AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037910.t1 MTR_3g080590 89.032 155 17 0 1 155 1 155 1.13e-84 256
MS.gene037910.t1 MTR_7g446520 47.934 242 111 2 98 339 81 307 4.41e-68 219
MS.gene037910.t1 MTR_7g446480 56.000 175 77 0 179 353 140 314 2.94e-61 201
MS.gene037910.t1 MTR_7g446510 54.749 179 81 0 179 357 155 333 1.72e-58 194
MS.gene037910.t1 MTR_1g070355 35.294 238 149 3 105 339 74 309 9.97e-40 149
MS.gene037910.t1 MTR_6g051425 32.800 250 157 5 112 353 24 270 3.10e-34 130
MS.gene037910.t1 MTR_5g076070 28.175 252 164 4 85 333 45 282 5.46e-32 123
MS.gene037910.t1 MTR_7g028855 43.709 151 82 1 98 245 113 263 7.03e-32 126
MS.gene037910.t1 MTR_4g035820 33.603 247 153 6 111 349 81 324 2.78e-30 123
MS.gene037910.t1 MTR_3g450850 30.769 247 158 5 111 345 53 298 6.48e-25 105
MS.gene037910.t1 MTR_0558s0020 26.374 273 179 5 93 344 24 295 6.49e-22 95.5
MS.gene037910.t1 MTR_6g022080 27.439 164 116 1 104 264 84 247 1.41e-18 85.1
MS.gene037910.t1 MTR_8g035530 46.753 77 39 1 92 168 1 75 7.51e-17 75.1
MS.gene037910.t1 MTR_8g446020 27.586 203 134 3 154 344 54 255 5.63e-16 77.8
MS.gene037910.t1 MTR_6g090505 27.358 212 133 5 151 344 22 230 1.65e-14 74.7
MS.gene037910.t1 MTR_0402s0040 30.460 174 116 5 108 278 29 200 5.99e-14 73.9
MS.gene037910.t1 MTR_1g008290 30.952 126 82 2 172 297 20 140 2.19e-13 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037910.t1 AT4G38180 32.424 330 210 8 33 355 3 326 5.46e-36 140
MS.gene037910.t1 AT5G28530 33.716 261 157 5 111 356 61 320 4.30e-33 132
MS.gene037910.t1 AT5G28530 33.716 261 157 5 111 356 61 320 5.03e-33 131
MS.gene037910.t1 AT5G28530 33.716 261 157 5 111 356 61 320 5.03e-33 131
MS.gene037910.t1 AT1G10240 33.077 260 156 8 111 359 54 306 5.81e-29 119
MS.gene037910.t1 AT1G10240 33.077 260 156 8 111 359 54 306 5.81e-29 119
MS.gene037910.t1 AT4G15090 30.000 300 187 8 109 402 55 337 1.33e-26 113
MS.gene037910.t1 AT4G15090 30.000 300 187 8 109 402 55 337 1.33e-26 113
MS.gene037910.t1 AT4G15090 30.000 300 187 8 109 402 55 337 1.33e-26 113
MS.gene037910.t1 AT4G15090 30.000 300 187 8 109 402 55 337 1.33e-26 113
MS.gene037910.t1 AT4G15090 30.000 300 187 8 109 402 55 337 1.33e-26 113
MS.gene037910.t1 AT3G06250 28.664 307 161 9 109 411 194 446 4.39e-22 99.4
MS.gene037910.t1 AT3G06250 28.664 307 161 9 109 411 194 446 4.39e-22 99.4
MS.gene037910.t1 AT3G06250 28.664 307 161 9 109 411 194 446 4.39e-22 99.4
MS.gene037910.t1 AT4G19990 29.392 296 148 10 83 355 6 263 5.49e-21 95.9
MS.gene037910.t1 AT4G19990 29.885 261 131 8 110 355 26 249 1.05e-20 95.1
MS.gene037910.t1 AT4G19990 29.885 261 131 8 110 355 26 249 1.05e-20 95.1
MS.gene037910.t1 AT4G19990 29.885 261 131 8 110 355 26 249 1.20e-20 95.1
MS.gene037910.t1 AT4G19990 29.885 261 131 8 110 355 26 249 1.29e-20 94.7
MS.gene037910.t1 AT4G19990 29.885 261 131 8 110 355 26 249 1.29e-20 94.7
MS.gene037910.t1 AT1G52520 29.528 254 158 6 109 357 89 326 6.09e-20 92.8
MS.gene037910.t1 AT5G28530 33.333 177 112 4 111 282 61 236 2.49e-19 90.9
MS.gene037910.t1 AT5G28530 33.333 177 112 4 111 282 61 236 2.76e-19 90.5
MS.gene037910.t1 AT1G76320 28.405 257 152 7 109 353 1 237 5.13e-19 89.7
MS.gene037910.t1 AT1G76320 28.405 257 152 7 109 353 1 237 5.61e-19 89.7
