Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037410.t1 | XP_013470433.1 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 1.10E-140 | 509.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037410.t1 | Q5QMM3 | 53.8 | 277 | 98 | 8 | 5 | 262 | 1 | 266 | 2.1e-66 | 253.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037410.t1 | A0A072VS22 | 97.7 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 8.2e-141 | 509.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037410.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037410.t1 | MTR_1g115315 | 97.727 | 264 | 6 | 0 | 1 | 264 | 1 | 264 | 0.0 | 542 |
| MS.gene037410.t1 | MTR_1g115315 | 96.281 | 242 | 9 | 0 | 1 | 242 | 1 | 242 | 4.78e-177 | 488 |
| MS.gene037410.t1 | MTR_3g115620 | 69.375 | 160 | 44 | 4 | 14 | 168 | 8 | 167 | 2.89e-73 | 223 |
| MS.gene037410.t1 | MTR_7g023810 | 60.753 | 186 | 51 | 5 | 5 | 189 | 1 | 165 | 1.04e-66 | 205 |
| MS.gene037410.t1 | MTR_4g084550 | 36.607 | 112 | 51 | 2 | 69 | 169 | 37 | 139 | 9.52e-18 | 79.0 |
| MS.gene037410.t1 | MTR_2g015000 | 44.615 | 65 | 36 | 0 | 83 | 147 | 53 | 117 | 2.16e-15 | 75.9 |
| MS.gene037410.t1 | MTR_7g025010 | 42.857 | 77 | 40 | 1 | 72 | 144 | 30 | 106 | 2.77e-14 | 72.8 |
| MS.gene037410.t1 | MTR_4g088080 | 41.667 | 72 | 38 | 1 | 71 | 142 | 30 | 97 | 4.70e-13 | 68.2 |
| MS.gene037410.t1 | MTR_8g107210 | 39.506 | 81 | 48 | 1 | 85 | 165 | 96 | 175 | 5.99e-13 | 68.2 |
| MS.gene037410.t1 | MTR_7g060630 | 46.774 | 62 | 33 | 0 | 85 | 146 | 8 | 69 | 1.22e-12 | 65.5 |
| MS.gene037410.t1 | MTR_4g088070 | 42.857 | 63 | 36 | 0 | 82 | 144 | 26 | 88 | 2.86e-12 | 66.2 |
| MS.gene037410.t1 | MTR_4g063735 | 46.667 | 60 | 32 | 0 | 85 | 144 | 25 | 84 | 9.94e-12 | 63.9 |
| MS.gene037410.t1 | MTR_5g081990 | 43.333 | 60 | 34 | 0 | 85 | 144 | 33 | 92 | 1.43e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037410.t1 | AT4G35550 | 53.383 | 266 | 73 | 6 | 20 | 264 | 33 | 268 | 1.81e-85 | 256 |
| MS.gene037410.t1 | AT1G20700 | 52.761 | 163 | 69 | 5 | 10 | 168 | 19 | 177 | 8.27e-53 | 171 |
| MS.gene037410.t1 | AT1G20700 | 52.761 | 163 | 69 | 5 | 10 | 168 | 19 | 177 | 1.03e-52 | 171 |
| MS.gene037410.t1 | AT1G20710 | 52.857 | 140 | 61 | 4 | 23 | 158 | 13 | 151 | 3.49e-34 | 122 |
| MS.gene037410.t1 | AT1G20700 | 63.415 | 82 | 30 | 0 | 75 | 156 | 23 | 104 | 5.14e-34 | 120 |
| MS.gene037410.t1 | AT2G33880 | 44.615 | 65 | 36 | 0 | 82 | 146 | 52 | 116 | 3.42e-15 | 75.1 |
| MS.gene037410.t1 | AT5G45980 | 44.615 | 65 | 36 | 0 | 82 | 146 | 52 | 116 | 3.54e-15 | 74.3 |
| MS.gene037410.t1 | AT2G33880 | 45.312 | 64 | 35 | 0 | 83 | 146 | 53 | 116 | 3.67e-15 | 74.7 |
| MS.gene037410.t1 | AT3G18010 | 46.667 | 60 | 32 | 0 | 85 | 144 | 76 | 135 | 2.83e-13 | 69.3 |
| MS.gene037410.t1 | AT3G11260 | 48.333 | 60 | 31 | 0 | 85 | 144 | 24 | 83 | 1.30e-12 | 65.1 |
| MS.gene037410.t1 | AT5G05770 | 37.662 | 77 | 48 | 0 | 85 | 161 | 29 | 105 | 1.61e-12 | 63.5 |
| MS.gene037410.t1 | AT2G28610 | 43.548 | 62 | 35 | 0 | 85 | 146 | 8 | 69 | 4.82e-12 | 64.7 |
