Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037969.t1 | XP_024631418.1 | 91.2 | 249 | 22 | 0 | 1 | 249 | 1 | 249 | 7.20E-121 | 443.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037969.t1 | Q9M1K1 | 41.4 | 249 | 135 | 4 | 1 | 240 | 1 | 247 | 2.2e-41 | 170.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037969.t1 | A0A396JNS6 | 92.2 | 244 | 19 | 0 | 1 | 244 | 1 | 244 | 5.4e-118 | 433.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene037969.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037969.t1 | MTR_1g048720 | 92.213 | 244 | 19 | 0 | 1 | 244 | 1 | 244 | 5.93e-166 | 458 |
| MS.gene037969.t1 | MTR_1g048720 | 91.803 | 244 | 19 | 1 | 1 | 244 | 1 | 243 | 1.64e-163 | 452 |
| MS.gene037969.t1 | MTR_1g048720 | 93.151 | 219 | 15 | 0 | 1 | 219 | 1 | 219 | 2.68e-151 | 420 |
| MS.gene037969.t1 | MTR_1g048710 | 87.149 | 249 | 23 | 2 | 1 | 249 | 1 | 240 | 5.28e-150 | 418 |
| MS.gene037969.t1 | MTR_1g048720 | 92.694 | 219 | 15 | 1 | 1 | 219 | 1 | 218 | 7.93e-149 | 414 |
| MS.gene037969.t1 | MTR_1g048750 | 85.321 | 218 | 24 | 1 | 1 | 218 | 1 | 210 | 4.29e-136 | 384 |
| MS.gene037969.t1 | MTR_7g090410 | 58.964 | 251 | 84 | 7 | 1 | 241 | 1 | 242 | 8.10e-68 | 210 |
| MS.gene037969.t1 | MTR_0007s0330 | 31.447 | 159 | 97 | 5 | 65 | 220 | 6 | 155 | 9.16e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene037969.t1 | AT3G56970 | 41.339 | 254 | 128 | 5 | 1 | 240 | 1 | 247 | 1.02e-56 | 182 |
| MS.gene037969.t1 | AT3G56980 | 40.230 | 261 | 130 | 5 | 1 | 242 | 1 | 254 | 9.12e-47 | 156 |
| MS.gene037969.t1 | AT2G41240 | 38.889 | 252 | 130 | 5 | 1 | 242 | 1 | 238 | 3.58e-46 | 154 |
| MS.gene037969.t1 | AT2G41240 | 38.492 | 252 | 130 | 6 | 1 | 242 | 1 | 237 | 1.26e-43 | 147 |
| MS.gene037969.t1 | AT5G04150 | 44.809 | 183 | 93 | 4 | 60 | 237 | 78 | 257 | 5.13e-37 | 131 |
| MS.gene037969.t1 | AT5G04150 | 46.012 | 163 | 83 | 2 | 60 | 219 | 78 | 238 | 1.04e-36 | 130 |
Find 51 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCACCTGTTTCTGTAATTC+TGG | 0.155913 | 1.1:-33304392 | None:intergenic |
| TGATGCTGGTTATGGGTTAT+TGG | 0.230970 | 1.1:-33304015 | None:intergenic |
| TGTAACTATGCTTCTTCCTT+TGG | 0.251062 | 1.1:-33304493 | None:intergenic |
| CTTCTATAATTTGCATTTCC+AGG | 0.251812 | 1.1:+33304685 | MS.gene037969:CDS |
| GAGCTTCTCATTTAGAATTT+CGG | 0.255939 | 1.1:-33307599 | None:intergenic |
| TTCTGAGATCTTGATATGTT+TGG | 0.287728 | 1.1:+33304604 | MS.gene037969:CDS |
| GTAACTATGCTTCTTCCTTT+GGG | 0.307422 | 1.1:-33304492 | None:intergenic |
| TGAGAAGCTCTTATCAATAA+TGG | 0.319674 | 1.1:+33307612 | MS.gene037969:CDS |
| CTTTCTTCATCTCAGACCTT+TGG | 0.339976 | 1.1:+33304653 | MS.gene037969:CDS |
| ATGAACTCTGATGCTGGTTA+TGG | 0.359283 | 1.1:-33304023 | None:intergenic |
| AGGACTCTTGAAATTGTTGC+TGG | 0.367920 | 1.1:-33304359 | None:intergenic |
| GATCGCGTTCACTAGCATTA+TGG | 0.375108 | 1.1:-33304164 | None:intergenic |
| TAGAATAACCTCTTCTACTT+GGG | 0.395863 | 1.1:-33304459 | None:intergenic |
| TCTTCATCTCAGACCTTTGG+AGG | 0.399010 | 1.1:+33304656 | MS.gene037969:CDS |
| AGTACCATTTGATCTGAAAC+AGG | 0.414053 | 1.1:-33304234 | None:intergenic |
| CATACCAGAATTACAGAAAC+AGG | 0.417584 | 1.1:+33304388 | MS.gene037969:CDS |
| GCTCTTATCAATAATGGATA+AGG | 0.434619 | 1.1:+33307618 | MS.gene037969:CDS |
| ATCTCAGACCTTTGGAGGGA+GGG | 0.436300 | 1.1:+33304661 | MS.gene037969:CDS |
| TCTTCCTGTTTCAGATCAAA+TGG | 0.439923 | 1.1:+33304230 | MS.gene037969:CDS |
| TTAGAATAACCTCTTCTACT+TGG | 0.448901 | 1.1:-33304460 | None:intergenic |
| ATGGGTTATTGGCTCCTCAA+AGG | 0.463079 | 1.1:-33304004 | None:intergenic |
| AACAATTGGATGGCCCTTTG+AGG | 0.464251 | 1.1:+33303990 | MS.gene037969:CDS |
