Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037978.t1 | XP_013468340.1 | 80.2 | 897 | 6 | 1 | 1 | 725 | 1 | 897 | 0.00E+00 | 1396.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037978.t1 | F4IXE7 | 29.4 | 412 | 230 | 12 | 323 | 719 | 656 | 1021 | 4.8e-41 | 171.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037978.t1 | G7ZZK5 | 80.2 | 897 | 6 | 1 | 1 | 725 | 1 | 897 | 0.0e+00 | 1396.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene037978.t1 | TR | PHD |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037978.t1 | MTR_1g068930 | 99.352 | 617 | 4 | 0 | 109 | 725 | 281 | 897 | 0.0 | 1293 |
MS.gene037978.t1 | MTR_1g068930 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 9.44e-60 | 217 |
MS.gene037978.t1 | MTR_1g068930 | 93.355 | 617 | 4 | 1 | 109 | 725 | 281 | 860 | 0.0 | 1200 |
MS.gene037978.t1 | MTR_1g068930 | 98.165 | 109 | 2 | 0 | 1 | 109 | 1 | 109 | 7.69e-60 | 217 |
MS.gene037978.t1 | MTR_7g102610 | 53.846 | 468 | 194 | 6 | 274 | 721 | 482 | 947 | 3.89e-172 | 519 |
MS.gene037978.t1 | MTR_1g062330 | 51.860 | 457 | 199 | 5 | 285 | 721 | 347 | 802 | 4.08e-155 | 470 |
MS.gene037978.t1 | MTR_1g062330 | 49.296 | 355 | 160 | 4 | 285 | 620 | 347 | 700 | 3.38e-111 | 352 |
MS.gene037978.t1 | MTR_4g050090 | 39.315 | 496 | 259 | 12 | 258 | 722 | 158 | 642 | 9.25e-106 | 340 |
MS.gene037978.t1 | MTR_4g056990 | 37.500 | 520 | 258 | 11 | 227 | 719 | 138 | 617 | 2.52e-105 | 335 |
MS.gene037978.t1 | MTR_4g057290 | 41.995 | 431 | 219 | 8 | 286 | 691 | 86 | 510 | 3.42e-105 | 333 |
MS.gene037978.t1 | MTR_2g084425 | 36.042 | 480 | 250 | 10 | 110 | 541 | 259 | 729 | 3.61e-84 | 286 |
MS.gene037978.t1 | MTR_2g084425 | 52.500 | 120 | 47 | 4 | 541 | 651 | 830 | 948 | 1.83e-28 | 122 |
MS.gene037978.t1 | MTR_2g084425 | 36.042 | 480 | 250 | 10 | 110 | 541 | 259 | 729 | 5.55e-84 | 287 |
MS.gene037978.t1 | MTR_2g084425 | 54.211 | 190 | 77 | 4 | 541 | 721 | 830 | 1018 | 5.49e-55 | 204 |
MS.gene037978.t1 | MTR_1g103830 | 29.909 | 438 | 240 | 10 | 305 | 721 | 621 | 1012 | 7.09e-51 | 192 |
MS.gene037978.t1 | MTR_7g109640 | 29.710 | 414 | 232 | 13 | 323 | 720 | 417 | 787 | 2.00e-47 | 180 |
MS.gene037978.t1 | MTR_5g071340 | 28.235 | 425 | 240 | 10 | 315 | 721 | 707 | 1084 | 1.65e-46 | 179 |
MS.gene037978.t1 | MTR_2g078040 | 29.665 | 418 | 223 | 16 | 323 | 719 | 797 | 1164 | 4.11e-45 | 175 |
MS.gene037978.t1 | MTR_3g464550 | 27.556 | 450 | 262 | 10 | 273 | 703 | 587 | 991 | 3.96e-42 | 165 |
MS.gene037978.t1 | MTR_5g024500 | 25.745 | 470 | 240 | 15 | 306 | 720 | 4 | 419 | 8.88e-42 | 158 |
MS.gene037978.t1 | MTR_5g024390 | 25.319 | 470 | 242 | 15 | 306 | 720 | 4 | 419 | 2.26e-41 | 157 |
MS.gene037978.t1 | MTR_1g072130 | 28.235 | 425 | 242 | 13 | 316 | 721 | 840 | 1220 | 1.60e-40 | 161 |
MS.gene037978.t1 | MTR_3g103120 | 26.992 | 389 | 228 | 11 | 323 | 695 | 459 | 807 | 3.37e-37 | 149 |
MS.gene037978.t1 | MTR_3g103110 | 26.957 | 345 | 191 | 10 | 379 | 711 | 491 | 786 | 1.13e-33 | 138 |
MS.gene037978.t1 | MTR_1g067750 | 50.000 | 98 | 49 | 0 | 110 | 207 | 429 | 526 | 1.25e-27 | 118 |
MS.gene037978.t1 | MTR_7g095140 | 25.779 | 353 | 194 | 12 | 381 | 725 | 13 | 305 | 5.34e-27 | 114 |
MS.gene037978.t1 | MTR_2g084345 | 55.056 | 89 | 40 | 0 | 281 | 369 | 40 | 128 | 6.86e-27 | 112 |
