Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037787.t1 | RHN59122.1 | 88.1 | 218 | 25 | 1 | 1 | 217 | 1 | 218 | 7.20E-101 | 376.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037787.t1 | Q9FXD6 | 39.8 | 236 | 113 | 4 | 11 | 217 | 8 | 243 | 1.2e-40 | 167.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037787.t1 | A0A072UT38 | 88.1 | 218 | 25 | 1 | 1 | 217 | 1 | 218 | 5.2e-101 | 376.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene037787.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037787.t1 | MTR_4g021760 | 88.073 | 218 | 25 | 1 | 1 | 217 | 1 | 218 | 1.22e-139 | 393 |
MS.gene037787.t1 | MTR_4g021845 | 80.645 | 217 | 42 | 0 | 1 | 217 | 1 | 217 | 1.09e-131 | 369 |
MS.gene037787.t1 | MTR_4g021855 | 76.037 | 217 | 52 | 0 | 1 | 217 | 1 | 217 | 2.78e-122 | 348 |
MS.gene037787.t1 | MTR_4g021790 | 73.733 | 217 | 57 | 0 | 1 | 217 | 1 | 217 | 6.46e-116 | 332 |
MS.gene037787.t1 | MTR_5g055260 | 58.525 | 217 | 63 | 4 | 1 | 217 | 1 | 190 | 1.07e-82 | 246 |
MS.gene037787.t1 | MTR_4g023980 | 76.642 | 137 | 32 | 0 | 55 | 191 | 35 | 171 | 2.60e-75 | 225 |
MS.gene037787.t1 | MTR_1g032570 | 43.096 | 239 | 105 | 3 | 10 | 217 | 11 | 249 | 9.66e-64 | 208 |
MS.gene037787.t1 | MTR_6g045327 | 47.534 | 223 | 109 | 4 | 1 | 217 | 1 | 221 | 3.59e-58 | 188 |
MS.gene037787.t1 | MTR_3g086100 | 38.983 | 236 | 116 | 3 | 10 | 217 | 13 | 248 | 5.85e-55 | 184 |
MS.gene037787.t1 | MTR_2g034960 | 40.517 | 232 | 114 | 2 | 10 | 217 | 29 | 260 | 3.79e-54 | 182 |
MS.gene037787.t1 | MTR_8g079940 | 38.298 | 235 | 119 | 3 | 9 | 217 | 24 | 258 | 5.61e-54 | 181 |
MS.gene037787.t1 | MTR_4g121020 | 39.316 | 234 | 116 | 2 | 10 | 217 | 31 | 264 | 7.35e-54 | 183 |
MS.gene037787.t1 | MTR_4g121020 | 39.316 | 234 | 116 | 2 | 10 | 217 | 31 | 264 | 8.49e-54 | 182 |
MS.gene037787.t1 | MTR_8g105600 | 40.789 | 228 | 115 | 2 | 10 | 217 | 9 | 236 | 5.13e-51 | 174 |
MS.gene037787.t1 | MTR_8g093040 | 44.144 | 222 | 103 | 6 | 1 | 217 | 1 | 206 | 1.09e-48 | 160 |
MS.gene037787.t1 | MTR_4g131600 | 36.207 | 232 | 125 | 4 | 9 | 217 | 19 | 250 | 4.99e-46 | 160 |
MS.gene037787.t1 | MTR_1g013170 | 37.712 | 236 | 119 | 3 | 10 | 217 | 5 | 240 | 9.98e-46 | 158 |
MS.gene037787.t1 | MTR_7g117705 | 36.017 | 236 | 123 | 4 | 10 | 217 | 5 | 240 | 7.76e-45 | 155 |
MS.gene037787.t1 | MTR_3g106220 | 37.083 | 240 | 119 | 3 | 10 | 217 | 8 | 247 | 2.69e-44 | 156 |
MS.gene037787.t1 | MTR_3g102590 | 39.048 | 210 | 101 | 4 | 10 | 217 | 8 | 192 | 2.86e-42 | 142 |
MS.gene037787.t1 | MTR_1g013180 | 36.441 | 236 | 122 | 4 | 10 | 217 | 156 | 391 | 4.46e-42 | 150 |