| TGAACTCTGATGCTGGTTAT+GGG | 0.477659 | 1.1:-33304022 | None:intergenic |
| TGGGTTATTGGCTCCTCAAA+GGG | 0.488564 | 1.1:-33304003 | None:intergenic |
| CATATCAAGATCTCAGAAAG+TGG | 0.493296 | 1.1:-33304599 | None:intergenic |
| CATGCCAAGGTCACTGCTTG+TGG | 0.499479 | 1.1:-33304127 | None:intergenic |
| CATCTCAGACCTTTGGAGGG+AGG | 0.501008 | 1.1:+33304660 | MS.gene037969:CDS |
| AAGAAAGATTAAGAAGCAAA+AGG | 0.505181 | 1.1:-33304637 | None:intergenic |
| CTTCATCTCAGACCTTTGGA+GGG | 0.506754 | 1.1:+33304657 | MS.gene037969:CDS |
| ACAAATTATTGATCTTCTTG+CGG | 0.529574 | 1.1:-33304188 | None:intergenic |
| TTGATATGTTTGGAAAATGA+TGG | 0.537710 | 1.1:+33304614 | MS.gene037969:CDS |
| AAGAAGCATAGTTACAACTC+TGG | 0.551749 | 1.1:+33304500 | MS.gene037969:CDS |
| ACTTTCTCCCCAAGTAGAAG+AGG | 0.556979 | 1.1:+33304451 | MS.gene037969:CDS |
| CATCCAATTGTTGAAAACAT+AGG | 0.558093 | 1.1:-33303979 | None:intergenic |
| TGTAGAATGAACTCTGATGC+TGG | 0.560692 | 1.1:-33304029 | None:intergenic |
| TTATCAATAATGGATAAGGA+AGG | 0.562276 | 1.1:+33307622 | MS.gene037969:CDS |
| TCTCAGAAAGTGGAATCTTG+TGG | 0.569417 | 1.1:-33304589 | None:intergenic |
| CAATCCACAAGCAGTGACCT+TGG | 0.569748 | 1.1:+33304123 | MS.gene037969:CDS |
| AGTGTAACATGATATCTGAA+TGG | 0.570967 | 1.1:-33304564 | None:intergenic |
| CCAATTGTTGAAAACATAGG+AGG | 0.582074 | 1.1:-33303976 | None:intergenic |
| AGAATAACCTCTTCTACTTG+GGG | 0.586846 | 1.1:-33304458 | None:intergenic |
| ACTAGTTAAGAGAAAAGAAG+AGG | 0.589176 | 1.1:+33304418 | MS.gene037969:CDS |
| GTCACTGCTTGTGGATTGTG+AGG | 0.591686 | 1.1:-33304118 | None:intergenic |
| ATAGAAGACCCTCCCTCCAA+AGG | 0.594272 | 1.1:-33304669 | None:intergenic |
| TATCAATAATGGATAAGGAA+GGG | 0.600012 | 1.1:+33307623 | MS.gene037969:CDS |
| CACAAGCAGTGACCTTGGCA+TGG | 0.602895 | 1.1:+33304128 | MS.gene037969:CDS |
| TTCTAAGCAAAGAATCCCAA+AGG | 0.620328 | 1.1:+33304477 | MS.gene037969:CDS |
| CAAGCTTCTTAACCATGCCA+AGG | 0.655760 | 1.1:-33304140 | None:intergenic |
| ACCAGAATTACAGAAACAGG+TGG | 0.656125 | 1.1:+33304391 | MS.gene037969:CDS |
| GAATTACAGAAACAGGTGGA+AGG | 0.659206 | 1.1:+33304395 | MS.gene037969:CDS |
| TCACTGCTTGTGGATTGTGA+GGG | 0.698792 | 1.1:-33304117 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAATCATTTGTATAA+TGG | - | chr1.1:33305325-33305344 | None:intergenic | 10.0% |
| !! | AAAAAAATCATTTGTATAAT+GGG | - | chr1.1:33305324-33305343 | None:intergenic | 10.0% |
| !! | AAGAAAAAAAGAAAAAAAAA+AGG | + | chr1.1:33305367-33305386 | MS.gene037969:intron | 10.0% |
| !! | AGTATAAAATTTCATTTAAT+AGG | + | chr1.1:33306914-33306933 | MS.gene037969:intron | 10.0% |
| !! | GTATAAAATTTCATTTAATA+GGG | + | chr1.1:33306915-33306934 | MS.gene037969:intron | 10.0% |
| !! | TATAAAATTTCATTTAATAG+GGG | + | chr1.1:33306916-33306935 | MS.gene037969:intron | 10.0% |
| !!! | ACAATTTTTTTTTTTAGTTA+AGG | + | chr1.1:33306267-33306286 | MS.gene037969:intron | 10.0% |
| !!! | ACTAAAAAAAAAAATTGTTT+TGG | - | chr1.1:33306265-33306284 | None:intergenic | 10.0% |
| !!! | CAATTTTTTTTTTTAGTTAA+GGG | + | chr1.1:33306268-33306287 | MS.gene037969:intron | 10.0% |
| !!! | GTTTTTTTGAATTTATTTAA+CGG | + | chr1.1:33306201-33306220 | MS.gene037969:intron | 10.0% |
| !!! | GTTTTTTTGAATTTATTTAA+CGG | - | chr1.1:33306220-33306201 | None:intergenic | 10.0% |
| !! | AATAAATTCAAAAAAACGTT+AGG | + | chr1.1:33305511-33305530 | MS.gene037969:intron | 15.0% |
| !! | AATAAATTCAAAAAAACGTT+AGG | - | chr1.1:33305530-33305511 | None:intergenic | 15.0% |
| !! | AATTAACAAAATCATATAGA+AGG | - | chr1.1:33304269-33304288 | None:intergenic | 15.0% |
| !! | ATAAATTCAAAAAAACGTTA+GGG | + | chr1.1:33305512-33305531 | MS.gene037969:intron | 15.0% |
