:-78322938 | None:intergenic |
| GGGTTCTGATAAGGAAGATA+AGG | 0.479785 | 1.3:+78324054 | MS.gene037396:CDS |
| AAATAGGTTGGTAAGGAAGC+TGG | 0.492839 | 1.3:+78323607 | MS.gene037396:intron |
| GGATCAAGAGGGTTCTGATA+AGG | 0.494850 | 1.3:+78324045 | MS.gene037396:intron |
| GCCAAAATCAAAATGAATCT+CGG | 0.501868 | 1.3:+78322977 | MS.gene037396:CDS |
| GTTCTCGTTCGTGCCAAAGA+TGG | 0.507354 | 1.3:+78322793 | MS.gene037396:CDS |
| GTAAGGAAGCTGGTGAGAAG+TGG | 0.524391 | 1.3:+78323617 | MS.gene037396:CDS |
| CAGCTTCCTTGTCATCAGAC+TGG | 0.532712 | 1.3:-78324081 | None:intergenic |
| TCTTAACATCCTTTGAATCA+GGG | 0.535919 | 1.3:-78323490 | None:intergenic |
| GGATAAGGTTGTTGAACTGA+AGG | 0.538046 | 1.3:+78323784 | MS.gene037396:CDS |
| GAAGTGGAGGTCTCTGACTG+AGG | 0.540601 | 1.3:+78323633 | MS.gene037396:CDS |
| GGAAGCTAACCCTGATTCAA+AGG | 0.545294 | 1.3:+78323481 | MS.gene037396:CDS |
| ATGAAAACAAAGAAAGCAGT+TGG | 0.548460 | 1.3:-78323343 | None:intergenic |
| GGAAGCTGCTGCTGCAGGAG+AGG | 0.549573 | 1.3:+78324096 | MS.gene037396:CDS |
| AAAACAAAGAAAGCAGTTGG+TGG | 0.566440 | 1.3:-78323340 | None:intergenic |
| AGTTAACTGATGAAGAGTAG+TGG | 0.571245 | 1.3:+78324125 | MS.gene037396:CDS |
| AAAAGGGCTAAAGTTGGGAA+AGG | 0.581404 | 1.3:+78323283 | MS.gene037396:CDS |
| AGCAGCATTATACAATTCCA+TGG | 0.595262 | 1.3:-78323822 | None:intergenic |
| AGGAAGCTGGTGAGAAGTGG+AGG | 0.606568 | 1.3:+78323620 | MS.gene037396:CDS |
| GGCAGAATATGAGAAGGCCA+TGG | 0.615072 | 1.3:+78323805 | MS.gene037396:CDS |
| TGATTCAAAGGATGTTAAGA+GGG | 0.616338 | 1.3:+78323493 | MS.gene037396:CDS |
| AAAGGGCTAAAGTTGGGAAA+GGG | 0.618574 | 1.3:+78323284 | MS.gene037396:CDS |
| GCTGTATGTATAGGATCAAG+AGG | 0.620076 | 1.3:+78324033 | MS.gene037396:intron |
| TGAAGCGGAACGAGAATCGA+CGG | 0.630596 | 1.3:-78322770 | None:intergenic |
| GGCACGAACGAGAACTGAAG+CGG | 0.641201 | 1.3:-78322785 | None:intergenic |
| GGAAGGCCAGTCTGATGACA+AGG | 0.644830 | 1.3:+78324075 | MS.gene037396:CDS |
| TCTGATAAGGAAGATAAGGA+AGG | 0.664708 | 1.3:+78324058 | MS.gene037396:CDS |
| ACTGAAGGCAGAATATGAGA+AGG | 0.674706 | 1.3:+78323799 | MS.gene037396:CDS |
| CTGTATGTATAGGATCAAGA+GGG | 0.690024 | 1.3:+78324034 | MS.gene037396:intron |
| CTGAAGTGAAGAAACCCGAG+AGG | 0.719762 | 1.3:+78323133 | MS.gene037396:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATAATTAGTACTAATTA+GGG | - | chr1.3:78323026-78323045 | None:intergenic | 10.0% |
| !!! | GTATTTGATTTTATTTAATT+TGG | + | chr1.3:78323078-78323097 | MS.gene037396:intron | 10.0% |
| !!! | TTTATTTTTTGAAATATTGT+AGG | + | chr1.3:78323230-78323249 | MS.gene037396:intron | 10.0% |
