Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037979.t1 | XP_013468340.1 | 98.3 | 752 | 12 | 1 | 1 | 751 | 1 | 752 | 0.00E+00 | 1457.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037979.t1 | F4IXE7 | 28.0 | 211 | 106 | 6 | 494 | 692 | 656 | 832 | 2.4e-19 | 99.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037979.t1 | G7ZZK5 | 98.3 | 752 | 12 | 1 | 1 | 751 | 1 | 752 | 0.0e+00 | 1457.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene037979.t1 | TR | PHD |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037979.t1 | MTR_1g068930 | 98.005 | 752 | 14 | 1 | 1 | 751 | 1 | 752 | 0.0 | 1540 |
MS.gene037979.t1 | MTR_1g068930 | 93.085 | 752 | 14 | 2 | 1 | 751 | 1 | 715 | 0.0 | 1447 |
MS.gene037979.t1 | MTR_7g102610 | 48.765 | 324 | 146 | 4 | 445 | 750 | 482 | 803 | 4.22e-101 | 333 |
MS.gene037979.t1 | MTR_7g102610 | 28.492 | 358 | 220 | 11 | 27 | 364 | 19 | 360 | 8.37e-20 | 95.1 |
MS.gene037979.t1 | MTR_2g084425 | 36.452 | 513 | 264 | 11 | 253 | 712 | 226 | 729 | 5.19e-94 | 314 |
MS.gene037979.t1 | MTR_2g084425 | 36.452 | 513 | 264 | 11 | 253 | 712 | 226 | 729 | 1.55e-93 | 314 |
MS.gene037979.t1 | MTR_1g062330 | 46.965 | 313 | 147 | 3 | 456 | 750 | 347 | 658 | 3.31e-89 | 295 |
MS.gene037979.t1 | MTR_1g062330 | 46.965 | 313 | 147 | 3 | 456 | 750 | 347 | 658 | 1.29e-88 | 296 |
MS.gene037979.t1 | MTR_4g056990 | 34.933 | 375 | 185 | 8 | 398 | 750 | 138 | 475 | 3.02e-61 | 218 |
MS.gene037979.t1 | MTR_4g050090 | 36.254 | 331 | 174 | 8 | 429 | 733 | 158 | 477 | 3.92e-58 | 211 |
MS.gene037979.t1 | MTR_4g057290 | 36.278 | 317 | 173 | 6 | 457 | 750 | 86 | 396 | 8.23e-56 | 201 |
MS.gene037979.t1 | MTR_1g067750 | 51.449 | 138 | 67 | 0 | 241 | 378 | 389 | 526 | 1.17e-41 | 160 |
MS.gene037979.t1 | MTR_1g067750 | 53.125 | 128 | 60 | 0 | 241 | 368 | 380 | 507 | 3.88e-39 | 152 |
MS.gene037979.t1 | MTR_4g063150 | 45.324 | 139 | 75 | 1 | 240 | 378 | 305 | 442 | 9.08e-38 | 147 |
MS.gene037979.t1 | MTR_7g023750 | 48.485 | 132 | 68 | 0 | 239 | 370 | 344 | 475 | 8.72e-35 | 139 |
MS.gene037979.t1 | MTR_7g023750 | 48.485 | 132 | 68 | 0 | 239 | 370 | 390 | 521 | 1.46e-34 | 139 |
MS.gene037979.t1 | MTR_7g023750 | 48.485 | 132 | 68 | 0 | 239 | 370 | 387 | 518 | 1.49e-34 | 139 |
MS.gene037979.t1 | MTR_1g103830 | 31.004 | 229 | 113 | 4 | 476 | 689 | 621 | 819 | 6.73e-27 | 118 |
MS.gene037979.t1 | MTR_2g084345 | 55.056 | 89 | 40 | 0 | 452 | 540 | 40 | 128 | 7.31e-27 | 112 |
MS.gene037979.t1 | MTR_7g109640 | 30.288 | 208 | 103 | 6 | 494 | 689 | 417 | 594 | 8.07e-23 | 104 |
MS.gene037979.t1 | MTR_5g071340 | 28.270 | 237 | 123 | 5 | 486 | 707 | 707 | 911 | 1.29e-22 | 104 |
