Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037663.t1 | XP_013454907.1 | 94.3 | 300 | 14 | 1 | 1 | 300 | 276 | 572 | 7.90E-114 | 420.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037663.t1 | Q9LZM8 | 68.4 | 171 | 42 | 4 | 1 | 159 | 252 | 422 | 2.6e-57 | 223.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037663.t1 | A0A072USU8 | 94.3 | 300 | 14 | 1 | 1 | 300 | 276 | 572 | 5.7e-114 | 420.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037663.t1 | TF | HB-BELL |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037663.t1 | MTR_4g019450 | 96.667 | 300 | 7 | 1 | 1 | 300 | 276 | 572 | 0.0 | 606 |
| MS.gene037663.t1 | MTR_7g065050 | 61.565 | 294 | 81 | 7 | 1 | 293 | 221 | 483 | 1.30e-117 | 348 |
| MS.gene037663.t1 | MTR_2g095050 | 51.832 | 191 | 76 | 2 | 1 | 176 | 340 | 529 | 2.44e-57 | 194 |
| MS.gene037663.t1 | MTR_8g078480 | 55.495 | 182 | 70 | 4 | 1 | 173 | 485 | 664 | 6.08e-57 | 196 |
| MS.gene037663.t1 | MTR_5g018860 | 51.872 | 187 | 80 | 3 | 1 | 179 | 434 | 618 | 4.96e-55 | 190 |
| MS.gene037663.t1 | MTR_7g106320 | 48.744 | 199 | 76 | 4 | 1 | 185 | 271 | 457 | 4.34e-53 | 184 |
| MS.gene037663.t1 | MTR_1g023050 | 50.296 | 169 | 80 | 1 | 1 | 169 | 276 | 440 | 4.00e-52 | 181 |
| MS.gene037663.t1 | MTR_8g098815 | 55.828 | 163 | 48 | 3 | 1 | 148 | 279 | 432 | 1.97e-51 | 179 |
| MS.gene037663.t1 | MTR_1g057790 | 55.769 | 156 | 52 | 2 | 1 | 146 | 259 | 407 | 5.00e-51 | 178 |
| MS.gene037663.t1 | MTR_4g051532 | 50.562 | 178 | 81 | 3 | 1 | 173 | 315 | 490 | 9.65e-51 | 178 |
| MS.gene037663.t1 | MTR_3g112300 | 51.613 | 155 | 71 | 1 | 1 | 155 | 265 | 415 | 3.81e-49 | 171 |
| MS.gene037663.t1 | MTR_3g112300 | 51.613 | 155 | 71 | 1 | 1 | 155 | 265 | 415 | 4.90e-49 | 172 |
| MS.gene037663.t1 | MTR_3g112290 | 46.857 | 175 | 75 | 3 | 1 | 163 | 258 | 426 | 9.86e-49 | 168 |
| MS.gene037663.t1 | MTR_3g112300 | 46.212 | 132 | 67 | 1 | 1 | 132 | 265 | 392 | 1.02e-33 | 127 |
| MS.gene037663.t1 | MTR_1g016490 | 38.728 | 173 | 94 | 4 | 1 | 173 | 343 | 503 | 3.17e-33 | 127 |
| MS.gene037663.t1 | MTR_3g112300 | 41.441 | 111 | 61 | 1 | 1 | 111 | 265 | 371 | 9.88e-22 | 94.4 |
| MS.gene037663.t1 | MTR_5g033720 | 56.250 | 48 | 21 | 0 | 99 | 146 | 249 | 296 | 9.55e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037663.t1 | AT5G02030 | 68.452 | 168 | 41 | 4 | 1 | 156 | 252 | 419 | 6.87e-71 | 229 |
| MS.gene037663.t1 | AT2G27990 | 58.385 | 161 | 62 | 2 | 1 | 161 | 345 | 500 | 1.60e-55 | 189 |
| MS.gene037663.t1 | AT4G34610 | 53.714 | 175 | 70 | 5 | 1 | 170 | 229 | 397 | 1.01e-52 | 181 |
| MS.gene037663.t1 | AT4G34610 | 53.714 | 175 | 70 | 5 | 1 | 170 | 229 | 397 | 1.01e-52 | 181 |
| MS.gene037663.t1 | AT4G34610 | 53.714 | 175 | 70 | 5 | 1 | 170 | 229 | 397 | 1.01e-52 | 181 |