MS.gene037910.t1 AT1G76320 28.405 257 152 7 109 353 1 237 5.61e-19 89.7
MS.gene037910.t1 AT1G76320 28.405 257 152 7 109 353 1 237 5.86e-19 89.7
MS.gene037910.t1 AT3G22170 24.528 265 161 5 104 353 69 309 1.61e-18 88.6
MS.gene037910.t1 AT3G22170 24.528 265 161 5 104 353 69 309 1.61e-18 88.6
MS.gene037910.t1 AT1G80010 29.352 293 165 13 84 356 79 349 2.57e-18 87.8
MS.gene037910.t1 AT2G27110 25.296 253 153 5 109 356 53 274 4.42e-18 87.0
MS.gene037910.t1 AT2G27110 25.296 253 153 5 109 356 53 274 4.42e-18 87.0
MS.gene037910.t1 AT5G18960 28.745 247 137 7 109 353 215 424 5.98e-18 86.7
MS.gene037910.t1 AT5G18960 28.745 247 137 7 109 353 215 424 5.98e-18 86.7
MS.gene037910.t1 AT4G19990 45.783 83 45 0 273 355 110 192 8.22e-18 86.3
MS.gene037910.t1 AT2G27110 40.506 79 47 0 278 356 51 129 4.82e-13 71.6
MS.gene037910.t1 AT2G32250 26.515 264 131 8 101 353 33 244 3.67e-12 68.9
MS.gene037910.t1 AT2G32250 26.515 264 131 8 101 353 33 244 3.67e-12 68.9
MS.gene037910.t1 AT2G32250 26.515 264 131 8 101 353 33 244 3.74e-12 68.6
MS.gene037910.t1 AT2G32250 26.515 264 131 8 101 353 33 244 4.05e-12 68.6
MS.gene037910.t1 AT2G32250 26.515 264 131 8 101 353 33 244 4.05e-12 68.6
MS.gene037910.t1 AT2G32250 26.515 264 131 8 101 353 33 244 4.05e-12 68.6
MS.gene037910.t1 AT2G32250 26.667 255 125 7 109 353 1 203 4.63e-12 68.6
MS.gene037910.t1 AT2G32250 26.667 255 125 7 109 353 1 203 4.75e-12 68.6
MS.gene037910.t1 AT4G38170 55.319 47 20 1 310 355 45 91 5.44e-11 64.7

Find 93 sgRNAs with CRISPR-Local

Find 148 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCTACTTTGAGTTACTTCC+AGG 0.237219 1.1:+31454832 MS.gene037910:CDS
TCACTCAATTTGCGGTAATT+AGG 0.258248 1.1:-31454635 None:intergenic
TTCATCAGCAATAGGGCTTT+TGG 0.277004 1.1:-31455950 None:intergenic
TCCATACTTGTTCTTTCTAT+AGG 0.305560 1.1:-31454993 None:intergenic
GAAGATTCTTCATCAGCAAT+AGG 0.315268 1.1:-31455958 None:intergenic
AGGACTTGGGTTTATCAAAA+AGG 0.326599 1.1:+31454751 MS.gene037910:CDS
TGATAAACCCAAGTCCTTCA+TGG 0.346028 1.1:-31454745 None:intergenic
AGATGATGATATAAGGGATA+TGG 0.347376 1.1:+31454298 MS.gene037910:CDS
ACCTATAGAAAGAACAAGTA+TGG 0.349144 1.1:+31454992 MS.gene037910:CDS
ACGACTTTGTTCGTACGATT+TGG 0.356788 1.1:+31454546 MS.gene037910:CDS
TATTGCTGATGGCGGCTCGC+TGG 0.361638 1.1:+31456001 MS.gene037910:CDS
ATGTGACAGATGATGATATA+AGG 0.367162 1.1:+31454291 MS.gene037910:CDS
GAGTTTACATTTACAGATGA+TGG 0.367609 1.1:+31454887 MS.gene037910:CDS
AGGTTTGACTATGAGTGTTT+TGG 0.377109 1.1:+31454947 MS.gene037910:CDS
TGTAAGAACATGTCATATCT+TGG 0.384991 1.1:+31454697 MS.gene037910:CDS
TGGGTATAACACGACACTTT+TGG 0.385145 1.1:-31456024 None:intergenic
ATATAATTTCACGGATCATC+AGG 0.409639 1.1:+31454778 MS.gene037910:CDS
TTTGGGCAGATTCTACTAGT+AGG 0.409763 1.1:+31454927 MS.gene037910:CDS
TGCGGTAATTAGGCATCAAA+TGG 0.435720 1.1:-31454625 None:intergenic
AATAGCGTGCTATAGGAGTA+TGG 0.437326 1.1:-31456064 None:intergenic
CGCAGAACAATTAGTTCGAA+TGG 0.445789 1.1:-31454507 None:intergenic
TATCAACTTCACTCAATTTG+CGG 0.446828 1.1:-31454643 None:intergenic
AAGGGTGGCCATGAAGGACT+TGG 0.449428 1.1:+31454737 MS.gene037910:CDS
AAGATTCTTCATCAGCAATA+GGG 0.456407 1.1:-31455957 None:intergenic
GCAAGGGTTAAAATAAAAGA+TGG 0.464290 1.1:+31454800 MS.gene037910:CDS
