AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037441

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037441.t1 MTR_6g051425 30.566 265 167 6 54 305 31 291 1.47e-34 135
MS.gene037441.t1 MTR_0856s0010 50.413 121 59 1 46 165 40 160 1.59e-30 118
MS.gene037441.t1 MTR_4g035820 31.950 241 143 10 55 280 90 324 1.08e-21 100
MS.gene037441.t1 MTR_1g070355 29.204 226 145 7 55 270 89 309 3.95e-20 95.5
MS.gene037441.t1 MTR_7g446060 51.220 82 40 0 122 203 7 88 6.18e-20 87.0
MS.gene037441.t1 MTR_0558s0020 25.490 255 166 5 46 276 42 296 8.83e-20 91.3
MS.gene037441.t1 MTR_8g446020 27.933 179 126 2 101 276 78 256 3.97e-17 82.4
MS.gene037441.t1 MTR_7g446480 31.977 172 116 1 114 284 143 314 4.96e-17 83.2
MS.gene037441.t1 MTR_6g022070 28.966 145 99 1 330 474 1 141 5.39e-17 83.6
MS.gene037441.t1 MTR_1g008290 32.331 133 88 1 100 232 14 144 1.01e-16 78.2
MS.gene037441.t1 MTR_3g450850 25.965 285 188 8 2 264 3 286 1.15e-16 82.8
MS.gene037441.t1 MTR_7g446510 32.530 166 111 1 120 284 164 329 1.97e-16 81.6
MS.gene037441.t1 MTR_7g446520 24.691 243 170 2 37 278 85 315 1.32e-15 79.3
MS.gene037441.t1 MTR_7g115320 61.111 54 18 1 129 182 9 59 8.91e-15 70.9
MS.gene037441.t1 MTR_3g012160 41.975 81 46 1 185 265 14 93 1.34e-13 67.4
MS.gene037441.t1 MTR_5g076070 25.114 219 151 7 55 264 68 282 7.23e-13 70.5
MS.gene037441.t1 MTR_5g023310 28.205 156 45 2 171 326 16 104 1.39e-12 65.1
MS.gene037441.t1 MTR_6g090505 25.843 178 129 2 101 275 53 230 2.05e-12 70.1
MS.gene037441.t1 MTR_1g083640 23.451 226 149 5 46 247 57 282 3.22e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037441.t1 AT4G15090 31.850 719 449 13 55 763 66 753 2.39e-121 384
MS.gene037441.t1 AT4G15090 31.850 719 449 13 55 763 66 753 2.39e-121 384
MS.gene037441.t1 AT4G15090 31.850 719 449 13 55 763 66 753 2.39e-121 384
MS.gene037441.t1 AT4G15090 31.850 719 449 13 55 763 66 753 2.39e-121 384
MS.gene037441.t1 AT4G15090 31.850 719 449 13 55 763 66 753 2.39e-121 384
MS.gene037441.t1 AT4G38180 33.746 646 392 13 52 671 85 720 1.35e-115 368
MS.gene037441.t1 AT3G22170 29.688 768 460 15 16 762 55 763 1.55e-107 348
MS.gene037441.t1 AT3G22170 29.688 768 460 15 16 762 55 763 1.55e-107 348
MS.gene037441.t1 AT1G76320 32.082 586 374 9 45 625 2 568 1.40e-103 333
MS.gene037441.t1 AT1G76320 32.082 586 374 9 45 625 2 568 2.91e-103 334
MS.gene037441.t1 AT1G76320 32.082 586 374 9 45 625 2 568 4.14e-103 333
MS.gene037441.t1 AT1G76320 32.082 586 374 9 45 625 2 568 4.14e-103 333
MS.gene037441.t1 AT1G52520 32.504 563 359 11 45 599 90 639 2.46e-99 323
MS.gene037441.t1 AT3G06250 32.804 567 329 14 36 598 186 704 9.72e-90 299
MS.gene037441.t1 AT3G06250 32.804 567 329 14 36 598 186 704 9.72e-90 299
MS.gene037441.t1 AT3G06250 32.804 567 329 14 36 598 186 704 9.72e-90 299
MS.gene037441.t1 AT2G27110 31.240 605 363 14 45 637 54 617 1.44e-89 300
MS.gene037441.t1 AT2G27110 31.240 605 363 14 45 637 54 617 1.44e-89 300
MS.gene037441.t1 AT2G27110 34.728 478 289 9 164 637 14 472 2.04e-88 294
MS.gene037441.t1 AT1G80010 31.834 578 350 12 51 602 106 665 5.23e-86 288
MS.gene037441.t1 AT5G18960 31.240 605 360 16 17 614 190 745 1.70e-82 280
MS.gene037441.t1 AT5G18960 31.240 605 360 16 17 614 190 745 1.70e-82 280
MS.gene037441.t1 AT2G32250 34.312 443 270 6 216 650 135 564 7.11e-82 278
MS.gene037441.t1 AT2G32250 34.312 443 270 6 216 650 135 564 8.10e-82 277
MS.gene037441.t1 AT2G32250 34.312 443 270 6 216 650 176 605 9.20e-82 277
MS.gene037441.t1 AT2G32250 34.312 443 270 6 216 650 176 605 1.50e-81 278
MS.gene037441.t1 AT2G32250 34.312 443 270 6 216 650 176 605 1.50e-81 278
MS.gene037441.t1 AT2G32250 34.312 443 270 6 216 650 176 605 1.83e-81 277
MS.gene037441.t1 AT2G32250 34.312 443 270 6 216 650 176 605 1.83e-81 277
MS.gene037441.t1 AT2G32250 34.312 443 270 6 216 650 176 605 1.83e-81 277
MS.gene037441.t1 AT4G19990 30.303 594 344 12 55 624 36 583 6.62e-78 266
MS.gene037441.t1 AT4G19990 30.303 594 344 12 55 624 36 583 6.62e-78 266
MS.gene037441.t1 AT4G19990 30.303 594 344 12 55 624 36 583 8.54e-78 266
MS.gene037441.t1 AT4G19990 30.303 594 344 12 55 624 50 597 1.37e-77 266
MS.gene037441.t1 AT4G19990 30.303 594 344 12 55 624 36 583 1.72e-77 266
MS.gene037441.t1 AT4G19990 30.303 594 344 12 55 624 36 583 1.72e-77 266
MS.gene037441.t1 AT4G38170 33.763 388 246 4 213 598 21 399 8.13e-76 256