MS.gene037979.t1 | MTR_1g072130 | 31.797 | 217 | 106 | 7 | 487 | 689 | 840 | 1028 | 1.31e-21 | 101 |
MS.gene037979.t1 | MTR_2g078040 | 28.899 | 218 | 107 | 6 | 489 | 692 | 792 | 975 | 2.81e-21 | 100 |
MS.gene037979.t1 | MTR_3g464550 | 27.174 | 276 | 154 | 6 | 444 | 703 | 587 | 831 | 5.84e-21 | 99.0 |
MS.gene037979.t1 | MTR_5g024390 | 25.769 | 260 | 115 | 10 | 477 | 689 | 4 | 232 | 5.97e-20 | 93.6 |
MS.gene037979.t1 | MTR_5g024500 | 25.769 | 260 | 115 | 10 | 477 | 689 | 4 | 232 | 1.59e-19 | 92.4 |
MS.gene037979.t1 | MTR_2g084375 | 37.615 | 109 | 63 | 1 | 253 | 356 | 9 | 117 | 8.63e-17 | 81.6 |
MS.gene037979.t1 | MTR_2g084410 | 36.697 | 109 | 64 | 1 | 253 | 356 | 23 | 131 | 2.79e-16 | 80.5 |
MS.gene037979.t1 | MTR_3g103120 | 24.880 | 209 | 116 | 7 | 494 | 689 | 459 | 639 | 2.13e-15 | 80.9 |
MS.gene037979.t1 | MTR_1g067750 | 52.381 | 63 | 30 | 0 | 241 | 303 | 389 | 451 | 9.34e-13 | 71.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037979.t1 | AT2G37520 | 49.738 | 762 | 284 | 16 | 1 | 751 | 1 | 674 | 0.0 | 717 |
MS.gene037979.t1 | AT3G53680 | 46.770 | 774 | 307 | 17 | 1 | 751 | 1 | 692 | 0.0 | 650 |
MS.gene037979.t1 | AT3G53680 | 46.701 | 773 | 307 | 17 | 1 | 751 | 1 | 690 | 0.0 | 650 |
MS.gene037979.t1 | AT2G36720 | 35.294 | 578 | 300 | 11 | 246 | 750 | 253 | 829 | 5.14e-98 | 326 |
MS.gene037979.t1 | AT2G36720 | 35.294 | 578 | 300 | 11 | 246 | 750 | 253 | 829 | 5.14e-98 | 326 |
MS.gene037979.t1 | AT2G27980 | 31.826 | 553 | 320 | 9 | 246 | 750 | 371 | 914 | 3.18e-85 | 292 |
MS.gene037979.t1 | AT5G59830 | 49.275 | 138 | 69 | 1 | 241 | 378 | 278 | 414 | 1.57e-39 | 152 |
MS.gene037979.t1 | AT5G59830 | 49.275 | 138 | 69 | 1 | 241 | 378 | 278 | 414 | 1.57e-39 | 152 |
MS.gene037979.t1 | AT5G59830 | 49.275 | 138 | 69 | 1 | 241 | 378 | 278 | 414 | 1.57e-39 | 152 |
MS.gene037979.t1 | AT5G13660 | 49.296 | 142 | 72 | 0 | 229 | 370 | 374 | 515 | 1.30e-35 | 142 |
MS.gene037979.t1 | AT5G13660 | 48.951 | 143 | 72 | 1 | 229 | 370 | 374 | 516 | 3.82e-35 | 141 |
MS.gene037979.t1 | AT4G14920 | 27.542 | 236 | 113 | 6 | 482 | 695 | 603 | 802 | 1.24e-23 | 107 |
MS.gene037979.t1 | AT4G14920 | 27.542 | 236 | 113 | 6 | 482 | 695 | 603 | 802 | 1.24e-23 | 107 |
MS.gene037979.t1 | AT4G14920 | 27.542 | 236 | 113 | 6 | 482 | 695 | 603 | 802 | 1.34e-23 | 107 |
MS.gene037979.t1 | AT5G58610 | 28.631 | 241 | 125 | 6 | 495 | 721 | 404 | 611 | 1.02e-21 | 101 |
MS.gene037979.t1 | AT5G58610 | 28.631 | 241 | 125 | 6 | 495 | 721 | 635 | 842 | 1.06e-21 | 101 |
MS.gene037979.t1 | AT5G58610 | 28.631 | 241 | 125 | 6 | 495 | 721 | 635 | 842 | 1.22e-21 | 101 |
MS.gene037979.t1 | AT5G58610 | 28.631 | 241 | 125 | 6 | 495 | 721 | 635 | 842 | 1.22e-21 | 101 |