ATACTTGTTCTTTCTATAGG+TGG 0.464692 1.1:-31454990 None:intergenic
GTAAGAACATGTCATATCTT+GGG 0.467321 1.1:+31454698 MS.gene037910:CDS
GCGTCAATTAGTATGCAATA+AGG 0.467578 1.1:+31454433 MS.gene037910:CDS
AACGCAAAGGAGCTAATTCA+TGG 0.469712 1.1:-31454598 None:intergenic
TTCGAATGGTTAGCGTAGAT+CGG 0.471186 1.1:-31454493 None:intergenic
CCCCTTTACCCCTATGGCAA+GGG 0.471821 1.1:-31455063 None:intergenic
TTTGAGTTACTTCCAGGGTA+AGG 0.478060 1.1:+31454838 MS.gene037910:CDS
CAAGGGAAAGAGAACTTTGA+TGG 0.478759 1.1:+31454251 MS.gene037910:CDS
GGCAAGGGGTTGTTTCTCCA+TGG 0.482176 1.1:-31455048 None:intergenic
ATGTGAAACGTGATTCTAAT+GGG 0.492055 1.1:+31454399 MS.gene037910:CDS
AAAGGACTTATATAATTTCA+CGG 0.493961 1.1:+31454769 MS.gene037910:CDS
ATATAACCCCTTTACCCCTA+TGG 0.505461 1.1:-31455069 None:intergenic
AGGACCGAGTCCAAGATGAT+AGG 0.507972 1.1:+31455916 MS.gene037910:CDS
GTATCACTATATACATCAAA+AGG 0.509968 1.1:-31454020 None:intergenic
CAAGGGTTAAAATAAAAGAT+GGG 0.510385 1.1:+31454801 MS.gene037910:CDS
GGTCAAAAGGGTGGCCATGA+AGG 0.510809 1.1:+31454731 MS.gene037910:CDS
CCACGGGTTTGAAGTAAGAA+AGG 0.512169 1.1:+31454373 MS.gene037910:CDS
GATGTGAAACGTGATTCTAA+TGG 0.514927 1.1:+31454398 MS.gene037910:CDS
AGCAACGATGTTCGTACTGA+TGG 0.519052 1.1:+31454179 MS.gene037910:CDS
GTTTGCTAAGCTCAGCAAGA+AGG 0.522272 1.1:+31455896 MS.gene037910:intron
GAGAAACAACCCCTTGCCAT+AGG 0.525206 1.1:+31455053 MS.gene037910:CDS
TTGCAAGCCGCCTATCATCT+TGG 0.527236 1.1:-31455926 None:intergenic
AGAAACAACCCCTTGCCATA+GGG 0.527759 1.1:+31455054 MS.gene037910:CDS
GCCGCCTATCATCTTGGACT+CGG 0.531147 1.1:-31455920 None:intergenic
AATAAGGAGGGTGTTAATGA+TGG 0.543414 1.1:+31454449 MS.gene037910:CDS
AGCTAATTCATGGTTGTGAG+AGG 0.545517 1.1:-31454588 None:intergenic
TGGTAGCGACTAGCAGTGGT+TGG 0.553705 1.1:-31456044 None:intergenic
AAGGGGTTGTTTCTCCATGG+TGG 0.566504 1.1:-31455045 None:intergenic
ACCCCTTTACCCCTATGGCA+AGG 0.568144 1.1:-31455064 None:intergenic
CGAGCCGCCATCAGCAATAG+CGG 0.571864 1.1:-31455997 None:intergenic
TATTGTTTGCAAAATACCAC+GGG 0.576217 1.1:+31454357 MS.gene037910:CDS
GTGGAATTTAACCATGGTAA+TGG 0.576772 1.1:+31454215 MS.gene037910:CDS
CCCTTTACCCCTATGGCAAG+GGG 0.579715 1.1:-31455062 None:intergenic
TGTGACAGATGATGATATAA+GGG 0.581249 1.1:+31454292 MS.gene037910:CDS
GCTAATTCATGGTTGTGAGA+GGG 0.581523 1.1:-31454587 None:intergenic
TATCAGTATCAGCCTTACCC+TGG 0.582368 1.1:-31454850 None:intergenic
TCAATTAGTATGCAATAAGG+AGG 0.584633 1.1:+31454436 MS.gene037910:CDS
AGGGTGGCCATGAAGGACTT+GGG 0.586883 1.1:+31454738 MS.gene037910:CDS
CTATTGTTTGCAAAATACCA+CGG 0.588377 1.1:+31454356 MS.gene037910:CDS
GGTAGCGACTAGCAGTGGTT+GGG 0.589687 1.1:-31456043 None:intergenic
ATTTCACGGATCATCAGGCA+AGG 0.592596 1.1:+31454783 MS.gene037910:CDS
ATATAGTGATACAGATGAGG+TGG 0.607738 1.1:+31454031 MS.gene037910:CDS
GCTACTTTGAGTTACTTCCA+GGG 0.608783 1.1:+31454833 MS.gene037910:CDS
GACACTGATAGTGATACAGA+TGG 0.614810 1.1:+31454077 MS.gene037910:CDS
GTTGATAAACAAGTTGCTAG+TGG 0.617676 1.1:+31454659 MS.gene037910:CDS
TGATAGTGATACAGATGGGG+TGG 0.618742 1.1:+31454082 MS.gene037910:CDS
AAGGGTTAAAATAAAAGATG+GGG 0.619179 1.1:+31454802 MS.gene037910:CDS
GAAACAACCCCTTGCCATAG+GGG 0.626017 1.1:+31455055 MS.gene037910:CDS