MS.gene037441.t1 AT4G19990 30.983 539 318 10 96 624 32 526 3.74e-75 258
MS.gene037441.t1 AT1G10240 27.176 563 367 15 55 595 63 604 1.59e-61 220
MS.gene037441.t1 AT1G10240 27.176 563 367 15 55 595 63 604 1.59e-61 220
MS.gene037441.t1 AT5G28530 27.645 586 360 13 46 595 61 618 1.36e-58 212
MS.gene037441.t1 AT5G28530 27.133 586 359 12 46 595 61 614 9.74e-58 209
MS.gene037441.t1 AT5G28530 27.133 586 359 12 46 595 61 614 9.74e-58 209
MS.gene037441.t1 AT5G28530 26.524 328 203 7 282 595 252 555 3.11e-27 118
MS.gene037441.t1 AT5G28530 25.610 328 202 6 282 595 252 551 1.73e-26 115

Find 154 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGTGTTGACGTTTCGGATTC+CGG 0.204382 4.1:-80842756 MS.gene037441:CDS
TCTTTCCCGCTCTTCGAAAA+TGG 0.249066 4.1:+80841594 None:intergenic
GATTGCAAACCCTTGTTTCA+TGG 0.302647 4.1:+80842629 None:intergenic
AAGACCGCAACCTAGTAAAA+TGG 0.321194 4.1:+80841948 None:intergenic
GTGTTGACGTTTCGGATTCC+GGG 0.344560 4.1:-80842755 MS.gene037441:CDS
GGCTATGCAGAATGCAATTC+AGG 0.347065 4.1:-80841824 MS.gene037441:CDS
TTGCTTTAAAGAAGGGTCTA+TGG 0.361166 4.1:-80842458 MS.gene037441:CDS
ATGCCATTTGCCCCGTTTGT+TGG 0.369173 4.1:-80841991 MS.gene037441:CDS
ACTAAATCACGGTTGTTTGC+TGG 0.375082 4.1:-80842390 MS.gene037441:CDS
AGTATTGTGTTGATTTCAAC+GGG 0.389824 4.1:-80841180 MS.gene037441:CDS
CACCACCTATGCCTAGTATT+AGG 0.393202 4.1:+80841793 None:intergenic
GTACACCCATGACAAGTATA+TGG 0.398379 4.1:-80841326 MS.gene037441:CDS
GGATTAAGAATTGGTTGATC+AGG 0.405554 4.1:+80840758 None:intergenic
CTAGGCATAGGTGGTGTCTA+TGG 0.405638 4.1:-80841786 MS.gene037441:CDS
CCACACATTGAAAGATTTGA+AGG 0.409966 4.1:-80840965 MS.gene037441:CDS
ACTTCGACAACCGAAACAAT+TGG 0.413255 4.1:+80840638 None:intergenic
AAAGGATGATCGATCAATAT+AGG 0.415391 4.1:+80842816 None:intergenic
ACATTACTTCCTATGTCTGA+TGG 0.423977 4.1:-80840506 MS.gene037441:CDS
CCTCTGTGTTGTTGACATTC+CGG 0.424793 4.1:+80841537 None:intergenic
TGTGGCTCGTGTTGACGTTT+CGG 0.430935 4.1:-80842763 MS.gene037441:CDS
GATGATTGACACCAACAAAC+GGG 0.432575 4.1:+80841980 None:intergenic
TTGGTGGTATGTTTGATTCA+TGG 0.433399 4.1:+80842532 None:intergenic
ACACCAACAAACGGGGCAAA+TGG 0.438957 4.1:+80841988 None:intergenic
GCAAACAACCGTGATTTAGT+TGG 0.439208 4.1:+80842393 None:intergenic
ATGGTTTGGGTGAAAATGAT+TGG 0.445440 4.1:-80841624 MS.gene037441:CDS
CCATCAGCTAGCTCTCCGTC+AGG 0.447783 4.1:+80842786 None:intergenic
CATTACTTCCTATGTCTGAT+GGG 0.447968 4.1:-80840505 MS.gene037441:CDS
TGATGATTGACACCAACAAA+CGG 0.449717 4.1:+80841979 None:intergenic
ACACAATACTTAGTTTCGTT+CGG 0.457073 4.1:+80841193 None:intergenic
GGCTAAGGTGTATGTCTTCG+AGG 0.457503 4.1:-80841879 MS.gene037441:CDS
TATCCTACTTTGCTAGAATG+AGG 0.459924 4.1:-80842167 MS.gene037441:CDS
AAAACTAGAAACTCTAAGAA+AGG 0.460138 4.1:-80842606 MS.gene037441:CDS
AAACTAGAAACTCTAAGAAA+GGG 0.460938 4.1:-80842605 MS.gene037441:CDS
ACTCCAAGACAAGGCTGAAA+AGG 0.462412 4.1:-80841431 MS.gene037441:CDS
CAAATGGTCTACCAAGAAGT+TGG 0.463702 4.1:-80840861 MS.gene037441:CDS
AGGTTGTGTTTCCTAATACT+AGG 0.465284 4.1:-80841804 MS.gene037441:CDS
GCAAAAGAAAGACACCTTCT+CGG 0.472868 4.1:-80842216 MS.gene037441:CDS
GATAACGGTTGCTTTAAAGA+AGG 0.473052 4.1:-80842466 MS.gene037441:CDS
AACATCACCAAAGTATTCAT+AGG 0.473828 4.1:+80842053 None:intergenic
TTTGTTGGTGTCAATCATCA+TGG 0.475674 4.1:-80841976 MS.gene037441:CDS
GCCACATTGTGGTGTGGGAG+GGG 0.479684 4.1:-80840822 MS.gene037441:CDS
GAGCAATCAAGTTTCTTCGT+TGG 0.480101 4.1:+80842495 None:intergenic
CACTTATGCTCGATGGCTGA+TGG 0.482201 4.1:-80842843 None:intergenic
TCGGGAAGGAAGGAGATGGC+AGG 0.482875 4.1:-80842197 MS.gene037441:CDS
ATTTGTTGTTTCAAAGGTCC+CGG 0.485747 4.1:+80842737 None:intergenic
CCTTCAAATCTTTCAATGTG+TGG 0.491616 4.1:+80840965 None:intergenic
GACAGCATTTGTTGTTTCAA+AGG 0.491833 4.1:+80842731 None:intergenic
CTTGTTTCATGGCATATTCA+CGG 0.492232 4.1:+80842640 None:intergenic
AAAACCACTAGTTGACTGTT+GGG 0.492621 4.1:+80840445 None:intergenic
TCCGTTAAAAGTACCACGTA+AGG 0.492742 4.1:-80840738 MS.gene037441:CDS
GACAATACTCTCCTCTAAAA+CGG 0.498094 4.1:+80841225 None:intergenic
CGTGAATATGCCATGAAACA+AGG 0.498225 4.1:-80842639 MS.gene037441:CDS
TGTATGAAGAAATGATCAAA+TGG 0.501577 4.1:-80840877 MS.gene037441:CDS
AAATGGTCTACCAAGAAGTT+GGG 0.502052 4.1:-80840860 MS.gene037441:CDS
TTTCGAAGAGCGGGAAAGAT+GGG 0.502201 4.1:-80841590 MS.gene037441:CDS
GTTGGATTCGTCTTCAAAGT+TGG 0.502236 4.1:+80842513 None:intergenic