MS.gene037979.t1 | AT5G58610 | 28.631 | 241 | 125 | 6 | 495 | 721 | 635 | 842 | 1.27e-21 | 101 |
MS.gene037979.t1 | AT5G58610 | 28.631 | 241 | 125 | 6 | 495 | 721 | 626 | 833 | 1.33e-21 | 101 |
MS.gene037979.t1 | AT5G58610 | 28.631 | 241 | 125 | 6 | 495 | 721 | 626 | 833 | 1.35e-21 | 101 |
MS.gene037979.t1 | AT5G58610 | 28.631 | 241 | 125 | 6 | 495 | 721 | 626 | 833 | 1.39e-21 | 100 |
MS.gene037979.t1 | AT5G58610 | 29.707 | 239 | 125 | 7 | 495 | 721 | 626 | 833 | 1.59e-21 | 100 |
MS.gene037979.t1 | AT5G36670 | 28.870 | 239 | 126 | 7 | 486 | 712 | 572 | 778 | 5.08e-21 | 99.4 |
MS.gene037979.t1 | AT5G36670 | 28.870 | 239 | 126 | 7 | 486 | 712 | 572 | 778 | 5.08e-21 | 99.4 |
MS.gene037979.t1 | AT5G36740 | 28.870 | 239 | 126 | 7 | 486 | 712 | 572 | 778 | 5.22e-21 | 99.4 |
MS.gene037979.t1 | AT5G36740 | 28.870 | 239 | 126 | 7 | 486 | 712 | 572 | 778 | 5.22e-21 | 99.4 |
MS.gene037979.t1 | AT5G36740 | 28.870 | 239 | 126 | 7 | 486 | 712 | 572 | 778 | 5.50e-21 | 99.0 |
MS.gene037979.t1 | AT5G36740 | 28.870 | 239 | 126 | 7 | 486 | 712 | 572 | 778 | 5.50e-21 | 99.0 |
MS.gene037979.t1 | AT5G36670 | 28.870 | 239 | 126 | 7 | 486 | 712 | 572 | 778 | 5.50e-21 | 99.0 |
MS.gene037979.t1 | AT1G05380 | 30.415 | 217 | 107 | 5 | 486 | 689 | 547 | 732 | 1.87e-20 | 97.4 |
MS.gene037979.t1 | AT1G05380 | 30.415 | 217 | 107 | 5 | 486 | 689 | 547 | 732 | 1.87e-20 | 97.4 |
MS.gene037979.t1 | AT1G05380 | 30.415 | 217 | 107 | 5 | 486 | 689 | 547 | 732 | 1.87e-20 | 97.4 |
MS.gene037979.t1 | AT5G36670 | 40.164 | 122 | 60 | 3 | 486 | 595 | 572 | 692 | 2.85e-20 | 97.1 |
MS.gene037979.t1 | AT5G36740 | 40.164 | 122 | 60 | 3 | 486 | 595 | 419 | 539 | 3.85e-20 | 96.3 |
MS.gene037979.t1 | AT5G36670 | 40.164 | 122 | 60 | 3 | 486 | 595 | 419 | 539 | 4.30e-20 | 96.3 |
MS.gene037979.t1 | AT5G58610 | 30.846 | 201 | 95 | 5 | 495 | 681 | 626 | 796 | 1.12e-19 | 95.1 |
MS.gene037979.t1 | AT5G58610 | 30.846 | 201 | 95 | 5 | 495 | 681 | 626 | 796 | 1.33e-19 | 94.7 |
MS.gene037979.t1 | AT3G14980 | 27.778 | 216 | 110 | 6 | 489 | 692 | 651 | 832 | 1.42e-19 | 94.7 |
MS.gene037979.t1 | AT3G14980 | 27.778 | 216 | 110 | 6 | 489 | 692 | 651 | 832 | 1.42e-19 | 94.7 |
MS.gene037979.t1 | AT3G14980 | 27.778 | 216 | 110 | 6 | 489 | 692 | 651 | 832 | 1.42e-19 | 94.7 |
MS.gene037979.t1 | AT3G14980 | 27.778 | 216 | 110 | 6 | 489 | 692 | 606 | 787 | 1.59e-19 | 94.4 |
MS.gene037979.t1 | AT3G14980 | 27.778 | 216 | 110 | 6 | 489 | 692 | 651 | 832 | 1.82e-19 | 94.4 |
MS.gene037979.t1 | AT3G14980 | 27.778 | 216 | 110 | 6 | 489 | 692 | 651 | 832 | 1.95e-19 | 94.0 |
Find 189 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTAGGAATATGTGATTATT+TGG | 0.150813 | 1.4:+55139579 | None:intergenic |