TGTGCAACCGCTATTGCTGA+TGG 0.635045 1.1:+31455990 MS.gene037910:CDS
TTTCACGGATCATCAGGCAA+GGG 0.637022 1.1:+31454784 MS.gene037910:CDS
TTTAGTGGATATAACCACCA+TGG 0.638528 1.1:+31455031 MS.gene037910:CDS
CCTTTCTTACTTCAAACCCG+TGG 0.639832 1.1:-31454373 None:intergenic
CATTGCAAACACCATTACCA+TGG 0.642035 1.1:-31454226 None:intergenic
AATGGTGTTTGCAATGAGCA+AGG 0.648235 1.1:+31454233 MS.gene037910:CDS
GCTAGTGGTCTACATTCGCA+AGG 0.649023 1.1:+31454674 MS.gene037910:CDS
ATCAAATGGACAAAACGCAA+AGG 0.651947 1.1:-31454611 None:intergenic
ACCGAGTCCAAGATGATAGG+CGG 0.653379 1.1:+31455919 MS.gene037910:CDS
ATGGTGTTTGCAATGAGCAA+GGG 0.657603 1.1:+31454234 MS.gene037910:CDS
TGATGGAGATGCAGACGGTG+TGG 0.660310 1.1:+31454196 MS.gene037910:CDS
ACACTGATAGTGATACAGAT+GGG 0.663559 1.1:+31454078 MS.gene037910:CDS
AGTATGGTAGCGACTAGCAG+TGG 0.667677 1.1:-31456048 None:intergenic
CAATTAGTATGCAATAAGGA+GGG 0.675920 1.1:+31454437 MS.gene037910:CDS
GACGGTGTGGAATTTAACCA+TGG 0.688761 1.1:+31454209 MS.gene037910:CDS
TGTATATAGTGATACAGATG+AGG 0.703043 1.1:+31454028 MS.gene037910:CDS
GCAACCGCTATTGCTGATGG+CGG 0.710760 1.1:+31455993 MS.gene037910:CDS
CGTACTGATGGAGATGCAGA+CGG 0.711480 1.1:+31454191 MS.gene037910:CDS
CACTGATAGTGATACAGATG+GGG 0.724418 1.1:+31454079 MS.gene037910:CDS
GGATATGGAATTCAACACAG+AGG 0.763384 1.1:+31454313 MS.gene037910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATGTTTTTTTTTTTGAAT+CGG - chr1.1:31455213-31455232 None:intergenic 10.0%
!!! CAATTTTATTTATGTTTTTA+GGG - chr1.1:31455423-31455442 None:intergenic 10.0%
!!! TCAATTTTATTTATGTTTTT+AGG - chr1.1:31455424-31455443 None:intergenic 10.0%
!! AAAGGACTTATATAATTTCA+CGG + chr1.1:31454769-31454788 MS.gene037910:CDS 20.0%
!! GAGTTTAAATCATATTAAAG+TGG - chr1.1:31455871-31455890 None:intergenic 20.0%
!!! ATTTTATTAAAACGAGTTCA+AGG + chr1.1:31455542-31455561 MS.gene037910:intron 20.0%
!!! CATAAATTTTATACAAGATC+AGG + chr1.1:31455275-31455294 MS.gene037910:intron 20.0%
!!! TTTTATTAAAACGAGTTCAA+GGG + chr1.1:31455543-31455562 MS.gene037910:intron 20.0%
! AAGGGTTAAAATAAAAGATG+GGG + chr1.1:31454802-31454821 MS.gene037910:CDS 25.0%
! ATATCCACTAAAAATGACAA+GGG - chr1.1:31455023-31455042 None:intergenic 25.0%
! CAAGGGTTAAAATAAAAGAT+GGG + chr1.1:31454801-31454820 MS.gene037910:CDS 25.0%
! GACATATGAGTATACTTAAA+TGG + chr1.1:31455297-31455316 MS.gene037910:intron 25.0%
! GATGGAAAAAATAAGAAGAA+TGG + chr1.1:31454467-31454486 MS.gene037910:CDS 25.0%
! GTATCACTATATACATCAAA+AGG - chr1.1:31454023-31454042 None:intergenic 25.0%
! TATATCCACTAAAAATGACA+AGG - chr1.1:31455024-31455043 None:intergenic 25.0%
! TCATGTAATTTCATCGTAAT+AGG - chr1.1:31455579-31455598 None:intergenic 25.0%
! TTTATTAAAACGAGTTCAAG+GGG + chr1.1:31455544-31455563 MS.gene037910:intron 25.0%
!! ATATAGCATGATTTTACAGA+AGG + chr1.1:31455640-31455659 MS.gene037910:intron 25.0%
!! CTTTTGTATTTATCTCTTTG+TGG + chr1.1:31455142-31455161 MS.gene037910:intron 25.0%
AAGATTCTTCATCAGCAATA+GGG - chr1.1:31455960-31455979 None:intergenic 30.0%
ACCTATAGAAAGAACAAGTA+TGG + chr1.1:31454992-31455011 MS.gene037910:CDS 30.0%
ACTTAATTGAAGCTACTCTT+TGG - chr1.1:31455498-31455517 None:intergenic 30.0%
AGATGATGATATAAGGGATA+TGG + chr1.1:31454298-31454317 MS.gene037910:CDS 30.0%