| !! | ATAAATTCAAAAAAACGTTA+GGG | - | chr1.1:33305531-33305512 | None:intergenic | 15.0% |
| !! | ATTAACAAAATCATATAGAA+GGG | - | chr1.1:33304268-33304287 | None:intergenic | 15.0% |
| !! | GATACTAAATAAATACTTAA+GGG | + | chr1.1:33305587-33305606 | MS.gene037969:intron | 15.0% |
| !! | GTCTTTATATTTAAAAAGTA+TGG | + | chr1.1:33306813-33306832 | MS.gene037969:intron | 15.0% |
| !! | TGATTAATCATTTGAATAAT+GGG | - | chr1.1:33307353-33307372 | None:intergenic | 15.0% |
| !! | TTTGTCATTGTAATATTTAT+AGG | - | chr1.1:33305244-33305263 | None:intergenic | 15.0% |
| !!! | AAAAAACTTAAATGTTCTTT+TGG | - | chr1.1:33305614-33305633 | None:intergenic | 15.0% |
| !!! | AACAATCTTTTTTTTAGTTA+AGG | - | chr1.1:33305443-33305462 | None:intergenic | 15.0% |
| !!! | AACTAAAAAAAAGATTGTTT+TGG | + | chr1.1:33305444-33305463 | MS.gene037969:intron | 15.0% |
| !!! | ACAATCTTTTTTTTAGTTAA+GGG | - | chr1.1:33305442-33305461 | None:intergenic | 15.0% |
| !!! | TTGTCTTTTAAGTATTTATT+TGG | + | chr1.1:33306115-33306134 | MS.gene037969:intron | 15.0% |
| !! | AAAAGACAAAAAGAACATTT+AGG | - | chr1.1:33306104-33306123 | None:intergenic | 20.0% |
| !! | AAACAATGAAACAAAAATGT+AGG | + | chr1.1:33305279-33305298 | MS.gene037969:intron | 20.0% |
| !! | ATAATAACATCATTATCGTT+TGG | + | chr1.1:33306708-33306727 | MS.gene037969:intron | 20.0% |
| !! | CAAAAATTTAACAAATAACG+CGG | + | chr1.1:33306977-33306996 | MS.gene037969:intron | 20.0% |
| !! | CGATACTAAATAAATACTTA+AGG | + | chr1.1:33305586-33305605 | MS.gene037969:intron | 20.0% |
| !! | GATACCAAATATATAGTTAA+GGG | - | chr1.1:33305411-33305430 | None:intergenic | 20.0% |
| !! | GTGATTAATCATTTGAATAA+TGG | - | chr1.1:33307354-33307373 | None:intergenic | 20.0% |
| !! | TTTATTAAAATCAATGTGGA+CGG | - | chr1.1:33307259-33307278 | None:intergenic | 20.0% |
| !! | TTTGAATTTATTTAACGGAA+GGG | + | chr1.1:33306206-33306225 | MS.gene037969:intron | 20.0% |
| !! | TTTGAATTTATTTAACGGAA+GGG | - | chr1.1:33306225-33306206 | None:intergenic | 20.0% |
| !!! | AATGATTTTTTTTGATGAAG+AGG | + | chr1.1:33305332-33305351 | MS.gene037969:intron | 20.0% |
| !!! | ACTTTAATTTGTAGATGTTA+AGG | - | chr1.1:33306781-33306800 | None:intergenic | 20.0% |
| !!! | ATGTTATTGATTGTTATTGT+TGG | - | chr1.1:33305720-33305739 | None:intergenic | 20.0% |
| !!! | ATTAATTGATAGTTCCTTTT+GGG | + | chr1.1:33307541-33307560 | MS.gene037969:intron | 20.0% |
| !!! | GTATTTATTTAGTATCGTTT+TGG | - | chr1.1:33305583-33305602 | None:intergenic | 20.0% |
| !!! | TATTAATTGATAGTTCCTTT+TGG | + | chr1.1:33307540-33307559 | MS.gene037969:intron | 20.0% |
| !!! | TGTTATTGATTGTTATTGTT+GGG | - | chr1.1:33305719-33305738 | None:intergenic | 20.0% |
| !!! | TTTTGAATTTATTTAACGGA+AGG | + | chr1.1:33306205-33306224 | MS.gene037969:intron | 20.0% |
| !!! | TTTTGAATTTATTTAACGGA+AGG | - | chr1.1:33306224-33306205 | None:intergenic | 20.0% |
| ! | AAGAAAGATTAAGAAGCAAA+AGG | - | chr1.1:33304640-33304659 | None:intergenic | 25.0% |
| ! | AAGACTTTACTCAACAATAT+TGG | - | chr1.1:33304755-33304774 | None:intergenic | 25.0% |
| ! | ACAAATTATTGATCTTCTTG+CGG | - | chr1.1:33304191-33304210 | None:intergenic | 25.0% |
| ! | CGATACCAAATATATAGTTA+AGG | - | chr1.1:33306317-33306298 | None:intergenic | 25.0% |
| ! | CGATACCAAATATATAGTTA+GGG | + | chr1.1:33306298-33306317 | MS.gene037969:intron | 25.0% |
| ! | GATACCAAATATATAGTTAG+GGG | + | chr1.1:33306299-33306318 | MS.gene037969:intron | 25.0% |
| ! | TCACTTGACATTTATTTGTT+GGG | + | chr1.1:33307314-33307333 | MS.gene037969:intron | 25.0% |
| ! | TTGATATGTTTGGAAAATGA+TGG | + | chr1.1:33304614-33304633 | MS.gene037969:CDS | 25.0% |
| !! | GTAATTCTGGTATGTATTTT+AGG | - | chr1.1:33304382-33304401 | None:intergenic | 25.0% |