| MS.gene037663.t1 | AT4G34610 | 53.714 | 175 | 70 | 5 | 1 | 170 | 229 | 397 | 1.01e-52 | 181 |
| MS.gene037663.t1 | AT2G16400 | 47.525 | 202 | 90 | 4 | 1 | 186 | 196 | 397 | 1.54e-52 | 179 |
| MS.gene037663.t1 | AT4G36870 | 57.669 | 163 | 56 | 4 | 1 | 152 | 405 | 565 | 1.76e-52 | 183 |
| MS.gene037663.t1 | AT4G36870 | 57.669 | 163 | 56 | 4 | 1 | 152 | 405 | 565 | 1.76e-52 | 183 |
| MS.gene037663.t1 | AT2G23760 | 56.442 | 163 | 58 | 4 | 1 | 152 | 331 | 491 | 2.81e-51 | 178 |
| MS.gene037663.t1 | AT2G23760 | 56.442 | 163 | 58 | 4 | 1 | 152 | 331 | 491 | 2.81e-51 | 178 |
| MS.gene037663.t1 | AT2G23760 | 56.442 | 163 | 58 | 4 | 1 | 152 | 331 | 491 | 2.81e-51 | 178 |
| MS.gene037663.t1 | AT1G75410 | 50.943 | 159 | 74 | 1 | 1 | 155 | 258 | 416 | 7.11e-51 | 176 |
| MS.gene037663.t1 | AT1G75410 | 50.943 | 159 | 74 | 1 | 1 | 155 | 258 | 416 | 7.11e-51 | 176 |
| MS.gene037663.t1 | AT1G19700 | 50.292 | 171 | 60 | 3 | 1 | 155 | 260 | 421 | 1.18e-50 | 175 |
| MS.gene037663.t1 | AT1G19700 | 50.292 | 171 | 60 | 3 | 1 | 155 | 260 | 421 | 1.18e-50 | 175 |
| MS.gene037663.t1 | AT1G19700 | 50.292 | 171 | 60 | 3 | 1 | 155 | 260 | 421 | 1.18e-50 | 175 |
| MS.gene037663.t1 | AT1G19700 | 50.292 | 171 | 60 | 3 | 1 | 155 | 260 | 421 | 1.18e-50 | 175 |
| MS.gene037663.t1 | AT1G19700 | 50.292 | 171 | 60 | 3 | 1 | 155 | 260 | 421 | 1.18e-50 | 175 |
| MS.gene037663.t1 | AT5G41410 | 55.063 | 158 | 54 | 3 | 13 | 157 | 310 | 463 | 4.31e-49 | 172 |
| MS.gene037663.t1 | AT2G35940 | 45.000 | 220 | 91 | 4 | 1 | 197 | 293 | 505 | 1.45e-48 | 172 |
| MS.gene037663.t1 | AT2G35940 | 45.000 | 220 | 91 | 4 | 1 | 197 | 293 | 505 | 1.45e-48 | 172 |
| MS.gene037663.t1 | AT2G35940 | 45.000 | 220 | 91 | 4 | 1 | 197 | 293 | 505 | 1.45e-48 | 172 |
| MS.gene037663.t1 | AT2G27220 | 51.316 | 152 | 61 | 3 | 1 | 152 | 157 | 295 | 1.66e-47 | 164 |
| MS.gene037663.t1 | AT2G27220 | 51.316 | 152 | 61 | 3 | 1 | 152 | 157 | 295 | 1.66e-47 | 164 |
| MS.gene037663.t1 | AT2G27220 | 51.316 | 152 | 61 | 3 | 1 | 152 | 175 | 313 | 2.95e-47 | 164 |
| MS.gene037663.t1 | AT1G75430 | 42.857 | 182 | 86 | 5 | 1 | 169 | 110 | 286 | 8.01e-44 | 151 |
| MS.gene037663.t1 | AT2G23760 | 42.791 | 215 | 58 | 5 | 1 | 152 | 331 | 543 | 7.54e-42 | 153 |
| MS.gene037663.t1 | AT4G36870 | 53.472 | 144 | 54 | 4 | 1 | 133 | 405 | 546 | 4.58e-38 | 141 |
| MS.gene037663.t1 | AT4G36870 | 52.817 | 142 | 54 | 4 | 1 | 131 | 405 | 544 | 1.02e-36 | 138 |
| MS.gene037663.t1 | AT1G75410 | 47.059 | 136 | 68 | 1 | 1 | 132 | 258 | 393 | 3.09e-36 | 134 |
| MS.gene037663.t1 | AT4G32980 | 63.291 | 79 | 29 | 0 | 85 | 163 | 372 | 450 | 1.00e-31 | 123 |
| MS.gene037663.t1 | AT4G32980 | 63.291 | 79 | 29 | 0 | 85 | 163 | 372 | 450 | 1.00e-31 | 123 |
| MS.gene037663.t1 | AT2G27990 | 47.748 | 111 | 53 | 2 | 1 | 111 | 345 | 450 | 2.51e-24 | 102 |