AATCTGCTCTTTACCTTTCC+AGG | 0.198769 | 1.4:+55139872 | None:intergenic |
GCAAATGATGATTATAATAG+TGG | 0.236158 | 1.4:-55140073 | MS.gene037979:CDS |
GTTGAGCTCGATGGGATTAT+TGG | 0.243862 | 1.4:-55139783 | MS.gene037979:CDS |
TCATGTATAATGCTATAAAT+TGG | 0.250757 | 1.4:+55139546 | None:intergenic |
AATCACATATTCCTAGAAAA+TGG | 0.255410 | 1.4:-55139573 | MS.gene037979:CDS |
TCACGGGGATGATGAATATT+TGG | 0.260379 | 1.4:-55140095 | MS.gene037979:CDS |
GAAGATTCGGAGTTGTATTC+TGG | 0.287560 | 1.4:-55140010 | MS.gene037979:CDS |
CATCCACCCACTTCATATTC+TGG | 0.300717 | 1.4:+55134708 | None:intergenic |
GAACCTTCTTGCTGCTTTGT+AGG | 0.312071 | 1.4:+55138303 | None:intergenic |
TATGGGAATGGCAGTGGATA+TGG | 0.328598 | 1.4:-55140133 | MS.gene037979:CDS |
ACATTATTGGGGAAGGCGTT+TGG | 0.335634 | 1.4:+55139953 | None:intergenic |
TATCAACGAGGGATCCTTCC+AGG | 0.341212 | 1.4:-55139463 | MS.gene037979:CDS |
ATTTCAATTGCAGCCTGCTT+GGG | 0.355527 | 1.4:-55134843 | MS.gene037979:intron |
TATTTCAATTGCAGCCTGCT+TGG | 0.361264 | 1.4:-55134844 | MS.gene037979:intron |
ACGAGGGATCCTTCCAGGTT+TGG | 0.376818 | 1.4:-55139458 | MS.gene037979:CDS |
GGAGTTGTATTCTGGCAATA+TGG | 0.378266 | 1.4:-55140002 | MS.gene037979:CDS |
CGGTATAGCCAGTAGGTGTT+TGG | 0.378831 | 1.4:+55140185 | None:intergenic |
TGGGTGGATGCGTTGTTTGC+AGG | 0.387332 | 1.4:-55134695 | MS.gene037979:intron |
CGGTTGAACTAGCATGCTTC+GGG | 0.390012 | 1.4:+55140263 | None:intergenic |
TGTTCTGTTGCAGAAACATT+TGG | 0.398769 | 1.4:+55140514 | None:intergenic |
GATGGCAGTGGCAGTGACTA+TGG | 0.400420 | 1.4:-55140163 | MS.gene037979:CDS |
GTATCATGTTGGTTGCTTGC+GGG | 0.403484 | 1.4:-55134122 | MS.gene037979:CDS |
CTCATCTGGCGTGCTGTTTG+TGG | 0.404835 | 1.4:+55139512 | None:intergenic |
AACTACTCACGGTTGACGTC+TGG | 0.405856 | 1.4:+55135419 | None:intergenic |
TTATCAACCGGTATCCTTGA+TGG | 0.408535 | 1.4:-55139920 | MS.gene037979:CDS |
CCTTGTCGGAACTAATAATC+AGG | 0.420091 | 1.4:-55133888 | MS.gene037979:CDS |
AAAAGTAATCTTTCGAATAC+CGG | 0.420888 | 1.4:+55140243 | None:intergenic |
CTGCAGAACTCAGTTTCTGC+TGG | 0.425684 | 1.4:-55133931 | MS.gene037979:CDS |
AGTGGATATGGCTATGGATA+TGG | 0.426832 | 1.4:-55140121 | MS.gene037979:CDS |
TGGTAGAGAGCTCGTATGGC+AGG | 0.428854 | 1.4:-55140048 | MS.gene037979:CDS |
GTTGGTTGCTTGCGGGACAT+TGG | 0.430834 | 1.4:-55134115 | MS.gene037979:CDS |
ACATTCTTTATAACCTCATC+TGG | 0.434195 | 1.4:+55139498 | None:intergenic |
CCGGTTGAACTAGCATGCTT+CGG | 0.435129 | 1.4:+55140262 | None:intergenic |
AACAGTAATAATTTGTGATC+AGG | 0.437855 | 1.4:-55134239 | MS.gene037979:intron |
CCGAAGCATGCTAGTTCAAC+CGG | 0.438023 | 1.4:-55140262 | MS.gene037979:CDS |