ATACTTGTCATGGGTGTACT+CGG 0.502362 4.1:+80841330 None:intergenic
CATCTCCTTCCTTCCCGAGA+AGG 0.502837 4.1:+80842202 None:intergenic
TTACCTGGTTGTTCGAAACA+TGG 0.503284 4.1:-80841900 MS.gene037441:CDS
TGGTCATCTTAGAGTGAAAG+AGG 0.503540 4.1:-80841080 MS.gene037441:CDS
TATGTCTTCGAGGCCTCCAA+TGG 0.508338 4.1:-80841869 MS.gene037441:CDS
TCGGTTACAATTCCCATTGG+AGG 0.511504 4.1:+80841856 None:intergenic
TCTGATGGGTTTCAAGCGTC+CGG 0.512219 4.1:-80840491 MS.gene037441:CDS
TTACGAAAATCTAACATTTG+TGG 0.512305 4.1:-80842262 MS.gene037441:CDS
AAACGATCAGGCAGGTGTAC+GGG 0.512319 4.1:-80842325 MS.gene037441:CDS
CGTTCCATGGTATGTGATGC+CGG 0.512631 4.1:-80842288 MS.gene037441:CDS
GAGAGATGTCAGAAACTTTG+TGG 0.514693 4.1:-80842238 MS.gene037441:CDS
TCTGGGCTGATGCACGTAGT+AGG 0.516810 4.1:-80842080 MS.gene037441:CDS
CAAAAGAAAGACACCTTCTC+GGG 0.517286 4.1:-80842215 MS.gene037441:CDS
GTATCTCCATATACTTGTCA+TGG 0.517305 4.1:+80841320 None:intergenic
ATAACGGTTGCTTTAAAGAA+GGG 0.522275 4.1:-80842465 MS.gene037441:CDS
TTCCCTCATTCTAGCAAAGT+AGG 0.524536 4.1:+80842164 None:intergenic
GAACAAAAGTTTCCGTTCCA+TGG 0.529264 4.1:-80842301 MS.gene037441:CDS
GGATTCGTCTTCAAAGTTGG+TGG 0.530111 4.1:+80842516 None:intergenic
TAAACGATCAGGCAGGTGTA+CGG 0.533293 4.1:-80842326 MS.gene037441:CDS
AAGTATTGTGTTGATTTCAA+CGG 0.536214 4.1:-80841181 MS.gene037441:CDS
TAAAACCACTAGTTGACTGT+TGG 0.536849 4.1:+80840444 None:intergenic
ATTGTTGAATTTGACCCGCA+TGG 0.537156 4.1:+80841370 None:intergenic
ATCCTACTTTGCTAGAATGA+GGG 0.537508 4.1:-80842166 MS.gene037441:CDS
TGATCGGTTACAATTCCCAT+TGG 0.541217 4.1:+80841853 None:intergenic
CTGCATAGCCTTGCACTGAT+CGG 0.542185 4.1:+80841837 None:intergenic
CTATGAGATTGACATGGACG+AGG 0.547341 4.1:-80842124 MS.gene037441:CDS
TGTTTGTTGTTTGAGTTCAG+AGG 0.550114 4.1:-80841133 MS.gene037441:CDS
TGATTGCTCAGCTAAGATAA+CGG 0.550952 4.1:-80842481 MS.gene037441:CDS
GATAAATTCACGCCTACTAT+CGG 0.551302 4.1:-80842702 MS.gene037441:intron
TATCTCCATATACTTGTCAT+GGG 0.551454 4.1:+80841321 None:intergenic
ATTCTAACTTGTGCAAGAGA+AGG 0.552020 4.1:-80842558 MS.gene037441:CDS
AGGTCTGCCTATGAATACTT+TGG 0.552277 4.1:-80842060 MS.gene037441:CDS
AGACACCTTCTCGGGAAGGA+AGG 0.553011 4.1:-80842207 MS.gene037441:CDS
CAGCCACATTGTGGTGTGGG+AGG 0.557227 4.1:-80840824 MS.gene037441:CDS
TTACAGCCACATTGTGGTGT+GGG 0.557892 4.1:-80840827 MS.gene037441:CDS
TGTTTCGAACAACCAGGTAA+AGG 0.558836 4.1:+80841903 None:intergenic
AACTCTAAGAAAGGGGCCGA+TGG 0.560180 4.1:-80842597 MS.gene037441:CDS
AGCCACATTGTGGTGTGGGA+GGG 0.562336 4.1:-80840823 MS.gene037441:CDS
CTAAATTTATCTTGCCACGA+TGG 0.563368 4.1:-80841051 MS.gene037441:CDS
GAGATACAAGTAGAATTTCG+TGG 0.566723 4.1:-80841304 MS.gene037441:CDS
GAACAACCAGGTAAAGGACT+TGG 0.570795 4.1:+80841909 None:intergenic
ATGTCTTCGAGGCCTCCAAT+GGG 0.571048 4.1:-80841868 MS.gene037441:CDS
TGTTTCCTAATACTAGGCAT+AGG 0.571109 4.1:-80841798 MS.gene037441:CDS
TTGTTGGTGTCAATCATCAT+GGG 0.576932 4.1:-80841975 MS.gene037441:CDS
TCTCGAAGGTGTGACTACAT+TGG 0.577648 4.1:-80841266 MS.gene037441:CDS
CATCAGCTAGCTCTCCGTCA+GGG 0.579535 4.1:+80842787 None:intergenic
ATCAGCTAGCTCTCCGTCAG+GGG 0.582853 4.1:+80842788 None:intergenic
TCAGACATAGGAAGTAATGT+AGG 0.589454 4.1:+80840509 None:intergenic
TTGTGTGTATGATTCTCTGC+GGG 0.590009 4.1:-80841689 MS.gene037441:CDS
CATTTCTTCATACAAATCAG+AGG 0.596809 4.1:+80840886 None:intergenic
GCTTGAAACCCATCAGACAT+AGG 0.602294 4.1:+80840497 None:intergenic
GTGAATATGCCATGAAACAA+GGG 0.602322 4.1:-80842638 MS.gene037441:CDS
AAGATACCAAGTCCTTTACC+TGG 0.605756 4.1:-80841915 MS.gene037441:CDS
GAAGTAGTTAAGCGTATCAC+CGG 0.605920 4.1:+80840472 None:intergenic
CGACAACGCACTCCAAGACA+AGG 0.606607 4.1:-80841440 MS.gene037441:CDS
AGATACAAGTAGAATTTCGT+GGG 0.607840 4.1:-80841303 MS.gene037441:CDS
AGAAAGACACCTTCTCGGGA+AGG 0.609091 4.1:-80842211 MS.gene037441:CDS
GACAACCGACGATTAGTTCG+AGG 0.611005 4.1:+80840710 None:intergenic
TGCATCAATGAGCAAAGATG+TGG 0.611914 4.1:-80840411 MS.gene037441:CDS
ACCACCGGCATCACATACCA+TGG 0.613048 4.1:+80842284 None:intergenic
AAATGCAACTGTTATCTCGA+AGG 0.615193 4.1:-80841280 MS.gene037441:CDS
TTCCTAATACTAGGCATAGG+TGG 0.615209 4.1:-80841795 MS.gene037441:CDS
CAAGCACAATCATTCCATGC+GGG 0.616971 4.1:-80841384 MS.gene037441:CDS
GGTTGTTCGAAACATGGCTA+AGG 0.617470 4.1:-80841894 MS.gene037441:CDS
CGTGGCAAGATAAATTTAGA+CGG 0.619992 4.1:+80841055 None:intergenic