| MS.gene037410.t1 | AT2G01500 | 45.455 | 55 | 30 | 0 | 85 | 139 | 61 | 115 | 4.77e-11 | 62.0 |
Find 50 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACATTTGTTTCAGAAATT+TGG | 0.112745 | 1.3:-78469043 | None:intergenic |
| TTGATCTAGCACGCCTATTT+TGG | 0.146776 | 1.3:-78469076 | None:intergenic |
| TTTATAATTGGTTCCAAAAT+AGG | 0.153266 | 1.3:+78469063 | MS.gene037410:CDS |
| CTGAAACAAATGTTTATAAT+TGG | 0.206106 | 1.3:+78469051 | MS.gene037410:CDS |
| AGACATGCCACTCAAATTTC+TGG | 0.262992 | 1.3:-78469333 | None:intergenic |
| CCTTTCATCAGGGGTTAGGC+TGG | 0.295215 | 1.3:+78468848 | MS.gene037410:intron |
| CGAATATACGCTCAAGAATC+TGG | 0.304326 | 1.3:-78468953 | None:intergenic |
| AATTGTAGTCCTCTGCTTGC+TGG | 0.362368 | 1.3:-78469948 | None:intergenic |
| CGTATATTCGATCAGGGAAA+TGG | 0.392284 | 1.3:+78468966 | MS.gene037410:CDS |
| GCAAGCAGAGGACTACAATT+TGG | 0.393799 | 1.3:+78469951 | MS.gene037410:CDS |
| TTTCATCAGGGGTTAGGCTG+GGG | 0.399266 | 1.3:+78468850 | MS.gene037410:intron |
| TCTTGAGCGTATATTCGATC+AGG | 0.413169 | 1.3:+78468959 | MS.gene037410:CDS |
| CTTTCATCAGGGGTTAGGCT+GGG | 0.414371 | 1.3:+78468849 | MS.gene037410:intron |
| TCAAGAATCTGGAGCTGAAC+CGG | 0.421307 | 1.3:-78468942 | None:intergenic |
| TTTCAGAAATTTGGCCATGC+TGG | 0.437267 | 1.3:-78469034 | None:intergenic |
| TGTAGGAGTCCACCTCTGTC+TGG | 0.437314 | 1.3:-78468919 | None:intergenic |
| GGTGATGACTGATGAACAAT+TGG | 0.449180 | 1.3:+78467364 | MS.gene037410:CDS |
| TCTCAACAAAATGCTGCTCT+AGG | 0.464326 | 1.3:+78469197 | MS.gene037410:CDS |
| TCTGCTCAACAAGATCTTGC+TGG | 0.471131 | 1.3:+78467458 | MS.gene037410:CDS |
| TGTTGAGAATGAAATTCCTC+TGG | 0.474708 | 1.3:-78469182 | None:intergenic |
| CTCAACAAGCTGTTCACAAA+TGG | 0.485586 | 1.3:-78467420 | None:intergenic |
| TCAGGGAATGACTATCTAGC+TGG | 0.485659 | 1.3:+78469892 | MS.gene037410:intron |
| ACAGAGGTGGACTCCTACAC+CGG | 0.495315 | 1.3:+78468923 | MS.gene037410:CDS |
| CTCAACAAAATGCTGCTCTA+GGG | 0.501777 | 1.3:+78469198 | MS.gene037410:CDS |
| TGTCGAAGCGATGTATGTTA+AGG | 0.503782 | 1.3:+78467343 | MS.gene037410:CDS |
| AGAAACAACAAGTACAGAAT+GGG | 0.518129 | 1.3:+78467318 | MS.gene037410:CDS |
| AGAGAAAATGGTGAACATGA+TGG | 0.521726 | 1.3:+78467289 | None:intergenic |
| GCAGAGGACTACAATTTGGC+AGG | 0.523975 | 1.3:+78469955 | MS.gene037410:CDS |
| TGCGACTCATTGATGACAGC+TGG | 0.529717 | 1.3:+78468882 | MS.gene037410:CDS |
| CAGAAACAACAAGTACAGAA+TGG | 0.532343 | 1.3:+78467317 | MS.gene037410:CDS |
| AACATATTCCGTGTTTCCAT+CGG | 0.539020 | 1.3:+78469292 | MS.gene037410:CDS |
| ACCGCCATCCGATGGAAACA+CGG | 0.553887 | 1.3:-78469300 | None:intergenic |
| AGAGACTGAGGTTGATTCCA+AGG | 0.556104 | 1.3:+78469145 | MS.gene037410:CDS |
| GATCTTATACCGCCATCCGA+TGG | 0.574800 | 1.3:-78469308 | None:intergenic |
| CTTGAGCGTATATTCGATCA+GGG | 0.579984 | 1.3:+78468960 | MS.gene037410:CDS |
| ATCTGGAGCTGAACCGGTGT+AGG | 0.590506 | 1.3:-78468936 | None:intergenic |
| TCCGTGTTTCCATCGGATGG+CGG | 0.595864 | 1.3:+78469299 | MS.gene037410:CDS |
| TATTCCGTGTTTCCATCGGA+TGG | 0.597599 | 1.3:+78469296 | MS.gene037410:CDS |