AATTTGTGTCAGAATGATAA+AGG | 0.439373 | 1.4:-55140328 | MS.gene037979:CDS |
CAATTCCAACCTTGATTCCT+CGG | 0.442972 | 1.4:+55140645 | None:intergenic |
CGTGTCAACCGTATCATGAT+TGG | 0.445167 | 1.4:+55134744 | None:intergenic |
TTCTTTGCAATGGATGTCCT+AGG | 0.446094 | 1.4:-55135199 | MS.gene037979:CDS |
CAGCAGCTCGTGAAAGTAAC+GGG | 0.448638 | 1.4:+55133773 | None:intergenic |
GTTTCCACTCATCAGCTGTC+TGG | 0.451039 | 1.4:+55136179 | None:intergenic |
TACCATACCATCTTCCTTGT+CGG | 0.451679 | 1.4:-55133902 | MS.gene037979:CDS |
TTGGTTGCTTGCGGGACATT+GGG | 0.451865 | 1.4:-55134114 | MS.gene037979:CDS |
AAATACAGCACAAAGTATAC+TGG | 0.455013 | 1.4:-55138269 | MS.gene037979:CDS |
AATTGTCACCTTTCCAAACC+TGG | 0.456107 | 1.4:+55139445 | None:intergenic |
AGCAGTTTGTGTGCAAGAAT+TGG | 0.459554 | 1.4:-55140689 | MS.gene037979:CDS |
GTTTACCTGTTGTATGTATG+AGG | 0.461715 | 1.4:+55138242 | None:intergenic |
GGAACTGACATCTACTGGTT+TGG | 0.462522 | 1.4:-55140422 | MS.gene037979:CDS |
ACTCACGGTATCATGAGAAC+TGG | 0.465826 | 1.4:+55140393 | None:intergenic |
ATATGTTCCTTATGAAGATT+CGG | 0.467208 | 1.4:-55140023 | MS.gene037979:CDS |
TAAGCCAACTCGGCACCATC+TGG | 0.474427 | 1.4:+55135746 | None:intergenic |
ATCAAATGATGAATTGCGTT+CGG | 0.474499 | 1.4:-55140548 | MS.gene037979:CDS |
ACAACAAAACCACTTATCCT+TGG | 0.476811 | 1.4:+55133981 | None:intergenic |
GATGATTACCAAACACCTAC+TGG | 0.479989 | 1.4:-55140193 | MS.gene037979:CDS |
GGAGGTTACAAACAAGGAAA+TGG | 0.483140 | 1.4:-55135602 | MS.gene037979:CDS |
CAACAAAACCACTTATCCTT+GGG | 0.483162 | 1.4:+55133982 | None:intergenic |
GGCTATGGATATGGTTATCA+CGG | 0.483376 | 1.4:-55140112 | MS.gene037979:CDS |
CGTCACTATCTCCCGTAGTA+AGG | 0.483399 | 1.4:+55135258 | None:intergenic |
ATAGCTCTCTCTTTAGCAAA+TGG | 0.484963 | 1.4:-55135287 | MS.gene037979:CDS |
TGTGTGCAAGAATTGGTTGA+TGG | 0.485091 | 1.4:-55140682 | MS.gene037979:CDS |
CGGAAAATACCGAGGAATCA+AGG | 0.492209 | 1.4:-55140654 | MS.gene037979:CDS |
GCACCATCTGGTAGGCCATT+AGG | 0.495313 | 1.4:+55135758 | None:intergenic |
GATCACAAATTATTACTGTT+CGG | 0.496937 | 1.4:+55134242 | None:intergenic |
GTCTGGCCGCCATTCCAGCA+TGG | 0.498328 | 1.4:+55135436 | None:intergenic |
ATTAGTTCCGACAAGGAAGA+TGG | 0.499097 | 1.4:+55133895 | None:intergenic |
CGCCACATATATGCTTCCAA+TGG | 0.499581 | 1.4:-55135326 | MS.gene037979:CDS |
TCGCAGTTTGAAGCCCATGC+TGG | 0.501139 | 1.4:-55135450 | MS.gene037979:CDS |
ATGGCTAACATTCTCAGATT+CGG | 0.501313 | 1.4:+55140456 | None:intergenic |
TGCCACTTAAAATTCTCCAT+TGG | 0.501723 | 1.4:+55133818 | None:intergenic |
ATTATTAGGTTGAGCTCGAT+GGG | 0.503113 | 1.4:-55139791 | MS.gene037979:intron |
AGACAATGCCAACCACTCTC+TGG | 0.504882 | 1.4:+55134807 | None:intergenic |
TCTTTGCAATGGATGTCCTA+GGG | 0.507931 | 1.4:-55135198 | MS.gene037979:CDS |