AATTGTAACCGATCAGTGCA+AGG 0.620761 4.1:-80841845 MS.gene037441:CDS
CGGGAAGGAAGGAGATGGCA+GGG 0.622349 4.1:-80842196 MS.gene037441:CDS
TCATCCCAACAGTCAACTAG+TGG 0.623204 4.1:-80840449 MS.gene037441:CDS
CCGTTAAAAGTACCACGTAA+GGG 0.624486 4.1:-80840737 MS.gene037441:CDS
CGGCATCACATACCATGGAA+CGG 0.625469 4.1:+80842289 None:intergenic
TAGCCATGTTTCGAACAACC+AGG 0.627145 4.1:+80841897 None:intergenic
GTTCGAGGACGTCCCTTACG+TGG 0.628497 4.1:+80840725 None:intergenic
CTTCTCGGGAAGGAAGGAGA+TGG 0.631777 4.1:-80842201 MS.gene037441:CDS
TTTACAGCCACATTGTGGTG+TGG 0.632168 4.1:-80840828 MS.gene037441:CDS
AACTAGAAACTCTAAGAAAG+GGG 0.633083 4.1:-80842604 MS.gene037441:CDS
ATGAGTTTACAGCCACATTG+TGG 0.634509 4.1:-80840833 MS.gene037441:CDS
AAAGGATACGCACAATACAA+AGG 0.637659 4.1:-80841733 MS.gene037441:CDS
CAAGGCTGAAAAGGAATACG+AGG 0.638254 4.1:-80841422 MS.gene037441:CDS
GGATGATCGATCAATATAGG+AGG 0.639611 4.1:+80842819 None:intergenic
TACAAATCAGAGGTTTGACT+AGG 0.642589 4.1:+80840896 None:intergenic
AGATAAGTCCAACTAAATCA+CGG 0.645312 4.1:-80842401 MS.gene037441:CDS
CCTGACGGAGAGCTAGCTGA+TGG 0.649164 4.1:-80842786 MS.gene037441:CDS
CGGAGAGCTAGCTGATGGTG+TGG 0.651191 4.1:-80842781 MS.gene037441:CDS
TCAGCTAGCTCTCCGTCAGG+GGG 0.662037 4.1:+80842789 None:intergenic
TTATGAAATTGCAGAATGTG+CGG 0.662542 4.1:-80840927 MS.gene037441:CDS
ATGATTGACACCAACAAACG+GGG 0.665562 4.1:+80841981 None:intergenic
TTAGAGGAGAGTATTGTCTG+TGG 0.669312 4.1:-80841220 MS.gene037441:CDS
GGATCATAGCTTAAACACGA+TGG 0.674970 4.1:-80840801 MS.gene037441:CDS
GACGTCCTCGAACTAATCGT+CGG 0.680634 4.1:-80840715 MS.gene037441:CDS
TCATAGCTTAAACACGATGG+AGG 0.690849 4.1:-80840798 MS.gene037441:CDS
ATACTTGTTTGTCAAGTACG+TGG 0.696002 4.1:+80842017 None:intergenic
TCAAGCACAATCATTCCATG+CGG 0.697666 4.1:-80841385 MS.gene037441:CDS
TCCCCTCCCACACCACAATG+TGG 0.710147 4.1:+80840821 None:intergenic
ATTGTGTGTATGATTCTCTG+CGG 0.733784 4.1:-80841690 MS.gene037441:CDS
TCCATGGTATGTGATGCCGG+TGG 0.764195 4.1:-80842285 MS.gene037441:CDS
CCGGAATGTCAACAACACAG+AGG 0.797075 4.1:-80841537 MS.gene037441:CDS
AGATTGATATGCATGCACAG+CGG 0.798983 4.1:-80842359 MS.gene037441:CDS
GTATTGTGTTGATTTCAACG+GGG 0.841514 4.1:-80841179 MS.gene037441:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAAAAAATGATTTCT+GGG - chr4.1:80841665-80841684 MS.gene037441:CDS 10.0%
!!! AAATCATTTTTTAAATAACA+TGG + chr4.1:80841663-80841682 None:intergenic 10.0%
!! AATGTAATCACAATAATAAT+AGG + chr4.1:80842626-80842645 None:intergenic 15.0%
!! GTTATTTAAAAAATGATTTC+TGG - chr4.1:80841664-80841683 MS.gene037441:CDS 15.0%
!! AAGAAAAAAACCAATTGTTT+CGG - chr4.1:80842577-80842596 MS.gene037441:CDS 20.0%
!! ACAACATTCATTGAAAAATA+TGG - chr4.1:80841582-80841601 MS.gene037441:CDS 20.0%
!! ATTCATTGAAAAATATGGTT+TGG - chr4.1:80841587-80841606 MS.gene037441:CDS 20.0%
!! TTCATTGAAAAATATGGTTT+GGG - chr4.1:80841588-80841607 MS.gene037441:CDS 20.0%
! AAAATTGCCGAAAAATTGAA+AGG - chr4.1:80841474-80841493 MS.gene037441:CDS 25.0%
! TGTATGAAGAAATGATCAAA+TGG - chr4.1:80842348-80842367 MS.gene037441:CDS 25.0%
! TTACGAAAATCTAACATTTG+TGG - chr4.1:80840963-80840982 MS.gene037441:CDS 25.0%
!! AAAACTAGAAACTCTAAGAA+AGG - chr4.1:80840619-80840638 MS.gene037441:intron 25.0%
!! AAACTAGAAACTCTAAGAAA+GGG - chr4.1:80840620-80840639 MS.gene037441:intron 25.0%
!! TATCGGTATGTCTTTTTAAT+CGG - chr4.1:80840540-80840559 MS.gene037441:intron 25.0%
!!! AAGTATTGTGTTGATTTCAA+CGG - chr4.1:80842044-80842063 MS.gene037441:CDS 25.0%
!!! ACTTTTAACGGATTAAGAAT+TGG + chr4.1:80842479-80842498 None:intergenic 25.0%
!!! GAAATATTTTAACATGCCAT+CGG + chr4.1:80840647-80840666 None:intergenic 25.0%
!!! TTTTTTCACAATCTTTTCAG+TGG + chr4.1:80842543-80842562 None:intergenic 25.0%
AAAGGATGATCGATCAATAT+AGG + chr4.1:80840412-80840431 None:intergenic 30.0%
AAGATGACCAAGTACAAAAA+AGG + chr4.1:80842135-80842154 None:intergenic 30.0%
ACACAATACTTAGTTTCGTT+CGG + chr4.1:80842035-80842054 None:intergenic 30.0%
AGATAAGTCCAACTAAATCA+CGG - chr4.1:80840824-80840843 MS.gene037441:CDS 30.0%
AGATACAAGTAGAATTTCGT+GGG - chr4.1:80841922-80841941 MS.gene037441:CDS 30.0%
CATTTCTTCATACAAATCAG+AGG + chr4.1:80842342-80842361 None:intergenic 30.0%
TAAAAAGACATACCGATAGT+AGG + chr4.1:80840538-80840557 None:intergenic 30.0%
TATCTCCATATACTTGTCAT+GGG + chr4.1:80841907-80841926 None:intergenic 30.0%