MS.gene037978.t1 | MTR_4g063150 | 40.876 | 137 | 76 | 1 | 76 | 207 | 306 | 442 | 1.03e-26 | 114 |
MS.gene037978.t1 | MTR_1g067750 | 50.549 | 91 | 45 | 0 | 110 | 200 | 420 | 510 | 2.84e-25 | 110 |
MS.gene037978.t1 | MTR_4g099530 | 22.622 | 473 | 264 | 16 | 268 | 711 | 89 | 488 | 5.42e-25 | 110 |
MS.gene037978.t1 | MTR_7g023750 | 47.191 | 89 | 47 | 0 | 111 | 199 | 387 | 475 | 7.84e-23 | 103 |
MS.gene037978.t1 | MTR_7g023750 | 47.191 | 89 | 47 | 0 | 111 | 199 | 430 | 518 | 1.01e-22 | 103 |
MS.gene037978.t1 | MTR_7g023750 | 47.191 | 89 | 47 | 0 | 111 | 199 | 433 | 521 | 1.04e-22 | 103 |
MS.gene037978.t1 | MTR_3g103160 | 26.984 | 189 | 86 | 6 | 322 | 486 | 121 | 281 | 7.27e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037978.t1 | AT2G37520 | 62.773 | 642 | 221 | 8 | 91 | 721 | 181 | 815 | 0.0 | 840 |
MS.gene037978.t1 | AT3G53680 | 60.095 | 629 | 227 | 6 | 110 | 721 | 210 | 831 | 0.0 | 782 |
MS.gene037978.t1 | AT3G53680 | 60.159 | 630 | 227 | 6 | 110 | 721 | 210 | 833 | 0.0 | 782 |
MS.gene037978.t1 | AT2G36720 | 49.673 | 459 | 210 | 5 | 285 | 723 | 518 | 975 | 3.99e-152 | 468 |
MS.gene037978.t1 | AT2G36720 | 49.673 | 459 | 210 | 5 | 285 | 723 | 518 | 975 | 3.99e-152 | 468 |
MS.gene037978.t1 | AT2G27980 | 36.682 | 657 | 364 | 8 | 111 | 723 | 411 | 1059 | 4.06e-140 | 439 |
MS.gene037978.t1 | AT4G14920 | 27.854 | 438 | 236 | 12 | 311 | 723 | 603 | 985 | 1.19e-48 | 186 |
MS.gene037978.t1 | AT4G14920 | 27.854 | 438 | 236 | 12 | 311 | 723 | 603 | 985 | 1.19e-48 | 186 |
MS.gene037978.t1 | AT4G14920 | 27.854 | 438 | 236 | 12 | 311 | 723 | 603 | 985 | 1.19e-48 | 186 |
MS.gene037978.t1 | AT5G58610 | 30.024 | 413 | 235 | 10 | 324 | 721 | 404 | 777 | 8.03e-46 | 176 |
MS.gene037978.t1 | AT5G58610 | 30.024 | 413 | 235 | 10 | 324 | 721 | 635 | 1008 | 1.60e-45 | 176 |
MS.gene037978.t1 | AT5G58610 | 30.266 | 413 | 234 | 11 | 324 | 721 | 626 | 999 | 1.64e-45 | 176 |
MS.gene037978.t1 | AT5G58610 | 30.266 | 413 | 234 | 11 | 324 | 721 | 626 | 999 | 1.87e-45 | 176 |
MS.gene037978.t1 | AT5G58610 | 30.266 | 413 | 234 | 11 | 324 | 721 | 635 | 1008 | 2.14e-45 | 175 |
MS.gene037978.t1 | AT5G58610 | 30.266 | 413 | 234 | 11 | 324 | 721 | 635 | 1008 | 2.14e-45 | 175 |
MS.gene037978.t1 | AT3G14980 | 29.384 | 422 | 231 | 13 | 318 | 721 | 606 | 978 | 5.40e-44 | 171 |
MS.gene037978.t1 | AT3G14980 | 29.384 | 422 | 231 | 13 | 318 | 721 | 651 | 1023 | 7.29e-44 | 171 |
MS.gene037978.t1 | AT3G14980 | 29.384 | 422 | 231 | 13 | 318 | 721 | 651 | 1023 | 7.29e-44 | 171 |
MS.gene037978.t1 | AT3G14980 | 29.384 | 422 | 231 | 13 | 318 | 721 | 651 | 1023 | 7.29e-44 | 171 |
MS.gene037978.t1 | AT3G14980 | 29.117 | 419 | 236 | 12 | 318 | 721 | 651 | 1023 | 1.01e-43 | 170 |
MS.gene037978.t1 | AT1G05380 | 29.691 | 421 | 236 | 10 | 315 | 719 | 547 | 923 | 2.64e-42 | 166 |
MS.gene037978.t1 | AT1G05380 | 29.691 | 421 | 236 | 10 | 315 | 719 | 547 | 923 | 2.64e-42 | 166 |
MS.gene037978.t1 | AT1G05380 | 29.691 | 421 | 236 | 10 | 315 | 719 | 547 | 923 | 2.64e-42 | 166 |
MS.gene037978.t1 | AT5G58610 | 29.298 | 413 | 212 | 12 | 324 | 721 | 626 | 973 | 7.00e-40 | 158 |
MS.gene037978.t1 | AT5G58610 | 29.298 | 413 | 212 | 12 | 324 | 721 | 626 | 973 | 9.02e-40 | 158 |