| GCTACTGAACTCAGCCAGCA+TGG | 0.597739 | 1.3:+78469020 | MS.gene037410:CDS |
| TCAACAAAATGCTGCTCTAG+GGG | 0.599937 | 1.3:+78469199 | MS.gene037410:CDS |
| AACTAGTAACACTGAATCAG+AGG | 0.600354 | 1.3:+78469121 | MS.gene037410:CDS |
| CATGCCACTCAAATTTCTGG+TGG | 0.605707 | 1.3:-78469330 | None:intergenic |
| AAATGGTGAACATGATGGAA+TGG | 0.621193 | 1.3:+78467294 | None:intergenic |
| AAATCACATCCAGACAGAGG+TGG | 0.644627 | 1.3:+78468910 | MS.gene037410:CDS |
| ATGAACAATTGGAAACTCTG+AGG | 0.682721 | 1.3:+78467375 | MS.gene037410:CDS |
| TGAATCAGAGGTAGAGACTG+AGG | 0.683491 | 1.3:+78469133 | MS.gene037410:CDS |
| AGATCCACCAGAAATTTGAG+TGG | 0.687166 | 1.3:+78469326 | MS.gene037410:CDS |
| GGATAAGAAGACAAAACCAG+AGG | 0.688078 | 1.3:+78469166 | MS.gene037410:CDS |
| CAATATATACCAGCAAGCAG+AGG | 0.697674 | 1.3:+78469939 | MS.gene037410:CDS |
| ACAAAATCACATCCAGACAG+AGG | 0.711170 | 1.3:+78468907 | MS.gene037410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAATATAAAAATTAAA+GGG | - | chr1.3:78467528-78467547 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr1.3:78467606-78467587 | None:intergenic | 0.0% |
| !! | ATTACTAAAATTAAAATTGA+AGG | - | chr1.3:78467652-78467671 | None:intergenic | 10.0% |
| !! | TTACTAAAATTAAAATTGAA+GGG | - | chr1.3:78467651-78467670 | None:intergenic | 10.0% |
| !!! | TTTTAAAAAAAAAAAATTGG+GGG | - | chr1.3:78468539-78468558 | None:intergenic | 10.0% |
| !!! | ATTGAATAAACATACATTTT+TGG | + | chr1.3:78468600-78468619 | MS.gene037410:intron | 15.0% |
| !!! | GATTAAATAACAAACATTTT+TGG | + | chr1.3:78468649-78468668 | MS.gene037410:intron | 15.0% |
| !! | AAAAAGAAAAATGCAAAATG+GGG | + | chr1.3:78469097-78469116 | MS.gene037410:CDS | 20.0% |
| !! | AAAATATCAGGAAAAGAATA+TGG | - | chr1.3:78469872-78469891 | None:intergenic | 20.0% |
| !! | AAACATTTGTTTCAGAAATT+TGG | - | chr1.3:78469046-78469065 | None:intergenic | 20.0% |
| !! | AACAGATATGAATGAATAAA+TGG | - | chr1.3:78468016-78468035 | None:intergenic | 20.0% |
| !! | ACAAAGAACTACTAAATATT+TGG | - | chr1.3:78467967-78467986 | None:intergenic | 20.0% |
| !! | ACAGATATGAATGAATAAAT+GGG | - | chr1.3:78468015-78468034 | None:intergenic | 20.0% |
| !! | ACTAATTTGAAGATTTGATT+AGG | + | chr1.3:78469594-78469613 | MS.gene037410:intron | 20.0% |
| !! | ATGAATAAATGGGAATTTAT+AGG | - | chr1.3:78468005-78468024 | None:intergenic | 20.0% |
| !! | CAAAAAGAAAAATGCAAAAT+GGG | + | chr1.3:78469096-78469115 | MS.gene037410:CDS | 20.0% |
| !! | CTGAAACAAATGTTTATAAT+TGG | + | chr1.3:78469051-78469070 | MS.gene037410:CDS | 20.0% |
| !! | TAAGATCATACGAAAAATAT+AGG | - | chr1.3:78469432-78469451 | None:intergenic | 20.0% |
| !! | TCAAAAAGAAAAATGCAAAA+TGG | + | chr1.3:78469095-78469114 | MS.gene037410:CDS | 20.0% |
| !! | TCTTGATATTATATGACAAA+TGG | + | chr1.3:78469555-78469574 | MS.gene037410:intron | 20.0% |
| !!! | AAGGTACATAACTTTTTTTA+GGG | + | chr1.3:78467745-78467764 | MS.gene037410:intron | 20.0% |
| !!! | ACTGTATTTTAGTGTATATT+TGG | - | chr1.3:78467921-78467940 | None:intergenic | 20.0% |