| !! | GTATTTATTTGGTATCGTTT+TGG | + | chr1.1:33306126-33306145 | MS.gene037969:intron | 25.0% |
| !!! | AGGCTTTATTAAAATCAATG+TGG | - | chr1.1:33307263-33307282 | None:intergenic | 25.0% |
| !!! | TAATTTTCATGATCAAGTTG+AGG | + | chr1.1:33304074-33304093 | MS.gene037969:CDS | 25.0% |
| !!! | TATCAATAATGGATAAGGAA+GGG | + | chr1.1:33307623-33307642 | MS.gene037969:CDS | 25.0% |
| !!! | TGAATTCTGTGTTTTTTTTC+TGG | + | chr1.1:33306025-33306044 | MS.gene037969:intron | 25.0% |
| !!! | TTATCAATAATGGATAAGGA+AGG | + | chr1.1:33307622-33307641 | MS.gene037969:CDS | 25.0% |
| !!! | TTGATTTTAATAAAGCCTTC+CGG | + | chr1.1:33307265-33307284 | MS.gene037969:intron | 25.0% |
| ACAAAAAATAGCCAATGCAT+TGG | - | chr1.1:33305220-33305239 | None:intergenic | 30.0% | |
| ACTAGTTAAGAGAAAAGAAG+AGG | + | chr1.1:33304418-33304437 | MS.gene037969:CDS | 30.0% | |
| AGTGTAACATGATATCTGAA+TGG | - | chr1.1:33304567-33304586 | None:intergenic | 30.0% | |
| ATCAATAACAACAACAACAC+AGG | + | chr1.1:33305755-33305774 | MS.gene037969:intron | 30.0% | |
| CATCCAATTGTTGAAAACAT+AGG | - | chr1.1:33303982-33304001 | None:intergenic | 30.0% | |
| CTATATATTTGGTATCGCTT+TGG | + | chr1.1:33305415-33305434 | MS.gene037969:intron | 30.0% | |
| CTATATATTTGGTATCGCTT+TGG | - | chr1.1:33305434-33305415 | None:intergenic | 30.0% | |
| CTTTCAAATAGCTGAAAGTT+CGG | + | chr1.1:33307121-33307140 | MS.gene037969:intron | 30.0% | |
| GAACTTTCAGCTATTTGAAA+GGG | - | chr1.1:33307122-33307141 | None:intergenic | 30.0% | |
| GCGATACCAAATATATAGTT+AGG | + | chr1.1:33306297-33306316 | MS.gene037969:intron | 30.0% | |
| GTCACTTGACATTTATTTGT+TGG | + | chr1.1:33307313-33307332 | MS.gene037969:intron | 30.0% | |
| TAGAATAACCTCTTCTACTT+GGG | - | chr1.1:33304462-33304481 | None:intergenic | 30.0% | |
| TGAGAAGCTCTTATCAATAA+TGG | + | chr1.1:33307612-33307631 | MS.gene037969:CDS | 30.0% | |
| TGATTACAGATCTATCATCA+TGG | - | chr1.1:33307078-33307097 | None:intergenic | 30.0% | |
| TGGTCCCTTAACTATATATT+TGG | + | chr1.1:33305404-33305423 | MS.gene037969:intron | 30.0% | |
| TTAGAATAACCTCTTCTACT+TGG | - | chr1.1:33304463-33304482 | None:intergenic | 30.0% | |
| TTTATCTATGACCAATGCAT+TGG | + | chr1.1:33305206-33305225 | MS.gene037969:intron | 30.0% | |
| ! | AAAAGGCTTAAATGCTCTTT+TGG | + | chr1.1:33305384-33305403 | MS.gene037969:intron | 30.0% |
| ! | AATTGGATTCATGGTTTTTC+TGG | - | chr1.1:33307175-33307194 | None:intergenic | 30.0% |
| ! | ATGCTTTTAGATCCGAAAAT+GGG | - | chr1.1:33305806-33305825 | None:intergenic | 30.0% |
| ! | CAAAAAAACCAACCCATTTT+CGG | + | chr1.1:33305791-33305810 | MS.gene037969:intron | 30.0% |
| ! | CTATGTTTTCAACAATTGGA+TGG | + | chr1.1:33303980-33303999 | MS.gene037969:CDS | 30.0% |
| ! | CTTCTATAATTTGCATTTCC+AGG | + | chr1.1:33304685-33304704 | MS.gene037969:CDS | 30.0% |
| ! | GAGCTTCTCATTTAGAATTT+CGG | - | chr1.1:33307602-33307621 | None:intergenic | 30.0% |
| ! | TATGCTTTTAGATCCGAAAA+TGG | - | chr1.1:33305807-33305826 | None:intergenic | 30.0% |
| ! | TTGTTGTAAGTTGTTATTGC+TGG | - | chr1.1:33305670-33305689 | None:intergenic | 30.0% |
| !! | AGGTCTTTTGAGAAACAATA+GGG | - | chr1.1:33307200-33307219 | None:intergenic | 30.0% |
| !! | GCTCTTATCAATAATGGATA+AGG | + | chr1.1:33307618-33307637 | MS.gene037969:CDS | 30.0% |
| !! | GTTTTGTAGTTTCAAGTAGT+AGG | + | chr1.1:33304522-33304541 | MS.gene037969:CDS | 30.0% |
| !! | TTCTGAGATCTTGATATGTT+TGG | + | chr1.1:33304604-33304623 | MS.gene037969:CDS | 30.0% |
| !!! | ATCCAGAAATTTTGACTTAC+GGG | + | chr1.1:33306626-33306645 | MS.gene037969:intron | 30.0% |
| !!! | GATCCAGAAATTTTGACTTA+CGG | + | chr1.1:33306625-33306644 | MS.gene037969:intron | 30.0% |
