Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037460.t1 | XP_003604663.1 | 93.9 | 279 | 14 | 1 | 1 | 276 | 1 | 279 | 3.50E-84 | 321.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037460.t1 | O80450 | 62.5 | 285 | 97 | 2 | 1 | 275 | 1 | 285 | 1.2e-43 | 178.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037460.t1 | G7JN34 | 93.9 | 279 | 14 | 1 | 1 | 276 | 1 | 279 | 2.5e-84 | 321.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037460.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037460.t1 | MTR_4g015680 | 93.190 | 279 | 16 | 1 | 1 | 276 | 1 | 279 | 4.96e-157 | 438 |
| MS.gene037460.t1 | MTR_7g068770 | 74.319 | 257 | 64 | 2 | 22 | 276 | 35 | 291 | 1.14e-109 | 319 |
| MS.gene037460.t1 | MTR_5g026540 | 48.828 | 256 | 110 | 6 | 37 | 273 | 44 | 297 | 2.03e-56 | 183 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037460.t1 | AT2G38250 | 55.731 | 253 | 105 | 2 | 30 | 275 | 33 | 285 | 1.64e-70 | 219 |
| MS.gene037460.t1 | AT5G01380 | 52.256 | 266 | 103 | 4 | 34 | 275 | 47 | 312 | 8.68e-67 | 211 |
| MS.gene037460.t1 | AT3G25990 | 31.858 | 113 | 74 | 1 | 39 | 148 | 55 | 167 | 5.81e-14 | 71.6 |
| MS.gene037460.t1 | AT1G13450 | 30.631 | 111 | 77 | 0 | 39 | 149 | 87 | 197 | 2.23e-12 | 66.2 |
| MS.gene037460.t1 | AT1G13450 | 30.631 | 111 | 77 | 0 | 39 | 149 | 87 | 197 | 2.23e-12 | 66.2 |
| MS.gene037460.t1 | AT1G13450 | 30.631 | 111 | 77 | 0 | 39 | 149 | 87 | 197 | 3.20e-12 | 66.6 |
| MS.gene037460.t1 | AT1G13450 | 30.631 | 111 | 77 | 0 | 39 | 149 | 87 | 197 | 3.52e-12 | 65.1 |
Find 53 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGGAATTTGAAGGAAATTT+TGG | 0.113135 | 4.1:+80565676 | MS.gene037460:CDS |
| GTTTGAAGTTCATTGTAAAA+TGG | 0.240816 | 4.1:-80565455 | None:intergenic |
| CCAAAATTTCCTTCAAATTC+CGG | 0.246461 | 4.1:-80565676 | None:intergenic |
| TACACTGTTCTGCACTTCTA+TGG | 0.273481 | 4.1:-80564123 | None:intergenic |
| GTTGTTGTTGATGTTGTCTT+TGG | 0.290505 | 4.1:-80563913 | None:intergenic |
| AAACTTTCATGGAGACTAAA+AGG | 0.293357 | 4.1:+80564050 | MS.gene037460:CDS |
| AAACCTTGTTACTCGATATA+AGG | 0.327763 | 4.1:+80564159 | MS.gene037460:CDS |
| TGAAAGGAGGTTGAGGGAGA+TGG | 0.392114 | 4.1:+80565766 | MS.gene037460:CDS |
| AGAGAATGAGAGGTTATTGA+TGG | 0.399948 | 4.1:+80565814 | MS.gene037460:CDS |
| ACGTTGTTGATGTTTCTGAT+AGG | 0.411226 | 4.1:+80563966 | MS.gene037460:CDS |
| TTCCAACCATATGAAGGAAA+AGG | 0.414450 | 4.1:+80564096 | MS.gene037460:CDS |
| GGAGCTTGATCAAACTTTCA+TGG | 0.426540 | 4.1:+80564039 | MS.gene037460:CDS |
| GAGAGAATGAAAGGAGGTTG+AGG | 0.427005 | 4.1:+80565759 | MS.gene037460:CDS |
| TGGAACAAAGATGGAGAGAA+AGG | 0.438127 | 4.1:+80565834 | MS.gene037460:CDS |
| AGAGAATGAAAGGAGGTTGA+GGG | 0.438616 | 4.1:+80565760 | MS.gene037460:CDS |