TTATGAAATTGCAGAATGTG+CGG - chr4.1:80842298-80842317 MS.gene037441:CDS 30.0%
! AACATCACCAAAGTATTCAT+AGG + chr4.1:80841175-80841194 None:intergenic 30.0%
! AACTAGAAACTCTAAGAAAG+GGG - chr4.1:80840621-80840640 MS.gene037441:intron 30.0%
! CTTTTTCTATGAGATTGACA+TGG - chr4.1:80841095-80841114 MS.gene037441:CDS 30.0%
! TCATGTGCAGAATATTTTCT+GGG - chr4.1:80841128-80841147 MS.gene037441:CDS 30.0%
! TGCGTATCCTTTCAATTTTT+CGG + chr4.1:80841484-80841503 None:intergenic 30.0%
! TTAAAAAATGATTTCTGGGC+CGG - chr4.1:80841669-80841688 MS.gene037441:CDS 30.0%
! TTCATGTGCAGAATATTTTC+TGG - chr4.1:80841127-80841146 MS.gene037441:CDS 30.0%
!! AGTATTGTGTTGATTTCAAC+GGG - chr4.1:80842045-80842064 MS.gene037441:CDS 30.0%
!! ATAACGGTTGCTTTAAAGAA+GGG - chr4.1:80840760-80840779 MS.gene037441:CDS 30.0%
!! GACAATTTTGATAAACGATC+AGG - chr4.1:80840888-80840907 MS.gene037441:CDS 30.0%
!!! AATGTGTGGTTGTAGTTTTT+TGG + chr4.1:80842249-80842268 None:intergenic 30.0%
!!! AGTATGAATGCTTTTTTCGA+TGG - chr4.1:80841717-80841736 MS.gene037441:CDS 30.0%
AAAACCACTAGTTGACTGTT+GGG + chr4.1:80842783-80842802 None:intergenic 35.0%
AAAGGATACGCACAATACAA+AGG - chr4.1:80841492-80841511 MS.gene037441:CDS 35.0%
AAATGCAACTGTTATCTCGA+AGG - chr4.1:80841945-80841964 MS.gene037441:CDS 35.0%
AAATGGTCTACCAAGAAGTT+GGG - chr4.1:80842365-80842384 MS.gene037441:CDS 35.0%
ACATTACTTCCTATGTCTGA+TGG - chr4.1:80842719-80842738 MS.gene037441:CDS 35.0%
AGGTTGTGTTTCCTAATACT+AGG - chr4.1:80841421-80841440 MS.gene037441:CDS 35.0%
ATACTTGTTTGTCAAGTACG+TGG + chr4.1:80841211-80841230 None:intergenic 35.0%
ATCCTACTTTGCTAGAATGA+GGG - chr4.1:80841059-80841078 MS.gene037441:CDS 35.0%
ATTGTGTGTATGATTCTCTG+CGG - chr4.1:80841535-80841554 MS.gene037441:CDS 35.0%
CATTACTTCCTATGTCTGAT+GGG - chr4.1:80842720-80842739 MS.gene037441:CDS 35.0%
CCACACATTGAAAGATTTGA+AGG - chr4.1:80842260-80842279 MS.gene037441:CDS 35.0%
CCTTCAAATCTTTCAATGTG+TGG + chr4.1:80842263-80842282 None:intergenic 35.0%
CGTGGCAAGATAAATTTAGA+CGG + chr4.1:80842173-80842192 None:intergenic 35.0%
CTAAATTTATCTTGCCACGA+TGG - chr4.1:80842174-80842193 MS.gene037441:CDS 35.0%
CTTGTTTCATGGCATATTCA+CGG + chr4.1:80840588-80840607 None:intergenic 35.0%
GAGATACAAGTAGAATTTCG+TGG - chr4.1:80841921-80841940 MS.gene037441:CDS 35.0%
GATAAATTCACGCCTACTAT+CGG - chr4.1:80840523-80840542 MS.gene037441:intron 35.0%
GGATTAAGAATTGGTTGATC+AGG + chr4.1:80842470-80842489 None:intergenic 35.0%
GTATCTCCATATACTTGTCA+TGG + chr4.1:80841908-80841927 None:intergenic 35.0%
GTGAATATGCCATGAAACAA+GGG - chr4.1:80840587-80840606 MS.gene037441:intron 35.0%
TAAAACCACTAGTTGACTGT+TGG + chr4.1:80842784-80842803 None:intergenic 35.0%
TACAAATCAGAGGTTTGACT+AGG + chr4.1:80842332-80842351 None:intergenic 35.0%
TATCCTACTTTGCTAGAATG+AGG - chr4.1:80841058-80841077 MS.gene037441:CDS 35.0%
TCAGACATAGGAAGTAATGT+AGG + chr4.1:80842719-80842738 None:intergenic 35.0%
TGATGATTGACACCAACAAA+CGG + chr4.1:80841249-80841268 None:intergenic 35.0%
TGATTGCTCAGCTAAGATAA+CGG - chr4.1:80840744-80840763 MS.gene037441:CDS 35.0%
TGTTTCCTAATACTAGGCAT+AGG - chr4.1:80841427-80841446 MS.gene037441:CDS 35.0%
! ATCTACATACACCGTTTTAG+AGG - chr4.1:80841989-80842008 MS.gene037441:CDS 35.0%
! ATGGTTTGGGTGAAAATGAT+TGG - chr4.1:80841601-80841620 MS.gene037441:CDS 35.0%
! ATTCTAACTTGTGCAAGAGA+AGG - chr4.1:80840667-80840686 MS.gene037441:CDS 35.0%
! CAATCCATTTTACTAGGTTG+CGG - chr4.1:80841273-80841292 MS.gene037441:CDS 35.0%
! GACAATACTCTCCTCTAAAA+CGG + chr4.1:80842003-80842022 None:intergenic 35.0%
! TGAATACCATTTTCGAAGAG+CGG - chr4.1:80841625-80841644 MS.gene037441:CDS 35.0%
! TGTTAGATTTTCGTAACCAC+CGG + chr4.1:80840959-80840978 None:intergenic 35.0%
! TTCACATTTTTACTCCATCG+TGG + chr4.1:80842191-80842210 None:intergenic 35.0%
! TTGGTGGTATGTTTGATTCA+TGG + chr4.1:80840696-80840715 None:intergenic 35.0%
! TTTCACAATCTTTTCAGTGG+TGG + chr4.1:80842540-80842559 None:intergenic 35.0%
!! ATTTGTTGTTTCAAAGGTCC+CGG + chr4.1:80840491-80840510 None:intergenic 35.0%
!! ATTTTGATAAACGATCAGGC+AGG - chr4.1:80840892-80840911 MS.gene037441:CDS 35.0%
!! GACAGCATTTGTTGTTTCAA+AGG + chr4.1:80840497-80840516 None:intergenic 35.0%
!! GATAACGGTTGCTTTAAAGA+AGG - chr4.1:80840759-80840778 MS.gene037441:CDS 35.0%
!! GTATTGTGTTGATTTCAACG+GGG - chr4.1:80842046-80842065 MS.gene037441:CDS 35.0%
!! TGTTTGTTGTTTGAGTTCAG+AGG - chr4.1:80842092-80842111 MS.gene037441:CDS 35.0%
