AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037944

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037944.t1 MTR_3g116200 70.283 212 34 5 1 206 1 189 2.55e-87 261
MS.gene037944.t1 MTR_3g116200 70.283 212 34 5 1 206 1 189 1.07e-86 261
MS.gene037944.t1 MTR_5g024920 36.735 196 81 5 31 203 247 422 9.43e-26 105
MS.gene037944.t1 MTR_5g024920 36.735 196 81 5 31 203 322 497 1.44e-25 104
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037944.t1 AT1G76510 47.518 141 50 5 68 205 137 256 3.23e-27 108
MS.gene037944.t1 AT1G76510 47.518 141 50 5 68 205 137 256 3.23e-27 108
MS.gene037944.t1 AT1G76510 47.518 141 50 5 68 205 137 256 3.23e-27 108
MS.gene037944.t1 AT1G20910 47.143 140 52 3 68 205 101 220 1.34e-26 106
MS.gene037944.t1 AT1G20910 47.143 140 52 3 68 205 101 220 1.49e-26 105
MS.gene037944.t1 AT2G17410 41.304 138 63 3 68 205 489 608 2.74e-24 100
MS.gene037944.t1 AT2G17410 41.304 138 63 3 68 205 489 608 2.74e-24 100
MS.gene037944.t1 AT2G17410 41.304 138 63 3 68 205 489 608 2.89e-24 100
MS.gene037944.t1 AT1G76510 42.683 164 47 7 68 205 137 279 3.85e-24 100

Find 49 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTGTAACGTTCTTAACTTT+AGG 0.348861 1.1:+32476322 None:intergenic
ACGTTCTTAACTTTAGGTTT+TGG 0.366210 1.1:+32476328 None:intergenic
GAAAAGCACAAGAGAGAGAT+TGG 0.369872 1.1:-32475017 MS.gene037944:CDS
AAAAGCACAAGAGAGAGATT+GGG 0.399171 1.1:-32475016 MS.gene037944:CDS
ACCAATGGGGCCCCTTCCGC+AGG 0.405392 1.1:+32473952 None:intergenic
ATAAATTCTTCTTGCTCCAT+AGG 0.411533 1.1:+32476153 None:intergenic
TCAAATGGAGGGTCATGAAA+TGG 0.420923 1.1:-32476458 None:intergenic
TTCAAGGATGCCTGCGGAAG+GGG 0.428270 1.1:-32473962 MS.gene037944:CDS
ACATAACGGGTATGACCAAT+GGG 0.436986 1.1:+32473938 None:intergenic
GCCTGCGGAAGGGGCCCCAT+TGG 0.443897 1.1:-32473953 MS.gene037944:CDS
CACTCTAATAAACAATTTGA+AGG 0.445459 1.1:+32476027 None:intergenic
TATTGCTATGACCACGTTCA+AGG 0.447452 1.1:-32473978 MS.gene037944:CDS
AACAATAATAATAACAATGC+TGG 0.458891 1.1:-32476292 MS.gene037944:CDS
CCATCTAGCGTGATAAGACT+TGG 0.462533 1.1:-32475572 MS.gene037944:intron
TGATGAAGCCGGTACGCCTA+TGG 0.464693 1.1:-32476169 MS.gene037944:CDS
AATGGGACTTGATAAAACTT+AGG 0.466755 1.1:+32476081 None:intergenic
TTCTTGCTCCATAGGCGTAC+CGG 0.468437 1.1:+32476161 None:intergenic
CATATTTGAGGCAATTCAAT+GGG 0.472805 1.1:+32476064 None:intergenic
ACATATTTGAGGCAATTCAA+TGG 0.476768 1.1:+32476063 None:intergenic
TTTCTACAGATCGAGGTCCT+TGG 0.482284 1.1:-32476115 MS.gene037944:CDS
GTGTCATCAGCAGCAGCATC+AGG 0.497864 1.1:+32476394 None:intergenic
TCAAGGCATTGGTACATAAC+GGG 0.501407 1.1:+32473925 None:intergenic
TTCAAGGCATTGGTACATAA+CGG 0.513824 1.1:+32473924 None:intergenic
GGTTGATGAATTGATCCGAC+AGG 0.521927 1.1:+32474981 None:intergenic