MS.gene037978.t1 | AT5G36740 | 28.605 | 423 | 237 | 13 | 315 | 719 | 572 | 947 | 1.62e-39 | 157 |
MS.gene037978.t1 | AT5G36740 | 28.605 | 423 | 237 | 13 | 315 | 719 | 572 | 947 | 1.62e-39 | 157 |
MS.gene037978.t1 | AT5G36740 | 27.650 | 434 | 241 | 14 | 315 | 721 | 419 | 806 | 2.88e-37 | 150 |
MS.gene037978.t1 | AT5G58610 | 29.444 | 360 | 201 | 10 | 324 | 668 | 635 | 956 | 1.44e-36 | 148 |
MS.gene037978.t1 | AT5G58610 | 29.444 | 360 | 201 | 10 | 324 | 668 | 626 | 947 | 2.03e-36 | 147 |
MS.gene037978.t1 | AT5G36670 | 26.879 | 439 | 238 | 17 | 315 | 719 | 572 | 961 | 6.04e-31 | 130 |
MS.gene037978.t1 | AT5G36670 | 26.879 | 439 | 238 | 17 | 315 | 719 | 572 | 961 | 6.04e-31 | 130 |
MS.gene037978.t1 | AT5G63900 | 26.970 | 330 | 170 | 11 | 383 | 702 | 257 | 525 | 1.01e-30 | 128 |
MS.gene037978.t1 | AT5G36740 | 27.596 | 366 | 201 | 13 | 315 | 662 | 572 | 891 | 4.98e-30 | 127 |
MS.gene037978.t1 | AT5G36740 | 27.596 | 366 | 201 | 13 | 315 | 662 | 572 | 891 | 4.98e-30 | 127 |
MS.gene037978.t1 | AT5G36670 | 27.596 | 366 | 201 | 13 | 315 | 662 | 572 | 891 | 4.98e-30 | 127 |
MS.gene037978.t1 | AT5G36670 | 26.000 | 450 | 242 | 18 | 315 | 721 | 419 | 820 | 5.36e-29 | 124 |
MS.gene037978.t1 | AT5G36670 | 26.116 | 448 | 240 | 18 | 315 | 719 | 572 | 971 | 8.79e-29 | 124 |
MS.gene037978.t1 | AT5G59830 | 50.000 | 98 | 49 | 0 | 110 | 207 | 317 | 414 | 8.06e-28 | 117 |
MS.gene037978.t1 | AT5G59830 | 50.000 | 98 | 49 | 0 | 110 | 207 | 317 | 414 | 8.06e-28 | 117 |
MS.gene037978.t1 | AT5G59830 | 50.000 | 98 | 49 | 0 | 110 | 207 | 317 | 414 | 8.06e-28 | 117 |
MS.gene037978.t1 | AT5G58610 | 29.193 | 322 | 175 | 10 | 324 | 630 | 626 | 909 | 1.67e-27 | 119 |
MS.gene037978.t1 | AT3G14980 | 26.444 | 329 | 182 | 11 | 318 | 631 | 651 | 934 | 7.12e-25 | 111 |
MS.gene037978.t1 | AT5G13660 | 44.715 | 123 | 61 | 1 | 84 | 199 | 394 | 516 | 1.68e-24 | 108 |
MS.gene037978.t1 | AT5G13660 | 52.809 | 89 | 42 | 0 | 111 | 199 | 427 | 515 | 3.13e-24 | 107 |
Find 178 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAGGAATATGTGATTATT+TGG | 0.150813 | 1.3:+48097853 | None:intergenic |
TTGTGCAGGCGAAATATTTC+TGG | 0.184888 | 1.3:-48090535 | MS.gene037978:intron |
CTGATTCCTGTTATGGTATA+TGG | 0.204303 | 1.3:-48091193 | MS.gene037978:CDS |
GTTGAGCTCGATGGGATTAT+TGG | 0.243862 | 1.3:-48098057 | MS.gene037978:CDS |
TCATGTATAATGCTATAAAT+TGG | 0.250757 | 1.3:+48097820 | None:intergenic |
AATCACATATTCCTAGAAAA+TGG | 0.255410 | 1.3:-48097847 | MS.gene037978:CDS |
TAGTATCTGCCGGGCTTCTT+AGG | 0.257711 | 1.3:-48090379 | MS.gene037978:CDS |
TCCATTTGGACTAAGAAATT+AGG | 0.275286 | 1.3:-48090055 | MS.gene037978:CDS |
AATATTTCTGGCCAAGAATT+CGG | 0.299340 | 1.3:-48090523 | MS.gene037978:CDS |
CTGCACCTCTTTAAGATGTT+TGG | 0.299842 | 1.3:+48089815 | None:intergenic |
CATCCACCCACTTCATATTC+TGG | 0.300717 | 1.3:+48092982 | None:intergenic |
ATATTTCTGGCCAAGAATTC+GGG | 0.311304 | 1.3:-48090522 | MS.gene037978:CDS |
GAACCTTCTTGCTGCTTTGT+AGG | 0.312071 | 1.3:+48096577 | None:intergenic |
TATCAACGAGGGATCCTTCC+AGG | 0.341212 | 1.3:-48097737 | MS.gene037978:CDS |
ATTTCAATTGCAGCCTGCTT+GGG | 0.355527 | 1.3:-48093117 | MS.gene037978:intron |
TATTTCAATTGCAGCCTGCT+TGG | 0.361264 | 1.3:-48093118 | MS.gene037978:intron |