| !!! | ATGCTAGTAAAACATTTTTT+TGG | - | chr1.3:78469784-78469803 | None:intergenic | 20.0% |
| !!! | TAAGGTACATAACTTTTTTT+AGG | + | chr1.3:78467744-78467763 | MS.gene037410:intron | 20.0% |
| !!! | TACATTTTTAGTTGCAAATA+AGG | + | chr1.3:78467726-78467745 | MS.gene037410:intron | 20.0% |
| !!! | TACTAAATATTTGGAATCTT+TGG | - | chr1.3:78467958-78467977 | None:intergenic | 20.0% |
| !!! | TGTGTTTAACATTTTAGTAA+AGG | + | chr1.3:78469729-78469748 | MS.gene037410:intron | 20.0% |
| !!! | TTGTATTGCTTTTCAAAATT+GGG | + | chr1.3:78467552-78467571 | MS.gene037410:intron | 20.0% |
| !!! | TTTATAATTGGTTCCAAAAT+AGG | + | chr1.3:78469063-78469082 | MS.gene037410:CDS | 20.0% |
| !!! | TTTGTATTGCTTTTCAAAAT+TGG | + | chr1.3:78467551-78467570 | MS.gene037410:intron | 20.0% |
| !!! | TTTTTGTTTTTGCATTTAAG+AGG | + | chr1.3:78468564-78468583 | MS.gene037410:intron | 20.0% |
| ! | AAAAGAAAAATGCAAAATGG+GGG | + | chr1.3:78469098-78469117 | MS.gene037410:CDS | 25.0% |
| ! | ACAGAAAACAAAACCATTTA+GGG | + | chr1.3:78468096-78468115 | MS.gene037410:intron | 25.0% |
| ! | ATCTTCAAATTAGTATTCCA+AGG | - | chr1.3:78469588-78469607 | None:intergenic | 25.0% |
| ! | ATTAAAGGGAATTTATGATC+AGG | - | chr1.3:78467514-78467533 | None:intergenic | 25.0% |
| ! | GAAAGAATCTAGTTGAAATT+CGG | + | chr1.3:78469474-78469493 | MS.gene037410:intron | 25.0% |
| ! | GTGTAAAGTTAAATGTTAAG+TGG | + | chr1.3:78468072-78468091 | MS.gene037410:intron | 25.0% |
| ! | GTTAACTTAGTTTAAACTTG+AGG | + | chr1.3:78468440-78468459 | MS.gene037410:intron | 25.0% |
| ! | TAAACTAAGTTAACATCTTG+TGG | - | chr1.3:78468434-78468453 | None:intergenic | 25.0% |
| ! | TATTAATTACAGTGACAATG+TGG | - | chr1.3:78468503-78468522 | None:intergenic | 25.0% |
| ! | TGGTATCATAGTAAATTTAC+CGG | + | chr1.3:78467815-78467834 | MS.gene037410:intron | 25.0% |
| ! | TTAAAGGGAATTTATGATCA+GGG | - | chr1.3:78467513-78467532 | None:intergenic | 25.0% |
| ! | TTACATAGAAAAATCAAACC+TGG | + | chr1.3:78468291-78468310 | MS.gene037410:intron | 25.0% |
| ! | TTAGTGTATATTTGGTATCA+CGG | - | chr1.3:78467913-78467932 | None:intergenic | 25.0% |
| ! | TTTCAACTAGATTCTTTCTA+AGG | - | chr1.3:78469472-78469491 | None:intergenic | 25.0% |
| !! | AATTTGTATCTTTTGGCAAT+TGG | + | chr1.3:78468757-78468776 | MS.gene037410:intron | 25.0% |
| !! | ACAAATTTAGGGGTTTATTT+TGG | + | chr1.3:78469529-78469548 | MS.gene037410:intron | 25.0% |
| !! | TCTTTTCCTGATATTTTTCA+GGG | + | chr1.3:78469875-78469894 | MS.gene037410:intron | 25.0% |
| !! | TTCTTTTCCTGATATTTTTC+AGG | + | chr1.3:78469874-78469893 | MS.gene037410:intron | 25.0% |
| !!! | AGGTTTGATTTTTCTATGTA+AGG | - | chr1.3:78468292-78468311 | None:intergenic | 25.0% |
| !!! | ATTGTCATTTTCTACAAATC+AGG | - | chr1.3:78468234-78468253 | None:intergenic | 25.0% |
| !!! | CATTTTTGGATAAACGATTA+TGG | + | chr1.3:78468614-78468633 | MS.gene037410:intron | 25.0% |
| !!! | GGTTTGATTTTTCTATGTAA+GGG | - | chr1.3:78468291-78468310 | None:intergenic | 25.0% |
| !!! | GTTATTTTTTCCTTTCATCA+GGG | + | chr1.3:78468838-78468857 | MS.gene037410:intron | 25.0% |