ATACTTGTTCTTTCTATAGG+TGG - chr1.1:31454993-31455012 None:intergenic 30.0%
ATATAATTTCACGGATCATC+AGG + chr1.1:31454778-31454797 MS.gene037910:CDS 30.0%
ATGTGAAACGTGATTCTAAT+GGG + chr1.1:31454399-31454418 MS.gene037910:CDS 30.0%
ATGTGACAGATGATGATATA+AGG + chr1.1:31454291-31454310 MS.gene037910:CDS 30.0%
CAAAATTTATTAAGCCAAGG+AGG - chr1.1:31455190-31455209 None:intergenic 30.0%
CAATTAGTATGCAATAAGGA+GGG + chr1.1:31454437-31454456 MS.gene037910:CDS 30.0%
CTATTGTTTGCAAAATACCA+CGG + chr1.1:31454356-31454375 MS.gene037910:CDS 30.0%
GAGTTTACATTTACAGATGA+TGG + chr1.1:31454887-31454906 MS.gene037910:CDS 30.0%
GCAAGGGTTAAAATAAAAGA+TGG + chr1.1:31454800-31454819 MS.gene037910:CDS 30.0%
GTAAGAACATGTCATATCTT+GGG + chr1.1:31454698-31454717 MS.gene037910:CDS 30.0%
TATCAACTTCACTCAATTTG+CGG - chr1.1:31454646-31454665 None:intergenic 30.0%
TATCCACTAAAAATGACAAG+GGG - chr1.1:31455022-31455041 None:intergenic 30.0%
TATTGTTTGCAAAATACCAC+GGG + chr1.1:31454357-31454376 MS.gene037910:CDS 30.0%
TCAATTAGTATGCAATAAGG+AGG + chr1.1:31454436-31454455 MS.gene037910:CDS 30.0%
TCCATACTTGTTCTTTCTAT+AGG - chr1.1:31454996-31455015 None:intergenic 30.0%
TGTAAGAACATGTCATATCT+TGG + chr1.1:31454697-31454716 MS.gene037910:CDS 30.0%
TGTATATAGTGATACAGATG+AGG + chr1.1:31454028-31454047 MS.gene037910:CDS 30.0%
TGTGACAGATGATGATATAA+GGG + chr1.1:31454292-31454311 MS.gene037910:CDS 30.0%
! ATGTGGTTGATTCATGTAAT+TGG - chr1.1:31455697-31455716 None:intergenic 30.0%
!!! ACGCCTAGAAAACATTTTTT+GGG + chr1.1:31454910-31454929 MS.gene037910:CDS 30.0%
!!! GGGTTATATATGGAGTTTTT+TGG + chr1.1:31455083-31455102 MS.gene037910:intron 30.0%
AAAAAAAAGTCCCCCGAATT+CGG + chr1.1:31455668-31455687 MS.gene037910:intron 35.0%
AGGACTTGGGTTTATCAAAA+AGG + chr1.1:31454751-31454770 MS.gene037910:CDS 35.0%
ATATAGTGATACAGATGAGG+TGG + chr1.1:31454031-31454050 MS.gene037910:CDS 35.0%
ATATATGCAGAACACCTCAA+TGG - chr1.1:31455116-31455135 None:intergenic 35.0%
ATCAAATGGACAAAACGCAA+AGG - chr1.1:31454614-31454633 None:intergenic 35.0%
ATGTAATTGGTTGCCGAATT+CGG - chr1.1:31455684-31455703 None:intergenic 35.0%
ATTTATCTCTTTGTGGTCCA+AGG + chr1.1:31455149-31455168 MS.gene037910:intron 35.0%
CGGCAAAATTTATTAAGCCA+AGG - chr1.1:31455193-31455212 None:intergenic 35.0%
GAAGATTCTTCATCAGCAAT+AGG - chr1.1:31455961-31455980 None:intergenic 35.0%
GATGTGAAACGTGATTCTAA+TGG + chr1.1:31454398-31454417 MS.gene037910:CDS 35.0%
GCGTCAATTAGTATGCAATA+AGG + chr1.1:31454433-31454452 MS.gene037910:CDS 35.0%
GTGGAATTTAACCATGGTAA+TGG + chr1.1:31454215-31454234 MS.gene037910:CDS 35.0%
TATAGAAGACGAAATCTGCA+AGG - chr1.1:31455241-31455260 None:intergenic 35.0%
TCACTCAATTTGCGGTAATT+AGG - chr1.1:31454638-31454657 None:intergenic 35.0%
TTACATGAATCAACCACATC+AGG + chr1.1:31455698-31455717 MS.gene037910:intron 35.0%
! ACACTGATAGTGATACAGAT+GGG + chr1.1:31454078-31454097 MS.gene037910:CDS 35.0%
! AGGTTTGACTATGAGTGTTT+TGG + chr1.1:31454947-31454966 MS.gene037910:CDS 35.0%
! CATATCTTGGGCTTTTTGAT+GGG + chr1.1:31454710-31454729 MS.gene037910:CDS 35.0%
! CTGCCCAAAAAATGTTTTCT+AGG - chr1.1:31454916-31454935 None:intergenic 35.0%
! GTTGATAAACAAGTTGCTAG+TGG + chr1.1:31454659-31454678 MS.gene037910:CDS 35.0%