GCCTAATTTCTTAGTCCAAA+TGG | 0.376041 | 1.3:+48090054 | None:intergenic |
ACGAGGGATCCTTCCAGGTT+TGG | 0.376818 | 1.3:-48097732 | MS.gene037978:CDS |
CAGGGGATGCAGAGTCCATT+TGG | 0.382960 | 1.3:-48090069 | MS.gene037978:CDS |
TGGGTGGATGCGTTGTTTGC+AGG | 0.387332 | 1.3:-48092969 | MS.gene037978:intron |
GATCCCATCGTTGCAATATC+TGG | 0.389667 | 1.3:-48091223 | MS.gene037978:CDS |
GCTTACCCATATACCATAAC+AGG | 0.391501 | 1.3:+48091187 | None:intergenic |
TGTTCTGTTGCAGAAACATT+TGG | 0.398769 | 1.3:+48098788 | None:intergenic |
GTATCATGTTGGTTGCTTGC+GGG | 0.403484 | 1.3:-48092395 | MS.gene037978:CDS |
CTCATCTGGCGTGCTGTTTG+TGG | 0.404835 | 1.3:+48097786 | None:intergenic |
AACTACTCACGGTTGACGTC+TGG | 0.405856 | 1.3:+48093693 | None:intergenic |
GACTCTGCATCCCCTGCAGC+AGG | 0.410293 | 1.3:+48090076 | None:intergenic |
AAGCTGGTGCTCCCTGCTGC+AGG | 0.415428 | 1.3:-48090088 | MS.gene037978:CDS |
TCGTGACCTGATTCCTGTTA+TGG | 0.418037 | 1.3:-48091200 | MS.gene037978:CDS |
CCTTGTCGGAACTAATAATC+AGG | 0.420091 | 1.3:-48092161 | MS.gene037978:CDS |
CTGCAGAACTCAGTTTCTGC+TGG | 0.425684 | 1.3:-48092204 | MS.gene037978:CDS |
GTTGGTTGCTTGCGGGACAT+TGG | 0.430834 | 1.3:-48092388 | MS.gene037978:CDS |
ACATTCTTTATAACCTCATC+TGG | 0.434195 | 1.3:+48097772 | None:intergenic |
AGTTCTATTGTAGTATCTGC+CGG | 0.436363 | 1.3:-48090389 | MS.gene037978:CDS |
AACAGTAATAATTTGTGATC+AGG | 0.437855 | 1.3:-48092512 | MS.gene037978:intron |
CAATTCCAACCTTGATTCCT+CGG | 0.442972 | 1.3:+48098919 | None:intergenic |
CGTGTCAACCGTATCATGAT+TGG | 0.445167 | 1.3:+48093018 | None:intergenic |
TTCTTTGCAATGGATGTCCT+AGG | 0.446094 | 1.3:-48093473 | MS.gene037978:CDS |
GTTTCCACTCATCAGCTGTC+TGG | 0.451039 | 1.3:+48094453 | None:intergenic |
TACCATACCATCTTCCTTGT+CGG | 0.451679 | 1.3:-48092175 | MS.gene037978:CDS |
TTGGTTGCTTGCGGGACATT+GGG | 0.451865 | 1.3:-48092387 | MS.gene037978:CDS |
TTCTCTAAATGTAGAAAAGC+TGG | 0.453959 | 1.3:-48090104 | MS.gene037978:CDS |
AAATACAGCACAAAGTATAC+TGG | 0.455013 | 1.3:-48096543 | MS.gene037978:CDS |
AATTGTCACCTTTCCAAACC+TGG | 0.456107 | 1.3:+48097719 | None:intergenic |
CATATACCATAACAGGAATC+AGG | 0.457604 | 1.3:+48091194 | None:intergenic |
AGCAGTTTGTGTGCAAGAAT+TGG | 0.459554 | 1.3:-48098963 | MS.gene037978:CDS |
GTTTACCTGTTGTATGTATG+AGG | 0.461715 | 1.3:+48096516 | None:intergenic |
GGAACTGACATCTACTGGTT+TGG | 0.462522 | 1.3:-48098696 | MS.gene037978:CDS |
ACTCACGGTATCATGAGAAC+TGG | 0.465826 | 1.3:+48098667 | None:intergenic |
TCACAAGATGAGTGAAGATC+AGG | 0.472645 | 1.3:-48090029 | MS.gene037978:intron |
TAAGCCAACTCGGCACCATC+TGG | 0.474427 | 1.3:+48094020 | None:intergenic |
ATCAAATGATGAATTGCGTT+CGG | 0.474499 | 1.3:-48098822 | MS.gene037978:CDS |
ACAACAAAACCACTTATCCT+TGG | 0.476811 | 1.3:+48092254 | None:intergenic |
TGATTCCTGTTATGGTATAT+GGG | 0.477661 | 1.3:-48091192 | MS.gene037978:intron |
GCTCTCTACTTGTAGCTACC+AGG | 0.479856 | 1.3:+48090327 | None:intergenic |
GGAGGTTACAAACAAGGAAA+TGG | 0.483140 | 1.3:-48093876 | MS.gene037978:CDS |
CAACAAAACCACTTATCCTT+GGG | 0.483162 | 1.3:+48092255 | None:intergenic |
CGTCACTATCTCCCGTAGTA+AGG | 0.483399 | 1.3:+48093532 | None:intergenic |
ATAGCTCTCTCTTTAGCAAA+TGG | 0.484963 | 1.3:-48093561 | MS.gene037978:CDS |