MS.gene037787.t1 | MTR_3g102590 | 39.048 | 210 | 101 | 4 | 10 | 217 | 8 | 192 | 6.79e-42 | 142 |
MS.gene037787.t1 | MTR_1g032570 | 40.000 | 180 | 78 | 2 | 68 | 217 | 1 | 180 | 3.10e-40 | 144 |
MS.gene037787.t1 | MTR_6g016850 | 41.772 | 158 | 90 | 1 | 4 | 159 | 3 | 160 | 4.55e-40 | 135 |
MS.gene037787.t1 | MTR_4g131570 | 33.475 | 236 | 129 | 4 | 10 | 217 | 17 | 252 | 1.20e-39 | 143 |
MS.gene037787.t1 | MTR_4g131580 | 33.047 | 233 | 131 | 4 | 10 | 217 | 17 | 249 | 1.47e-38 | 140 |
MS.gene037787.t1 | MTR_3g102600 | 34.884 | 215 | 102 | 3 | 4 | 217 | 4 | 181 | 3.86e-38 | 131 |
MS.gene037787.t1 | MTR_2g450070 | 33.061 | 245 | 127 | 3 | 10 | 217 | 18 | 262 | 6.14e-38 | 139 |
MS.gene037787.t1 | MTR_3g102600 | 34.884 | 215 | 102 | 3 | 4 | 217 | 4 | 181 | 6.68e-38 | 131 |
MS.gene037787.t1 | MTR_2g450070 | 32.653 | 245 | 128 | 4 | 10 | 217 | 18 | 262 | 1.44e-37 | 138 |
MS.gene037787.t1 | MTR_3g086100 | 37.288 | 177 | 84 | 2 | 68 | 217 | 1 | 177 | 2.83e-35 | 130 |
MS.gene037787.t1 | MTR_0450s0040 | 31.019 | 216 | 132 | 3 | 14 | 217 | 8 | 218 | 3.02e-31 | 117 |
MS.gene037787.t1 | MTR_3g102600 | 32.927 | 164 | 75 | 1 | 54 | 217 | 4 | 132 | 3.33e-29 | 106 |
MS.gene037787.t1 | MTR_3g102600 | 32.927 | 164 | 75 | 1 | 54 | 217 | 4 | 132 | 4.79e-29 | 107 |
MS.gene037787.t1 | MTR_7g026400 | 34.270 | 178 | 100 | 3 | 54 | 217 | 32 | 206 | 1.31e-28 | 112 |
MS.gene037787.t1 | MTR_4g121020 | 38.065 | 155 | 71 | 1 | 88 | 217 | 6 | 160 | 1.65e-28 | 112 |
MS.gene037787.t1 | MTR_1g013160 | 32.432 | 148 | 73 | 2 | 71 | 191 | 1 | 148 | 1.72e-17 | 76.6 |
MS.gene037787.t1 | MTR_8g032710 | 25.100 | 251 | 140 | 7 | 13 | 217 | 20 | 268 | 6.82e-17 | 79.0 |
MS.gene037787.t1 | MTR_5g041350 | 52.941 | 51 | 23 | 1 | 168 | 217 | 15 | 65 | 1.23e-11 | 63.2 |
MS.gene037787.t1 | MTR_6g032990 | 52.941 | 51 | 23 | 1 | 168 | 217 | 42 | 92 | 6.98e-11 | 61.2 |
MS.gene037787.t1 | MTR_2g090675 | 35.714 | 84 | 52 | 1 | 136 | 217 | 127 | 210 | 7.97e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037787.t1 | AT2G01760 | 38.367 | 245 | 112 | 5 | 10 | 217 | 7 | 249 | 3.48e-53 | 175 |
MS.gene037787.t1 | AT1G67710 | 39.831 | 236 | 113 | 4 | 11 | 217 | 8 | 243 | 5.58e-51 | 172 |
MS.gene037787.t1 | AT2G01760 | 34.432 | 273 | 112 | 6 | 10 | 217 | 7 | 277 | 3.09e-47 | 160 |
MS.gene037787.t1 | AT3G16857 | 37.008 | 254 | 114 | 5 | 10 | 217 | 33 | 286 | 1.33e-46 | 163 |
MS.gene037787.t1 | AT3G16857 | 37.008 | 254 | 114 | 5 | 10 | 217 | 33 | 286 | 1.45e-46 | 163 |
MS.gene037787.t1 | AT4G31920 | 37.273 | 220 | 126 | 3 | 10 | 217 | 13 | 232 | 1.16e-42 | 151 |