!! TTGCTTTAAAGAAGGGTCTA+TGG - chr4.1:80840767-80840786 MS.gene037441:CDS 35.0%
!! TTGTTGGTGTCAATCATCAT+GGG - chr4.1:80841250-80841269 MS.gene037441:CDS 35.0%
!! TTTGTTGGTGTCAATCATCA+TGG - chr4.1:80841249-80841268 MS.gene037441:CDS 35.0%
!!! AGACATGCCTTTTTTGTACT+TGG - chr4.1:80842125-80842144 MS.gene037441:CDS 35.0%
!!! GGGTTGATGATTTTGTTGTT+GGG - chr4.1:80841556-80841575 MS.gene037441:CDS 35.0%
!!! TTGATGATTTTGTTGTTGGG+TGG - chr4.1:80841559-80841578 MS.gene037441:CDS 35.0%
AAGACCGCAACCTAGTAAAA+TGG + chr4.1:80841280-80841299 None:intergenic 40.0%
AAGATACCAAGTCCTTTACC+TGG - chr4.1:80841310-80841329 MS.gene037441:CDS 40.0%
AATTGTAACCGATCAGTGCA+AGG - chr4.1:80841380-80841399 MS.gene037441:CDS 40.0%
ACTAAATCACGGTTGTTTGC+TGG - chr4.1:80840835-80840854 MS.gene037441:CDS 40.0%
ACTTCGACAACCGAAACAAT+TGG + chr4.1:80842590-80842609 None:intergenic 40.0%
AGATTGATATGCATGCACAG+CGG - chr4.1:80840866-80840885 MS.gene037441:CDS 40.0%
AGGTCTGCCTATGAATACTT+TGG - chr4.1:80841165-80841184 MS.gene037441:CDS 40.0%
ATACTTGTCATGGGTGTACT+CGG + chr4.1:80841898-80841917 None:intergenic 40.0%
ATGAGTTTACAGCCACATTG+TGG - chr4.1:80842392-80842411 MS.gene037441:CDS 40.0%
ATGATTGACACCAACAAACG+GGG + chr4.1:80841247-80841266 None:intergenic 40.0%
ATTGTTGAATTTGACCCGCA+TGG + chr4.1:80841858-80841877 None:intergenic 40.0%
CAAAAGAAAGACACCTTCTC+GGG - chr4.1:80841010-80841029 MS.gene037441:CDS 40.0%
CAAATGGTCTACCAAGAAGT+TGG - chr4.1:80842364-80842383 MS.gene037441:CDS 40.0%
CGTGAATATGCCATGAAACA+AGG - chr4.1:80840586-80840605 MS.gene037441:intron 40.0%
GAACAAAAGTTTCCGTTCCA+TGG - chr4.1:80840924-80840943 MS.gene037441:CDS 40.0%
GAAGTAGTTAAGCGTATCAC+CGG + chr4.1:80842756-80842775 None:intergenic 40.0%
GAGAGATGTCAGAAACTTTG+TGG - chr4.1:80840987-80841006 MS.gene037441:CDS 40.0%
GAGCAATCAAGTTTCTTCGT+TGG + chr4.1:80840733-80840752 None:intergenic 40.0%
GATGATTGACACCAACAAAC+GGG + chr4.1:80841248-80841267 None:intergenic 40.0%
GCAAAAGAAAGACACCTTCT+CGG - chr4.1:80841009-80841028 MS.gene037441:CDS 40.0%
GCAAACAACCGTGATTTAGT+TGG + chr4.1:80840835-80840854 None:intergenic 40.0%
GGATCATAGCTTAAACACGA+TGG - chr4.1:80842424-80842443 MS.gene037441:CDS 40.0%
GGATGATCGATCAATATAGG+AGG + chr4.1:80840409-80840428 None:intergenic 40.0%
GTACACCCATGACAAGTATA+TGG - chr4.1:80841899-80841918 MS.gene037441:CDS 40.0%
GTTGGATTCGTCTTCAAAGT+TGG + chr4.1:80840715-80840734 None:intergenic 40.0%
TCAAGCACAATCATTCCATG+CGG - chr4.1:80841840-80841859 MS.gene037441:CDS 40.0%
TCATAGCTTAAACACGATGG+AGG - chr4.1:80842427-80842446 MS.gene037441:CDS 40.0%
TGATCGGTTACAATTCCCAT+TGG + chr4.1:80841375-80841394 None:intergenic 40.0%
TGCATCAATGAGCAAAGATG+TGG - chr4.1:80842814-80842833 MS.gene037441:CDS 40.0%
TGGTCATCTTAGAGTGAAAG+AGG - chr4.1:80842145-80842164 MS.gene037441:CDS 40.0%
TGTTTCGAACAACCAGGTAA+AGG + chr4.1:80841325-80841344 None:intergenic 40.0%
TTACCTGGTTGTTCGAAACA+TGG - chr4.1:80841325-80841344 MS.gene037441:CDS 40.0%
TTCCCTCATTCTAGCAAAGT+AGG + chr4.1:80841064-80841083 None:intergenic 40.0%
TTCCTAATACTAGGCATAGG+TGG - chr4.1:80841430-80841449 MS.gene037441:CDS 40.0%
TTGTGTGTATGATTCTCTGC+GGG - chr4.1:80841536-80841555 MS.gene037441:CDS 40.0%
TTTCGGTTGTCGAAGTAAGT+TGG - chr4.1:80842594-80842613 MS.gene037441:CDS 40.0%
! ACTCATTTTGCCCAACTTCT+TGG + chr4.1:80842378-80842397 None:intergenic 40.0%
! AGGAATACGAGGCAGATTTT+CGG - chr4.1:80841814-80841833 MS.gene037441:CDS 40.0%
! CATGGGCAATCCATTTTACT+AGG - chr4.1:80841267-80841286 MS.gene037441:CDS 40.0%
! CCCTTACGTGGTACTTTTAA+CGG + chr4.1:80842491-80842510 None:intergenic 40.0%
! GAATACCATTTTCGAAGAGC+GGG - chr4.1:80841626-80841645 MS.gene037441:CDS 40.0%
! GATTGCAAACCCTTGTTTCA+TGG + chr4.1:80840599-80840618 None:intergenic 40.0%
!! ATTCCTTTTCAGCCTTGTCT+TGG + chr4.1:80841800-80841819 None:intergenic 40.0%
!! CCGTTAAAAGTACCACGTAA+GGG - chr4.1:80842488-80842507 MS.gene037441:CDS 40.0%
!! TCCGTTAAAAGTACCACGTA+AGG - chr4.1:80842487-80842506 MS.gene037441:CDS 40.0%
!! TTAGAGGAGAGTATTGTCTG+TGG - chr4.1:80842005-80842024 MS.gene037441:CDS 40.0%
!!! CGGGTTGATGATTTTGTTGT+TGG - chr4.1:80841555-80841574 MS.gene037441:CDS 40.0%
ACTCCAAGACAAGGCTGAAA+AGG - chr4.1:80841794-80841813 MS.gene037441:CDS 45.0%
CAAGCACAATCATTCCATGC+GGG - chr4.1:80841841-80841860 MS.gene037441:CDS 45.0%