TGTGTGCAAGAATTGGTTGA+TGG | 0.485091 | 1.3:-48098956 | MS.gene037978:CDS |
AACATCAGTGCTGGAAAAGA+TGG | 0.491255 | 1.3:-48089775 | MS.gene037978:CDS |
CGGAAAATACCGAGGAATCA+AGG | 0.492209 | 1.3:-48098928 | MS.gene037978:CDS |
GCACCATCTGGTAGGCCATT+AGG | 0.495313 | 1.3:+48094032 | None:intergenic |
CTTCAACAAAACATCAGTGC+TGG | 0.496640 | 1.3:-48089784 | MS.gene037978:CDS |
GATCACAAATTATTACTGTT+CGG | 0.496937 | 1.3:+48092515 | None:intergenic |
GTCTGGCCGCCATTCCAGCA+TGG | 0.498328 | 1.3:+48093710 | None:intergenic |
ATTAGTTCCGACAAGGAAGA+TGG | 0.499097 | 1.3:+48092168 | None:intergenic |
CGCCACATATATGCTTCCAA+TGG | 0.499581 | 1.3:-48093600 | MS.gene037978:CDS |
TCGCAGTTTGAAGCCCATGC+TGG | 0.501139 | 1.3:-48093724 | MS.gene037978:CDS |
ATGGCTAACATTCTCAGATT+CGG | 0.501313 | 1.3:+48098730 | None:intergenic |
TGCCACTTAAAATTCTCCAT+TGG | 0.501723 | 1.3:+48092091 | None:intergenic |
ATTATTAGGTTGAGCTCGAT+GGG | 0.503113 | 1.3:-48098065 | MS.gene037978:intron |
AGACAATGCCAACCACTCTC+TGG | 0.504882 | 1.3:+48093081 | None:intergenic |
TCTTTGCAATGGATGTCCTA+GGG | 0.507931 | 1.3:-48093472 | MS.gene037978:CDS |
GCATGCCTCATACATACAAC+AGG | 0.508258 | 1.3:-48096521 | MS.gene037978:intron |
AGGAGCTTCCCAAGGATAAG+TGG | 0.511538 | 1.3:-48092263 | MS.gene037978:CDS |
CATTCTCAGATTCGGTCGGT+TGG | 0.512953 | 1.3:+48098738 | None:intergenic |
CTGTGGTTGTTGTGATATAG+AGG | 0.515703 | 1.3:-48093847 | MS.gene037978:intron |
GCATGGGCTTCAAACTGCGA+AGG | 0.518290 | 1.3:+48093727 | None:intergenic |
GTTTGAAGCCCATGCTGGAA+TGG | 0.519222 | 1.3:-48093719 | MS.gene037978:CDS |
CTGATGGTTGCACTAAGAAA+AGG | 0.521651 | 1.3:-48094221 | MS.gene037978:intron |
AGCATGCTGCTCAAACTCAT+AGG | 0.521651 | 1.3:+48097894 | None:intergenic |
AATTATTAGGTTGAGCTCGA+TGG | 0.522687 | 1.3:-48098066 | MS.gene037978:intron |
AGTATCATGTTGGTTGCTTG+CGG | 0.523548 | 1.3:-48092396 | MS.gene037978:CDS |
GGAGATTTGATTCTTTGCAA+TGG | 0.524987 | 1.3:-48093483 | MS.gene037978:CDS |
TCTGGCCGCCATTCCAGCAT+GGG | 0.525191 | 1.3:+48093711 | None:intergenic |
ATCATGAAGTGTCAATCCAT+TGG | 0.529107 | 1.3:+48093584 | None:intergenic |
CAATATTGCTGAGCTTCCCC+TGG | 0.530864 | 1.3:-48090345 | MS.gene037978:CDS |
TAATCAGGAAGCATGAGGAC+AGG | 0.533029 | 1.3:-48092146 | MS.gene037978:CDS |
ATGTTAGCCATGCAGAGTGT+GGG | 0.533335 | 1.3:-48098718 | MS.gene037978:CDS |
TCGCACACGCGAAGATGAGA+AGG | 0.534198 | 1.3:+48094505 | None:intergenic |
CGCTGTTCTCTTGCATAGAG+AGG | 0.535338 | 1.3:-48090135 | MS.gene037978:CDS |
AATCAGGAAGCATGAGGACA+GGG | 0.536694 | 1.3:-48092145 | MS.gene037978:CDS |
TTCCGACAAGGAAGATGGTA+TGG | 0.538378 | 1.3:+48092173 | None:intergenic |
TATGAGTTTGAGCAGCATGC+TGG | 0.538811 | 1.3:-48097892 | MS.gene037978:CDS |
AGCTGGTGCTCCCTGCTGCA+GGG | 0.540416 | 1.3:-48090087 | MS.gene037978:CDS |
TGTGGGGAACTGACATCTAC+TGG | 0.541241 | 1.3:-48098701 | MS.gene037978:CDS |
GACAGGGGATTATGTACGTA+TGG | 0.542273 | 1.3:-48092129 | MS.gene037978:CDS |
GTTAACCAAACATCTTAAAG+AGG | 0.550069 | 1.3:-48089820 | MS.gene037978:CDS |
CCTAGCACCTCTTTCATCAC+CGG | 0.553179 | 1.3:+48093041 | None:intergenic |
GTTCTATTGTAGTATCTGCC+GGG | 0.553325 | 1.3:-48090388 | MS.gene037978:CDS |
GCTGGTGCTCCCTGCTGCAG+GGG | 0.553471 | 1.3:-48090086 | MS.gene037978:CDS |