| TCCAACCATATGAAGGAAAA+GGG | 0.443984 | 4.1:+80564097 | MS.gene037460:CDS |
| AAGTGAAGCAGTGTCTCAAA+AGG | 0.452908 | 4.1:+80565589 | MS.gene037460:CDS |
| CAAGGATGCAAAGAATGTTA+TGG | 0.456689 | 4.1:+80565489 | MS.gene037460:CDS |
| GGAGTATAAGAGAAGAAGCT+AGG | 0.465680 | 4.1:+80565867 | MS.gene037460:CDS |
| GTAGTAGCAAAAGTTTCTTC+CGG | 0.476942 | 4.1:+80565657 | MS.gene037460:CDS |
| GGAGGTTGAGGGAGATGGAG+TGG | 0.477709 | 4.1:+80565771 | MS.gene037460:CDS |
| AGTTATTTCCAACCATATGA+AGG | 0.482469 | 4.1:+80564090 | MS.gene037460:CDS |
| AAGTTTCTTCCGGAATTTGA+AGG | 0.486534 | 4.1:+80565667 | MS.gene037460:CDS |
| CTTCATCGTCATCGGTTGAA+AGG | 0.490067 | 4.1:-80565550 | None:intergenic |
| AAGAAGCTAGGGCTGAGAAG+AGG | 0.496506 | 4.1:+80565879 | MS.gene037460:CDS |
| GGTTATTGATGGAACAAAGA+TGG | 0.509077 | 4.1:+80565825 | MS.gene037460:CDS |
| AGAAGCTAGGGCTGAGAAGA+GGG | 0.509525 | 4.1:+80565880 | MS.gene037460:CDS |
| TAAAAGGAACAAACAATTGT+GGG | 0.514530 | 4.1:+80564066 | MS.gene037460:CDS |
| GGAACAAAGATGGAGAGAAA+GGG | 0.522554 | 4.1:+80565835 | MS.gene037460:CDS |
| GCAAATTGAAGCACAATGGA+TGG | 0.527054 | 4.1:+80565721 | MS.gene037460:CDS |
| GAGTATAAGAGAAGAAGCTA+GGG | 0.529590 | 4.1:+80565868 | MS.gene037460:CDS |
| GATGGAGTGGAGACAACAAA+TGG | 0.535582 | 4.1:+80565784 | MS.gene037460:CDS |
| CAGAACAGTGTAAGTGCAAG+TGG | 0.539152 | 4.1:+80564134 | MS.gene037460:CDS |
| TTATGGACTAAAGCTGAAGA+AGG | 0.553274 | 4.1:+80565506 | MS.gene037460:CDS |
| GGAGAGAAAGGGAAGAACAA+AGG | 0.557998 | 4.1:+80565846 | MS.gene037460:CDS |
| TGGAAGTGTTAGAGAATGAG+AGG | 0.559302 | 4.1:+80565804 | MS.gene037460:CDS |
| TTGAAGCAAGAGAGAATGAA+AGG | 0.568271 | 4.1:+80565750 | MS.gene037460:CDS |
| AGTGAAGCAGTGTCTCAAAA+GGG | 0.570275 | 4.1:+80565590 | MS.gene037460:CDS |
| ACCATCGTCTTCATCGTCAT+CGG | 0.570363 | 4.1:-80565558 | None:intergenic |
| AAGCAAGAGAGAATGAAAGG+AGG | 0.580861 | 4.1:+80565753 | MS.gene037460:CDS |
| TGAAGAAGGATCGAAGAAGA+AGG | 0.591569 | 4.1:+80565520 | MS.gene037460:CDS |
| GCAAAGGTAGACAGCGAAAG+CGG | 0.602051 | 4.1:+80565635 | MS.gene037460:CDS |
| TAACATTCTTTGCATCCTTG+CGG | 0.602220 | 4.1:-80565486 | None:intergenic |
| AATTGCAAATTGAAGCACAA+TGG | 0.602440 | 4.1:+80565717 | MS.gene037460:CDS |
| TTTCTGATAGGTTTCCTCAG+TGG | 0.605665 | 4.1:+80563978 | MS.gene037460:CDS |
| GTAAAAGGGATGTGAAACAC+TGG | 0.606650 | 4.1:+80565406 | MS.gene037460:intron |
| CTAAAAGGAACAAACAATTG+TGG | 0.626693 | 4.1:+80564065 | MS.gene037460:CDS |
| GTGGAGCATACAAGAGACGA+GGG | 0.645056 | 4.1:+80563997 | MS.gene037460:CDS |
| AGTGGAGCATACAAGAGACG+AGG | 0.673401 | 4.1:+80563996 | MS.gene037460:CDS |
| GGAGTTTCTGATGATTCGAG+CGG | 0.680605 | 4.1:+80564018 | MS.gene037460:CDS |