MS.gene037787.t1 | AT2G25180 | 35.345 | 232 | 126 | 3 | 10 | 217 | 13 | 244 | 1.26e-41 | 149 |
MS.gene037787.t1 | AT5G58080 | 36.052 | 233 | 121 | 5 | 10 | 217 | 14 | 243 | 6.44e-37 | 136 |
MS.gene037787.t1 | AT3G16857 | 35.349 | 215 | 93 | 5 | 49 | 217 | 2 | 216 | 9.50e-35 | 130 |
MS.gene037787.t1 | AT2G01760 | 36.022 | 186 | 81 | 4 | 68 | 217 | 1 | 184 | 1.36e-34 | 125 |
MS.gene037787.t1 | AT5G49240 | 30.544 | 239 | 133 | 3 | 9 | 217 | 37 | 272 | 1.59e-32 | 119 |
MS.gene037787.t1 | AT1G67710 | 38.764 | 178 | 81 | 3 | 68 | 217 | 1 | 178 | 1.86e-31 | 119 |
MS.gene037787.t1 | AT1G49190 | 28.870 | 239 | 139 | 5 | 10 | 217 | 30 | 268 | 1.06e-26 | 106 |
MS.gene037787.t1 | AT3G62670 | 28.889 | 225 | 133 | 6 | 16 | 217 | 45 | 265 | 1.98e-24 | 100 |
MS.gene037787.t1 | AT1G67710 | 37.975 | 158 | 70 | 3 | 88 | 217 | 12 | 169 | 2.22e-24 | 100 |
MS.gene037787.t1 | AT5G07210 | 27.519 | 258 | 131 | 8 | 14 | 217 | 16 | 271 | 5.83e-22 | 94.0 |
MS.gene037787.t1 | AT5G07210 | 26.692 | 266 | 131 | 9 | 14 | 217 | 16 | 279 | 1.60e-19 | 86.7 |
MS.gene037787.t1 | AT1G49190 | 32.000 | 125 | 84 | 1 | 10 | 133 | 30 | 154 | 2.04e-16 | 77.8 |
MS.gene037787.t1 | AT2G27070 | 24.521 | 261 | 138 | 9 | 14 | 217 | 16 | 274 | 7.65e-16 | 75.9 |
MS.gene037787.t1 | AT1G68210 | 24.812 | 266 | 143 | 6 | 8 | 217 | 7 | 271 | 1.79e-15 | 75.1 |
MS.gene037787.t1 | AT5G29000 | 34.959 | 123 | 65 | 4 | 103 | 217 | 166 | 281 | 1.49e-13 | 68.6 |
MS.gene037787.t1 | AT5G29000 | 34.959 | 123 | 65 | 4 | 103 | 217 | 166 | 281 | 4.17e-13 | 67.8 |
MS.gene037787.t1 | AT5G29000 | 34.959 | 123 | 65 | 4 | 103 | 217 | 123 | 238 | 4.59e-13 | 67.8 |
MS.gene037787.t1 | AT5G29000 | 34.959 | 123 | 65 | 4 | 103 | 217 | 123 | 238 | 4.59e-13 | 67.8 |
MS.gene037787.t1 | AT5G60100 | 30.081 | 123 | 80 | 3 | 14 | 131 | 64 | 185 | 1.84e-11 | 63.2 |
MS.gene037787.t1 | AT5G44190 | 49.057 | 53 | 27 | 0 | 165 | 217 | 144 | 196 | 2.18e-11 | 62.8 |
MS.gene037787.t1 | AT5G44190 | 49.057 | 53 | 27 | 0 | 165 | 217 | 144 | 196 | 2.31e-11 | 62.8 |
MS.gene037787.t1 | AT5G60100 | 30.081 | 123 | 80 | 3 | 14 | 131 | 64 | 185 | 2.74e-11 | 62.4 |
MS.gene037787.t1 | AT5G60100 | 30.081 | 123 | 80 | 3 | 14 | 131 | 64 | 185 | 2.74e-11 | 62.4 |
MS.gene037787.t1 | AT5G60100 | 30.081 | 123 | 80 | 3 | 14 | 131 | 64 | 185 | 2.74e-11 | 62.4 |
MS.gene037787.t1 | AT5G60100 | 30.081 | 123 | 80 | 3 | 14 | 131 | 64 | 185 | 3.17e-11 | 62.4 |
MS.gene037787.t1 | AT5G60100 | 30.081 | 123 | 80 | 3 | 14 | 131 | 64 | 185 | 3.17e-11 | 62.4 |
MS.gene037787.t1 | AT5G60100 | 30.081 | 123 | 80 | 3 | 14 | 131 | 64 | 185 | 3.17e-11 | 62.4 |