| MS.gene037663.t1 | AT1G75430 | 35.484 | 124 | 62 | 5 | 1 | 111 | 110 | 228 | 6.17e-16 | 76.6 |
| MS.gene037663.t1 | AT1G23380 | 52.727 | 55 | 26 | 0 | 92 | 146 | 255 | 309 | 2.85e-11 | 63.5 |
| MS.gene037663.t1 | AT1G23380 | 52.727 | 55 | 26 | 0 | 92 | 146 | 253 | 307 | 3.04e-11 | 63.5 |
Find 63 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATAATTACCTTCATTAT+TGG | 0.154139 | 4.3:-79356342 | None:intergenic |
| AATCGTTGAGCTGCACTTAA+AGG | 0.224777 | 4.3:-79356302 | None:intergenic |
| ACATCATTTGAGTATGTTTC+CGG | 0.258945 | 4.3:+79354819 | MS.gene037663:CDS |
| CTTCAAGCATCTAAAATGTT+TGG | 0.311343 | 4.3:-79354889 | None:intergenic |
| TGACTCCTAATTGGTATGTT+AGG | 0.316989 | 4.3:-79356089 | None:intergenic |
| TGCAGCTCCTTATGCAAGTT+TGG | 0.333083 | 4.3:+79354851 | MS.gene037663:CDS |
| TGTTGTCCTTGACTCCTAAT+TGG | 0.334463 | 4.3:-79356098 | None:intergenic |
| CCAACTACAGTTCAATAATA+AGG | 0.350401 | 4.3:+79354926 | MS.gene037663:CDS |
| TTGTGTATCAGGTGTCTAAT+TGG | 0.351909 | 4.3:+79355838 | MS.gene037663:intron |
| TTAAGTGCAGCTCAACGATT+TGG | 0.354571 | 4.3:+79356305 | MS.gene037663:CDS |
| TACCTTCATTATTGGTATCA+AGG | 0.365727 | 4.3:-79356334 | None:intergenic |
| ATCTAGGAGATTCTTCCTTC+CGG | 0.381585 | 4.3:-79354968 | None:intergenic |
| AACTTATCTGTCGATGTAGA+TGG | 0.389665 | 4.3:-79356029 | None:intergenic |
| TAAATGCACGAGTAAGGCTT+TGG | 0.399456 | 4.3:+79355865 | MS.gene037663:CDS |
| AAATTCCTAACATACCAATT+AGG | 0.407283 | 4.3:+79356084 | MS.gene037663:CDS |
| AAGGAAGAATCTCCTAGATT+TGG | 0.408203 | 4.3:+79354972 | MS.gene037663:CDS |
| TCCAAATGATTCACAACAAA+AGG | 0.413681 | 4.3:+79355932 | MS.gene037663:CDS |
| TGAGCTGCACTTAAAGGAAA+TGG | 0.423599 | 4.3:-79356296 | None:intergenic |
| GGTTCATAAATGCACGAGTA+AGG | 0.428172 | 4.3:+79355859 | MS.gene037663:CDS |
| CCTTATTATTGAACTGTAGT+TGG | 0.430289 | 4.3:-79354926 | None:intergenic |
| TATGTTAGGAATTTCATTTA+CGG | 0.436827 | 4.3:-79356075 | None:intergenic |
| CTTTCACTATTGCCAAATCT+AGG | 0.438508 | 4.3:-79354984 | None:intergenic |
| TTTATCGCCAAACTTGCATA+AGG | 0.446881 | 4.3:-79354858 | None:intergenic |
| GCAGCTCAACGATTTGGTCT+TGG | 0.449764 | 4.3:+79356311 | MS.gene037663:CDS |
| ATAATGTTGGCTAAACAAAC+TGG | 0.451025 | 4.3:+79355733 | MS.gene037663:CDS |
| CTTTATCAAAATCATGGGAT+TGG | 0.452781 | 4.3:+79356263 | MS.gene037663:CDS |
| AACTGGTCTGTCGCGTAGCC+AGG | 0.459764 | 4.3:+79355750 | MS.gene037663:CDS |
| CCTCTTTGAGGTCGCCATAC+AGG | 0.463860 | 4.3:-79355053 | None:intergenic |
| CTAGGGCTTTATCAAAATCA+TGG | 0.464795 | 4.3:+79356257 | MS.gene037663:CDS |
| ATTTACGGCGCGCTTGTAAG+TGG | 0.464965 | 4.3:-79356060 | None:intergenic |
| CGCTCGGGGAGTCCTCTTTG+AGG | 0.471673 | 4.3:-79355065 | None:intergenic |
| TAACCTGACCTATGGCTGTA+AGG | 0.479106 | 4.3:-79355014 | None:intergenic |
| CCAACACCTACATGTTGAAA+AGG | 0.482247 | 4.3:-79356152 | None:intergenic |