| !!! | GGGCAATCTATTATTTTAAG+AGG | + | chr1.1:33306936-33306955 | MS.gene037969:intron | 30.0% |
| !!! | TTCTATTGCTGCAGTTTTTT+CGG | + | chr1.1:33305874-33305893 | MS.gene037969:intron | 30.0% |
| AAATAACGCGGAGAAATTAG+TGG | + | chr1.1:33306989-33307008 | MS.gene037969:intron | 35.0% | |
| AATAACGCGGAGAAATTAGT+GGG | + | chr1.1:33306990-33307009 | MS.gene037969:intron | 35.0% | |
| AGAATAACCTCTTCTACTTG+GGG | - | chr1.1:33304461-33304480 | None:intergenic | 35.0% | |
| CAACTTTGCTTTCTCTCATT+AGG | - | chr1.1:33306545-33306564 | None:intergenic | 35.0% | |
| CATACCAGAATTACAGAAAC+AGG | + | chr1.1:33304388-33304407 | MS.gene037969:CDS | 35.0% | |
| CATATCAAGATCTCAGAAAG+TGG | - | chr1.1:33304602-33304621 | None:intergenic | 35.0% | |
| CCAATTGTTGAAAACATAGG+AGG | - | chr1.1:33303979-33303998 | None:intergenic | 35.0% | |
| CGAACTTTCAGCTATTTGAA+AGG | - | chr1.1:33307123-33307142 | None:intergenic | 35.0% | |
| GTAACTATGCTTCTTCCTTT+GGG | - | chr1.1:33304495-33304514 | None:intergenic | 35.0% | |
| TATTTGAAAGGGTCTTCAGT+TGG | - | chr1.1:33307111-33307130 | None:intergenic | 35.0% | |
| TCCTGTAAAATTAACACACC+TGG | - | chr1.1:33304706-33304725 | None:intergenic | 35.0% | |
| TCTTCCTGTTTCAGATCAAA+TGG | + | chr1.1:33304230-33304249 | MS.gene037969:CDS | 35.0% | |
| TGGTCCCCTAACTATATATT+TGG | - | chr1.1:33306306-33306325 | None:intergenic | 35.0% | |
| TGTAACTATGCTTCTTCCTT+TGG | - | chr1.1:33304496-33304515 | None:intergenic | 35.0% | |
| TTCTAAGCAAAGAATCCCAA+AGG | + | chr1.1:33304477-33304496 | MS.gene037969:CDS | 35.0% | |
| ! | AAGAAGCATAGTTACAACTC+TGG | + | chr1.1:33304500-33304519 | MS.gene037969:CDS | 35.0% |
| ! | AAGAGAATAAATGTGCTGAC+TGG | - | chr1.1:33306473-33306492 | None:intergenic | 35.0% |
| ! | AGTACCATTTGATCTGAAAC+AGG | - | chr1.1:33304237-33304256 | None:intergenic | 35.0% |
| ! | CCTCCTATGTTTTCAACAAT+TGG | + | chr1.1:33303976-33303995 | MS.gene037969:CDS | 35.0% |
| ! | TCCAGGTGTGTTAATTTTAC+AGG | + | chr1.1:33304702-33304721 | MS.gene037969:intron | 35.0% |
| ! | TTTATCTCCGTTACCTGTTT+TGG | + | chr1.1:33305476-33305495 | MS.gene037969:intron | 35.0% |
| ! | TTTTAGATCCGAAAATGGGT+TGG | - | chr1.1:33305802-33305821 | None:intergenic | 35.0% |
| !! | GAGGTCTTTTGAGAAACAAT+AGG | - | chr1.1:33307201-33307220 | None:intergenic | 35.0% |
| !! | GGTCTTTTGAGAAACAATAG+GGG | - | chr1.1:33307199-33307218 | None:intergenic | 35.0% |
| !! | GTCTTTTGAGAAACAATAGG+GGG | - | chr1.1:33307198-33307217 | None:intergenic | 35.0% |
| !!! | TCCAGAAATTTTGACTTACG+GGG | + | chr1.1:33306627-33306646 | MS.gene037969:intron | 35.0% |
| !!! | TTTTGGCTTGAATGCTCTTT+TGG | - | chr1.1:33306326-33306345 | None:intergenic | 35.0% |
| AATAGGGGGAATTGGATTCA+TGG | - | chr1.1:33307184-33307203 | None:intergenic | 40.0% | |
| ACCAGAATTACAGAAACAGG+TGG | + | chr1.1:33304391-33304410 | MS.gene037969:CDS | 40.0% | |
| AGAGAAAGCAAAGTTGCATG+AGG | + | chr1.1:33306549-33306568 | MS.gene037969:intron | 40.0% | |
| AGATCCAAAGCAGTCAGTAA+CGG | + | chr1.1:33306603-33306622 | MS.gene037969:intron | 40.0% | |
| AGCAGGATGTTATCCAATTG+AGG | + | chr1.1:33306390-33306409 | MS.gene037969:intron | 40.0% | |
| AGGACTCTTGAAATTGTTGC+TGG | - | chr1.1:33304362-33304381 | None:intergenic | 40.0% | |
| AGGAGAATTCCACATCTTCA+AGG | + | chr1.1:33306416-33306435 | MS.gene037969:intron | 40.0% | |
| AGGATGTTATCCAATTGAGG+AGG | + | chr1.1:33306393-33306412 | MS.gene037969:intron | 40.0% | |
| ATAACGCGGAGAAATTAGTG+GGG | + | chr1.1:33306991-33307010 | MS.gene037969:intron | 40.0% | |
| ATGTTATCCAATTGAGGAGG+AGG | + | chr1.1:33306396-33306415 | MS.gene037969:intron | 40.0% | |
| ATTTATGTGCCAGTACTCCA+GGG | + | chr1.1:33307488-33307507 | MS.gene037969:intron | 40.0% | |