MS.gene037787.t1 | AT3G04030 | 52.941 | 51 | 23 | 1 | 168 | 217 | 45 | 95 | 3.93e-11 | 62.0 |
MS.gene037787.t1 | AT3G04030 | 52.941 | 51 | 23 | 1 | 168 | 217 | 45 | 95 | 4.29e-11 | 62.0 |
MS.gene037787.t1 | AT5G24470 | 27.692 | 130 | 83 | 4 | 10 | 131 | 45 | 171 | 7.03e-11 | 61.6 |
Find 41 sgRNAs with CRISPR-Local
Find 62 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACATGTTGCCAGCCATTTAC+AGG | 0.283862 | 4.3:-76830111 | MS.gene037787:intron |
GTGTAATCGATGCAATTATA+AGG | 0.312923 | 4.3:-76830933 | MS.gene037787:CDS |
ACATCTCCTCGACGAAATTA+AGG | 0.321564 | 4.3:+76830954 | None:intergenic |
GCAAGAACCTTGAGACCTTC+TGG | 0.331776 | 4.3:+76830998 | None:intergenic |
TGAGTTGTAGGGTAACATTT+TGG | 0.373812 | 4.3:+76830693 | None:intergenic |
AATGTGGGGCTTGCGAATAT+TGG | 0.385194 | 4.3:-76830517 | MS.gene037787:CDS |
CGAATATTGGACTAAGCCTT+TGG | 0.392176 | 4.3:-76830504 | MS.gene037787:CDS |
ATCAGAAGCCATGCTACATT+TGG | 0.418312 | 4.3:+76830802 | None:intergenic |
CAAAGAAGGCCCGTTTGTCT+TGG | 0.418636 | 4.3:-76830334 | MS.gene037787:CDS |
GTTTCAAGAAAATAGAAAAC+GGG | 0.418887 | 4.3:-76830393 | MS.gene037787:CDS |
CTTTCTTTCCAACATGTTGA+AGG | 0.419409 | 4.3:+76830778 | None:intergenic |
TGGCAACATGTTATAAGAAA+AGG | 0.422808 | 4.3:-76830458 | MS.gene037787:CDS |
AAAAGAAACACTTGCAAAGA+AGG | 0.435703 | 4.3:-76830348 | MS.gene037787:CDS |
TTGAGACCTTCTGGTAATGA+TGG | 0.440402 | 4.3:+76831007 | None:intergenic |
ATATGAAATTGTTGGAAGCT+TGG | 0.446291 | 4.3:-76830417 | MS.gene037787:CDS |
ATGATGGTTTGTCGGTGAAA+AGG | 0.455733 | 4.3:+76831023 | None:intergenic |
TGATGGTTTGTCGGTGAAAA+GGG | 0.459152 | 4.3:+76831024 | None:intergenic |
CTTCAACATGTTGGAAAGAA+AGG | 0.459586 | 4.3:-76830777 | MS.gene037787:CDS |
AATAAATTCTTACTAATGAC+AGG | 0.461511 | 4.3:+76830665 | None:intergenic |
TTCTCGCGACCAAGACAAAC+GGG | 0.470376 | 4.3:+76830325 | None:intergenic |
TGTAATCGATGCAATTATAA+GGG | 0.476930 | 4.3:-76830932 | MS.gene037787:intron |
TTCTGGTAATGATGGTTTGT+CGG | 0.483493 | 4.3:+76831015 | None:intergenic |
AAGTCGTAAACATCCATGTT+TGG | 0.494866 | 4.3:+76830719 | None:intergenic |
TGTTTCAAGAAAATAGAAAA+CGG | 0.510078 | 4.3:-76830394 | MS.gene037787:CDS |
AGGAAAGAATCATACTATCA+AGG | 0.510494 | 4.3:+76830264 | None:intergenic |
ATTATGAAGTCTATTGAATG+TGG | 0.513075 | 4.3:-76830533 | MS.gene037787:CDS |
TTCTGATGCCTTCAACATGT+TGG | 0.527887 | 4.3:-76830786 | MS.gene037787:CDS |
TTATGAAGTCTATTGAATGT+GGG | 0.532174 | 4.3:-76830532 | MS.gene037787:CDS |
AAAACGAACCTGTAAATGGC+TGG | 0.538065 | 4.3:+76830103 | None:intergenic |