| TGTCGATGTAGATGGATTCT+CGG | 0.485159 | 4.3:-79356021 | None:intergenic |
| ATGTGAATTTCTTCCACCAT+TGG | 0.498530 | 4.3:-79355891 | None:intergenic |
| TTGAGCAGCAACAACCTGTA+TGG | 0.499228 | 4.3:+79355039 | MS.gene037663:CDS |
| AGAACAGTCACAGCACGCTC+GGG | 0.499463 | 4.3:-79355080 | None:intergenic |
| AACAAAAGGAAGAAAATTGT+AGG | 0.510651 | 4.3:+79355946 | MS.gene037663:CDS |
| GGAATGAATATTGTTGGTAG+TGG | 0.518167 | 4.3:+79356173 | MS.gene037663:CDS |
| GGTGTTGGAATGAATATTGT+TGG | 0.522455 | 4.3:+79356167 | MS.gene037663:CDS |
| GGCCTTGATACCAATAATGA+AGG | 0.523415 | 4.3:+79356332 | MS.gene037663:CDS |
| AGATTTGGCAATAGTGAAAG+AGG | 0.531484 | 4.3:+79354987 | MS.gene037663:CDS |
| TGATACAGATAAAATAATGT+TGG | 0.538302 | 4.3:+79355720 | MS.gene037663:CDS |
| GGACCTTACAGCCATAGGTC+AGG | 0.547661 | 4.3:+79355011 | MS.gene037663:CDS |
| TAGGGCTTTATCAAAATCAT+GGG | 0.552425 | 4.3:+79356258 | MS.gene037663:CDS |
| AAGAACAGTCACAGCACGCT+CGG | 0.552428 | 4.3:-79355081 | None:intergenic |
| AGTAATGTGTCATTGACACT+AGG | 0.552555 | 4.3:+79356239 | MS.gene037663:CDS |
| CTGTGACTGTTCTTAGAGCA+TGG | 0.561711 | 4.3:+79355090 | MS.gene037663:CDS |
| AACATACCAATTAGGAGTCA+AGG | 0.566002 | 4.3:+79356092 | MS.gene037663:CDS |
| AGGAGCTGCATTGTTGAGGC+CGG | 0.568570 | 4.3:-79354838 | None:intergenic |
| ATACTACCAACAGATGCAAT+CGG | 0.575247 | 4.3:+79354791 | None:intergenic |
| CATAAGGAGCTGCATTGTTG+AGG | 0.575307 | 4.3:-79354842 | None:intergenic |
| GATTTGGCAATAGTGAAAGA+GGG | 0.577653 | 4.3:+79354988 | MS.gene037663:CDS |
| GCTCAAGATAACCTGACCTA+TGG | 0.580908 | 4.3:-79355022 | None:intergenic |
| GAAACTAGAGAAGTATCTGA+AGG | 0.590625 | 4.3:-79355999 | None:intergenic |
| GTAATGTGTCATTGACACTA+GGG | 0.608461 | 4.3:+79356240 | MS.gene037663:CDS |
| AGTAAGGCTTTGGAAACCAA+TGG | 0.631473 | 4.3:+79355875 | MS.gene037663:CDS |
| GAACAGTCACAGCACGCTCG+GGG | 0.634057 | 4.3:-79355079 | None:intergenic |
| CCTGTATGGCGACCTCAAAG+AGG | 0.642112 | 4.3:+79355053 | MS.gene037663:CDS |
| ATTTGGCAATAGTGAAAGAG+GGG | 0.658417 | 4.3:+79354989 | MS.gene037663:CDS |
| AAATTCACATGCTAGAAACA+AGG | 0.670651 | 4.3:+79355904 | MS.gene037663:CDS |
| AAGGCTTTGGAAACCAATGG+TGG | 0.671971 | 4.3:+79355878 | MS.gene037663:CDS |
| TTTGGCAATAGTGAAAGAGG+GGG | 0.716637 | 4.3:+79354990 | MS.gene037663:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTAACAAAAAATATAATTC+AGG | - | chr4.3:79355349-79355368 | None:intergenic | 15.0% |
| !! | CTAACAAAAAATATAATTCA+GGG | - | chr4.3:79355348-79355367 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTAATACATTCA+GGG | - | chr4.3:79355319-79355338 | None:intergenic | 15.0% |
| !!! | TTTGTAATTTTAATACATTC+AGG | - | chr4.3:79355320-79355339 | None:intergenic | 15.0% |
| !! | AACATAATTACCTTCATTAT+TGG | - | chr4.3:79356345-79356364 | None:intergenic | 20.0% |