TCAGGGACAACGATTTGCAC+AGG | 0.553644 | 1.3:-48094067 | MS.gene037978:intron |
CCTACCAGATGGTGCCGAGT+TGG | 0.554670 | 1.3:-48094024 | MS.gene037978:CDS |
ATGCCTAATGGCCTACCAGA+TGG | 0.557585 | 1.3:-48094035 | MS.gene037978:CDS |
AAATGGTCAAAACCTTACTA+CGG | 0.559162 | 1.3:-48093544 | MS.gene037978:CDS |
GACGATATGTGTGCAGTATG+TGG | 0.562409 | 1.3:-48093513 | MS.gene037978:CDS |
GGACATTGGGCTATGTGAGT+TGG | 0.565407 | 1.3:-48092374 | MS.gene037978:CDS |
AAATACCGAGGAATCAAGGT+TGG | 0.565993 | 1.3:-48098924 | MS.gene037978:CDS |
GGCTTACTATGTCAAAGGAC+AGG | 0.566342 | 1.3:-48094003 | MS.gene037978:intron |
TACACTGTGTAAACCCAAGC+AGG | 0.566345 | 1.3:+48093104 | None:intergenic |
CTAAATTGTGAAGATAATAC+CGG | 0.566713 | 1.3:-48093060 | MS.gene037978:CDS |
GGATCCTTCCAGGTTTGGAA+AGG | 0.568977 | 1.3:-48097727 | MS.gene037978:intron |
CAATCATGATACGGTTGACA+CGG | 0.569872 | 1.3:-48093017 | MS.gene037978:CDS |
GAGACATGAATGATATCCAA+TGG | 0.570210 | 1.3:-48092107 | MS.gene037978:CDS |
GAGGTTATAAAGAATGTGGC+TGG | 0.571005 | 1.3:-48097766 | MS.gene037978:CDS |
GAGTAGTAAGTGTAGGTGCT+TGG | 0.573254 | 1.3:+48094267 | None:intergenic |
TTGGCTGCTAATATCATGAA+AGG | 0.573840 | 1.3:+48098757 | None:intergenic |
AGTGCTGGAAAAGATGGTGC+AGG | 0.576023 | 1.3:-48089769 | MS.gene037978:CDS |
CTCTCTACTTGTAGCTACCA+GGG | 0.577610 | 1.3:+48090328 | None:intergenic |
AATGGTCAAAACCTTACTAC+GGG | 0.583818 | 1.3:-48093543 | MS.gene037978:CDS |
CTCGATGGGATTATTGGTGA+TGG | 0.584397 | 1.3:-48098051 | MS.gene037978:CDS |
CCTGATTATTAGTTCCGACA+AGG | 0.584730 | 1.3:+48092161 | None:intergenic |
GATAATACCGGTGATGAAAG+AGG | 0.586090 | 1.3:-48093048 | MS.gene037978:CDS |
GTCACCTTTCCAAACCTGGA+AGG | 0.586888 | 1.3:+48097723 | None:intergenic |
ACAGTGTACCAGAGAGTGGT+TGG | 0.587119 | 1.3:-48093089 | MS.gene037978:CDS |
TCAGTTCCCCACACTCTGCA+TGG | 0.587821 | 1.3:+48098711 | None:intergenic |
CGACCAGATATTGCAACGAT+GGG | 0.591304 | 1.3:+48091220 | None:intergenic |
TCTCCTACAAAGCAGCAAGA+AGG | 0.591457 | 1.3:-48096580 | MS.gene037978:CDS |
GTGCTAGGCCAATCATGATA+CGG | 0.593336 | 1.3:-48093026 | MS.gene037978:CDS |
CGACTGCAATCGAATATATG+TGG | 0.593667 | 1.3:-48092229 | MS.gene037978:CDS |
CATGGGCTTCAAACTGCGAA+GGG | 0.593763 | 1.3:+48093728 | None:intergenic |
ATGTGTGCAGTATGTGGAGA+TGG | 0.595554 | 1.3:-48093507 | MS.gene037978:CDS |
CAAGGAAATGGTATAGTCTG+TGG | 0.597162 | 1.3:-48093864 | MS.gene037978:CDS |
AGAATTGGTTGATGGAAAGA+CGG | 0.598733 | 1.3:-48098948 | MS.gene037978:CDS |
AGCACCTACACTTACTACTC+AGG | 0.600275 | 1.3:-48094264 | MS.gene037978:CDS |
ATCCATTGGAAGCATATATG+TGG | 0.600631 | 1.3:+48093598 | None:intergenic |
TTTCAGTATCAGCAACACAT+TGG | 0.609213 | 1.3:+48098882 | None:intergenic |
TTTACTACAGGAGCTTCCCA+AGG | 0.613778 | 1.3:-48092271 | MS.gene037978:intron |
TGAAGCCCATGCTGGAATGG+CGG | 0.615089 | 1.3:-48093716 | MS.gene037978:CDS |
GAACCAGAATATGAAGTGGG+TGG | 0.615638 | 1.3:-48092985 | MS.gene037978:CDS |
ACGACCAGATATTGCAACGA+TGG | 0.617395 | 1.3:+48091219 | None:intergenic |
TAAAGAACCAGAATATGAAG+TGG | 0.620957 | 1.3:-48092989 | MS.gene037978:CDS |
CCGCAGAAGAGAAGTGCTGA+TGG | 0.622167 | 1.3:-48094237 | MS.gene037978:CDS |
CTAACATTCTCAGATTCGGT+CGG | 0.622546 | 1.3:+48098734 | None:intergenic |