! TCATATCTTGGGCTTTTTGA+TGG + chr1.1:31454709-31454728 MS.gene037910:CDS 35.0%
! TTTAGTGGATATAACCACCA+TGG + chr1.1:31455031-31455050 MS.gene037910:CDS 35.0%
!! AATAAGGAGGGTGTTAATGA+TGG + chr1.1:31454449-31454468 MS.gene037910:CDS 35.0%
!! TTGCTGTAGAGTAACTTGTT+TGG - chr1.1:31455759-31455778 None:intergenic 35.0%
!!! AAACCCCTTGTCATTTTTAG+TGG + chr1.1:31455016-31455035 MS.gene037910:CDS 35.0%
!!! GACGCCTAGAAAACATTTTT+TGG + chr1.1:31454909-31454928 MS.gene037910:CDS 35.0%
AACGCAAAGGAGCTAATTCA+TGG - chr1.1:31454601-31454620 None:intergenic 40.0%
AATGGTGTTTGCAATGAGCA+AGG + chr1.1:31454233-31454252 MS.gene037910:CDS 40.0%
ACGACTTTGTTCGTACGATT+TGG + chr1.1:31454546-31454565 MS.gene037910:CDS 40.0%
AGCTAATTCATGGTTGTGAG+AGG - chr1.1:31454591-31454610 None:intergenic 40.0%
AGGGGTAAAGGGGTTATATA+TGG + chr1.1:31455073-31455092 MS.gene037910:intron 40.0%
ATATAACCCCTTTACCCCTA+TGG - chr1.1:31455072-31455091 None:intergenic 40.0%
ATGGTGTTTGCAATGAGCAA+GGG + chr1.1:31454234-31454253 MS.gene037910:CDS 40.0%
CAAGGGAAAGAGAACTTTGA+TGG + chr1.1:31454251-31454270 MS.gene037910:CDS 40.0%
CATTGCAAACACCATTACCA+TGG - chr1.1:31454229-31454248 None:intergenic 40.0%
CGCAGAACAATTAGTTCGAA+TGG - chr1.1:31454510-31454529 None:intergenic 40.0%
GCTAATTCATGGTTGTGAGA+GGG - chr1.1:31454590-31454609 None:intergenic 40.0%
GGATATGGAATTCAACACAG+AGG + chr1.1:31454313-31454332 MS.gene037910:CDS 40.0%
TGATAAACCCAAGTCCTTCA+TGG - chr1.1:31454748-31454767 None:intergenic 40.0%
TGCGGTAATTAGGCATCAAA+TGG - chr1.1:31454628-31454647 None:intergenic 40.0%
TGTAATTGGTTGCCGAATTC+GGG - chr1.1:31455683-31455702 None:intergenic 40.0%
TTCGAATGGTTAGCGTAGAT+CGG - chr1.1:31454496-31454515 None:intergenic 40.0%
TTTGGGCAGATTCTACTAGT+AGG + chr1.1:31454927-31454946 MS.gene037910:CDS 40.0%
! CACTGATAGTGATACAGATG+GGG + chr1.1:31454079-31454098 MS.gene037910:CDS 40.0%
! GACACTGATAGTGATACAGA+TGG + chr1.1:31454077-31454096 MS.gene037910:CDS 40.0%
! GCTACTTTGAGTTACTTCCA+GGG + chr1.1:31454833-31454852 MS.gene037910:CDS 40.0%
! TGGGTATAACACGACACTTT+TGG - chr1.1:31456027-31456046 None:intergenic 40.0%
! TTCATCAGCAATAGGGCTTT+TGG - chr1.1:31455953-31455972 None:intergenic 40.0%
! TTTGAGTTACTTCCAGGGTA+AGG + chr1.1:31454838-31454857 MS.gene037910:CDS 40.0%
!! GGCTTTTTGATGGGTCAAAA+GGG + chr1.1:31454719-31454738 MS.gene037910:CDS 40.0%
!! TGCTACTTTGAGTTACTTCC+AGG + chr1.1:31454832-31454851 MS.gene037910:CDS 40.0%
!! TTTTTGATGGGTCAAAAGGG+TGG + chr1.1:31454722-31454741 MS.gene037910:CDS 40.0%
AGAAACAACCCCTTGCCATA+GGG + chr1.1:31455054-31455073 MS.gene037910:CDS 45.0%
AGAAGACGAAATCTGCAAGG+AGG - chr1.1:31455238-31455257 None:intergenic 45.0%
AGCAACGATGTTCGTACTGA+TGG + chr1.1:31454179-31454198 MS.gene037910:CDS 45.0%
ATGCAGAACACCTCAATGGT+GGG - chr1.1:31455112-31455131 None:intergenic 45.0%
ATTTCACGGATCATCAGGCA+AGG + chr1.1:31454783-31454802 MS.gene037910:CDS 45.0%
CCTTTCTTACTTCAAACCCG+TGG - chr1.1:31454376-31454395 None:intergenic 45.0%
CTCTTTGTGGTCCAAGGTTT+GGG + chr1.1:31455155-31455174 MS.gene037910:intron 45.0%
GACGGTGTGGAATTTAACCA+TGG + chr1.1:31454209-31454228 MS.gene037910:CDS 45.0%
GGTGAAAGAAACCCAAACCT+TGG - chr1.1:31455169-31455188 None:intergenic 45.0%
GTAATTGGTTGCCGAATTCG+GGG - chr1.1:31455682-31455701 None:intergenic 45.0%