| !! | AAAAAATCACAAACTAAAAT+TGG | - | chr1.3:78323172-78323191 | None:intergenic | 15.0% |
| !! | AAAAATCACAAACTAAAATT+GGG | - | chr1.3:78323171-78323190 | None:intergenic | 15.0% |
| !! | GATAATAATTAGTACTAATT+AGG | - | chr1.3:78323027-78323046 | None:intergenic | 15.0% |
| !! | TTACTTATATTGTGAAAAAT+AGG | + | chr1.3:78323591-78323610 | MS.gene037396:intron | 15.0% |
| !! | AAAATCACAAACTAAAATTG+GGG | - | chr1.3:78323170-78323189 | None:intergenic | 20.0% |
| !! | TGATATGGTTAAAATTGTTT+AGG | + | chr1.3:78323745-78323764 | MS.gene037396:intron | 20.0% |
| !! | TTATATTGTGAAAAATAGGT+TGG | + | chr1.3:78323595-78323614 | MS.gene037396:intron | 20.0% |
| !!! | TCTGGTTTTTATTAGTATTT+AGG | + | chr1.3:78323195-78323214 | MS.gene037396:intron | 20.0% |
| !!! | TGAGTTTAGAAAGATTTTTA+AGG | + | chr1.3:78323460-78323479 | MS.gene037396:CDS | 20.0% |
| !!! | TGTTTTGATTTGTTTTGATT+TGG | + | chr1.3:78323684-78323703 | MS.gene037396:intron | 20.0% |
| !!! | TTTTCACAATATAAGTAACA+TGG | - | chr1.3:78323589-78323608 | None:intergenic | 20.0% |
| ! | AAAAGAACCAAATGCAAAAA+GGG | + | chr1.3:78323267-78323286 | MS.gene037396:CDS | 25.0% |
| ! | AAATCACAAACTAAAATTGG+GGG | - | chr1.3:78323169-78323188 | None:intergenic | 25.0% |
| ! | GCTGATATAATGTTATGATA+TGG | + | chr1.3:78323730-78323749 | MS.gene037396:intron | 25.0% |
| ! | TGTTTGATTAAGTTATCCAA+GGG | + | chr1.3:78323552-78323571 | MS.gene037396:intron | 25.0% |
| ! | TTGTTTGATTAAGTTATCCA+AGG | + | chr1.3:78323551-78323570 | MS.gene037396:intron | 25.0% |
| !! | GAAAAAGAGTATAAACGAAA+TGG | - | chr1.3:78322863-78322882 | None:intergenic | 25.0% |
| !! | TGTTCTGTTTTGTAATGTTT+TGG | + | chr1.3:78323389-78323408 | MS.gene037396:intron | 25.0% |
| !!! | AGTGAAGCATGTTTTATTTT+GGG | + | chr1.3:78323951-78323970 | MS.gene037396:intron | 25.0% |
| !!! | CTTTCTTTGTTTTCATGTAA+GGG | + | chr1.3:78323350-78323369 | MS.gene037396:intron | 25.0% |
| AAACAAAATTAGAAGCCCAA+AGG | - | chr1.3:78323872-78323891 | None:intergenic | 30.0% | |
| ATGAAAACAAAGAAAGCAGT+TGG | - | chr1.3:78323346-78323365 | None:intergenic | 30.0% | |
| CAAAAGAACCAAATGCAAAA+AGG | + | chr1.3:78323266-78323285 | MS.gene037396:CDS | 30.0% | |
| GCCAAAATCAAAATGAATCT+CGG | + | chr1.3:78322977-78322996 | MS.gene037396:CDS | 30.0% | |
| TCAACAACCTTATCCAAATA+AGG | - | chr1.3:78323779-78323798 | None:intergenic | 30.0% | |
| TCTTAACATCCTTTGAATCA+GGG | - | chr1.3:78323493-78323512 | None:intergenic | 30.0% | |
| TGATTCAAAGGATGTTAAGA+GGG | + | chr1.3:78323493-78323512 | MS.gene037396:CDS | 30.0% | |
| TTTGCTTTCTTTACTTAAGC+TGG | + | chr1.3:78323912-78323931 | MS.gene037396:intron | 30.0% | |