TACATAACGGGTATGACCAA+TGG 0.536905 1.1:+32473937 None:intergenic
CGTTCAAGGATGCCTGCGGA+AGG 0.537021 1.1:-32473964 MS.gene037944:CDS
GGTTGCTGTTGTTCAAGTTG+AGG 0.543387 1.1:+32476349 None:intergenic
CTTAGGAGGCTTAAATTCCA+AGG 0.563988 1.1:+32476098 None:intergenic
GGGACTTGATAAAACTTAGG+AGG 0.566132 1.1:+32476084 None:intergenic
TTGTTCAAGTTGAGGAGTGA+GGG 0.579458 1.1:+32476357 None:intergenic
AGTCACACTTGAAATAGTAC+AGG 0.579775 1.1:+32475139 None:intergenic
GTTCAAGGATGCCTGCGGAA+GGG 0.581545 1.1:-32473963 MS.gene037944:CDS
TATAATCTGATACATATTTG+AGG 0.586707 1.1:+32476052 None:intergenic
TGGAGAGCTGTTATCAGACT+AGG 0.587815 1.1:-32475716 MS.gene037944:CDS
AATTCATCAACCTTCGAGTG+TGG 0.593876 1.1:-32474970 MS.gene037944:CDS
ACTCTAATAAACAATTTGAA+GGG 0.597755 1.1:+32476028 None:intergenic
ATGGCTGTTTATGATGAAGC+CGG 0.603393 1.1:-32476180 MS.gene037944:CDS
TAATAATAACAATGCTGGCG+AGG 0.604281 1.1:-32476287 MS.gene037944:intron
AAAGCACAAGAGAGAGATTG+GGG 0.611914 1.1:-32475015 MS.gene037944:CDS
TTACTCAGAAATCAAATGGA+GGG 0.625887 1.1:-32476469 None:intergenic
GTTGTTCAAGTTGAGGAGTG+AGG 0.632158 1.1:+32476356 None:intergenic
CAGACTAGGTGGCTATGAAG+TGG 0.636788 1.1:-32475702 MS.gene037944:intron
TCCGCAGGCATCCTTGAACG+TGG 0.640216 1.1:+32473967 None:intergenic
GGGGAGCTACAGCTCCCTGT+CGG 0.647127 1.1:-32474996 MS.gene037944:CDS
TCGAGCATTTCTACAGATCG+AGG 0.659811 1.1:-32476122 MS.gene037944:CDS
GTTGATGAATTGATCCGACA+GGG 0.679129 1.1:+32474982 None:intergenic
ACCACGTTCAAGGATGCCTG+CGG 0.689783 1.1:-32473968 MS.gene037944:CDS
AGAGCTGTTATCAGACTAGG+TGG 0.717567 1.1:-32475713 MS.gene037944:CDS
CATAACGGGTATGACCAATG+GGG 0.823153 1.1:+32473939 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTATTAATAAAATGAAAA+TGG + chr1.1:32474950-32474969 None:intergenic 10.0%
!! TAAATAAGATAAGAATATGA+TGG - chr1.1:32475517-32475536 MS.gene037944:intron 15.0%
!! TTAAAATGTATTCAAAACAA+TGG + chr1.1:32474160-32474179 None:intergenic 15.0%
!!! TCATATTCTTATCTTATTTA+TGG + chr1.1:32475517-32475536 None:intergenic 15.0%
!! AACAATAATAATAACAATGC+TGG - chr1.1:32474087-32474106 MS.gene037944:intron 20.0%
!! ACAAATGGATATGAAATTTA+TGG + chr1.1:32475487-32475506 None:intergenic 20.0%
!! ACTCTAATAAACAATTTGAA+GGG + chr1.1:32474354-32474373 None:intergenic 20.0%
!! ATTTATGGATGAAAAACAAA+TGG + chr1.1:32475502-32475521 None:intergenic 20.0%
!! CGATGTATTATATCAATATT+CGG + chr1.1:32476365-32476384 None:intergenic 20.0%
!! TATAATCTGATACATATTTG+AGG + chr1.1:32474330-32474349 None:intergenic 20.0%
!!! ATTAAGTTCTCTTATGTTTT+TGG - chr1.1:32474924-32474943 MS.gene037944:intron 20.0%
!!! ATTGACTATTTGTTGAAATA+TGG - chr1.1:32476064-32476083 MS.gene037944:CDS 20.0%
!!! TAAATTCGTTTTTTGTTGAA+AGG + chr1.1:32475922-32475941 None:intergenic 20.0%
!!! TATATATTTTTTAAGCGCTT+CGG + chr1.1:32476278-32476297 None:intergenic 20.0%