| ATACCTTATATCGAGTAACA+AGG | 0.693644 | 4.1:-80564162 | None:intergenic |
| ACCGATGACGATGAAGACGA+TGG | 0.696270 | 4.1:+80565557 | MS.gene037460:CDS |
| GTCTCTTGTATGCTCCACTG+AGG | 0.764902 | 4.1:-80563992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTAATTAATATAAATTCAT+AGG | - | chr4.1:80564939-80564958 | None:intergenic | 10.0% |
| !! | ATAAAATAGTTAAGATTAAT+TGG | + | chr4.1:80565068-80565087 | MS.gene037460:intron | 10.0% |
| !! | ATTAATTAACAATAAGAAAA+GGG | - | chr4.1:80564398-80564417 | None:intergenic | 10.0% |
| !! | TTATTCATATATTTCATATT+TGG | + | chr4.1:80564195-80564214 | MS.gene037460:intron | 10.0% |
| !! | GATTAATTAACAATAAGAAA+AGG | - | chr4.1:80564399-80564418 | None:intergenic | 15.0% |
| !! | GTGATATAGAAAATTAATAT+CGG | + | chr4.1:80565168-80565187 | MS.gene037460:intron | 15.0% |
| !! | TAAATATTGCATTATATAAG+TGG | - | chr4.1:80564880-80564899 | None:intergenic | 15.0% |
| !!! | TAATCTTAACTATTTTATTG+AGG | - | chr4.1:80565066-80565085 | None:intergenic | 15.0% |
| !!! | TTATTTTTTGACATGTAAAA+GGG | + | chr4.1:80565392-80565411 | MS.gene037460:intron | 15.0% |
| !!! | TTTATTTTTTGACATGTAAA+AGG | + | chr4.1:80565391-80565410 | MS.gene037460:intron | 15.0% |
| !! | TCACAAAATTATCAATAGAA+TGG | - | chr4.1:80565152-80565171 | None:intergenic | 20.0% |
| !! | TTAGTCTACTAAATATCATA+AGG | + | chr4.1:80564464-80564483 | MS.gene037460:intron | 20.0% |
| !!! | ATTTTCTTCATCACAAAATT+TGG | + | chr4.1:80565264-80565283 | MS.gene037460:intron | 20.0% |
| ! | ACTTTATGATACTTACAACA+TGG | + | chr4.1:80564786-80564805 | MS.gene037460:intron | 25.0% |
| ! | ATTAGTGTTAATGTAAGCAA+AGG | + | chr4.1:80565116-80565135 | MS.gene037460:intron | 25.0% |
| ! | CTTTATGATACTTACAACAT+GGG | + | chr4.1:80564787-80564806 | MS.gene037460:intron | 25.0% |
| ! | TAAAAGGAACAAACAATTGT+GGG | + | chr4.1:80564066-80564085 | MS.gene037460:CDS | 25.0% |
| !! | AAATTTTGGATGATTTCATG+AGG | + | chr4.1:80565690-80565709 | MS.gene037460:CDS | 25.0% |
| !! | AAGTTAAGATTTTTGTTGCA+TGG | + | chr4.1:80565333-80565352 | MS.gene037460:intron | 25.0% |
| !! | ATAGGTTTTTATATGTGCTA+AGG | + | chr4.1:80565360-80565379 | MS.gene037460:intron | 25.0% |
| !! | GTTTGAAGTTCATTGTAAAA+TGG | - | chr4.1:80565458-80565477 | None:intergenic | 25.0% |
| !! | TAGGTTTTTATATGTGCTAA+GGG | + | chr4.1:80565361-80565380 | MS.gene037460:intron | 25.0% |
| !!! | TTTTTGTTGCATGGTTTTAT+AGG | + | chr4.1:80565342-80565361 | MS.gene037460:intron | 25.0% |
| AAACCTTGTTACTCGATATA+AGG | + | chr4.1:80564159-80564178 | MS.gene037460:CDS | 30.0% | |
| AAACTTTCATGGAGACTAAA+AGG | + | chr4.1:80564050-80564069 | MS.gene037460:CDS | 30.0% | |
| AAATATCATAAGGTGTGAAC+TGG | + | chr4.1:80564474-80564493 | MS.gene037460:intron | 30.0% | |
| AATATCATAAGGTGTGAACT+GGG | + | chr4.1:80564475-80564494 | MS.gene037460:intron | 30.0% | |