GCATGCCTCATACATACAAC+AGG | 0.508258 | 1.4:-55138247 | MS.gene037979:intron |
AGTGACTATGGATATAGCTA+TGG | 0.509498 | 1.4:-55140151 | MS.gene037979:CDS |
AGGAGCTTCCCAAGGATAAG+TGG | 0.511538 | 1.4:-55133990 | MS.gene037979:CDS |
CATTCTCAGATTCGGTCGGT+TGG | 0.512953 | 1.4:+55140464 | None:intergenic |
CTGTGGTTGTTGTGATATAG+AGG | 0.515703 | 1.4:-55135573 | MS.gene037979:intron |
GCATGGGCTTCAAACTGCGA+AGG | 0.518290 | 1.4:+55135453 | None:intergenic |
GTTTGAAGCCCATGCTGGAA+TGG | 0.519222 | 1.4:-55135445 | MS.gene037979:CDS |
TACAACTCCGAATCTTCATA+AGG | 0.519644 | 1.4:+55140016 | None:intergenic |
CTGATGGTTGCACTAAGAAA+AGG | 0.521651 | 1.4:-55135947 | MS.gene037979:intron |
AGCATGCTGCTCAAACTCAT+AGG | 0.521651 | 1.4:+55139620 | None:intergenic |
AATTATTAGGTTGAGCTCGA+TGG | 0.522687 | 1.4:-55139792 | MS.gene037979:intron |
AGTATCATGTTGGTTGCTTG+CGG | 0.523548 | 1.4:-55134123 | MS.gene037979:CDS |
GGAGATTTGATTCTTTGCAA+TGG | 0.524987 | 1.4:-55135209 | MS.gene037979:CDS |
TCTGGCCGCCATTCCAGCAT+GGG | 0.525191 | 1.4:+55135437 | None:intergenic |
GTGAAATATATTTATAACCC+TGG | 0.528498 | 1.4:-55139890 | MS.gene037979:CDS |
ATCATGAAGTGTCAATCCAT+TGG | 0.529107 | 1.4:+55135310 | None:intergenic |
TATAGCTATGGGAATGGCAG+TGG | 0.529302 | 1.4:-55140139 | MS.gene037979:CDS |
ATCTGCTCTTTACCTTTCCA+GGG | 0.529845 | 1.4:+55139873 | None:intergenic |
TAATCAGGAAGCATGAGGAC+AGG | 0.533029 | 1.4:-55133873 | MS.gene037979:CDS |
ATGTTAGCCATGCAGAGTGT+GGG | 0.533335 | 1.4:-55140444 | MS.gene037979:CDS |
TCGCACACGCGAAGATGAGA+AGG | 0.534198 | 1.4:+55136231 | None:intergenic |
GCTATGGATATGGTTATCAC+GGG | 0.534961 | 1.4:-55140111 | MS.gene037979:CDS |
AATCAGGAAGCATGAGGACA+GGG | 0.536694 | 1.4:-55133872 | MS.gene037979:CDS |
TTCCGACAAGGAAGATGGTA+TGG | 0.538378 | 1.4:+55133900 | None:intergenic |
AATGGCAGTGGATATGGCTA+TGG | 0.538700 | 1.4:-55140127 | MS.gene037979:CDS |
TATGAGTTTGAGCAGCATGC+TGG | 0.538811 | 1.4:-55139618 | MS.gene037979:CDS |
TGCAGTGTCCCGTGTTGTGA+TGG | 0.540141 | 1.4:-55140290 | MS.gene037979:CDS |
TGTGGGGAACTGACATCTAC+TGG | 0.541241 | 1.4:-55140427 | MS.gene037979:CDS |
GACAGGGGATTATGTACGTA+TGG | 0.542273 | 1.4:-55133856 | MS.gene037979:CDS |
TGCAGCTCCATCAAGGATAC+CGG | 0.549874 | 1.4:+55139913 | None:intergenic |
CCTAGCACCTCTTTCATCAC+CGG | 0.553179 | 1.4:+55134767 | None:intergenic |
TCAGGGACAACGATTTGCAC+AGG | 0.553644 | 1.4:-55135793 | MS.gene037979:intron |
CCTACCAGATGGTGCCGAGT+TGG | 0.554670 | 1.4:-55135750 | MS.gene037979:CDS |
ATAGTCACTGCCACTGCCAT+CGG | 0.556162 | 1.4:+55140165 | None:intergenic |
ATGCCTAATGGCCTACCAGA+TGG | 0.557585 | 1.4:-55135761 | MS.gene037979:CDS |