!!! TCATTATATTCTAGTTTGTT+TGG - chr1.1:32474854-32474873 MS.gene037944:intron 20.0%
! AAATGTTACCTTCTCATAAT+CGG + chr1.1:32475013-32475032 None:intergenic 25.0%
! ACTTTCAATTTAAGTGAATG+CGG - chr1.1:32475774-32475793 MS.gene037944:intron 25.0%
! ATTAAAATGGACACTTGAAA+GGG + chr1.1:32475556-32475575 None:intergenic 25.0%
! ATTATAGTAGCTATCAAGTT+GGG - chr1.1:32476106-32476125 MS.gene037944:CDS 25.0%
! CACTCTAATAAACAATTTGA+AGG + chr1.1:32474355-32474374 None:intergenic 25.0%
! CATGTAATAACTGAAAATCT+TGG + chr1.1:32475211-32475230 None:intergenic 25.0%
! CATTTAGTGCTATATGTTTA+GGG - chr1.1:32474895-32474914 MS.gene037944:intron 25.0%
! TATTAAAATGGACACTTGAA+AGG + chr1.1:32475557-32475576 None:intergenic 25.0%
! TCATTTAGTGCTATATGTTT+AGG - chr1.1:32474894-32474913 MS.gene037944:intron 25.0%
!! AATCTTGGTTTCATTTTCAT+TGG + chr1.1:32475196-32475215 None:intergenic 25.0%
!! GAAAACTTGATTCCAATTTT+TGG + chr1.1:32475828-32475847 None:intergenic 25.0%
!!! AAGATTGCTTATTTTCTCAT+CGG - chr1.1:32474630-32474649 MS.gene037944:intron 25.0%
!!! TCAGTTATTTCTTTTTGAAC+AGG + chr1.1:32474981-32475000 None:intergenic 25.0%
!!! TTCAAGTGTCCATTTTAATA+AGG - chr1.1:32475557-32475576 MS.gene037944:CDS 25.0%
AATGGGACTTGATAAAACTT+AGG + chr1.1:32474301-32474320 None:intergenic 30.0%
ACATTCAAACTAGTATACGT+TGG + chr1.1:32474599-32474618 None:intergenic 30.0%
ATAAATTCTTCTTGCTCCAT+AGG + chr1.1:32474229-32474248 None:intergenic 30.0%
ATGAGCAATAATGAAGCAAA+TGG + chr1.1:32474710-32474729 None:intergenic 30.0%
ATTCAAACTAGTATACGTTG+GGG + chr1.1:32474597-32474616 None:intergenic 30.0%
CATTCAAACTAGTATACGTT+GGG + chr1.1:32474598-32474617 None:intergenic 30.0%
GATTATAGTAGCTATCAAGT+TGG - chr1.1:32476105-32476124 MS.gene037944:CDS 30.0%
TAAAACCAATGGCCAAAAAT+TGG - chr1.1:32475813-32475832 MS.gene037944:intron 30.0%
TAAGTTAAACGACACAACTT+TGG - chr1.1:32476213-32476232 MS.gene037944:intron 30.0%
TCTGTAACGTTCTTAACTTT+AGG + chr1.1:32474060-32474079 None:intergenic 30.0%
TCTTCACCTCCTTATTAAAA+TGG + chr1.1:32475569-32475588 None:intergenic 30.0%
TGAAAATTCTCAATTTGTGC+AGG - chr1.1:32475325-32475344 MS.gene037944:intron 30.0%
TTGTTATCTGATTATGCAGA+TGG - chr1.1:32474180-32474199 MS.gene037944:intron 30.0%
! AATATTCACCGATTATGAGA+AGG - chr1.1:32475002-32475021 MS.gene037944:CDS 30.0%
! ACATATTTGAGGCAATTCAA+TGG + chr1.1:32474319-32474338 None:intergenic 30.0%
! CATATTTGAGGCAATTCAAT+GGG + chr1.1:32474318-32474337 None:intergenic 30.0%
! TTATAGTAGCTATCAAGTTG+GGG - chr1.1:32476107-32476126 MS.gene037944:CDS 30.0%
! TTGAGCTTTATGTAAGCATA+AGG + chr1.1:32475676-32475695 None:intergenic 30.0%
! TTTTCAGACATCAAACACAA+AGG + chr1.1:32475311-32475330 None:intergenic 30.0%
!! AAGTGTCCATTTTAATAAGG+AGG - chr1.1:32475560-32475579 MS.gene037944:CDS 30.0%