CAAGGCTGAAAAGGAATACG+AGG - chr4.1:80841803-80841822 MS.gene037441:CDS 45.0%
CACCACCTATGCCTAGTATT+AGG + chr4.1:80841435-80841454 None:intergenic 45.0%
CATCCTTTATTACCCCCTGA+CGG - chr4.1:80840424-80840443 MS.gene037441:CDS 45.0%
CTATGAGATTGACATGGACG+AGG - chr4.1:80841101-80841120 MS.gene037441:CDS 45.0%
GAACAACCAGGTAAAGGACT+TGG + chr4.1:80841319-80841338 None:intergenic 45.0%
GCTTGAAACCCATCAGACAT+AGG + chr4.1:80842731-80842750 None:intergenic 45.0%
GGATTCGTCTTCAAAGTTGG+TGG + chr4.1:80840712-80840731 None:intergenic 45.0%
GGCTATGCAGAATGCAATTC+AGG - chr4.1:80841401-80841420 MS.gene037441:CDS 45.0%
GGTTGTTCGAAACATGGCTA+AGG - chr4.1:80841331-80841350 MS.gene037441:CDS 45.0%
TAAACGATCAGGCAGGTGTA+CGG - chr4.1:80840899-80840918 MS.gene037441:CDS 45.0%
TAGCCATGTTTCGAACAACC+AGG + chr4.1:80841331-80841350 None:intergenic 45.0%
TCATCCCAACAGTCAACTAG+TGG - chr4.1:80842776-80842795 MS.gene037441:CDS 45.0%
TCGGTTACAATTCCCATTGG+AGG + chr4.1:80841372-80841391 None:intergenic 45.0%
TCTTTCCCGCTCTTCGAAAA+TGG + chr4.1:80841634-80841653 None:intergenic 45.0%
TTACAGCCACATTGTGGTGT+GGG - chr4.1:80842398-80842417 MS.gene037441:CDS 45.0%
TTTACAGCCACATTGTGGTG+TGG - chr4.1:80842397-80842416 MS.gene037441:CDS 45.0%
TTTCGAAGAGCGGGAAAGAT+GGG - chr4.1:80841635-80841654 MS.gene037441:CDS 45.0%
! CCTCTGTGTTGTTGACATTC+CGG + chr4.1:80841691-80841710 None:intergenic 45.0%
! TCTCGAAGGTGTGACTACAT+TGG - chr4.1:80841959-80841978 MS.gene037441:CDS 45.0%
! TTTTCGAAGAGCGGGAAAGA+TGG - chr4.1:80841634-80841653 MS.gene037441:CDS 45.0%
AAACGATCAGGCAGGTGTAC+GGG - chr4.1:80840900-80840919 MS.gene037441:CDS 50.0%
ACACCAACAAACGGGGCAAA+TGG + chr4.1:80841240-80841259 None:intergenic 50.0%
AGAAAGACACCTTCTCGGGA+AGG - chr4.1:80841014-80841033 MS.gene037441:CDS 50.0%
ATGTCTTCGAGGCCTCCAAT+GGG - chr4.1:80841357-80841376 MS.gene037441:CDS 50.0%
CCGGAATGTCAACAACACAG+AGG - chr4.1:80841688-80841707 MS.gene037441:CDS 50.0%
CGGCATCACATACCATGGAA+CGG + chr4.1:80840939-80840958 None:intergenic 50.0%
CGTTCCATGGTATGTGATGC+CGG - chr4.1:80840937-80840956 MS.gene037441:CDS 50.0%
CTAGGCATAGGTGGTGTCTA+TGG - chr4.1:80841439-80841458 MS.gene037441:CDS 50.0%
GACGTCCTCGAACTAATCGT+CGG - chr4.1:80842510-80842529 MS.gene037441:CDS 50.0%
GGCTAAGGTGTATGTCTTCG+AGG - chr4.1:80841346-80841365 MS.gene037441:CDS 50.0%
TATGTCTTCGAGGCCTCCAA+TGG - chr4.1:80841356-80841375 MS.gene037441:CDS 50.0%
TCTCCGTCAGGGGGTAATAA+AGG + chr4.1:80840430-80840449 None:intergenic 50.0%
! AACTCTAAGAAAGGGGCCGA+TGG - chr4.1:80840628-80840647 MS.gene037441:intron 50.0%
! ATGCCATTTGCCCCGTTTGT+TGG - chr4.1:80841234-80841253 MS.gene037441:CDS 50.0%
! CGTGTTGACGTTTCGGATTC+CGG - chr4.1:80840469-80840488 MS.gene037441:CDS 50.0%
! CTGCATAGCCTTGCACTGAT+CGG + chr4.1:80841391-80841410 None:intergenic 50.0%
! GACAACCGACGATTAGTTCG+AGG + chr4.1:80842518-80842537 None:intergenic 50.0%
! GTGTTGACGTTTCGGATTCC+GGG - chr4.1:80840470-80840489 MS.gene037441:CDS 50.0%
! TGTGGCTCGTGTTGACGTTT+CGG - chr4.1:80840462-80840481 MS.gene037441:CDS 50.0%
!! TCTGATGGGTTTCAAGCGTC+CGG - chr4.1:80842734-80842753 MS.gene037441:CDS 50.0%
ACCACCGGCATCACATACCA+TGG + chr4.1:80840944-80840963 None:intergenic 55.0%
AGACACCTTCTCGGGAAGGA+AGG - chr4.1:80841018-80841037 MS.gene037441:CDS 55.0%
AGCCACATTGTGGTGTGGGA+GGG - chr4.1:80842402-80842421 MS.gene037441:CDS 55.0%
CATCTCCTTCCTTCCCGAGA+AGG + chr4.1:80841026-80841045 None:intergenic 55.0%
CGACAACGCACTCCAAGACA+AGG - chr4.1:80841785-80841804 MS.gene037441:CDS 55.0%
CTTCTCGGGAAGGAAGGAGA+TGG - chr4.1:80841024-80841043 MS.gene037441:CDS 55.0%
TCCATGGTATGTGATGCCGG+TGG - chr4.1:80840940-80840959 MS.gene037441:CDS 55.0%
TCTGGGCTGATGCACGTAGT+AGG - chr4.1:80841145-80841164 MS.gene037441:CDS 55.0%
! ATCAGCTAGCTCTCCGTCAG+GGG + chr4.1:80840440-80840459 None:intergenic 55.0%
! CATCAGCTAGCTCTCCGTCA+GGG + chr4.1:80840441-80840460 None:intergenic 55.0%
CAGCCACATTGTGGTGTGGG+AGG - chr4.1:80842401-80842420 MS.gene037441:CDS 60.0%
CCTGACGGAGAGCTAGCTGA+TGG - chr4.1:80840439-80840458 MS.gene037441:CDS 60.0%
CGGGAAGGAAGGAGATGGCA+GGG - chr4.1:80841029-80841048 MS.gene037441:CDS 60.0%
GCCACATTGTGGTGTGGGAG+GGG - chr4.1:80842403-80842422 MS.gene037441:CDS 60.0%
GTTCGAGGACGTCCCTTACG+TGG + chr4.1:80842503-80842522 None:intergenic 60.0%
TCCCCTCCCACACCACAATG+TGG + chr4.1:80842407-80842426 None:intergenic 60.0%