| !!! | TGTTATTTTTTCCTTTCATC+AGG | + | chr1.3:78468837-78468856 | MS.gene037410:intron | 25.0% |
| !!! | TTATTTTTTCCTTTCATCAG+GGG | + | chr1.3:78468839-78468858 | MS.gene037410:intron | 25.0% |
| AAAAAAAAAATTGGGGGACA+AGG | - | chr1.3:78468533-78468552 | None:intergenic | 30.0% | |
| AAAACAAAACCATTTAGGGA+AGG | + | chr1.3:78468100-78468119 | MS.gene037410:intron | 30.0% | |
| AAACAAAACCATTTAGGGAA+GGG | + | chr1.3:78468101-78468120 | MS.gene037410:intron | 30.0% | |
| AGAAACAACAAGTACAGAAT+GGG | + | chr1.3:78467318-78467337 | MS.gene037410:CDS | 30.0% | |
| AGCATAACTATAAGTACATG+AGG | + | chr1.3:78468357-78468376 | MS.gene037410:intron | 30.0% | |
| CACAGAAAACAAAACCATTT+AGG | + | chr1.3:78468095-78468114 | MS.gene037410:intron | 30.0% | |
| TACAAGATAAAAAAGCAACC+AGG | - | chr1.3:78468312-78468331 | None:intergenic | 30.0% | |
| TCCAAGCAAAGAAAAAATCA+AGG | + | chr1.3:78468992-78469011 | MS.gene037410:CDS | 30.0% | |
| TGATTATCACTAGAACATGA+TGG | - | chr1.3:78468186-78468205 | None:intergenic | 30.0% | |
| TTGTTGTAGATGTGTATGTT+TGG | + | chr1.3:78467795-78467814 | MS.gene037410:intron | 30.0% | |
| ! | ACCAAGAAGTGTACAAATTT+AGG | + | chr1.3:78469517-78469536 | MS.gene037410:intron | 30.0% |
| ! | CAAGAAGTGTACAAATTTAG+GGG | + | chr1.3:78469519-78469538 | MS.gene037410:intron | 30.0% |
| ! | CCAAGAAGTGTACAAATTTA+GGG | + | chr1.3:78469518-78469537 | MS.gene037410:intron | 30.0% |
| !!! | AATTCCTGCCTTTTTTTTTG+TGG | - | chr1.3:78468741-78468760 | None:intergenic | 30.0% |
| !!! | ATTCCTGCCTTTTTTTTTGT+GGG | - | chr1.3:78468740-78468759 | None:intergenic | 30.0% |
| !!! | TCCTTGATTTTTTCTTTGCT+TGG | - | chr1.3:78468996-78469015 | None:intergenic | 30.0% |
| AACATATTCCGTGTTTCCAT+CGG | + | chr1.3:78469292-78469311 | MS.gene037410:CDS | 35.0% | |
| AACTAGTAACACTGAATCAG+AGG | + | chr1.3:78469121-78469140 | MS.gene037410:CDS | 35.0% | |
| ACAAAACCACCTTCATCTTT+GGG | + | chr1.3:78467611-78467630 | MS.gene037410:intron | 35.0% | |
| ATATCTGTTCTTGTGTCAGT+TGG | + | chr1.3:78468027-78468046 | MS.gene037410:intron | 35.0% | |
| ATGAACAATTGGAAACTCTG+AGG | + | chr1.3:78467375-78467394 | MS.gene037410:CDS | 35.0% | |
| CAGAAACAACAAGTACAGAA+TGG | + | chr1.3:78467317-78467336 | MS.gene037410:CDS | 35.0% | |
| CCCTAAATTTGTACACTTCT+TGG | - | chr1.3:78469521-78469540 | None:intergenic | 35.0% | |
| GTCATTCCCTGAAAAATATC+AGG | - | chr1.3:78469884-78469903 | None:intergenic | 35.0% | |
| TGACAAATGGACATTAACCT+TGG | + | chr1.3:78469568-78469587 | MS.gene037410:intron | 35.0% | |
| TGACTATCTAGCTGGAAAAA+TGG | + | chr1.3:78469900-78469919 | MS.gene037410:CDS | 35.0% | |
| TGTTGAGAATGAAATTCCTC+TGG | - | chr1.3:78469185-78469204 | None:intergenic | 35.0% | |
| TTAAACTTGAGGTTCCTCAA+GGG | + | chr1.3:78468451-78468470 | MS.gene037410:intron | 35.0% | |
| TTTAAACTTGAGGTTCCTCA+AGG | + | chr1.3:78468450-78468469 | MS.gene037410:intron | 35.0% | |
| ! | AAAGCATTCCCTATTACCTA+AGG | + | chr1.3:78468205-78468224 | MS.gene037410:intron | 35.0% |
| ! | ACTTGACAAGTTGAAAGCTT+TGG | - | chr1.3:78468395-78468414 | None:intergenic | 35.0% |