TAATTGGTTGCCGAATTCGG+GGG - chr1.1:31455681-31455700 None:intergenic 45.0%
TATCAGTATCAGCCTTACCC+TGG - chr1.1:31454853-31454872 None:intergenic 45.0%
TATGCAGAACACCTCAATGG+TGG - chr1.1:31455113-31455132 None:intergenic 45.0%
TCTCTTTGTGGTCCAAGGTT+TGG + chr1.1:31455154-31455173 MS.gene037910:intron 45.0%
TTGGGTTTCTTTCACCTCCT+TGG + chr1.1:31455173-31455192 MS.gene037910:intron 45.0%
TTTCACGGATCATCAGGCAA+GGG + chr1.1:31454784-31454803 MS.gene037910:CDS 45.0%
! CCACGGGTTTGAAGTAAGAA+AGG + chr1.1:31454373-31454392 MS.gene037910:CDS 45.0%
! GTTTGCTAAGCTCAGCAAGA+AGG + chr1.1:31455896-31455915 MS.gene037910:intron 45.0%
! TGATAGTGATACAGATGGGG+TGG + chr1.1:31454082-31454101 MS.gene037910:CDS 45.0%
!! GGGCTTTTTGATGGGTCAAA+AGG + chr1.1:31454718-31454737 MS.gene037910:CDS 45.0%
ACCGAGTCCAAGATGATAGG+CGG + chr1.1:31455919-31455938 MS.gene037910:CDS 50.0%
AGGACCGAGTCCAAGATGAT+AGG + chr1.1:31455916-31455935 MS.gene037910:CDS 50.0%
GAAACAACCCCTTGCCATAG+GGG + chr1.1:31455055-31455074 MS.gene037910:CDS 50.0%
GAATCAACCACATCAGGCCT+CGG + chr1.1:31455704-31455723 MS.gene037910:intron 50.0%
GAGAAACAACCCCTTGCCAT+AGG + chr1.1:31455053-31455072 MS.gene037910:CDS 50.0%
GCTAGTGGTCTACATTCGCA+AGG + chr1.1:31454674-31454693 MS.gene037910:CDS 50.0%
TGTGCAACCGCTATTGCTGA+TGG + chr1.1:31455990-31456009 MS.gene037910:CDS 50.0%
TTGCAAGCCGCCTATCATCT+TGG - chr1.1:31455929-31455948 None:intergenic 50.0%
! AGTATGGTAGCGACTAGCAG+TGG - chr1.1:31456051-31456070 None:intergenic 50.0%
! CGTACTGATGGAGATGCAGA+CGG + chr1.1:31454191-31454210 MS.gene037910:CDS 50.0%
!! AAGGGGTTGTTTCTCCATGG+TGG - chr1.1:31455048-31455067 None:intergenic 50.0%
!! TTTTTGGCGTCCCACCATTG+AGG + chr1.1:31455099-31455118 MS.gene037910:intron 50.0%
AAGGGTGGCCATGAAGGACT+TGG + chr1.1:31454737-31454756 MS.gene037910:CDS 55.0%
ACCCCTTGCCATAGGGGTAA+AGG + chr1.1:31455061-31455080 MS.gene037910:intron 55.0%
ACCCCTTTACCCCTATGGCA+AGG - chr1.1:31455067-31455086 None:intergenic 55.0%
AGGGTGGCCATGAAGGACTT+GGG + chr1.1:31454738-31454757 MS.gene037910:CDS 55.0%
CCCCTTGCCATAGGGGTAAA+GGG + chr1.1:31455062-31455081 MS.gene037910:intron 55.0%
CCCCTTTACCCCTATGGCAA+GGG - chr1.1:31455066-31455085 None:intergenic 55.0%
CCCTTGCCATAGGGGTAAAG+GGG + chr1.1:31455063-31455082 MS.gene037910:intron 55.0%
CCCTTTACCCCTATGGCAAG+GGG - chr1.1:31455065-31455084 None:intergenic 55.0%
GCAACCGCTATTGCTGATGG+CGG + chr1.1:31455993-31456012 MS.gene037910:CDS 55.0%
GCCGCCTATCATCTTGGACT+CGG - chr1.1:31455923-31455942 None:intergenic 55.0%
GGTAGCGACTAGCAGTGGTT+GGG - chr1.1:31456046-31456065 None:intergenic 55.0%
GGTCAAAAGGGTGGCCATGA+AGG + chr1.1:31454731-31454750 MS.gene037910:CDS 55.0%
TGATAGTCCGAGGCCTGATG+TGG - chr1.1:31455714-31455733 None:intergenic 55.0%
TGATGGAGATGCAGACGGTG+TGG + chr1.1:31454196-31454215 MS.gene037910:CDS 55.0%
! TGGTAGCGACTAGCAGTGGT+TGG - chr1.1:31456047-31456066 None:intergenic 55.0%
!! GGCAAGGGGTTGTTTCTCCA+TGG - chr1.1:31455051-31455070 None:intergenic 55.0%
CGAGCCGCCATCAGCAATAG+CGG - chr1.1:31456000-31456019 None:intergenic 60.0%
GCCTCGGACTATCAGAGTGC+AGG + chr1.1:31455720-31455739 MS.gene037910:intron 60.0%
GCCTGCACTCTGATAGTCCG+AGG - chr1.1:31455724-31455743 None:intergenic 60.0%