GAGTTGGCTTACTATGTCAA+AGG | 0.622870 | 1.3:-48094008 | MS.gene037978:CDS |
TATTTCTGGCCAAGAATTCG+GGG | 0.624320 | 1.3:-48090521 | MS.gene037978:CDS |
CACAAACAGCACGCCAGATG+AGG | 0.626750 | 1.3:-48097785 | MS.gene037978:CDS |
AATCATGATACGGTTGACAC+GGG | 0.627097 | 1.3:-48093016 | MS.gene037978:CDS |
TTACTTGGAGGTTACAAACA+AGG | 0.627097 | 1.3:-48093882 | MS.gene037978:CDS |
TCACCTGCATGAAAAGCCCT+AGG | 0.627515 | 1.3:+48093456 | None:intergenic |
TGTTAGCCATGCAGAGTGTG+GGG | 0.629545 | 1.3:-48098717 | MS.gene037978:CDS |
CCAACTCGGCACCATCTGGT+AGG | 0.631639 | 1.3:+48094024 | None:intergenic |
ACTCTGCATCCCCTGCAGCA+GGG | 0.632470 | 1.3:+48090077 | None:intergenic |
GCAGCAGCTCGTGAAAGTAA+CGG | 0.635905 | 1.3:+48092045 | None:intergenic |
ACTAATAATCAGGAAGCATG+AGG | 0.636804 | 1.3:-48092151 | MS.gene037978:CDS |
AAAGAACCAGAATATGAAGT+GGG | 0.639564 | 1.3:-48092988 | MS.gene037978:CDS |
AATGTTAGCCATGCAGAGTG+TGG | 0.640010 | 1.3:-48098719 | MS.gene037978:CDS |
TGTGCAGTATGTGGAGATGG+AGG | 0.641733 | 1.3:-48093504 | MS.gene037978:CDS |
GCTACAAGTAGAGAGCATCA+AGG | 0.644661 | 1.3:-48090320 | MS.gene037978:CDS |
AGATGAGGTTATAAAGAATG+TGG | 0.645405 | 1.3:-48097770 | MS.gene037978:CDS |
TATACCTGAGTAGTAAGTGT+AGG | 0.646579 | 1.3:+48094260 | None:intergenic |
GGGGAAGCTCAGCAATATTG+CGG | 0.647399 | 1.3:+48090348 | None:intergenic |
GATGGGATTATTGGTGATGG+TGG | 0.652514 | 1.3:-48098048 | MS.gene037978:CDS |
TGAACCAGACAGCTGATGAG+TGG | 0.653688 | 1.3:-48094457 | MS.gene037978:CDS |
TTACACAGTGTACCAGAGAG+TGG | 0.659593 | 1.3:-48093093 | MS.gene037978:CDS |
CCATCAGCACTTCTCTTCTG+CGG | 0.662514 | 1.3:+48094237 | None:intergenic |
TTTGACATAGTAAGCCAACT+CGG | 0.664130 | 1.3:+48094010 | None:intergenic |
CCGGTGATGAAAGAGGTGCT+AGG | 0.664182 | 1.3:-48093041 | MS.gene037978:CDS |
CATTGGAAGCATATATGTGG+CGG | 0.666351 | 1.3:+48093601 | None:intergenic |
ATTTCTGGCCAAGAATTCGG+GGG | 0.674461 | 1.3:-48090520 | MS.gene037978:CDS |
ATCAGGAAGCATGAGGACAG+GGG | 0.674473 | 1.3:-48092144 | MS.gene037978:CDS |
GCTGGTTCATCTATCAACGA+GGG | 0.690296 | 1.3:-48097748 | MS.gene037978:CDS |
TCTCTACTTGTAGCTACCAG+GGG | 0.693635 | 1.3:+48090329 | None:intergenic |
TGTGAGAAGGAGTATCATGT+TGG | 0.706727 | 1.3:-48092406 | MS.gene037978:CDS |
TGGAAAGACGGAAAATACCG+AGG | 0.709142 | 1.3:-48098936 | MS.gene037978:CDS |
GGCTGGTTCATCTATCAACG+AGG | 0.715047 | 1.3:-48097749 | MS.gene037978:CDS |
GGTGATGGTGGATATCTGTG+TGG | 0.715376 | 1.3:-48098036 | MS.gene037978:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 48089758 | 48098996 | 48089758 | ID=MS.gene037978 |
chr1.3 | mRNA | 48089758 | 48098996 | 48089758 | ID=MS.gene037978.t1;Parent=MS.gene037978 |
chr1.3 | exon | 48098673 | 48098996 | 48098673 | ID=MS.gene037978.t1.exon1;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48098673 | 48098996 | 48098673 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48098011 | 48098079 | 48098011 | ID=MS.gene037978.t1.exon2;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48098011 | 48098079 | 48098011 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48097728 | 48097926 | 48097728 | ID=MS.gene037978.t1.exon3;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48097728 | 48097926 | 48097728 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48096522 | 48096606 | 48096522 | ID=MS.gene037978.t1.exon4;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48096522 | 48096606 | 48096522 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48094440 | 48094550 | 48094440 | ID=MS.gene037978.t1.exon5;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48094440 | 48094550 | 48094440 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48094222 | 48094290 | 48094222 | ID=MS.gene037978.t1.exon6;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48094222 | 48094290 | 48094222 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48094004 | 48094085 | 48094004 | ID=MS.gene037978.t1.exon7;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48094004 | 48094085 | 48094004 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48093848 | 48093907 | 48093848 | ID=MS.gene037978.t1.exon8;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48093848 | 48093907 | 48093848 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48093703 | 48093755 | 48093703 | ID=MS.gene037978.t1.exon9;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48093703 | 48093755 | 48093703 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48093460 | 48093626 | 48093460 | ID=MS.gene037978.t1.exon10;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48093460 | 48093626 | 48093460 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48092970 | 48093126 | 48092970 | ID=MS.gene037978.t1.exon11;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48092970 | 48093126 | 48092970 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48092513 | 48092570 | 48092513 | ID=MS.gene037978.t1.exon12;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48092513 | 48092570 | 48092513 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48092372 | 48092428 | 48092372 | ID=MS.gene037978.t1.exon13;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48092372 | 48092428 | 48092372 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48092035 | 48092283 | 48092035 | ID=MS.gene037978.t1.exon14;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48092035 | 48092283 | 48092035 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48091193 | 48091254 | 48091193 | ID=MS.gene037978.t1.exon15;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48091193 | 48091254 | 48091193 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48090493 | 48090549 | 48090493 | ID=MS.gene037978.t1.exon16;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48090493 | 48090549 | 48090493 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48090316 | 48090409 | 48090316 | ID=MS.gene037978.t1.exon17;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48090316 | 48090409 | 48090316 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48090030 | 48090170 | 48090030 | ID=MS.gene037978.t1.exon18;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48090030 | 48090170 | 48090030 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
chr1.3 | exon | 48089758 | 48089841 | 48089758 | ID=MS.gene037978.t1.exon19;Parent=MS.gene037978.t1 |
chr1.3 | CDS | 48089758 | 48089841 | 48089758 | ID=cds.MS.gene037978.t1;Parent=MS.gene037978.t1 |
Gene Sequence |
Protein sequence |