!! ACGTTCTTAACTTTAGGTTT+TGG + chr1.1:32474054-32474073 None:intergenic 30.0%
AACCAAAACCTTATGGCATT+AGG + chr1.1:32474504-32474523 None:intergenic 35.0%
AACGCAAAAACTACAGTGAT+GGG + chr1.1:32474750-32474769 None:intergenic 35.0%
ACCTTATGGCATTAGGTATA+TGG + chr1.1:32474497-32474516 None:intergenic 35.0%
AGTCACACTTGAAATAGTAC+AGG + chr1.1:32475243-32475262 None:intergenic 35.0%
AGTCTCATATCAACTGTGAA+TGG - chr1.1:32474433-32474452 MS.gene037944:intron 35.0%
ATAATTCAGAACCACAAGAG+AGG + chr1.1:32474543-32474562 None:intergenic 35.0%
ATTCGTTTGAGGATGATAAG+AGG + chr1.1:32476248-32476267 None:intergenic 35.0%
CCTTATGGCATTAGGTATAT+GGG + chr1.1:32474496-32474515 None:intergenic 35.0%
GTCTCATATCAACTGTGAAT+GGG - chr1.1:32474434-32474453 MS.gene037944:intron 35.0%
TAATAATAACAATGCTGGCG+AGG - chr1.1:32474092-32474111 MS.gene037944:intron 35.0%
TAATTCAGAACCACAAGAGA+GGG + chr1.1:32474542-32474561 None:intergenic 35.0%
TACGACATGGTTAAAACCAA+TGG - chr1.1:32475802-32475821 MS.gene037944:intron 35.0%
TCTTATCATCCTCAAACGAA+TGG - chr1.1:32476247-32476266 MS.gene037944:intron 35.0%
TTTACCGCAAAATGCATGAA+AGG + chr1.1:32476142-32476161 None:intergenic 35.0%
! AAAAGCACAAGAGAGAGATT+GGG - chr1.1:32475363-32475382 MS.gene037944:intron 35.0%
! ATCTTGTTTATCTACCAGAG+GGG + chr1.1:32475464-32475483 None:intergenic 35.0%
! CAATCCTTTCATGCATTTTG+CGG - chr1.1:32476135-32476154 MS.gene037944:CDS 35.0%
! CATTTTGCGGTAAAATTGCA+TGG - chr1.1:32476148-32476167 MS.gene037944:CDS 35.0%
! GATCTTGTTTATCTACCAGA+GGG + chr1.1:32475465-32475484 None:intergenic 35.0%
! TACCTAATGCCATAAGGTTT+TGG - chr1.1:32474499-32474518 MS.gene037944:intron 35.0%
! TGTACTTATGTTGCTTCACA+TGG - chr1.1:32476302-32476321 MS.gene037944:CDS 35.0%
!! TAATGCCATAAGGTTTTGGT+TGG - chr1.1:32474503-32474522 MS.gene037944:intron 35.0%
!! TTCTCACAAGTGTTTTCAAG+TGG - chr1.1:32474383-32474402 MS.gene037944:intron 35.0%
!!! TGATTCCAATTTTTGGCCAT+TGG + chr1.1:32475821-32475840 None:intergenic 35.0%
AAAGCACAAGAGAGAGATTG+GGG - chr1.1:32475364-32475383 MS.gene037944:intron 40.0%
AATTCATCAACCTTCGAGTG+TGG - chr1.1:32475409-32475428 MS.gene037944:intron 40.0%
ACATCTTCTCAAACCTGCAT+AGG + chr1.1:32475983-32476002 None:intergenic 40.0%
AGGATGATAAGAGGTTCTCA+TGG + chr1.1:32476239-32476258 None:intergenic 40.0%
ATGGCTGTTTATGATGAAGC+CGG - chr1.1:32474199-32474218 MS.gene037944:intron 40.0%
CACAAAGGAAACAGAAGATC+AGG + chr1.1:32475296-32475315 None:intergenic 40.0%
CATCTCCAACCAAAACCTTA+TGG + chr1.1:32474511-32474530 None:intergenic 40.0%
CCCATATACCTAATGCCATA+AGG - chr1.1:32474493-32474512 MS.gene037944:intron 40.0%
CTTAGGAGGCTTAAATTCCA+AGG + chr1.1:32474284-32474303 None:intergenic 40.0%
GAAACAGAAGATCAGGTAAG+TGG + chr1.1:32475289-32475308 None:intergenic 40.0%