TCGGGAAGGAAGGAGATGGC+AGG - chr4.1:80841028-80841047 MS.gene037441:CDS 60.0%
! CCATCAGCTAGCTCTCCGTC+AGG + chr4.1:80840442-80840461 None:intergenic 60.0%
! CGGAGAGCTAGCTGATGGTG+TGG - chr4.1:80840444-80840463 MS.gene037441:CDS 60.0%
! TCAGCTAGCTCTCCGTCAGG+GGG + chr4.1:80840439-80840458 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 80840394 80842853 80840394 ID=MS.gene037441
chr4.1 mRNA 80840394 80842853 80840394 ID=MS.gene037441.t1;Parent=MS.gene037441
chr4.1 exon 80842703 80842853 80842703 ID=MS.gene037441.t1.exon1;Parent=MS.gene037441.t1
chr4.1 CDS 80842703 80842853 80842703 ID=cds.MS.gene037441.t1;Parent=MS.gene037441.t1
chr4.1 exon 80840640 80842678 80840640 ID=MS.gene037441.t1.exon2;Parent=MS.gene037441.t1
chr4.1 CDS 80840640 80842678 80840640 ID=cds.MS.gene037441.t1;Parent=MS.gene037441.t1
chr4.1 exon 80840394 80840531 80840394 ID=MS.gene037441.t1.exon3;Parent=MS.gene037441.t1
chr4.1 CDS 80840394 80840531 80840394 ID=cds.MS.gene037441.t1;Parent=MS.gene037441.t1
Gene Sequence

>MS.gene037441

ATGGCTGATGGTCCTCCTATATTGATCGATCATCCTTTATTACCCCCTGACGGAGAGCTAGCTGATGGTGTGGCTCGTGTTGACGTTTCGGATTCCGGGACCTTTGAAACAACAAATGCTGTCGCAACAGATAAATTCACGCCTACTATCGGTATGTCTTTTTAATCGGTTGTAGATTGTAAGTCTTTTTACCGTGAATATGCCATGAAACAAGGGTTTGCAATCAAAACTAGAAACTCTAAGAAAGGGGCCGATGGCATGTTAAAATATTTCATTCTAACTTGTGCAAGAGAAGGTCACCATGAATCAAACATACCACCAACTTTGAAGACGAATCCAACGAAGAAACTTGATTGCTCAGCTAAGATAACGGTTGCTTTAAAGAAGGGTCTATGGACTATTTTGTCTTTTAATTCATGTCATAATCATGAGATAAGTCCAACTAAATCACGGTTGTTTGCTGGCAATAAGAAGATTGATATGCATGCACAGCGGACAATTTTGATAAACGATCAGGCAGGTGTACGGGTGAACAAAAGTTTCCGTTCCATGGTATGTGATGCCGGTGGTTACGAAAATCTAACATTTGTGGAGAGAGATGTCAGAAACTTTGTGGCAAAAGAAAGACACCTTCTCGGGAAGGAAGGAGATGGCAGGGCACTTTTATCCTACTTTGCTAGAATGAGGGAATGCAACAAAGACTTTTTCTATGAGATTGACATGGACGAGGACTTTCATGTGCAGAATATTTTCTGGGCTGATGCACGTAGTAGGTCTGCCTATGAATACTTTGGTGATGTTGTCACATTCGATACCACGTACTTGACAAACAAGTATGACATGCCATTTGCCCCGTTTGTTGGTGTCAATCATCATGGGCAATCCATTTTACTAGGTTGCGGTCTTTTATCATCTGAAGATACCAAGTCCTTTACCTGGTTGTTCGAAACATGGCTAAGGTGTATGTCTTCGAGGCCTCCAATGGGAATTGTAACCGATCAGTGCAAGGCTATGCAGAATGCAATTCAGGTTGTGTTTCCTAATACTAGGCATAGGTGGTGTCTATGGCATATAATGAGAAAAATTGCCGAAAAATTGAAAGGATACGCACAATACAAAGGAATAAAAAATGATATGAAAAATTGTGTGTATGATTCTCTGCGGGTTGATGATTTTGTTGTTGGGTGGACAACATTCATTGAAAAATATGGTTTGGGTGAAAATGATTGGTTGAATACCATTTTCGAAGAGCGGGAAAGATGGGTGCCATGTTATTTAAAAAATGATTTCTGGGCCGGAATGTCAACAACACAGAGGAGTGAAAGTATGAATGCTTTTTTCGATGGTTACATTAATGCAAGAACTTCTCTAAGCGAATTTGTAAAGCAATACGACAACGCACTCCAAGACAAGGCTGAAAAGGAATACGAGGCAGATTTTCGGTCTTCAAGCACAATCATTCCATGCGGGTCAAATTCAACAATCGAGAGACAATTTCAAGCCGAGTACACCCATGACAAGTATATGGAGATACAAGTAGAATTTCGTGGGAAATGCAACTGTTATCTCGAAGGTGTGACTACATTGGAATTTACATCTACATACACCGTTTTAGAGGAGAGTATTGTCTGTGGTAAACCGAACGAAACTAAGTATTGTGTTGATTTCAACGGGGAAGACAATAATGTTACGTGCACTTGTTTGTTGTTTGAGTTCAGAGGCATTTTGTGTAGACATGCCTTTTTTGTACTTGGTCATCTTAGAGTGAAAGAGGTTCCGTCTAAATTTATCTTGCCACGATGGAGTAAAAATGTGAAGAGAAAATATGCACACATGAAGACAAGTTACAATGCCAAAAAACTACAACCACACATTGAAAGATTTGAAGGTCTTTGCAAGACATTTTATGAAATTGCAGAATGTGCGGCTGAGACACCTAGTCAAACCTCTGATTTGTATGAAGAAATGATCAAATGGTCTACCAAGAAGTTGGGCAAAATGAGTTTACAGCCACATTGTGGTGTGGGAGGGGATCATAGCTTAAACACGATGGAGGACTCATTATCAATGCAACCTGATCAACCAATTCTTAATCCGTTAAAAGTACCACGTAAGGGACGTCCTCGAACTAATCGTCGGTTGTCCACCACTGAAAAGATTGTGAAAAAAAGAAGCAAAATGCAAAGAAAAAAACCAATTGTTTCGGTTGTCGAAGTAAGTTGGTGTTAACCTATTATTATTGTGATTACATTTGTTTTTTTAATAATAATACAATGTTAATTATGTTAAATGTAATTAATATTTCACTCTGTAATACTACAGCCTACATTACTTCCTATGTCTGATGGGTTTCAAGCGTCCGGTGATACGCTTAACTACTTCTCATCCCAACAGTCAACTAGTGGTTTTATGTCATTACTTGCATCAATGAGCAAAGATGTGGACGCAGCTGAATTTTAA
Protein sequence

>MS.gene037441.t1

MADGPPILIDHPLLPPDGELADGVARVDVSDSGTFETTNAVATDKFTPTIDCKSFYREYAMKQGFAIKTRNSKKGADGMLKYFILTCAREGHHESNIPPTLKTNPTKKLDCSAKITVALKKGLWTILSFNSCHNHEISPTKSRLFAGNKKIDMHAQRTILINDQAGVRVNKSFRSMVCDAGGYENLTFVERDVRNFVAKERHLLGKEGDGRALLSYFARMRECNKDFFYEIDMDEDFHVQNIFWADARSRSAYEYFGDVVTFDTTYLTNKYDMPFAPFVGVNHHGQSILLGCGLLSSEDTKSFTWLFETWLRCMSSRPPMGIVTDQCKAMQNAIQVVFPNTRHRWCLWHIMRKIAEKLKGYAQYKGIKNDMKNCVYDSLRVDDFVVGWTTFIEKYGLGENDWLNTIFEERERWVPCYLKNDFWAGMSTTQRSESMNAFFDGYINARTSLSEFVKQYDNALQDKAEKEYEADFRSSSTIIPCGSNSTIERQFQAEYTHDKYMEIQVEFRGKCNCYLEGVTTLEFTSTYTVLEESIVCGKPNETKYCVDFNGEDNNVTCTCLLFEFRGILCRHAFFVLGHLRVKEVPSKFILPRWSKNVKRKYAHMKTSYNAKKLQPHIERFEGLCKTFYEIAECAAETPSQTSDLYEEMIKWSTKKLGKMSLQPHCGVGGDHSLNTMEDSLSMQPDQPILNPLKVPRKGRPRTNRRLSTTEKIVKKRSKMQRKKPIVSVVEPTLLPMSDGFQASGDTLNYFSSQQSTSGFMSLLASMSKDVDAAEF