| !! | ATAGATATTGTTATATTGGT+AGG | - | chr4.3:79355817-79355836 | None:intergenic | 20.0% |
| !! | CAAATTTGATATACCAATAA+AGG | + | chr4.3:79355185-79355204 | MS.gene037663:intron | 20.0% |
| !! | CAAGATAGATATTGTTATAT+TGG | - | chr4.3:79355821-79355840 | None:intergenic | 20.0% |
| !! | TATGTTAGGAATTTCATTTA+CGG | - | chr4.3:79356078-79356097 | None:intergenic | 20.0% |
| !! | TGATACAGATAAAATAATGT+TGG | + | chr4.3:79355720-79355739 | MS.gene037663:CDS | 20.0% |
| !!! | ATTATTTTATCTGTATCAGT+AGG | - | chr4.3:79355718-79355737 | None:intergenic | 20.0% |
| ! | AAATTCCTAACATACCAATT+AGG | + | chr4.3:79356084-79356103 | MS.gene037663:CDS | 25.0% |
| ! | AACAAAAGGAAGAAAATTGT+AGG | + | chr4.3:79355946-79355965 | MS.gene037663:CDS | 25.0% |
| ! | ATAAACGAAATACACATTCT+CGG | + | chr4.3:79355449-79355468 | MS.gene037663:intron | 25.0% |
| ! | GAAATAAACGAAACATAGAA+TGG | - | chr4.3:79355146-79355165 | None:intergenic | 25.0% |
| ! | TTGGTAGGATTAAAATTCAT+TGG | - | chr4.3:79355802-79355821 | None:intergenic | 25.0% |
| !! | ATCAAAAGCTTTTACATTTC+TGG | + | chr4.3:79355654-79355673 | MS.gene037663:intron | 25.0% |
| !! | ATCCATTTTGTTCAATTTAG+TGG | - | chr4.3:79355380-79355399 | None:intergenic | 25.0% |
| !!! | ACTCGTTTTATATTTTAGTC+AGG | + | chr4.3:79355548-79355567 | MS.gene037663:intron | 25.0% |
| !!! | TTATATTTTAGTCAGGATCA+CGG | + | chr4.3:79355555-79355574 | MS.gene037663:intron | 25.0% |
| !!! | TTTTAGTTCTTGAATGTGTA+CGG | + | chr4.3:79355277-79355296 | MS.gene037663:intron | 25.0% |
| AAAATTGAAACATCTGTGCT+GGG | + | chr4.3:79355233-79355252 | MS.gene037663:intron | 30.0% | |
| AAATTCACATGCTAGAAACA+AGG | + | chr4.3:79355904-79355923 | MS.gene037663:CDS | 30.0% | |
| ACATCATTTGAGTATGTTTC+CGG | + | chr4.3:79354819-79354838 | MS.gene037663:CDS | 30.0% | |
| CAAATGTTTCATGACTTTGT+AGG | + | chr4.3:79356419-79356438 | MS.gene037663:intron | 30.0% | |
| CAATATCTATCTTGTGTATC+AGG | + | chr4.3:79355827-79355846 | MS.gene037663:intron | 30.0% | |
| CCAACTACAGTTCAATAATA+AGG | + | chr4.3:79354926-79354945 | MS.gene037663:CDS | 30.0% | |
| CCTTATTATTGAACTGTAGT+TGG | - | chr4.3:79354929-79354948 | None:intergenic | 30.0% | |
| CTACAAAGTCATGAAACATT+TGG | - | chr4.3:79356421-79356440 | None:intergenic | 30.0% | |
| CTTTATCAAAATCATGGGAT+TGG | + | chr4.3:79356263-79356282 | MS.gene037663:CDS | 30.0% | |
| GAAGGTAATTATGTTATGAG+TGG | + | chr4.3:79356350-79356369 | MS.gene037663:intron | 30.0% | |
| GTCCACTAAATTGAACAAAA+TGG | + | chr4.3:79355375-79355394 | MS.gene037663:intron | 30.0% | |
| TAAACGAAATACACATTCTC+GGG | + | chr4.3:79355450-79355469 | MS.gene037663:intron | 30.0% | |
| TACCTTCATTATTGGTATCA+AGG | - | chr4.3:79356337-79356356 | None:intergenic | 30.0% | |
| TCCAAATGATTCACAACAAA+AGG | + | chr4.3:79355932-79355951 | MS.gene037663:CDS | 30.0% | |