TTCAGTTACCAAATGTAGCA+TGG | 0.538628 | 4.3:-76830810 | MS.gene037787:intron |
ATTCTCGCGACCAAGACAAA+CGG | 0.543227 | 4.3:+76830324 | None:intergenic |
CTACGTGCAGTCAATCAACT+AGG | 0.547867 | 4.3:-76830287 | MS.gene037787:CDS |
AGAACTTTCTGCGGAATCAA+CGG | 0.562052 | 4.3:+76830556 | None:intergenic |
ATCATTACCAGAAGGTCTCA+AGG | 0.588259 | 4.3:-76831005 | MS.gene037787:CDS |
TCTTATAACATGTTGCCACA+TGG | 0.594344 | 4.3:+76830463 | None:intergenic |
CTTCATAATAGAACTTTCTG+CGG | 0.598305 | 4.3:+76830547 | None:intergenic |
TATGAAGTCTATTGAATGTG+GGG | 0.598969 | 4.3:-76830531 | MS.gene037787:CDS |
TGATGCTCATATGCCAAACA+TGG | 0.604750 | 4.3:-76830732 | MS.gene037787:CDS |
CACTCTCCTTAATTTCGTCG+AGG | 0.625060 | 4.3:-76830960 | MS.gene037787:CDS |
GACAAACCATCATTACCAGA+AGG | 0.670951 | 4.3:-76831013 | MS.gene037787:CDS |
TTTCAAGAAAATAGAAAACG+GGG | 0.722642 | 4.3:-76830392 | MS.gene037787:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACAAAAAATATGAAATTGT+TGG | - | chr4.3:76830635-76830654 | MS.gene037787:intron | 15.0% |
!!! | TTATTTCTTTTTTGTAGTTA+TGG | - | chr4.3:76830481-76830500 | MS.gene037787:CDS | 15.0% |
!! | AAAGATGAAAACTTTGAATA+AGG | + | chr4.3:76830171-76830190 | None:intergenic | 20.0% |
!! | AATAAATTCTTACTAATGAC+AGG | + | chr4.3:76830398-76830417 | None:intergenic | 20.0% |
!! | AGCATAGTAAAAAAGTAATT+AGG | + | chr4.3:76830819-76830838 | None:intergenic | 20.0% |
!! | TGAAAAATAAGAGAAAAACA+TGG | + | chr4.3:76830873-76830892 | None:intergenic | 20.0% |
!! | TGTTTCAAGAAAATAGAAAA+CGG | - | chr4.3:76830666-76830685 | MS.gene037787:intron | 20.0% |
!!! | AAAAAAGATTCTGAAAATCA+TGG | - | chr4.3:76830904-76830923 | MS.gene037787:intron | 20.0% |
!!! | AACATGTTCTTTTTTCATAT+CGG | + | chr4.3:76830936-76830955 | None:intergenic | 20.0% |
!!! | ATGATTTTCAGAATCTTTTT+TGG | + | chr4.3:76830905-76830924 | None:intergenic | 20.0% |
!!! | ATGTTTTTCTCTTATTTTTC+AGG | - | chr4.3:76830872-76830891 | MS.gene037787:intron | 20.0% |
!!! | TGTTTTTCTCTTATTTTTCA+GGG | - | chr4.3:76830873-76830892 | MS.gene037787:intron | 20.0% |
!!! | TTCAAAGTTTTCATCTTTTT+TGG | - | chr4.3:76830173-76830192 | MS.gene037787:intron | 20.0% |
! | ATTATGAAGTCTATTGAATG+TGG | - | chr4.3:76830527-76830546 | MS.gene037787:CDS | 25.0% |
! | GTTTCAAGAAAATAGAAAAC+GGG | - | chr4.3:76830667-76830686 | MS.gene037787:intron | 25.0% |
! | TGTAATCGATGCAATTATAA+GGG | - | chr4.3:76830128-76830147 | MS.gene037787:CDS | 25.0% |
! | TTATGAAGTCTATTGAATGT+GGG | - | chr4.3:76830528-76830547 | MS.gene037787:CDS | 25.0% |
! | TTTCAAGAAAATAGAAAACG+GGG | - | chr4.3:76830668-76830687 | MS.gene037787:intron | 25.0% |