GAACGCAAAAACTACAGTGA+TGG + chr1.1:32474751-32474770 None:intergenic 40.0%
GAGACAATGTGCATCAGTTT+CGG - chr1.1:32475089-32475108 MS.gene037944:intron 40.0%
GGGACTTGATAAAACTTAGG+AGG + chr1.1:32474298-32474317 None:intergenic 40.0%
GGTTTGAGAAGATGTGGTTA+TGG - chr1.1:32475988-32476007 MS.gene037944:intron 40.0%
TAAGCTTCTCTTGACCTTGA+AGG + chr1.1:32475607-32475626 None:intergenic 40.0%
TATGCAGGTTTGAGAAGATG+TGG - chr1.1:32475982-32476001 MS.gene037944:intron 40.0%
TATTGCTATGACCACGTTCA+AGG - chr1.1:32476401-32476420 MS.gene037944:CDS 40.0%
TCAGGTAAGTGGCTAGAAAA+AGG + chr1.1:32475278-32475297 None:intergenic 40.0%
TCATATCAACTGTGAATGGG+CGG - chr1.1:32474437-32474456 MS.gene037944:intron 40.0%
TGGTCATAGCAATACTACTC+TGG + chr1.1:32476395-32476414 None:intergenic 40.0%
! CAAGTCTTATCACGCTAGAT+GGG + chr1.1:32474809-32474828 None:intergenic 40.0%
! CATCAGTTTCGGTGTGAATT+TGG - chr1.1:32475100-32475119 MS.gene037944:intron 40.0%
! CTTATGTTGCTTCACATGGT+CGG - chr1.1:32476306-32476325 MS.gene037944:CDS 40.0%
! GAAAAGCACAAGAGAGAGAT+TGG - chr1.1:32475362-32475381 MS.gene037944:intron 40.0%
! GGATCTTGTTTATCTACCAG+AGG + chr1.1:32475466-32475485 None:intergenic 40.0%
! GTTGATGAATTGATCCGACA+GGG + chr1.1:32475400-32475419 None:intergenic 40.0%
! TCTTGTTTATCTACCAGAGG+GGG + chr1.1:32475463-32475482 None:intergenic 40.0%
!! ACATAACGGGTATGACCAAT+GGG + chr1.1:32476444-32476463 None:intergenic 40.0%
!! CAAGCATCACTAGTCGATTT+TGG - chr1.1:32476179-32476198 MS.gene037944:CDS 40.0%
!! TACATAACGGGTATGACCAA+TGG + chr1.1:32476445-32476464 None:intergenic 40.0%
!! TCAAGGCATTGGTACATAAC+GGG + chr1.1:32476457-32476476 None:intergenic 40.0%
!! TTGTTCAAGTTGAGGAGTGA+GGG + chr1.1:32474025-32474044 None:intergenic 40.0%
!!! TAAGGTTTTGGTTGGAGATG+TGG - chr1.1:32474511-32474530 MS.gene037944:intron 40.0%
AATCGACTAGTGATGCTTGC+AGG + chr1.1:32476178-32476197 None:intergenic 45.0%
ACCTTCGAGTGTGGAAAAAG+AGG - chr1.1:32475418-32475437 MS.gene037944:intron 45.0%
ACTGAGACTAACAACTCGCA+CGG + chr1.1:32474416-32474435 None:intergenic 45.0%
AGAGCTGTTATCAGACTAGG+TGG - chr1.1:32474666-32474685 MS.gene037944:intron 45.0%
CATCCAGAAGTTCTGTCACA+AGG + chr1.1:32475173-32475192 None:intergenic 45.0%
CCATCTAGCGTGATAAGACT+TGG - chr1.1:32474807-32474826 MS.gene037944:intron 45.0%
CTACCGTGAGTGTAAAAGCA+TGG - chr1.1:32475708-32475727 MS.gene037944:CDS 45.0%
GAATGCGGTATTGTACGACA+TGG - chr1.1:32475789-32475808 MS.gene037944:intron 45.0%
TAGTCTAGGGAGAGCAACAA+CGG + chr1.1:32474570-32474589 None:intergenic 45.0%
TCGAGCATTTCTACAGATCG+AGG - chr1.1:32474257-32474276 MS.gene037944:intron 45.0%
TCGGACTAACCATTCGTTTG+AGG + chr1.1:32476259-32476278 None:intergenic 45.0%
TGGAGAGCTGTTATCAGACT+AGG - chr1.1:32474663-32474682 MS.gene037944:intron 45.0%
TGTCCTTGTGACAGAACTTC+TGG - chr1.1:32475167-32475186 MS.gene037944:CDS 45.0%