| AATTGCAAATTGAAGCACAA+TGG | + | chr4.1:80565717-80565736 | MS.gene037460:CDS | 30.0% | |
| ATACCTTATATCGAGTAACA+AGG | - | chr4.1:80564165-80564184 | None:intergenic | 30.0% | |
| ATGTAAATCATGTATCCATC+TGG | - | chr4.1:80564311-80564330 | None:intergenic | 30.0% | |
| ATTCTAAGTCCAAAATCCAA+GGG | - | chr4.1:80564583-80564602 | None:intergenic | 30.0% | |
| CAGAAAGAAGAAAAAAGCAA+AGG | + | chr4.1:80565619-80565638 | MS.gene037460:CDS | 30.0% | |
| CCAAAATTTCCTTCAAATTC+CGG | - | chr4.1:80565679-80565698 | None:intergenic | 30.0% | |
| CTAAAACACGCTATAATATG+AGG | - | chr4.1:80564975-80564994 | None:intergenic | 30.0% | |
| CTAAAAGGAACAAACAATTG+TGG | + | chr4.1:80564065-80564084 | MS.gene037460:CDS | 30.0% | |
| CTAATGTTTATCCATATGCT+TGG | - | chr4.1:80564448-80564467 | None:intergenic | 30.0% | |
| TATTCTAAGTCCAAAATCCA+AGG | - | chr4.1:80564584-80564603 | None:intergenic | 30.0% | |
| TCTTATCAAATAATCAGTGC+TGG | + | chr4.1:80564522-80564541 | MS.gene037460:intron | 30.0% | |
| TGTAAATCATGTATCCATCT+GGG | - | chr4.1:80564310-80564329 | None:intergenic | 30.0% | |
| ! | AGTTATTTCCAACCATATGA+AGG | + | chr4.1:80564090-80564109 | MS.gene037460:CDS | 30.0% |
| ! | CTCATATTATAGCGTGTTTT+AGG | + | chr4.1:80564973-80564992 | MS.gene037460:intron | 30.0% |
| AAGTTTCTTCCGGAATTTGA+AGG | + | chr4.1:80565667-80565686 | MS.gene037460:CDS | 35.0% | |
| ACTTTGTCATGAAGCAAAGA+TGG | + | chr4.1:80564753-80564772 | MS.gene037460:intron | 35.0% | |
| AGAGAATGAGAGGTTATTGA+TGG | + | chr4.1:80565814-80565833 | MS.gene037460:CDS | 35.0% | |
| CAAGGATGCAAAGAATGTTA+TGG | + | chr4.1:80565489-80565508 | MS.gene037460:CDS | 35.0% | |
| GAGTATAAGAGAAGAAGCTA+GGG | + | chr4.1:80565868-80565887 | MS.gene037460:CDS | 35.0% | |
| GGTTATTGATGGAACAAAGA+TGG | + | chr4.1:80565825-80565844 | MS.gene037460:CDS | 35.0% | |
| GTAAATCATGTATCCATCTG+GGG | - | chr4.1:80564309-80564328 | None:intergenic | 35.0% | |
| GTAGTAGCAAAAGTTTCTTC+CGG | + | chr4.1:80565657-80565676 | MS.gene037460:CDS | 35.0% | |
| TAACATTCTTTGCATCCTTG+CGG | - | chr4.1:80565489-80565508 | None:intergenic | 35.0% | |
| TCCAACCATATGAAGGAAAA+GGG | + | chr4.1:80564097-80564116 | MS.gene037460:CDS | 35.0% | |
| TTCCAACCATATGAAGGAAA+AGG | + | chr4.1:80564096-80564115 | MS.gene037460:CDS | 35.0% | |
| TTGAAGCAAGAGAGAATGAA+AGG | + | chr4.1:80565750-80565769 | MS.gene037460:CDS | 35.0% | |
| TTTAGGCCTCAAAATGTGTT+AGG | + | chr4.1:80564990-80565009 | MS.gene037460:intron | 35.0% | |
| ! | ACGTTGTTGATGTTTCTGAT+AGG | + | chr4.1:80563966-80563985 | MS.gene037460:CDS | 35.0% |
| ! | CCGGAATTTGAAGGAAATTT+TGG | + | chr4.1:80565676-80565695 | MS.gene037460:CDS | 35.0% |