!!! | ACATGTTCTTTTTTCATATC+GGG | + | chr4.3:76830935-76830954 | None:intergenic | 25.0% |
!!! | GTTTTTCTCTTATTTTTCAG+GGG | - | chr4.3:76830874-76830893 | MS.gene037787:intron | 25.0% |
AAAAGAAACACTTGCAAAGA+AGG | - | chr4.3:76830712-76830731 | MS.gene037787:CDS | 30.0% | |
AGGAAAGAATCATACTATCA+AGG | + | chr4.3:76830799-76830818 | None:intergenic | 30.0% | |
ATATGAAATTGTTGGAAGCT+TGG | - | chr4.3:76830643-76830662 | MS.gene037787:intron | 30.0% | |
CTTCATAATAGAACTTTCTG+CGG | + | chr4.3:76830516-76830535 | None:intergenic | 30.0% | |
GTGTAATCGATGCAATTATA+AGG | - | chr4.3:76830127-76830146 | MS.gene037787:CDS | 30.0% | |
TATGAAGTCTATTGAATGTG+GGG | - | chr4.3:76830529-76830548 | MS.gene037787:CDS | 30.0% | |
TGGCAACATGTTATAAGAAA+AGG | - | chr4.3:76830602-76830621 | MS.gene037787:intron | 30.0% | |
!! | TTGAACTGTTTTTCAACCAA+AGG | + | chr4.3:76830575-76830594 | None:intergenic | 30.0% |
AAAAACAGTTCAAGACCATG+TGG | - | chr4.3:76830582-76830601 | MS.gene037787:intron | 35.0% | |
AAGTCGTAAACATCCATGTT+TGG | + | chr4.3:76830344-76830363 | None:intergenic | 35.0% | |
CTTCAACATGTTGGAAAGAA+AGG | - | chr4.3:76830283-76830302 | MS.gene037787:CDS | 35.0% | |
CTTTCTTTCCAACATGTTGA+AGG | + | chr4.3:76830285-76830304 | None:intergenic | 35.0% | |
TCTTATAACATGTTGCCACA+TGG | + | chr4.3:76830600-76830619 | None:intergenic | 35.0% | |
TGCAAAAACGAACCTGTAAA+TGG | + | chr4.3:76830964-76830983 | None:intergenic | 35.0% | |
TTCAGTTACCAAATGTAGCA+TGG | - | chr4.3:76830250-76830269 | MS.gene037787:intron | 35.0% | |
! | CTTTGCAAGTGTTTCTTTTG+AGG | + | chr4.3:76830711-76830730 | None:intergenic | 35.0% |
! | TGAGTTGTAGGGTAACATTT+TGG | + | chr4.3:76830370-76830389 | None:intergenic | 35.0% |
! | TTCTGGTAATGATGGTTTGT+CGG | + | chr4.3:76830048-76830067 | None:intergenic | 35.0% |
!!! | GACAGGAATTTTGAGTTGTA+GGG | + | chr4.3:76830381-76830400 | None:intergenic | 35.0% |
!!! | TGACAGGAATTTTGAGTTGT+AGG | + | chr4.3:76830382-76830401 | None:intergenic | 35.0% |
AAAACGAACCTGTAAATGGC+TGG | + | chr4.3:76830960-76830979 | None:intergenic | 40.0% | |
AAACCTAGGCAACTAGACTT+AGG | + | chr4.3:76831023-76831042 | None:intergenic | 40.0% | |
ACATCTCCTCGACGAAATTA+AGG | + | chr4.3:76830109-76830128 | None:intergenic | 40.0% | |
AGAACTTTCTGCGGAATCAA+CGG | + | chr4.3:76830507-76830526 | None:intergenic | 40.0% | |
ATCAGAAGCCATGCTACATT+TGG | + | chr4.3:76830261-76830280 | None:intergenic | 40.0% | |
ATCATTACCAGAAGGTCTCA+AGG | - | chr4.3:76830055-76830074 | MS.gene037787:intron | 40.0% | |
CGAATATTGGACTAAGCCTT+TGG | - | chr4.3:76830556-76830575 | MS.gene037787:CDS | 40.0% | |