TTTCTACAGATCGAGGTCCT+TGG - chr1.1:32474264-32474283 MS.gene037944:intron 45.0%
! ACCTCTTTTTCCACACTCGA+AGG + chr1.1:32475422-32475441 None:intergenic 45.0%
! CCAAGTCTTATCACGCTAGA+TGG + chr1.1:32474810-32474829 None:intergenic 45.0%
! CCTCCATGCTTTTACACTCA+CGG + chr1.1:32475714-32475733 None:intergenic 45.0%
! CGTGAGTGTAAAAGCATGGA+GGG - chr1.1:32475712-32475731 MS.gene037944:CDS 45.0%
! TCTGAGTCTAGTTCCTATGC+AGG - chr1.1:32475967-32475986 MS.gene037944:intron 45.0%
!! ACAGGCATGCTACTTTCACA+TGG - chr1.1:32476019-32476038 MS.gene037944:intron 45.0%
!! CATAACGGGTATGACCAATG+GGG + chr1.1:32476443-32476462 None:intergenic 45.0%
!! CTTATTTTCTCATCGGCTGC+AGG - chr1.1:32474637-32474656 MS.gene037944:intron 45.0%
!! GGTTGATGAATTGATCCGAC+AGG + chr1.1:32475401-32475420 None:intergenic 45.0%
!! GGTTGCTGTTGTTCAAGTTG+AGG + chr1.1:32474033-32474052 None:intergenic 45.0%
!! GTTGTTCAAGTTGAGGAGTG+AGG + chr1.1:32474026-32474045 None:intergenic 45.0%
ACGTTGGGGAGTCTAGTCTA+GGG + chr1.1:32474583-32474602 None:intergenic 50.0%
AGGAGGTGAAGACTCAGATG+AGG - chr1.1:32475577-32475596 MS.gene037944:intron 50.0%
AGTCTAGGGAGAGCAACAAC+GGG + chr1.1:32474569-32474588 None:intergenic 50.0%
CAGACTAGGTGGCTATGAAG+TGG - chr1.1:32474677-32474696 MS.gene037944:intron 50.0%
CTTGTCTCGGCTGTTGTCTT+GGG - chr1.1:32476339-32476358 MS.gene037944:CDS 50.0%
GCCATGAGATGGCGATATAG+AGG + chr1.1:32475141-32475160 None:intergenic 50.0%
GCCTCTATATCGCCATCTCA+TGG - chr1.1:32475137-32475156 MS.gene037944:CDS 50.0%
GGACAACTCATGCCATGAGA+TGG + chr1.1:32475152-32475171 None:intergenic 50.0%
GGAGGTGAAGACTCAGATGA+GGG - chr1.1:32475578-32475597 MS.gene037944:intron 50.0%
GTGAAAGTAGCATGCCTGTG+AGG + chr1.1:32476018-32476037 None:intergenic 50.0%
GTGGTTATGGCTTTCCTCAC+AGG - chr1.1:32476001-32476020 MS.gene037944:intron 50.0%
TACGTTGGGGAGTCTAGTCT+AGG + chr1.1:32474584-32474603 None:intergenic 50.0%
TATTGCTCTTTGTCCCCCTC+TGG - chr1.1:32475447-32475466 MS.gene037944:intron 50.0%
TTCTTGCTCCATAGGCGTAC+CGG + chr1.1:32474221-32474240 None:intergenic 50.0%
! CCGTGAGTGTAAAAGCATGG+AGG - chr1.1:32475711-32475730 MS.gene037944:CDS 50.0%
! TTCTCATCGGCTGCAGGTTA+TGG - chr1.1:32474643-32474662 MS.gene037944:intron 50.0%
!! TCAGATGAGGGTGTCCTTCA+AGG - chr1.1:32475590-32475609 MS.gene037944:intron 50.0%
ACCACGTTCAAGGATGCCTG+CGG - chr1.1:32476411-32476430 MS.gene037944:CDS 55.0%
CAACAGCCGAGACAAGGACT+TGG + chr1.1:32476335-32476354 None:intergenic 55.0%
CCAAGACAACAGCCGAGACA+AGG + chr1.1:32476341-32476360 None:intergenic 55.0%
CCTTGTCTCGGCTGTTGTCT+TGG - chr1.1:32476338-32476357 MS.gene037944:CDS 55.0%
CGGACACCAAGTCCTTGTCT+CGG - chr1.1:32476326-32476345 MS.gene037944:CDS 55.0%
GTGTCATCAGCAGCAGCATC+AGG + chr1.1:32473988-32474007 None:intergenic 55.0%