| CTACCTGCAAAAAACCCAAA+AGG | - | chr1.1:33307558-33307577 | None:intergenic | 40.0% | |
| CTTTCTTCATCTCAGACCTT+TGG | + | chr1.1:33304653-33304672 | MS.gene037969:CDS | 40.0% | |
| GAAGCTTTCTTCTCTTCCAT+GGG | - | chr1.1:33306523-33306542 | None:intergenic | 40.0% | |
| GAAGGGACTAAAACAGGTAA+CGG | + | chr1.1:33306223-33306242 | MS.gene037969:intron | 40.0% | |
| GAATTACAGAAACAGGTGGA+AGG | + | chr1.1:33304395-33304414 | MS.gene037969:CDS | 40.0% | |
| GGGAAACGAAAATGAAGATG+GGG | + | chr1.1:33305917-33305936 | MS.gene037969:intron | 40.0% | |
| GGGGAAACGAAAATGAAGAT+GGG | + | chr1.1:33305916-33305935 | MS.gene037969:intron | 40.0% | |
| GTGCAGAGCTACGAATTTAT+TGG | - | chr1.1:33307147-33307166 | None:intergenic | 40.0% | |
| TATTTATGTGCCAGTACTCC+AGG | + | chr1.1:33307487-33307506 | MS.gene037969:intron | 40.0% | |
| TCTCAGAAAGTGGAATCTTG+TGG | - | chr1.1:33304592-33304611 | None:intergenic | 40.0% | |
| TGAGAAACAATAGGGGGAAT+TGG | - | chr1.1:33307192-33307211 | None:intergenic | 40.0% | |
| TGTAGAATGAACTCTGATGC+TGG | - | chr1.1:33304032-33304051 | None:intergenic | 40.0% | |
| TTAACGGAAGGGACTAAAAC+AGG | + | chr1.1:33306217-33306236 | MS.gene037969:intron | 40.0% | |
| TTAATAAAGCCTTCCGGTAG+AGG | + | chr1.1:33307271-33307290 | MS.gene037969:intron | 40.0% | |
| ! | AACACACCAACCCAGATTTT+GGG | + | chr1.1:33305556-33305575 | MS.gene037969:intron | 40.0% |
| ! | ATGAACTCTGATGCTGGTTA+TGG | - | chr1.1:33304026-33304045 | None:intergenic | 40.0% |
| ! | CTTGATAATCCTGGTAATGC+AGG | - | chr1.1:33307229-33307248 | None:intergenic | 40.0% |
| ! | GGATCTTCTCTTGATAATCC+TGG | - | chr1.1:33307238-33307257 | None:intergenic | 40.0% |
| ! | TGAACTCTGATGCTGGTTAT+GGG | - | chr1.1:33304025-33304044 | None:intergenic | 40.0% |
| ! | TGATGCTGGTTATGGGTTAT+TGG | - | chr1.1:33304018-33304037 | None:intergenic | 40.0% |
| ! | TGGGTTGTTGTTATTGTTGC+TGG | - | chr1.1:33305700-33305719 | None:intergenic | 40.0% |
| ! | TTGCTGGTGATGAATGATGA+AGG | - | chr1.1:33305654-33305673 | None:intergenic | 40.0% |
| !! | AATCCTGGTAATGCAGGTTT+TGG | - | chr1.1:33307223-33307242 | None:intergenic | 40.0% |
| !! | ATACTGACTCCTTGAAGATG+TGG | - | chr1.1:33306428-33306447 | None:intergenic | 40.0% |
| !! | ATCGTTTTGGTCCCAAAATC+TGG | + | chr1.1:33306139-33306158 | MS.gene037969:intron | 40.0% |
| !! | ATCGTTTTGGTCCCAAAATC+TGG | - | chr1.1:33306158-33306139 | None:intergenic | 40.0% |
| !! | GAATAAATGTGCTGACTGGT+TGG | - | chr1.1:33306469-33306488 | None:intergenic | 40.0% |
| !! | GAATAATGGGTTCATGCTCT+TGG | - | chr1.1:33307340-33307359 | None:intergenic | 40.0% |
| !! | TCCACCTGTTTCTGTAATTC+TGG | - | chr1.1:33304395-33304414 | None:intergenic | 40.0% |
| !! | TCGTTTTGGTCCCAAAATCT+GGG | + | chr1.1:33306140-33306159 | MS.gene037969:intron | 40.0% |
| !! | TCGTTTTGGTCCCAAAATCT+GGG | - | chr1.1:33306159-33306140 | None:intergenic | 40.0% |
| !!! | CCAGAAATTTTGACTTACGG+GGG | + | chr1.1:33306628-33306647 | MS.gene037969:intron | 40.0% |
| !!! | GTTCCTTTTGGGTTTTTTGC+AGG | + | chr1.1:33307552-33307571 | MS.gene037969:intron | 40.0% |
| !!! | TTTTTTCGGTACTGTGGATG+AGG | + | chr1.1:33305888-33305907 | MS.gene037969:intron | 40.0% |
| AAAGAACAGCTGCACAGAGA+TGG | - | chr1.1:33305852-33305871 | None:intergenic | 45.0% | |
| AACAATTGGATGGCCCTTTG+AGG | + | chr1.1:33303990-33304009 | MS.gene037969:CDS | 45.0% | |
| ACTTTCTCCCCAAGTAGAAG+AGG | + | chr1.1:33304451-33304470 | MS.gene037969:CDS | 45.0% | |
| CAAGCTTCTTAACCATGCCA+AGG | - | chr1.1:33304143-33304162 | None:intergenic | 45.0% | |
| CCCCCGTAAGTCAAAATTTC+TGG | - | chr1.1:33306631-33306650 | None:intergenic | 45.0% | |
| CTTCATCTCAGACCTTTGGA+GGG | + | chr1.1:33304657-33304676 | MS.gene037969:CDS | 45.0% | |