| ! | AAGTGAAGTATGTTTTCCTT+TGG | + | chr1.3:78323853-78323872 | MS.gene037396:intron | 30.0% |
| ! | AGTGAAGTATGTTTTCCTTT+GGG | + | chr1.3:78323854-78323873 | MS.gene037396:intron | 30.0% |
| !! | GATTGGTTTGATTTGTTTCA+GGG | + | chr1.3:78323436-78323455 | MS.gene037396:intron | 30.0% |
| !! | TGATTGGTTTGATTTGTTTC+AGG | + | chr1.3:78323435-78323454 | MS.gene037396:intron | 30.0% |
| !! | TTGTGAAAAATAGGTTGGTA+AGG | + | chr1.3:78323600-78323619 | MS.gene037396:intron | 30.0% |
| !! | TTTGTTTTCATGTAAGGGTT+TGG | + | chr1.3:78323355-78323374 | MS.gene037396:intron | 30.0% |
| !!! | ACCGAGATTCATTTTGATTT+TGG | - | chr1.3:78322981-78323000 | None:intergenic | 30.0% |
| !!! | AGTTTGTGATTTTTTGACTC+TGG | + | chr1.3:78323177-78323196 | MS.gene037396:intron | 30.0% |
| !!! | GAGTGAAGCATGTTTTATTT+TGG | + | chr1.3:78323950-78323969 | MS.gene037396:intron | 30.0% |
| !!! | GCATTTGGTTCTTTTGAATT+TGG | - | chr1.3:78323262-78323281 | None:intergenic | 30.0% |
| !!! | GCTTTCTTTGTTTTCATGTA+AGG | + | chr1.3:78323349-78323368 | MS.gene037396:intron | 30.0% |
| !!! | GTTTTGGTTCTATAGTTTGA+GGG | + | chr1.3:78323405-78323424 | MS.gene037396:intron | 30.0% |
| !!! | TCATTTTGATTTTGGCTTCA+AGG | - | chr1.3:78322973-78322992 | None:intergenic | 30.0% |
| !!! | TGTTTTGGTTCTATAGTTTG+AGG | + | chr1.3:78323404-78323423 | MS.gene037396:intron | 30.0% |
| !!! | TTTTGGTTCTATAGTTTGAG+GGG | + | chr1.3:78323406-78323425 | MS.gene037396:intron | 30.0% |
| AAAACAAAGAAAGCAGTTGG+TGG | - | chr1.3:78323343-78323362 | None:intergenic | 35.0% | |
| AATGCAAAAAGGGCTAAAGT+TGG | + | chr1.3:78323277-78323296 | MS.gene037396:CDS | 35.0% | |
| AGCAGCATTATACAATTCCA+TGG | - | chr1.3:78323825-78323844 | None:intergenic | 35.0% | |
| ATGCAAAAAGGGCTAAAGTT+GGG | + | chr1.3:78323278-78323297 | MS.gene037396:CDS | 35.0% | |
| CATGGTCAATAATAAACCCT+TGG | - | chr1.3:78323571-78323590 | None:intergenic | 35.0% | |
| CTCTTAACATCCTTTGAATC+AGG | - | chr1.3:78323494-78323513 | None:intergenic | 35.0% | |
| CTGATTCAAAGGATGTTAAG+AGG | + | chr1.3:78323492-78323511 | MS.gene037396:CDS | 35.0% | |
| CTGTATGTATAGGATCAAGA+GGG | + | chr1.3:78324034-78324053 | MS.gene037396:intron | 35.0% | |
| TAAAGTTGGGAAAGGGAAAA+AGG | + | chr1.3:78323291-78323310 | MS.gene037396:CDS | 35.0% | |
| TCTGATAAGGAAGATAAGGA+AGG | + | chr1.3:78324058-78324077 | MS.gene037396:CDS | 35.0% | |
| TTTGCTCTCTTTACTTAAGC+TGG | + | chr1.3:78324009-78324028 | MS.gene037396:intron | 35.0% | |
| ! | ACTTTAGCCCTTTTTGCATT+TGG | - | chr1.3:78323277-78323296 | None:intergenic | 35.0% |
| ! | TTTCATGTAAGGGTTTGGTT+TGG | + | chr1.3:78323360-78323379 | MS.gene037396:intron | 35.0% |