| ! | AGCATTTCTTTAGAGAATGC+TGG | - | chr1.3:78468814-78468833 | None:intergenic | 35.0% |
| ! | AGGCAGGAATTTGTATCTTT+TGG | + | chr1.3:78468750-78468769 | MS.gene037410:intron | 35.0% |
| ! | TTTGAGTCATCGTGATTTTG+AGG | - | chr1.3:78467876-78467895 | None:intergenic | 35.0% |
| !! | CTGGAAAAATGGAAGTATCT+GGG | + | chr1.3:78469911-78469930 | MS.gene037410:CDS | 35.0% |
| !! | GCAATTCAGAGCATTTTTCT+TGG | - | chr1.3:78469247-78469266 | None:intergenic | 35.0% |
| !! | TCAAGAGTACTTCTGATTCT+AGG | - | chr1.3:78468679-78468698 | None:intergenic | 35.0% |
| !!! | TGGTTTTGTCTTCTTATCCT+TGG | - | chr1.3:78469165-78469184 | None:intergenic | 35.0% |
| !!! | TTCCTGCCTTTTTTTTTGTG+GGG | - | chr1.3:78468739-78468758 | None:intergenic | 35.0% |
| AAATTGGTACAAACACCAGC+AGG | + | chr1.3:78468125-78468144 | MS.gene037410:intron | 40.0% | |
| AAGTCAAAGCCCAAAGATGA+AGG | - | chr1.3:78467623-78467642 | None:intergenic | 40.0% | |
| ACAAAATCACATCCAGACAG+AGG | + | chr1.3:78468907-78468926 | MS.gene037410:CDS | 40.0% | |
| AGACATGCCACTCAAATTTC+TGG | - | chr1.3:78469336-78469355 | None:intergenic | 40.0% | |
| AGATCCACCAGAAATTTGAG+TGG | + | chr1.3:78469326-78469345 | MS.gene037410:CDS | 40.0% | |
| ATCAGGATGCCTTAGGTAAT+AGG | - | chr1.3:78468217-78468236 | None:intergenic | 40.0% | |
| CAATATATACCAGCAAGCAG+AGG | + | chr1.3:78469939-78469958 | MS.gene037410:CDS | 40.0% | |
| CACAAAACCACCTTCATCTT+TGG | + | chr1.3:78467610-78467629 | MS.gene037410:intron | 40.0% | |
| CACACATTCATTCCCTCTTT+AGG | - | chr1.3:78468158-78468177 | None:intergenic | 40.0% | |
| CCAATTTACCCTTCCCTAAA+TGG | - | chr1.3:78468112-78468131 | None:intergenic | 40.0% | |
| CCATTTAGGGAAGGGTAAAT+TGG | + | chr1.3:78468109-78468128 | MS.gene037410:intron | 40.0% | |
| CGAATATACGCTCAAGAATC+TGG | - | chr1.3:78468956-78468975 | None:intergenic | 40.0% | |
| CGTATATTCGATCAGGGAAA+TGG | + | chr1.3:78468966-78468985 | MS.gene037410:CDS | 40.0% | |
| CTAAAGAGGGAATGAATGTG+TGG | + | chr1.3:78468156-78468175 | MS.gene037410:intron | 40.0% | |
| CTCAACAAAATGCTGCTCTA+GGG | + | chr1.3:78469198-78469217 | MS.gene037410:CDS | 40.0% | |
| CTCAACAAGCTGTTCACAAA+TGG | - | chr1.3:78467423-78467442 | None:intergenic | 40.0% | |
| CTTACCCCCCACAAAAAAAA+AGG | + | chr1.3:78468730-78468749 | MS.gene037410:intron | 40.0% | |
| CTTGAGCGTATATTCGATCA+GGG | + | chr1.3:78468960-78468979 | MS.gene037410:CDS | 40.0% | |
| GCATCTCTACAAAATCACCA+CGG | - | chr1.3:78467846-78467865 | None:intergenic | 40.0% | |
| GGATAAGAAGACAAAACCAG+AGG | + | chr1.3:78469166-78469185 | MS.gene037410:CDS | 40.0% | |
| GGTGATGACTGATGAACAAT+TGG | + | chr1.3:78467364-78467383 | MS.gene037410:CDS | 40.0% | |
| TAAATTTACCGGTATCACCG+TGG | + | chr1.3:78467826-78467845 | MS.gene037410:intron | 40.0% | |
| TCAACAAAATGCTGCTCTAG+GGG | + | chr1.3:78469199-78469218 | MS.gene037410:CDS | 40.0% | |
| TCAGGATGCCTTAGGTAATA+GGG | - | chr1.3:78468216-78468235 | None:intergenic | 40.0% | |
| TCTACAAATCAGGATGCCTT+AGG | - | chr1.3:78468224-78468243 | None:intergenic | 40.0% | |