| ! | CTTCATCACAAAATTTGGTG+AGG | + | chr4.1:80565269-80565288 | MS.gene037460:intron | 35.0% |
| ! | GTTGTTGTTGATGTTGTCTT+TGG | - | chr4.1:80563916-80563935 | None:intergenic | 35.0% |
| ! | GTTTTTATATGTGCTAAGGG+TGG | + | chr4.1:80565364-80565383 | MS.gene037460:intron | 35.0% |
| ! | TTATGGACTAAAGCTGAAGA+AGG | + | chr4.1:80565506-80565525 | MS.gene037460:CDS | 35.0% |
| ! | TTCAAACAATTTTCACCGCA+AGG | + | chr4.1:80565471-80565490 | MS.gene037460:CDS | 35.0% |
| !!! | GTTGTCTTTGGTTTTTGTGA+TGG | - | chr4.1:80563904-80563923 | None:intergenic | 35.0% |
| AAATTGTCACGCCAAGCATA+TGG | + | chr4.1:80564434-80564453 | MS.gene037460:intron | 40.0% | |
| AAGCAAGAGAGAATGAAAGG+AGG | + | chr4.1:80565753-80565772 | MS.gene037460:CDS | 40.0% | |
| AAGTGAAGCAGTGTCTCAAA+AGG | + | chr4.1:80565589-80565608 | MS.gene037460:CDS | 40.0% | |
| AGAGAATGAAAGGAGGTTGA+GGG | + | chr4.1:80565760-80565779 | MS.gene037460:CDS | 40.0% | |
| AGTGAAGCAGTGTCTCAAAA+GGG | + | chr4.1:80565590-80565609 | MS.gene037460:CDS | 40.0% | |
| GCAAATTGAAGCACAATGGA+TGG | + | chr4.1:80565721-80565740 | MS.gene037460:CDS | 40.0% | |
| GGAACAAAGATGGAGAGAAA+GGG | + | chr4.1:80565835-80565854 | MS.gene037460:CDS | 40.0% | |
| GGAGCTTGATCAAACTTTCA+TGG | + | chr4.1:80564039-80564058 | MS.gene037460:CDS | 40.0% | |
| GGAGTATAAGAGAAGAAGCT+AGG | + | chr4.1:80565867-80565886 | MS.gene037460:CDS | 40.0% | |
| GTAAAAGGGATGTGAAACAC+TGG | + | chr4.1:80565406-80565425 | MS.gene037460:intron | 40.0% | |
| TACACTGTTCTGCACTTCTA+TGG | - | chr4.1:80564126-80564145 | None:intergenic | 40.0% | |
| TGAAGAAGGATCGAAGAAGA+AGG | + | chr4.1:80565520-80565539 | MS.gene037460:CDS | 40.0% | |
| TGGAACAAAGATGGAGAGAA+AGG | + | chr4.1:80565834-80565853 | MS.gene037460:CDS | 40.0% | |
| TTTCTGATAGGTTTCCTCAG+TGG | + | chr4.1:80563978-80563997 | MS.gene037460:CDS | 40.0% | |
| ! | ACCCTTTTCCTTCATATGGT+TGG | - | chr4.1:80564101-80564120 | None:intergenic | 40.0% |
| ! | GGTAACCCTTTTCCTTCATA+TGG | - | chr4.1:80564105-80564124 | None:intergenic | 40.0% |
| !! | AAATAATCAGTGCTGGCCTA+AGG | + | chr4.1:80564529-80564548 | MS.gene037460:intron | 40.0% |
| !! | AATAATCAGTGCTGGCCTAA+GGG | + | chr4.1:80564530-80564549 | MS.gene037460:intron | 40.0% |
| !! | TGGAAGTGTTAGAGAATGAG+AGG | + | chr4.1:80565804-80565823 | MS.gene037460:CDS | 40.0% |
| ACCATCGTCTTCATCGTCAT+CGG | - | chr4.1:80565561-80565580 | None:intergenic | 45.0% | |
| CAGAACAGTGTAAGTGCAAG+TGG | + | chr4.1:80564134-80564153 | MS.gene037460:CDS | 45.0% | |
| GAGAGAATGAAAGGAGGTTG+AGG | + | chr4.1:80565759-80565778 | MS.gene037460:CDS | 45.0% | |
| GATGGAGTGGAGACAACAAA+TGG | + | chr4.1:80565784-80565803 | MS.gene037460:CDS | 45.0% | |
| GGAGAGAAAGGGAAGAACAA+AGG | + | chr4.1:80565846-80565865 | MS.gene037460:CDS | 45.0% | |