| !! | GAAGAAGCCTTATTTGGATA+AGG | + | chr1.3:78323769-78323788 | MS.gene037396:CDS | 35.0% |
| !! | TTAGGAGAAGAAGCCTTATT+TGG | + | chr1.3:78323763-78323782 | MS.gene037396:intron | 35.0% |
| AAAAGGGCTAAAGTTGGGAA+AGG | + | chr1.3:78323283-78323302 | MS.gene037396:CDS | 40.0% | |
| AAAGGGCTAAAGTTGGGAAA+GGG | + | chr1.3:78323284-78323303 | MS.gene037396:CDS | 40.0% | |
| ACTGAAGGCAGAATATGAGA+AGG | + | chr1.3:78323799-78323818 | MS.gene037396:CDS | 40.0% | |
| GCTGTATGTATAGGATCAAG+AGG | + | chr1.3:78324033-78324052 | MS.gene037396:intron | 40.0% | |
| GGATAAGGTTGTTGAACTGA+AGG | + | chr1.3:78323784-78323803 | MS.gene037396:CDS | 40.0% | |
| GTTTGAGGGGTTTAGTTGAT+TGG | + | chr1.3:78323419-78323438 | MS.gene037396:intron | 40.0% | |
| TGGGAAAGGGAAAAAGGTTA+AGG | + | chr1.3:78323297-78323316 | MS.gene037396:CDS | 40.0% | |
| ! | GGGTTCTGATAAGGAAGATA+AGG | + | chr1.3:78324054-78324073 | MS.gene037396:CDS | 40.0% |
| !! | AAATAGGTTGGTAAGGAAGC+TGG | + | chr1.3:78323607-78323626 | MS.gene037396:intron | 40.0% |
| !! | TAAGCTGGTGCTGTATGTAT+AGG | + | chr1.3:78324024-78324043 | MS.gene037396:intron | 40.0% |
| ATGGCAGTGCTTTCGCTAAA+TGG | + | chr1.3:78322812-78322831 | MS.gene037396:CDS | 45.0% | |
| GGAAGCTAACCCTGATTCAA+AGG | + | chr1.3:78323481-78323500 | MS.gene037396:CDS | 45.0% | |
| TGCATGTCAATGAGTGCAAC+AGG | - | chr1.3:78322941-78322960 | None:intergenic | 45.0% | |
| ! | GGATCAAGAGGGTTCTGATA+AGG | + | chr1.3:78324045-78324064 | MS.gene037396:intron | 45.0% |
| ! | GGGGAAATTTTTCACCTCTC+GGG | - | chr1.3:78323150-78323169 | None:intergenic | 45.0% |
| ! | GGGGGAAATTTTTCACCTCT+CGG | - | chr1.3:78323151-78323170 | None:intergenic | 45.0% |
| !! | AAGCTGGTGCTGTATGCATA+GGG | + | chr1.3:78323928-78323947 | MS.gene037396:intron | 45.0% |
| !! | TAAGCTGGTGCTGTATGCAT+AGG | + | chr1.3:78323927-78323946 | MS.gene037396:intron | 45.0% |
| CAGCTTCCTTGTCATCAGAC+TGG | - | chr1.3:78324084-78324103 | None:intergenic | 50.0% | |
| CTGAAGTGAAGAAACCCGAG+AGG | + | chr1.3:78323133-78323152 | MS.gene037396:CDS | 50.0% | |
| GGCAGAATATGAGAAGGCCA+TGG | + | chr1.3:78323805-78323824 | MS.gene037396:CDS | 50.0% | |
| GTAAGGAAGCTGGTGAGAAG+TGG | + | chr1.3:78323617-78323636 | MS.gene037396:CDS | 50.0% | |
| GTTCTCGTTCGTGCCAAAGA+TGG | + | chr1.3:78322793-78322812 | MS.gene037396:CDS | 50.0% | |
| TGAAGCGGAACGAGAATCGA+CGG | - | chr1.3:78322773-78322792 | None:intergenic | 50.0% | |
| !! | AAAGCAGTTGGTGGACGCTT+CGG | - | chr1.3:78323334-78323353 | None:intergenic | 50.0% |
| !! | AGCGAAAGCACTGCCATCTT+TGG | - | chr1.3:78322809-78322828 | None:intergenic | 50.0% |
| AGGAAGCTGGTGAGAAGTGG+AGG | + | chr1.3:78323620-78323639 | MS.gene037396:CDS | 55.0% | |