GTTCAAGGATGCCTGCGGAA+GGG - chr1.1:32476416-32476435 MS.gene037944:CDS 55.0%
TGATGAAGCCGGTACGCCTA+TGG - chr1.1:32474210-32474229 MS.gene037944:intron 55.0%
TGTGGTGTCTCCCTCTCTTG+TGG - chr1.1:32474529-32474548 MS.gene037944:intron 55.0%
TTATACTCCCGCGCATCGTG+CGG - chr1.1:32475939-32475958 MS.gene037944:intron 55.0%
TTCAAGGATGCCTGCGGAAG+GGG - chr1.1:32476417-32476436 MS.gene037944:CDS 55.0%
CGTTCAAGGATGCCTGCGGA+AGG - chr1.1:32476415-32476434 MS.gene037944:CDS 60.0%
TATACTCCCGCGCATCGTGC+GGG - chr1.1:32475940-32475959 MS.gene037944:intron 60.0%
TCCGCAGGCATCCTTGAACG+TGG + chr1.1:32476415-32476434 None:intergenic 60.0%
GGGGAGCTACAGCTCCCTGT+CGG - chr1.1:32475383-32475402 MS.gene037944:intron 65.0%
ACCAATGGGGCCCCTTCCGC+AGG + chr1.1:32476430-32476449 None:intergenic 70.0%
AGACCCACCCGCACGATGCG+CGG + chr1.1:32475950-32475969 None:intergenic 70.0%
ACTCCCGCGCATCGTGCGGG+TGG - chr1.1:32475943-32475962 MS.gene037944:intron 75.0%
CTCCCGCGCATCGTGCGGGT+GGG - chr1.1:32475944-32475963 MS.gene037944:intron 75.0%
GACCCACCCGCACGATGCGC+GGG + chr1.1:32475949-32475968 None:intergenic 75.0%
GCCTGCGGAAGGGGCCCCAT+TGG - chr1.1:32476426-32476445 MS.gene037944:CDS 75.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 32473925 32476476 32473925 ID=MS.gene037944
chr1.1 mRNA 32473925 32476476 32473925 ID=MS.gene037944.t1;Parent=MS.gene037944
chr1.1 exon 32476288 32476476 32476288 ID=MS.gene037944.t1.exon1;Parent=MS.gene037944.t1
chr1.1 CDS 32476288 32476476 32476288 ID=cds.MS.gene037944.t1;Parent=MS.gene037944.t1
chr1.1 exon 32476030 32476202 32476030 ID=MS.gene037944.t1.exon2;Parent=MS.gene037944.t1
chr1.1 CDS 32476030 32476202 32476030 ID=cds.MS.gene037944.t1;Parent=MS.gene037944.t1
chr1.1 exon 32475703 32475742 32475703 ID=MS.gene037944.t1.exon3;Parent=MS.gene037944.t1
chr1.1 CDS 32475703 32475742 32475703 ID=cds.MS.gene037944.t1;Parent=MS.gene037944.t1
chr1.1 exon 32475531 32475586 32475531 ID=MS.gene037944.t1.exon4;Parent=MS.gene037944.t1
chr1.1 CDS 32475531 32475586 32475531 ID=cds.MS.gene037944.t1;Parent=MS.gene037944.t1
chr1.1 exon 32475131 32475188 32475131 ID=MS.gene037944.t1.exon5;Parent=MS.gene037944.t1
chr1.1 CDS 32475131 32475188 32475131 ID=cds.MS.gene037944.t1;Parent=MS.gene037944.t1
chr1.1 exon 32474962 32475054 32474962 ID=MS.gene037944.t1.exon6;Parent=MS.gene037944.t1
chr1.1 CDS 32474962 32475054 32474962 ID=cds.MS.gene037944.t1;Parent=MS.gene037944.t1
chr1.1 exon 32473925 32474005 32473925 ID=MS.gene037944.t1.exon7;Parent=MS.gene037944.t1
chr1.1 CDS 32473925 32474005 32473925 ID=cds.MS.gene037944.t1;Parent=MS.gene037944.t1
Gene Sequence

>MS.gene037944