| GAAGGGACCAAAACAGGTAA+CGG | - | chr1.1:33305486-33305505 | None:intergenic | 45.0% | |
| GAATTCTCCTCCTCCTCAAT+TGG | - | chr1.1:33306406-33306425 | None:intergenic | 45.0% | |
| GATCGCGTTCACTAGCATTA+TGG | - | chr1.1:33304167-33304186 | None:intergenic | 45.0% | |
| GGAAGCTTTCTTCTCTTCCA+TGG | - | chr1.1:33306524-33306543 | None:intergenic | 45.0% | |
| GGGGGAAACGAAAATGAAGA+TGG | + | chr1.1:33305915-33305934 | MS.gene037969:intron | 45.0% | |
| TAACGCGGAGAAATTAGTGG+GGG | + | chr1.1:33306992-33307011 | MS.gene037969:intron | 45.0% | |
| TCTTCATCTCAGACCTTTGG+AGG | + | chr1.1:33304656-33304675 | MS.gene037969:CDS | 45.0% | |
| TGACTAAATGAGACCACCCA+TGG | + | chr1.1:33306504-33306523 | MS.gene037969:intron | 45.0% | |
| TTAACGGAAGGGACCAAAAC+AGG | - | chr1.1:33305492-33305511 | None:intergenic | 45.0% | |
| TTGGTCCCAAAATCTGGGTT+GGG | + | chr1.1:33306145-33306164 | MS.gene037969:intron | 45.0% | |
| TTTATGTGCCAGTACTCCAG+GGG | + | chr1.1:33307489-33307508 | MS.gene037969:intron | 45.0% | |
| TTTGGTCCCAAAATCTGGGT+TGG | + | chr1.1:33306144-33306163 | MS.gene037969:intron | 45.0% | |
| TTTGGTCCCAAAATCTGGGT+TGG | - | chr1.1:33306163-33306144 | None:intergenic | 45.0% | |
| ! | AACACCCCAACCCAGATTTT+GGG | - | chr1.1:33306153-33306172 | None:intergenic | 45.0% |
| ! | AAGTGACTAGTCAAGTGCGT+TGG | - | chr1.1:33307300-33307319 | None:intergenic | 45.0% |
| ! | CAACACACCAACCCAGATTT+TGG | + | chr1.1:33305555-33305574 | MS.gene037969:intron | 45.0% |
| ! | GCTGACTGGTTGGCTAAATT+TGG | - | chr1.1:33306459-33306478 | None:intergenic | 45.0% |
| ! | TCACTGCTTGTGGATTGTGA+GGG | - | chr1.1:33304120-33304139 | None:intergenic | 45.0% |
| !! | ATCCACTTGTAGTGGATTGG+AGG | - | chr1.1:33307024-33307043 | None:intergenic | 45.0% |
| !! | ATGGGTTATTGGCTCCTCAA+AGG | - | chr1.1:33304007-33304026 | None:intergenic | 45.0% |
| !! | TGGGTTATTGGCTCCTCAAA+GGG | - | chr1.1:33304006-33304025 | None:intergenic | 45.0% |
| !!! | CGAATACCTCTGGGGTTTTT+AGG | - | chr1.1:33306368-33306387 | None:intergenic | 45.0% |
| !!! | CTGCAGTTTTTTCGGTACTG+TGG | + | chr1.1:33305882-33305901 | MS.gene037969:intron | 45.0% |
| !!! | GCGGATCGGCTAGTTTTTTT+TGG | - | chr1.1:33306343-33306362 | None:intergenic | 45.0% |
| !!! | TTTTTTTAAAAGAAAAATAT+TGG | + | chr1.1:33307423-33307442 | MS.gene037969:intron | 5.0% |
| AAAGGGTCTTCAGTTGGCGT+GGG | - | chr1.1:33307105-33307124 | None:intergenic | 50.0% | |
| AGTGCGTTGGAATCCTCTAC+CGG | - | chr1.1:33307287-33307306 | None:intergenic | 50.0% | |
| ATAGAAGACCCTCCCTCCAA+AGG | - | chr1.1:33304672-33304691 | None:intergenic | 50.0% | |
| ATCCTGCTTGCGAATACCTC+TGG | - | chr1.1:33306378-33306397 | None:intergenic | 50.0% | |
| ATGGGGAGAGAGAGATGGAA+TGG | + | chr1.1:33305934-33305953 | MS.gene037969:intron | 50.0% | |
| CAATCCACAAGCAGTGACCT+TGG | + | chr1.1:33304123-33304142 | MS.gene037969:CDS | 50.0% | |
| CCTCCAAAACCTGCATTACC+AGG | + | chr1.1:33307217-33307236 | MS.gene037969:intron | 50.0% | |
| CGGTACTGTGGATGAGGTTT+GGG | + | chr1.1:33305894-33305913 | MS.gene037969:intron | 50.0% | |
| CTGACTCTCAGACTGCTTTC+AGG | - | chr1.1:33307052-33307071 | None:intergenic | 50.0% | |
| GCTTTCTTCTCTTCCATGGG+TGG | - | chr1.1:33306520-33306539 | None:intergenic | 50.0% | |
| GGTACTGTGGATGAGGTTTG+GGG | + | chr1.1:33305895-33305914 | MS.gene037969:intron | 50.0% | |
| GTACTGTGGATGAGGTTTGG+GGG | + | chr1.1:33305896-33305915 | MS.gene037969:intron | 50.0% | |
| TACTGTGGATGAGGTTTGGG+GGG | + | chr1.1:33305897-33305916 | MS.gene037969:intron | 50.0% | |
| TCCTGCTTGCGAATACCTCT+GGG | - | chr1.1:33306377-33306396 | None:intergenic | 50.0% | |