| GAAGTGGAGGTCTCTGACTG+AGG | + | chr1.3:78323633-78323652 | MS.gene037396:CDS | 55.0% | |
| GGAAGGCCAGTCTGATGACA+AGG | + | chr1.3:78324075-78324094 | MS.gene037396:CDS | 55.0% | |
| GGCACGAACGAGAACTGAAG+CGG | - | chr1.3:78322788-78322807 | None:intergenic | 55.0% | |
| GACAAGGAAGCTGCTGCTGC+AGG | + | chr1.3:78324091-78324110 | MS.gene037396:CDS | 60.0% | |
| AGCTGCTGCTGCAGGAGAGG+TGG | + | chr1.3:78324099-78324118 | MS.gene037396:CDS | 65.0% | |
| GGAAGCTGCTGCTGCAGGAG+AGG | + | chr1.3:78324096-78324115 | MS.gene037396:CDS | 65.0% | |
| GGTGGACGCTTCGGCGCATT+AGG | - | chr1.3:78323325-78323344 | None:intergenic | 65.0% | |
| TGCTGCTGCAGGAGAGGTGG+AGG | + | chr1.3:78324102-78324121 | MS.gene037396:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 78322748 | 78324144 | 78322748 | ID=MS.gene037396 |
| chr1.3 | mRNA | 78322748 | 78324144 | 78322748 | ID=MS.gene037396.t1;Parent=MS.gene037396 |
| chr1.3 | exon | 78322748 | 78322833 | 78322748 | ID=MS.gene037396.t1.exon1;Parent=MS.gene037396.t1 |
| chr1.3 | CDS | 78322748 | 78322833 | 78322748 | ID=cds.MS.gene037396.t1;Parent=MS.gene037396.t1 |
| chr1.3 | exon | 78322916 | 78322998 | 78322916 | ID=MS.gene037396.t1.exon2;Parent=MS.gene037396.t1 |
| chr1.3 | CDS | 78322916 | 78322998 | 78322916 | ID=cds.MS.gene037396.t1;Parent=MS.gene037396.t1 |
| chr1.3 | exon | 78323109 | 78323154 | 78323109 | ID=MS.gene037396.t1.exon3;Parent=MS.gene037396.t1 |
| chr1.3 | CDS | 78323109 | 78323154 | 78323109 | ID=cds.MS.gene037396.t1;Parent=MS.gene037396.t1 |
| chr1.3 | exon | 78323252 | 78323365 | 78323252 | ID=MS.gene037396.t1.exon4;Parent=MS.gene037396.t1 |
| chr1.3 | CDS | 78323252 | 78323365 | 78323252 | ID=cds.MS.gene037396.t1;Parent=MS.gene037396.t1 |
| chr1.3 | exon | 78323457 | 78323514 | 78323457 | ID=MS.gene037396.t1.exon5;Parent=MS.gene037396.t1 |
| chr1.3 | CDS | 78323457 | 78323514 | 78323457 | ID=cds.MS.gene037396.t1;Parent=MS.gene037396.t1 |
| chr1.3 | exon | 78323613 | 78323657 | 78323613 | ID=MS.gene037396.t1.exon6;Parent=MS.gene037396.t1 |
| chr1.3 | CDS | 78323613 | 78323657 | 78323613 | ID=cds.MS.gene037396.t1;Parent=MS.gene037396.t1 |
| chr1.3 | exon | 78323767 | 78323859 | 78323767 | ID=MS.gene037396.t1.exon7;Parent=MS.gene037396.t1 |
| chr1.3 | CDS | 78323767 | 78323859 | 78323767 | ID=cds.MS.gene037396.t1;Parent=MS.gene037396.t1 |
| chr1.3 | exon | 78324046 | 78324144 | 78324046 | ID=MS.gene037396.t1.exon8;Parent=MS.gene037396.t1 |
| chr1.3 | CDS | 78324046 | 78324144 | 78324046 | ID=cds.MS.gene037396.t1;Parent=MS.gene037396.t1 |
| Gene Sequence |
| Protein sequence |