!! TATTGCTGATGGCGGCTCGC+TGG + chr1.1:31456001-31456020 MS.gene037910:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 31453993 31456077 31453993 ID=MS.gene037910
chr1.1 mRNA 31453993 31456077 31453993 ID=MS.gene037910.t1;Parent=MS.gene037910
chr1.1 exon 31453993 31455076 31453993 ID=MS.gene037910.t1.exon1;Parent=MS.gene037910.t1
chr1.1 CDS 31453993 31455076 31453993 ID=cds.MS.gene037910.t1;Parent=MS.gene037910.t1
chr1.1 exon 31455911 31456077 31455911 ID=MS.gene037910.t1.exon2;Parent=MS.gene037910.t1
chr1.1 CDS 31455911 31456077 31455911 ID=cds.MS.gene037910.t1;Parent=MS.gene037910.t1
Gene Sequence

>MS.gene037910

ATGTCTACATATAGTGAAGCAACATTGCCTTTTGATGTATATAGTGATACAGATGAGGTGGAATTTAATAGTGTTAATGATATTGACACTGATAGTGATACAGATGGGGTGGAATTTAATAGTGTTAATGATGTTGACACTGATAGTGACACTGATAGTGATACTGAAGATATAAAAGTCAATAGCAGCAACGATGTTCGTACTGATGGAGATGCAGACGGTGTGGAATTTAACCATGGTAATGGTGTTTGCAATGAGCAAGGGAAAGAGAACTTTGATGGCTACAAATGCATCAGTGATGTGACAGATGATGATATAAGGGATATGGAATTCAACACAGAGGATGAAGCTATAAAGTTTTATCTATTGTTTGCAAAATACCACGGGTTTGAAGTAAGAAAGGATGATGTGAAACGTGATTCTAATGGGAACATTATTATGCGTCAATTAGTATGCAATAAGGAGGGTGTTAATGATGGAAAAAATAAGAAGAATGGCAGCCGATCTACGCTAACCATTCGAACTAATTGTTCTGCGAAACTTCGAGTAGTCTACGACTTTGTTCGTACGATTTGGAGAGTTTCTGTTTTCAAACCCTCTCACAACCATGAATTAGCTCCTTTGCGTTTTGTCCATTTGATGCCTAATTACCGCAAATTGAGTGAAGTTGATAAACAAGTTGCTAGTGGTCTACATTCGCAAGGTGTAAGAACATGTCATATCTTGGGCTTTTTGATGGGTCAAAAGGGTGGCCATGAAGGACTTGGGTTTATCAAAAAGGACTTATATAATTTCACGGATCATCAGGCAAGGGTTAAAATAAAAGATGGGGATACTTTTGCTACTTTGAGTTACTTCCAGGGTAAGGCTGATACTGATACATCATTCTTTTCAGAGTTTACATTTACAGATGATGGACGCCTAGAAAACATTTTTTGGGCAGATTCTACTAGTAGGTTTGACTATGAGTGTTTTGGCGATGTTGTTGCATTTGACACCACCTATAGAAAGAACAAGTATGGAAAACCCCTTGTCATTTTTAGTGGATATAACCACCATGGAGAAACAACCCCTTGCCATAGGGGTAAAGGGGTTATATATGGAGTTTTTTGGCGTCCCACCATTGAGGTGTTCTGCATATATACGACACTTTTGTATTTATCTCTTTGTGGTCCAAGGTTTGGGTTTCTTTCACCTCCTTGGCTTAATAAATTTTGCCGATTCAAAAAAAAAAACATATATCCTCCTTGCAGATTTCGTCTTCTATAATGTAACACGTTTTCATAAATTTTATACAAGATCAGGACATATGAGTATACTTAAATGGCTTAACTCTTACTCGTTTATATTTTAAATTAATTTGATCAAAATTTTCTCAATATTTTACACTAGTGTAATGCATTTATCTTCTTTTACAATAAGAAGAACCCTAAAAACATAAATAAAATTGATCAAAGTTCATAGCTATCTACAACATAAGAATAAGTACAACAGATGCAATTCCAAAGAGTAGCTTCAATTAAGTACAATTTTTTTTTTTATGAGCAAGATTTTATTAAAACGAGTTCAAGGGGTACTCGAAACCTATTACGATGAAATTACATGAATCAACATACATTGTTGAAAAAACACAAGCTGTACATCAACATATAGCATGATTTTACAGAAGGAAAAAAAAAAAAAGTCCCCCGAATTCGGCAACCAATTACATGAATCAACCACATCAGGCCTCGGACTATCAGAGTGCAGGCTCTAATACAAGTCCAAACAAGTTACTCTACAGCAACACAAGTAACTCTAATTGACATCTGACTTCTTCAAGTTCAAATAATTATCTGCAGCAGTAAAAATGAAATGCTCTATACATGAACAAAACCACTTTAATATGATTTAAACTCGATTTGTTTGCTAAGCTCAGCAAGAAGGACCGAGTCCAAGATGATAGGCGGCTTGCAAGCCAAAAGCCCTATTGCTGATGAAGAATCTTCAACACATGTTGTGCAACCGCTATTGCTGATGGCGGCTCGCTGGCCAAAAGTGTCGTGTTATACCCAACCACTGCTAGTCGCTACCATACTCCTATAG
Protein sequence

>MS.gene037910.t1

MSTYSEATLPFDVYSDTDEVEFNSVNDIDTDSDTDGVEFNSVNDVDTDSDTDSDTEDIKVNSSNDVRTDGDADGVEFNHGNGVCNEQGKENFDGYKCISDVTDDDIRDMEFNTEDEAIKFYLLFAKYHGFEVRKDDVKRDSNGNIIMRQLVCNKEGVNDGKNKKNGSRSTLTIRTNCSAKLRVVYDFVRTIWRVSVFKPSHNHELAPLRFVHLMPNYRKLSEVDKQVASGLHSQGVRTCHILGFLMGQKGGHEGLGFIKKDLYNFTDHQARVKIKDGDTFATLSYFQGKADTDTSFFSEFTFTDDGRLENIFWADSTSRFDYECFGDVVAFDTTYRKNKYGKPLVIFSGYNHHGETTPCHRARRTESKMIGGLQAKSPIADEESSTHVVQPLLLMAARWPKVSCYTQPLLVATILL