| TGGTATATCAAATTTGACCA+AGG | - | chr4.3:79355181-79355200 | None:intergenic | 30.0% | |
| TTGAACAAAATGGATATTCG+AGG | + | chr4.3:79355385-79355404 | MS.gene037663:intron | 30.0% | |
| ! | ACATTTTAGATGCTTGAAGA+AGG | + | chr4.3:79354893-79354912 | MS.gene037663:CDS | 30.0% |
| ! | AGCACAGATGTTTCAATTTT+CGG | - | chr4.3:79355233-79355252 | None:intergenic | 30.0% |
| ! | ATAATGTTGGCTAAACAAAC+TGG | + | chr4.3:79355733-79355752 | MS.gene037663:CDS | 30.0% |
| ! | CTTCAAGCATCTAAAATGTT+TGG | - | chr4.3:79354892-79354911 | None:intergenic | 30.0% |
| ! | GAATCACAAAATAGGCATTT+TGG | + | chr4.3:79356377-79356396 | MS.gene037663:intron | 30.0% |
| ! | TAGGGCTTTATCAAAATCAT+GGG | + | chr4.3:79356258-79356277 | MS.gene037663:CDS | 30.0% |
| !! | CATTTTGGAAGAGATGTAAT+TGG | + | chr4.3:79356392-79356411 | MS.gene037663:intron | 30.0% |
| !! | TCCTTTTGTTGTGAATCATT+TGG | - | chr4.3:79355936-79355955 | None:intergenic | 30.0% |
| !!! | GTGGTTTTGAATCACAAAAT+AGG | + | chr4.3:79356369-79356388 | MS.gene037663:intron | 30.0% |
| AAACAGCATCATGCCTTTAT+TGG | - | chr4.3:79355201-79355220 | None:intergenic | 35.0% | |
| AACATACCAATTAGGAGTCA+AGG | + | chr4.3:79356092-79356111 | MS.gene037663:CDS | 35.0% | |
| AACTTATCTGTCGATGTAGA+TGG | - | chr4.3:79356032-79356051 | None:intergenic | 35.0% | |
| AAGGAAGAATCTCCTAGATT+TGG | + | chr4.3:79354972-79354991 | MS.gene037663:CDS | 35.0% | |
| AGATTTGGCAATAGTGAAAG+AGG | + | chr4.3:79354987-79355006 | MS.gene037663:CDS | 35.0% | |
| ATGTGAATTTCTTCCACCAT+TGG | - | chr4.3:79355894-79355913 | None:intergenic | 35.0% | |
| ATTTCGATTAAGCAATGCCT+TGG | + | chr4.3:79355161-79355180 | MS.gene037663:intron | 35.0% | |
| ATTTGGCAATAGTGAAAGAG+GGG | + | chr4.3:79354989-79355008 | MS.gene037663:CDS | 35.0% | |
| CTTTCACTATTGCCAAATCT+AGG | - | chr4.3:79354987-79355006 | None:intergenic | 35.0% | |
| GAAAATTGAAACATCTGTGC+TGG | + | chr4.3:79355232-79355251 | MS.gene037663:intron | 35.0% | |
| GAAACATAGAATGGCACTTA+CGG | - | chr4.3:79355137-79355156 | None:intergenic | 35.0% | |
| GATTTGGCAATAGTGAAAGA+GGG | + | chr4.3:79354988-79355007 | MS.gene037663:CDS | 35.0% | |
| TGACTCCTAATTGGTATGTT+AGG | - | chr4.3:79356092-79356111 | None:intergenic | 35.0% | |
| TTGTGTATCAGGTGTCTAAT+TGG | + | chr4.3:79355838-79355857 | MS.gene037663:intron | 35.0% | |
| TTTATCGCCAAACTTGCATA+AGG | - | chr4.3:79354861-79354880 | None:intergenic | 35.0% | |
| TTTGGAAGAGATGTAATTGG+TGG | + | chr4.3:79356395-79356414 | MS.gene037663:intron | 35.0% | |
| ! | AGTAATGTGTCATTGACACT+AGG | + | chr4.3:79356239-79356258 | MS.gene037663:CDS | 35.0% |
| ! | AGTCTACCTTTTCAACATGT+AGG | + | chr4.3:79356146-79356165 | MS.gene037663:CDS | 35.0% |
| ! | CTAGGGCTTTATCAAAATCA+TGG | + | chr4.3:79356257-79356276 | MS.gene037663:CDS | 35.0% |