AAATGGTCAAAACCTTACTA+CGG | 0.559162 | 1.4:-55135270 | MS.gene037979:CDS |
GACGATATGTGTGCAGTATG+TGG | 0.562409 | 1.4:-55135239 | MS.gene037979:CDS |
GGACATTGGGCTATGTGAGT+TGG | 0.565407 | 1.4:-55134101 | MS.gene037979:CDS |
AAATACCGAGGAATCAAGGT+TGG | 0.565993 | 1.4:-55140650 | MS.gene037979:CDS |
GGCTTACTATGTCAAAGGAC+AGG | 0.566342 | 1.4:-55135729 | MS.gene037979:intron |
TACACTGTGTAAACCCAAGC+AGG | 0.566345 | 1.4:+55134830 | None:intergenic |
CTAAATTGTGAAGATAATAC+CGG | 0.566713 | 1.4:-55134786 | MS.gene037979:CDS |
GGATCCTTCCAGGTTTGGAA+AGG | 0.568977 | 1.4:-55139453 | MS.gene037979:intron |
CAATCATGATACGGTTGACA+CGG | 0.569872 | 1.4:-55134743 | MS.gene037979:CDS |
GAGACATGAATGATATCCAA+TGG | 0.570210 | 1.4:-55133834 | MS.gene037979:CDS |
GAGGTTATAAAGAATGTGGC+TGG | 0.571005 | 1.4:-55139492 | MS.gene037979:CDS |
GCAGCAGCTCGTGAAAGTAA+CGG | 0.572775 | 1.4:+55133772 | None:intergenic |
GAGTAGTAAGTGTAGGTGCT+TGG | 0.573254 | 1.4:+55135993 | None:intergenic |
TTGGCTGCTAATATCATGAA+AGG | 0.573840 | 1.4:+55140483 | None:intergenic |
ATTTCACTGCAGCTCCATCA+AGG | 0.579262 | 1.4:+55139906 | None:intergenic |
GTGACTATGGATATAGCTAT+GGG | 0.582699 | 1.4:-55140150 | MS.gene037979:CDS |
AATGGTCAAAACCTTACTAC+GGG | 0.583818 | 1.4:-55135269 | MS.gene037979:CDS |
CTCGATGGGATTATTGGTGA+TGG | 0.584397 | 1.4:-55139777 | MS.gene037979:CDS |
GGTAGAGAGCTCGTATGGCA+GGG | 0.584644 | 1.4:-55140047 | MS.gene037979:CDS |
CCTGATTATTAGTTCCGACA+AGG | 0.584730 | 1.4:+55133888 | None:intergenic |
GATAATACCGGTGATGAAAG+AGG | 0.586090 | 1.4:-55134774 | MS.gene037979:CDS |
CGGGATTTCCATCACAACAC+GGG | 0.586430 | 1.4:+55140282 | None:intergenic |
GTCACCTTTCCAAACCTGGA+AGG | 0.586888 | 1.4:+55139449 | None:intergenic |
ACAGTGTACCAGAGAGTGGT+TGG | 0.587119 | 1.4:-55134815 | MS.gene037979:CDS |
TATGGATATAGCTATGGGAA+TGG | 0.587377 | 1.4:-55140145 | MS.gene037979:CDS |
TCAGTTCCCCACACTCTGCA+TGG | 0.587821 | 1.4:+55140437 | None:intergenic |
TCTCCTACAAAGCAGCAAGA+AGG | 0.591457 | 1.4:-55138306 | MS.gene037979:CDS |
GTGCTAGGCCAATCATGATA+CGG | 0.593336 | 1.4:-55134752 | MS.gene037979:CDS |
GGGTTGGTAGAGAGCTCGTA+TGG | 0.593441 | 1.4:-55140052 | MS.gene037979:CDS |
TGAGTGATGAAGCTGGTGTT+CGG | 0.593660 | 1.4:-55140375 | MS.gene037979:CDS |
CGACTGCAATCGATTATATG+TGG | 0.593667 | 1.4:-55133956 | MS.gene037979:CDS |
CATGGGCTTCAAACTGCGAA+GGG | 0.593763 | 1.4:+55135454 | None:intergenic |
ATGTGTGCAGTATGTGGAGA+TGG | 0.595554 | 1.4:-55135233 | MS.gene037979:CDS |
CAAGGAAATGGTATAGTCTG+TGG | 0.597162 | 1.4:-55135590 | MS.gene037979:CDS |
AGAATTGGTTGATGGAAAGA+CGG | 0.598733 | 1.4:-55140674 | MS.gene037979:CDS |
AGCACCTACACTTACTACTC+AGG | 0.600275 | 1.4:-55135990 | MS.gene037979:CDS |