| TCGGTACTGTGGATGAGGTT+TGG | + | chr1.1:33305893-33305912 | MS.gene037969:intron | 50.0% | |
| TCTCAGACTGCTTTCAGGCA+CGG | - | chr1.1:33307047-33307066 | None:intergenic | 50.0% | |
| TGAAGATGGGGAGAGAGAGA+TGG | + | chr1.1:33305929-33305948 | MS.gene037969:intron | 50.0% | |
| TGCCTCCAATCCACTACAAG+TGG | + | chr1.1:33307019-33307038 | MS.gene037969:intron | 50.0% | |
| TGGGGAGAGAGAGATGGAAT+GGG | + | chr1.1:33305935-33305954 | MS.gene037969:intron | 50.0% | |
| TGGTCCCAAAATCTGGGTTG+GGG | + | chr1.1:33306146-33306165 | MS.gene037969:intron | 50.0% | |
| ! | ATCTCAGACCTTTGGAGGGA+GGG | + | chr1.1:33304661-33304680 | MS.gene037969:CDS | 50.0% |
| ! | CAACACCCCAACCCAGATTT+TGG | - | chr1.1:33306154-33306173 | None:intergenic | 50.0% |
| ! | GGATCCGTTACTGACTGCTT+TGG | - | chr1.1:33306610-33306629 | None:intergenic | 50.0% |
| ! | GTCACTGCTTGTGGATTGTG+AGG | - | chr1.1:33304121-33304140 | None:intergenic | 50.0% |
| !! | CCTGGTAATGCAGGTTTTGG+AGG | - | chr1.1:33307220-33307239 | None:intergenic | 50.0% |
| !! | CGGATCCACTTGTAGTGGAT+TGG | - | chr1.1:33307027-33307046 | None:intergenic | 50.0% |
| ACAGCTGCACAGAGATGGAG+AGG | - | chr1.1:33305847-33305866 | None:intergenic | 55.0% | |
| AGAGAGATGGAATGGGGGGT+AGG | + | chr1.1:33305942-33305961 | MS.gene037969:intron | 55.0% | |
| AGGCACGGATCCACTTGTAG+TGG | - | chr1.1:33307032-33307051 | None:intergenic | 55.0% | |
| AGTACTCCAGGGGAGAGATG+CGG | + | chr1.1:33307499-33307518 | MS.gene037969:intron | 55.0% | |
| CACAAGCAGTGACCTTGGCA+TGG | + | chr1.1:33304128-33304147 | MS.gene037969:CDS | 55.0% | |
| CATGCCAAGGTCACTGCTTG+TGG | - | chr1.1:33304130-33304149 | None:intergenic | 55.0% | |
| CCTGCTTGCGAATACCTCTG+GGG | - | chr1.1:33306376-33306395 | None:intergenic | 55.0% | |
| CGTTGGAATCCTCTACCGGA+AGG | - | chr1.1:33307283-33307302 | None:intergenic | 55.0% | |
| GAAAGGGTCTTCAGTTGGCG+TGG | - | chr1.1:33307106-33307125 | None:intergenic | 55.0% | |
| GGAGAGAGAGATGGAATGGG+GGG | + | chr1.1:33305938-33305957 | MS.gene037969:intron | 55.0% | |
| GGGAGAGAGAGATGGAATGG+GGG | + | chr1.1:33305937-33305956 | MS.gene037969:intron | 55.0% | |
| GGGGAGAGAGAGATGGAATG+GGG | + | chr1.1:33305936-33305955 | MS.gene037969:intron | 55.0% | |
| ! | CATCTCAGACCTTTGGAGGG+AGG | + | chr1.1:33304660-33304679 | MS.gene037969:CDS | 55.0% |
| !! | GGGGTTTTTAGGCAGCGGAT+CGG | - | chr1.1:33306357-33306376 | None:intergenic | 55.0% |
| !!! | CCTCTGGGGTTTTTAGGCAG+CGG | - | chr1.1:33306362-33306381 | None:intergenic | 55.0% |
| AGTACTCCGCATCTCTCCCC+TGG | - | chr1.1:33307508-33307527 | None:intergenic | 60.0% | |
| CCGCTGCCTAAAAACCCCAG+AGG | + | chr1.1:33306359-33306378 | MS.gene037969:intron | 60.0% | |
| GCATCTCTCCCCTGGAGTAC+TGG | - | chr1.1:33307500-33307519 | None:intergenic | 60.0% | |
| !! | CCCCAGAGGTATTCGCAAGC+AGG | + | chr1.1:33306373-33306392 | MS.gene037969:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 33303961 | 33307669 | 33303961 | ID=MS.gene037969 |
| chr1.1 | mRNA | 33303961 | 33307669 | 33303961 | ID=MS.gene037969.t1;Parent=MS.gene037969 |
| chr1.1 | exon | 33303961 | 33304251 | 33303961 | ID=MS.gene037969.t1.exon1;Parent=MS.gene037969.t1 |
| chr1.1 | CDS | 33303961 | 33304251 | 33303961 | ID=cds.MS.gene037969.t1;Parent=MS.gene037969.t1 |
| chr1.1 | exon | 33304344 | 33304706 | 33304344 | ID=MS.gene037969.t1.exon2;Parent=MS.gene037969.t1 |
| chr1.1 | CDS | 33304344 | 33304706 | 33304344 | ID=cds.MS.gene037969.t1;Parent=MS.gene037969.t1 |
| chr1.1 | exon | 33307574 | 33307669 | 33307574 | ID=MS.gene037969.t1.exon3;Parent=MS.gene037969.t1 |
| chr1.1 | CDS | 33307574 | 33307669 | 33307574 | ID=cds.MS.gene037969.t1;Parent=MS.gene037969.t1 |
| Gene Sequence |
| Protein sequence |