| ! | GATGTTTCAATTTTCGGCAA+TGG | - | chr4.3:79355227-79355246 | None:intergenic | 35.0% |
| ! | GGAATGAATATTGTTGGTAG+TGG | + | chr4.3:79356173-79356192 | MS.gene037663:CDS | 35.0% |
| ! | GGTGTTGGAATGAATATTGT+TGG | + | chr4.3:79356167-79356186 | MS.gene037663:CDS | 35.0% |
| ! | GTAATGTGTCATTGACACTA+GGG | + | chr4.3:79356240-79356259 | MS.gene037663:CDS | 35.0% |
| !! | GAAACTAGAGAAGTATCTGA+AGG | - | chr4.3:79356002-79356021 | None:intergenic | 35.0% |
| AATCGTTGAGCTGCACTTAA+AGG | - | chr4.3:79356305-79356324 | None:intergenic | 40.0% | |
| AATTGTAATCGCAATGACCG+TGG | + | chr4.3:79355618-79355637 | MS.gene037663:intron | 40.0% | |
| AGTTCTTGAATGTGTACGGA+GGG | + | chr4.3:79355281-79355300 | MS.gene037663:intron | 40.0% | |
| ATCTAGGAGATTCTTCCTTC+CGG | - | chr4.3:79354971-79354990 | None:intergenic | 40.0% | |
| CCAACACCTACATGTTGAAA+AGG | - | chr4.3:79356155-79356174 | None:intergenic | 40.0% | |
| GGCCTTGATACCAATAATGA+AGG | + | chr4.3:79356332-79356351 | MS.gene037663:CDS | 40.0% | |
| GGTTCATAAATGCACGAGTA+AGG | + | chr4.3:79355859-79355878 | MS.gene037663:CDS | 40.0% | |
| TAAATGCACGAGTAAGGCTT+TGG | + | chr4.3:79355865-79355884 | MS.gene037663:CDS | 40.0% | |
| TAGTTCTTGAATGTGTACGG+AGG | + | chr4.3:79355280-79355299 | MS.gene037663:intron | 40.0% | |
| TGAGCTGCACTTAAAGGAAA+TGG | - | chr4.3:79356299-79356318 | None:intergenic | 40.0% | |
| TGTTGTCCTTGACTCCTAAT+TGG | - | chr4.3:79356101-79356120 | None:intergenic | 40.0% | |
| TTAAGTGCAGCTCAACGATT+TGG | + | chr4.3:79356305-79356324 | MS.gene037663:CDS | 40.0% | |
| TTTGGCAATAGTGAAAGAGG+GGG | + | chr4.3:79354990-79355009 | MS.gene037663:CDS | 40.0% | |
| ! | CCTTTTCAACATGTAGGTGT+TGG | + | chr4.3:79356152-79356171 | MS.gene037663:CDS | 40.0% |
| ! | GTTTCAATTTTCGGCAATGG+AGG | - | chr4.3:79355224-79355243 | None:intergenic | 40.0% |
| ! | TGTCGATGTAGATGGATTCT+CGG | - | chr4.3:79356024-79356043 | None:intergenic | 40.0% |
| !! | AGTAAGGCTTTGGAAACCAA+TGG | + | chr4.3:79355875-79355894 | MS.gene037663:CDS | 40.0% |
| !!! | TGATTTTGAAGTCACCACCA+CGG | - | chr4.3:79355638-79355657 | None:intergenic | 40.0% |
| ATCAGTAGGATAGCTGCACA+GGG | - | chr4.3:79355704-79355723 | None:intergenic | 45.0% | |
| CATAAGGAGCTGCATTGTTG+AGG | - | chr4.3:79354845-79354864 | None:intergenic | 45.0% | |
| CTGTGACTGTTCTTAGAGCA+TGG | + | chr4.3:79355090-79355109 | MS.gene037663:CDS | 45.0% | |
| GACAATGCTCGACACATTCA+AGG | + | chr4.3:79355509-79355528 | MS.gene037663:intron | 45.0% | |
| GCTCAAGATAACCTGACCTA+TGG | - | chr4.3:79355025-79355044 | None:intergenic | 45.0% | |
| GTATCGAGATAACGCTTACC+TGG | - | chr4.3:79355771-79355790 | None:intergenic | 45.0% | |
| TAACCTGACCTATGGCTGTA+AGG | - | chr4.3:79355017-79355036 | None:intergenic | 45.0% | |
| TATCAGTAGGATAGCTGCAC+AGG | - | chr4.3:79355705-79355724 | None:intergenic | 45.0% | |