ATGGAGGGTCATGAAATGGATCTCGTTCAGAATGTTGCTGATCAAGAAATGCTTGATCAACCTGATGCTGCTGCTGATGACACAGAAGTCAATTCTACCCTCACTCCTCAACTTGAACAACAGCAACCAAAACCTAAAGTTAAGAACGTTACAGAAGTGAATAACAATAATAATAACAATGCTGGCGAGGTAGTAACTACTTTCTGATTGATTTCATTATTTATTATAAGAACCATTGTTTTGAATACATTTTAATTGTTATCTGATTATGCAGATGGCTGTTTATGATGAAGCCGGTACGCCTATGGAGCAAGAAGAATTTATGAAAGAGCTCGAGCATTTCTACAGATCGAGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATCAAGTCCCATTGAATTGCCTCAAATATGTATCAGATTATATCCCTTCAAATTGTTTATTAGAGTGATTTCTTTTTCTCACAAGTGTTTTCAAGTGGTTCAAGTCCGTGCGAGTTGTTAGTCTCAGTCTCATATCAACTGTGAATGGGCGGCTAAATGCTGAATATATAAGAGAAGTCGAGTGACCCATATACCTAATGCCATAAGGTTTTGGTTGGAGATGTGGTGTCTCCCTCTCTTGTGGTTCTGAATTATTAGCCCGTTGTTGCTCTCCCTAGACTAGACTCCCCAACGTATACTAGTTTGAATGTTTTTCTGATAGAAGATTGCTTATTTTCTCATCGGCTGCAGGTTATGGAGAGCTGTTATCAGACTAGGTGGCTATGAAGTGGTACAGATCCATTTGCTTCATTATTGCTCATTCTTTGCATGCTTATAGCCCATCACTGTAGTTTTTGCGTTCTATAGTTTTAACAATGCTGTCAGAGATATACATTTCCCATCTAGCGTGATAAGACTTGGTTGTTGTTGTTGTTTGTGAACATATCATTATATTCTAGTTTGTTTGGTATTCTTCATTTTTATTTCATTTAGTGCTATATGTTTAGGGATCTTTATTAAGTTCTCTTATGTTTTTGGCCATTTTCATTTTATTAATACTATGTTTTTGCCTGTTCAAAAAGAAATAACTGACAATATTCACCGATTATGAGAAGGTAACATTTCTGTTTCATTAGTTTATTCTTAGTAAATAGATACAATTCATAATCTGTATCAACGAGAGACAATGTGCATCAGTTTCGGTGTGAATTTGGAAAAAGTGTCTTCAGCCTCTATATCGCCATCTCATGGCATGAGTTGTCCTTGTGACAGAACTTCTGGATGCCAATGAAAATGAAACCAAGATTTTCAGTTATTACATGCTTTTCTGTCCTGTACTATTTCAAGTGTGACTTTTGTTTTGTTGCCTTTTTCTAGCCACTTACCTGATCTTCTGTTTCCTTTGTGTTTGATGTCTGAAAATTCTCAATTTGTGCAGGCACTTTTAGAGTATGAAAAGCACAAGAGAGAGATTGGGGAGCTACAGCTCCCTGTCGGATCAATTCATCAACCTTCGAGTGTGGAAAAAGAGGTTTGTATATTGCTCTTTGTCCCCCTCTGGTAGATAAACAAGATCCATAAATTTCATATCCATTTGTTTTTCATCCATAAATAAGATAAGAATATGATGGAGATTAACGAGATCCCTTTCAAGTGTCCATTTTAATAAGGAGGTGAAGACTCAGATGAGGGTGTCCTTCAAGGTCAAGAGAAGCTTATGTTTTAAACGTTGTTAATTTTATTGTCTCATTATGCATGACGATACCTTATGCTTACATAAAGCTCAAATTTAAGTTTTTCTACCGTGAGTGTAAAAGCATGGAGGGTAAAGATGTAAAAGCTTAAGTGCAAGAGAAGTAAATTATACTTTCAATTTAAGTGAATGCGGTATTGTACGACATGGTTAAAACCAATGGCCAAAAATTGGAATCAAGTTTTCAAGTATTCATAAACTTCTTATTAATAAGTTACAGACATAAAATTCACTTTCTAATTAATTACAATTATTTACCTTTCAACAAAAAACGAATTTATACTCCCGCGCATCGTGCGGGTGGGTCTGAGTCTAGTTCCTATGCAGGTTTGAGAAGATGTGGTTATGGCTTTCCTCACAGGCATGCTACTTTCACATGGCTTTATTGTAAATTTTGTAGTTATTGACTATTTGTTGAAATATGGACATTAGATTTGAAGTCTGATTATAGTAGCTATCAAGTTGGGGTTGCACAATCCTTTCATGCATTTTGCGGTAAAATTGCATGGTATTCCTGCAAGCATCACTAGTCGATTTTGGCAACAACTATTTAAGTTAAACGACACAACTTTGGCCATGAGAACCTCTTATCATCCTCAAACGAATGGTTAGTCCGAAGCGCTTAAAAAATATATAGAATTGTACTTATGTTGCTTCACATGGTCGGACACCAAGTCCTTGTCTCGGCTGTTGTCTTGGGCCGAATATTGATATAATACATCGTTACGTTCCAGAGTAGTATTGCTATGACCACGTTCAAGGATGCCTGCGGAAGGGGCCCCATTGGTCATACCCGTTATGTACCAATGCCTTGA
Protein sequence

>MS.gene037944.t1

MEGHEMDLVQNVADQEMLDQPDAAADDTEVNSTLTPQLEQQQPKPKVKNVTEVNNNNNNNAGEMAVYDEAGTPMEQEEFMKELEHFYRSRSLEFKPPKFYQVPLNCLKYVSDYIPSNCLLELWRAVIRLGGYEVRDKTWLLLLFVNISLYSSLFSVITCFSVLYYFKCDFCFALLEYEKHKREIGELQLPVGSIHQPSSVEKESSIAMTTFKDACGRGPIGHTRYVPMP