| TCTCAACAAAATGCTGCTCT+AGG | + | chr1.3:78469197-78469216 | MS.gene037410:CDS | 40.0% | |
| TCTTGAGCGTATATTCGATC+AGG | + | chr1.3:78468959-78468978 | MS.gene037410:CDS | 40.0% | |
| TGACAATGTGGTCATTTCGA+GGG | - | chr1.3:78468491-78468510 | None:intergenic | 40.0% | |
| TGGAATCTTTGGCGAAATGA+AGG | - | chr1.3:78467947-78467966 | None:intergenic | 40.0% | |
| TGGGGGGTAAGAGAAATATA+AGG | - | chr1.3:78468721-78468740 | None:intergenic | 40.0% | |
| TGTCGAAGCGATGTATGTTA+AGG | + | chr1.3:78467343-78467362 | MS.gene037410:CDS | 40.0% | |
| TTTCAGAAATTTGGCCATGC+TGG | - | chr1.3:78469037-78469056 | None:intergenic | 40.0% | |
| ! | CTCTCACCATTGTAGCTTTT+GGG | + | chr1.3:78469824-78469843 | MS.gene037410:intron | 40.0% |
| ! | TTGATCTAGCACGCCTATTT+TGG | - | chr1.3:78469079-78469098 | None:intergenic | 40.0% |
| ! | TTTTCCTTTCATCAGGGGTT+AGG | + | chr1.3:78468844-78468863 | MS.gene037410:intron | 40.0% |
| !! | ATCTTTGGGCTTTGACTTGT+TGG | + | chr1.3:78467625-78467644 | MS.gene037410:intron | 40.0% |
| !! | CAGAGCATTTTTCTTGGTTC+TGG | - | chr1.3:78469241-78469260 | None:intergenic | 40.0% |
| !! | GCTGGAAAAATGGAAGTATC+TGG | + | chr1.3:78469910-78469929 | MS.gene037410:CDS | 40.0% |
| !!! | TCCTGCCTTTTTTTTTGTGG+GGG | - | chr1.3:78468738-78468757 | None:intergenic | 40.0% |
| AAATCACATCCAGACAGAGG+TGG | + | chr1.3:78468910-78468929 | MS.gene037410:CDS | 45.0% | |
| AATTGTAGTCCTCTGCTTGC+TGG | - | chr1.3:78469951-78469970 | None:intergenic | 45.0% | |
| AGCAGGACTACTTCCTAAAG+AGG | + | chr1.3:78468142-78468161 | MS.gene037410:intron | 45.0% | |
| CAAAATCACCACGGTGATAC+CGG | - | chr1.3:78467837-78467856 | None:intergenic | 45.0% | |
| CCAAAAGCTACAATGGTGAG+AGG | - | chr1.3:78469826-78469845 | None:intergenic | 45.0% | |
| GACAATGTGGTCATTTCGAG+GGG | - | chr1.3:78468490-78468509 | None:intergenic | 45.0% | |
| GCAAGCAGAGGACTACAATT+TGG | + | chr1.3:78469951-78469970 | MS.gene037410:CDS | 45.0% | |
| GCAGGACTACTTCCTAAAGA+GGG | + | chr1.3:78468143-78468162 | MS.gene037410:intron | 45.0% | |
| GTGACAATGTGGTCATTTCG+AGG | - | chr1.3:78468492-78468511 | None:intergenic | 45.0% | |
| TATTCCGTGTTTCCATCGGA+TGG | + | chr1.3:78469296-78469315 | MS.gene037410:CDS | 45.0% | |
| TCAAAGCCCAAAGATGAAGG+TGG | - | chr1.3:78467620-78467639 | None:intergenic | 45.0% | |
| TCAGGGAATGACTATCTAGC+TGG | + | chr1.3:78469892-78469911 | MS.gene037410:intron | 45.0% | |
| TCTGCTCAACAAGATCTTGC+TGG | + | chr1.3:78467458-78467477 | MS.gene037410:CDS | 45.0% | |
| TGAATCAGAGGTAGAGACTG+AGG | + | chr1.3:78469133-78469152 | MS.gene037410:CDS | 45.0% | |
| TGTCAGCCCAAAAGCTACAA+TGG | - | chr1.3:78469833-78469852 | None:intergenic | 45.0% | |
| TTTGGGCTGACAATCAAGAC+TGG | + | chr1.3:78469841-78469860 | MS.gene037410:intron | 45.0% | |
| ! | AGAGACTGAGGTTGATTCCA+AGG | + | chr1.3:78469145-78469164 | MS.gene037410:CDS | 45.0% |
| ! | CATGCCACTCAAATTTCTGG+TGG | - | chr1.3:78469333-78469352 | None:intergenic | 45.0% |
| ! | CCTCTCACCATTGTAGCTTT+TGG | + | chr1.3:78469823-78469842 | MS.gene037410:intron | 45.0% |