| TGCAGCTCCTTATGCAAGTT+TGG | + | chr4.3:79354851-79354870 | MS.gene037663:CDS | 45.0% | |
| TTGAGCAGCAACAACCTGTA+TGG | + | chr4.3:79355039-79355058 | MS.gene037663:CDS | 45.0% | |
| ! | CGCATTTTCACACAAGCAAC+CGG | + | chr4.3:79354949-79354968 | MS.gene037663:CDS | 45.0% |
| ! | TTTTCACACAAGCAACCGGA+AGG | + | chr4.3:79354953-79354972 | MS.gene037663:CDS | 45.0% |
| !! | AAGGCTTTGGAAACCAATGG+TGG | + | chr4.3:79355878-79355897 | MS.gene037663:CDS | 45.0% |
| AAGAACAGTCACAGCACGCT+CGG | - | chr4.3:79355084-79355103 | None:intergenic | 50.0% | |
| ATTTACGGCGCGCTTGTAAG+TGG | - | chr4.3:79356063-79356082 | None:intergenic | 50.0% | |
| TGTAATCGCAATGACCGTGG+TGG | + | chr4.3:79355621-79355640 | MS.gene037663:intron | 50.0% | |
| !! | GATCACGGTCGTGTTGCTTT+AGG | + | chr4.3:79355570-79355589 | MS.gene037663:intron | 50.0% |
| !! | GCAGCTCAACGATTTGGTCT+TGG | + | chr4.3:79356311-79356330 | MS.gene037663:CDS | 50.0% |
| AGAACAGTCACAGCACGCTC+GGG | - | chr4.3:79355083-79355102 | None:intergenic | 55.0% | |
| AGGAGCTGCATTGTTGAGGC+CGG | - | chr4.3:79354841-79354860 | None:intergenic | 55.0% | |
| CCTGTATGGCGACCTCAAAG+AGG | + | chr4.3:79355053-79355072 | MS.gene037663:CDS | 55.0% | |
| GGACCTTACAGCCATAGGTC+AGG | + | chr4.3:79355011-79355030 | MS.gene037663:CDS | 55.0% | |
| !! | CCTCTTTGAGGTCGCCATAC+AGG | - | chr4.3:79355056-79355075 | None:intergenic | 55.0% |
| GAACAGTCACAGCACGCTCG+GGG | - | chr4.3:79355082-79355101 | None:intergenic | 60.0% | |
| GAGGGGGACCTTACAGCCAT+AGG | + | chr4.3:79355006-79355025 | MS.gene037663:CDS | 60.0% | |
| ! | AACTGGTCTGTCGCGTAGCC+AGG | + | chr4.3:79355750-79355769 | MS.gene037663:CDS | 60.0% |
| CGCTCGGGGAGTCCTCTTTG+AGG | - | chr4.3:79355068-79355087 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 79354804 | 79356445 | 79354804 | ID=MS.gene037663 |
| chr4.3 | mRNA | 79354804 | 79356445 | 79354804 | ID=MS.gene037663.t1;Parent=MS.gene037663 |
| chr4.3 | exon | 79354804 | 79355135 | 79354804 | ID=MS.gene037663.t1.exon1;Parent=MS.gene037663.t1 |
| chr4.3 | CDS | 79354804 | 79355135 | 79354804 | ID=cds.MS.gene037663.t1;Parent=MS.gene037663.t1 |
| chr4.3 | exon | 79355711 | 79355771 | 79355711 | ID=MS.gene037663.t1.exon2;Parent=MS.gene037663.t1 |
| chr4.3 | CDS | 79355711 | 79355771 | 79355711 | ID=cds.MS.gene037663.t1;Parent=MS.gene037663.t1 |
| chr4.3 | exon | 79355849 | 79356353 | 79355849 | ID=MS.gene037663.t1.exon3;Parent=MS.gene037663.t1 |
| chr4.3 | CDS | 79355849 | 79356353 | 79355849 | ID=cds.MS.gene037663.t1;Parent=MS.gene037663.t1 |
| chr4.3 | exon | 79356441 | 79356445 | 79356441 | ID=MS.gene037663.t1.exon4;Parent=MS.gene037663.t1 |
| chr4.3 | CDS | 79356441 | 79356445 | 79356441 | ID=cds.MS.gene037663.t1;Parent=MS.gene037663.t1 |
| Gene Sequence |
| Protein sequence |