GACAAACCATCATTACCAGA+AGG | - | chr4.3:76830047-76830066 | MS.gene037787:intron | 40.0% | |
TGATGCTCATATGCCAAACA+TGG | - | chr4.3:76830328-76830347 | MS.gene037787:CDS | 40.0% | |
TTCTGATGCCTTCAACATGT+TGG | - | chr4.3:76830274-76830293 | MS.gene037787:intron | 40.0% | |
! | ATGATGGTTTGTCGGTGAAA+AGG | + | chr4.3:76830040-76830059 | None:intergenic | 40.0% |
! | TGATGGTTTGTCGGTGAAAA+GGG | + | chr4.3:76830039-76830058 | None:intergenic | 40.0% |
! | TTGAGACCTTCTGGTAATGA+TGG | + | chr4.3:76830056-76830075 | None:intergenic | 40.0% |
AATGTGGGGCTTGCGAATAT+TGG | - | chr4.3:76830543-76830562 | MS.gene037787:CDS | 45.0% | |
ACATGTTGCCAGCCATTTAC+AGG | - | chr4.3:76830949-76830968 | MS.gene037787:CDS | 45.0% | |
ATTCTCGCGACCAAGACAAA+CGG | + | chr4.3:76830739-76830758 | None:intergenic | 45.0% | |
CACTCTCCTTAATTTCGTCG+AGG | - | chr4.3:76830100-76830119 | MS.gene037787:intron | 45.0% | |
CTACGTGCAGTCAATCAACT+AGG | - | chr4.3:76830773-76830792 | MS.gene037787:CDS | 45.0% | |
GTACCTAAGTCTAGTTGCCT+AGG | - | chr4.3:76831017-76831036 | MS.gene037787:CDS | 45.0% | |
CAAAGAAGGCCCGTTTGTCT+TGG | - | chr4.3:76830726-76830745 | MS.gene037787:CDS | 50.0% | |
GCAAGAACCTTGAGACCTTC+TGG | + | chr4.3:76830065-76830084 | None:intergenic | 50.0% | |
TTCTCGCGACCAAGACAAAC+GGG | + | chr4.3:76830738-76830757 | None:intergenic | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4.3 | gene | 76830032 | 76831050 | 76830032 | ID=MS.gene037787 |
chr4.3 | mRNA | 76830032 | 76831050 | 76830032 | ID=MS.gene037787.t1;Parent=MS.gene037787 |
chr4.3 | exon | 76830933 | 76831050 | 76830933 | ID=MS.gene037787.t1.exon1;Parent=MS.gene037787.t1 |
chr4.3 | CDS | 76830933 | 76831050 | 76830933 | ID=cds.MS.gene037787.t1;Parent=MS.gene037787.t1 |
chr4.3 | exon | 76830678 | 76830827 | 76830678 | ID=MS.gene037787.t1.exon2;Parent=MS.gene037787.t1 |
chr4.3 | CDS | 76830678 | 76830827 | 76830678 | ID=cds.MS.gene037787.t1;Parent=MS.gene037787.t1 |
chr4.3 | exon | 76830279 | 76830584 | 76830279 | ID=MS.gene037787.t1.exon3;Parent=MS.gene037787.t1 |
chr4.3 | CDS | 76830279 | 76830584 | 76830279 | ID=cds.MS.gene037787.t1;Parent=MS.gene037787.t1 |
chr4.3 | exon | 76830112 | 76830188 | 76830112 | ID=MS.gene037787.t1.exon4;Parent=MS.gene037787.t1 |
chr4.3 | CDS | 76830112 | 76830188 | 76830112 | ID=cds.MS.gene037787.t1;Parent=MS.gene037787.t1 |
chr4.3 | exon | 76830032 | 76830034 | 76830032 | ID=MS.gene037787.t1.exon5;Parent=MS.gene037787.t1 |
chr4.3 | CDS | 76830032 | 76830034 | 76830032 | ID=cds.MS.gene037787.t1;Parent=MS.gene037787.t1 |
Gene Sequence |
Protein sequence |