| ! | TCAAGAATCTGGAGCTGAAC+CGG | - | chr1.3:78468945-78468964 | None:intergenic | 45.0% |
| ! | TCTTTAGGAAGTAGTCCTGC+TGG | - | chr1.3:78468143-78468162 | None:intergenic | 45.0% |
| !! | GAGTCATCGTGATTTTGAGG+AGG | - | chr1.3:78467873-78467892 | None:intergenic | 45.0% |
| !!! | CCTGCCTTTTTTTTTGTGGG+GGG | - | chr1.3:78468737-78468756 | None:intergenic | 45.0% |
| !! | CAAAATAATATAAAAATTAA+AGG | - | chr1.3:78467529-78467548 | None:intergenic | 5.0% |
| !!! | ACTTTTTAAAAAAAAAAAAT+TGG | - | chr1.3:78468542-78468561 | None:intergenic | 5.0% |
| !!! | CTTTTTAAAAAAAAAAAATT+GGG | - | chr1.3:78468541-78468560 | None:intergenic | 5.0% |
| !!! | TTTTTAAAAAAAAAAAATTG+GGG | - | chr1.3:78468540-78468559 | None:intergenic | 5.0% |
| ACTTGAGGTTCCTCAAGGGA+CGG | + | chr1.3:78468455-78468474 | MS.gene037410:intron | 50.0% | |
| CCCCCCACAAAAAAAAAGGC+AGG | + | chr1.3:78468734-78468753 | MS.gene037410:intron | 50.0% | |
| CTTTCATCAGGGGTTAGGCT+GGG | + | chr1.3:78468849-78468868 | MS.gene037410:intron | 50.0% | |
| GATCTTATACCGCCATCCGA+TGG | - | chr1.3:78469311-78469330 | None:intergenic | 50.0% | |
| GATTTCAACTCCGTCCCTTG+AGG | - | chr1.3:78468468-78468487 | None:intergenic | 50.0% | |
| GCAGAGGACTACAATTTGGC+AGG | + | chr1.3:78469955-78469974 | MS.gene037410:CDS | 50.0% | |
| TTTCATCAGGGGTTAGGCTG+GGG | + | chr1.3:78468850-78468869 | MS.gene037410:intron | 50.0% | |
| ! | TGCGACTCATTGATGACAGC+TGG | + | chr1.3:78468882-78468901 | MS.gene037410:CDS | 50.0% |
| ACCGCCATCCGATGGAAACA+CGG | - | chr1.3:78469303-78469322 | None:intergenic | 55.0% | |
| CCAGCCTAACCCCTGATGAA+AGG | - | chr1.3:78468851-78468870 | None:intergenic | 55.0% | |
| CCTTTCATCAGGGGTTAGGC+TGG | + | chr1.3:78468848-78468867 | MS.gene037410:intron | 55.0% | |
| GCTACTGAACTCAGCCAGCA+TGG | + | chr1.3:78469020-78469039 | MS.gene037410:CDS | 55.0% | |
| TCCGTGTTTCCATCGGATGG+CGG | + | chr1.3:78469299-78469318 | MS.gene037410:CDS | 55.0% | |
| TGTAGGAGTCCACCTCTGTC+TGG | - | chr1.3:78468922-78468941 | None:intergenic | 55.0% | |
| ! | ACAGAGGTGGACTCCTACAC+CGG | + | chr1.3:78468923-78468942 | MS.gene037410:CDS | 55.0% |
| ! | ATCTGGAGCTGAACCGGTGT+AGG | - | chr1.3:78468939-78468958 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 78467296 | 78469981 | 78467296 | ID=MS.gene037410 |
| chr1.3 | mRNA | 78467296 | 78469981 | 78467296 | ID=MS.gene037410.t1;Parent=MS.gene037410 |
| chr1.3 | exon | 78467296 | 78467479 | 78467296 | ID=MS.gene037410.t1.exon1;Parent=MS.gene037410.t1 |
| chr1.3 | CDS | 78467296 | 78467479 | 78467296 | ID=cds.MS.gene037410.t1;Parent=MS.gene037410.t1 |
| chr1.3 | exon | 78468859 | 78469383 | 78468859 | ID=MS.gene037410.t1.exon2;Parent=MS.gene037410.t1 |
| chr1.3 | CDS | 78468859 | 78469383 | 78468859 | ID=cds.MS.gene037410.t1;Parent=MS.gene037410.t1 |
| chr1.3 | exon | 78469896 | 78469981 | 78469896 | ID=MS.gene037410.t1.exon3;Parent=MS.gene037410.t1 |
| chr1.3 | CDS | 78469896 | 78469981 | 78469896 | ID=cds.MS.gene037410.t1;Parent=MS.gene037410.t1 |
| Gene Sequence |
| Protein sequence |