| GGAGTTTCTGATGATTCGAG+CGG | + | chr4.1:80564018-80564037 | MS.gene037460:CDS | 45.0% | |
| TATGATCTAAGCTCCCCAGA+TGG | + | chr4.1:80564293-80564312 | MS.gene037460:intron | 45.0% | |
| ! | CTTCATCGTCATCGGTTGAA+AGG | - | chr4.1:80565553-80565572 | None:intergenic | 45.0% |
| ! | GTGCGACCTAACACATTTTG+AGG | - | chr4.1:80564999-80565018 | None:intergenic | 45.0% |
| AAATCCAAGGGCCTAAAGCG+AGG | - | chr4.1:80564571-80564590 | None:intergenic | 50.0% | |
| AAGAAGCTAGGGCTGAGAAG+AGG | + | chr4.1:80565879-80565898 | MS.gene037460:CDS | 50.0% | |
| AATCCAAGGGCCTAAAGCGA+GGG | - | chr4.1:80564570-80564589 | None:intergenic | 50.0% | |
| ACCGATGACGATGAAGACGA+TGG | + | chr4.1:80565557-80565576 | MS.gene037460:CDS | 50.0% | |
| AGAAGCTAGGGCTGAGAAGA+GGG | + | chr4.1:80565880-80565899 | MS.gene037460:CDS | 50.0% | |
| AGTGGAGCATACAAGAGACG+AGG | + | chr4.1:80563996-80564015 | MS.gene037460:CDS | 50.0% | |
| GCAAAGGTAGACAGCGAAAG+CGG | + | chr4.1:80565635-80565654 | MS.gene037460:CDS | 50.0% | |
| GCTTGGATTGCCTTACCCTT+AGG | - | chr4.1:80564548-80564567 | None:intergenic | 50.0% | |
| GTCTCTTGTATGCTCCACTG+AGG | - | chr4.1:80563995-80564014 | None:intergenic | 50.0% | |
| GTGGAGCATACAAGAGACGA+GGG | + | chr4.1:80563997-80564016 | MS.gene037460:CDS | 50.0% | |
| TGAAAGGAGGTTGAGGGAGA+TGG | + | chr4.1:80565766-80565785 | MS.gene037460:CDS | 50.0% | |
| TTCCGTCAGTGCTGCACTTA+CGG | + | chr4.1:80564849-80564868 | MS.gene037460:intron | 50.0% | |
| !! | CGCTTTAGGCCCTTGGATTT+TGG | + | chr4.1:80564571-80564590 | MS.gene037460:intron | 50.0% |
| GCAATCCAAGCCCTCGCTTT+AGG | + | chr4.1:80564557-80564576 | MS.gene037460:intron | 55.0% | |
| ! | TGCCGTAAGTGCAGCACTGA+CGG | - | chr4.1:80564854-80564873 | None:intergenic | 55.0% |
| !! | TCAGTGCTGGCCTAAGGGTA+AGG | + | chr4.1:80564535-80564554 | MS.gene037460:intron | 55.0% |
| AAGGGCCTAAAGCGAGGGCT+TGG | - | chr4.1:80564565-80564584 | None:intergenic | 60.0% | |
| GGAGGTTGAGGGAGATGGAG+TGG | + | chr4.1:80565771-80565790 | MS.gene037460:CDS | 60.0% | |
| ! | AAGCCCTCGCTTTAGGCCCT+TGG | + | chr4.1:80564564-80564583 | MS.gene037460:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 80563884 | 80565946 | 80563884 | ID=MS.gene037460 |
| chr4.1 | mRNA | 80563884 | 80565946 | 80563884 | ID=MS.gene037460.t1;Parent=MS.gene037460 |
| chr4.1 | exon | 80563884 | 80564180 | 80563884 | ID=MS.gene037460.t1.exon1;Parent=MS.gene037460.t1 |
| chr4.1 | CDS | 80563884 | 80564180 | 80563884 | ID=cds.MS.gene037460.t1;Parent=MS.gene037460.t1 |
| chr4.1 | exon | 80565413 | 80565946 | 80565413 | ID=MS.gene037460.t1.exon2;Parent=MS.gene037460.t1 |
| chr4.1 | CDS | 80565413 | 80565946 | 80565413 | ID=cds.MS.gene037460.t1;Parent=MS.gene037460.t1 |
| Gene Sequence |
| Protein sequence |