ATCCATTGGAAGCATATATG+TGG | 0.600631 | 1.4:+55135324 | None:intergenic |
TTTCAGTATCAGCAACACAT+TGG | 0.609213 | 1.4:+55140608 | None:intergenic |
AACACCAGCTTCATCACTCA+CGG | 0.612359 | 1.4:+55140378 | None:intergenic |
ATATATTTATAACCCTGGAA+AGG | 0.612693 | 1.4:-55139885 | MS.gene037979:intron |
TTTACTACAGGAGCTTCCCA+AGG | 0.613778 | 1.4:-55133998 | MS.gene037979:intron |
TGAAGCCCATGCTGGAATGG+CGG | 0.615089 | 1.4:-55135442 | MS.gene037979:CDS |
GAACCAGAATATGAAGTGGG+TGG | 0.615638 | 1.4:-55134711 | MS.gene037979:CDS |
TAAAGAACCAGAATATGAAG+TGG | 0.620957 | 1.4:-55134715 | MS.gene037979:CDS |
TGATGATTATAATAGTGGGT+TGG | 0.621646 | 1.4:-55140068 | MS.gene037979:CDS |
CCGCAGAAGAGAAGTGCTGA+TGG | 0.622167 | 1.4:-55135963 | MS.gene037979:CDS |
GTAGAGAGCTCGTATGGCAG+GGG | 0.622368 | 1.4:-55140046 | MS.gene037979:CDS |
CTAACATTCTCAGATTCGGT+CGG | 0.622546 | 1.4:+55140460 | None:intergenic |
GAGTTGGCTTACTATGTCAA+AGG | 0.622870 | 1.4:-55135734 | MS.gene037979:CDS |
CACAAACAGCACGCCAGATG+AGG | 0.626750 | 1.4:-55139511 | MS.gene037979:CDS |
AATCATGATACGGTTGACAC+GGG | 0.627097 | 1.4:-55134742 | MS.gene037979:CDS |
TTACTTGGAGGTTACAAACA+AGG | 0.627097 | 1.4:-55135608 | MS.gene037979:CDS |
TCACCTGCATGAAAAGCCCT+AGG | 0.627515 | 1.4:+55135182 | None:intergenic |
CTGCCATCGGTATAGCCAGT+AGG | 0.629361 | 1.4:+55140178 | None:intergenic |
TGTTAGCCATGCAGAGTGTG+GGG | 0.629545 | 1.4:-55140443 | MS.gene037979:CDS |
CCAACTCGGCACCATCTGGT+AGG | 0.631639 | 1.4:+55135750 | None:intergenic |
CAAATGATGATTATAATAGT+GGG | 0.633509 | 1.4:-55140072 | MS.gene037979:CDS |
ACTAATAATCAGGAAGCATG+AGG | 0.636804 | 1.4:-55133878 | MS.gene037979:CDS |
AAAGAACCAGAATATGAAGT+GGG | 0.639564 | 1.4:-55134714 | MS.gene037979:CDS |
AATGTTAGCCATGCAGAGTG+TGG | 0.640010 | 1.4:-55140445 | MS.gene037979:CDS |
TCGGGATTTCCATCACAACA+CGG | 0.640467 | 1.4:+55140281 | None:intergenic |
ACACCTACTGGCTATACCGA+TGG | 0.641142 | 1.4:-55140181 | MS.gene037979:CDS |
TGTGCAGTATGTGGAGATGG+AGG | 0.641733 | 1.4:-55135230 | MS.gene037979:CDS |
AGATGAGGTTATAAAGAATG+TGG | 0.645405 | 1.4:-55139496 | MS.gene037979:CDS |
TATACCTGAGTAGTAAGTGT+AGG | 0.646579 | 1.4:+55135986 | None:intergenic |
ACTGGCTATACCGATGGCAG+TGG | 0.650962 | 1.4:-55140175 | MS.gene037979:CDS |
GATGGGATTATTGGTGATGG+TGG | 0.652514 | 1.4:-55139774 | MS.gene037979:CDS |
TGAACCAGACAGCTGATGAG+TGG | 0.653688 | 1.4:-55136183 | MS.gene037979:CDS |
TTACACAGTGTACCAGAGAG+TGG | 0.659593 | 1.4:-55134819 | MS.gene037979:CDS |
CCATCAGCACTTCTCTTCTG+CGG | 0.662514 | 1.4:+55135963 | None:intergenic |
TTTGACATAGTAAGCCAACT+CGG | 0.664130 | 1.4:+55135736 | None:intergenic |
CCGGTGATGAAAGAGGTGCT+AGG | 0.664182 | 1.4:-55134767 | MS.gene037979:CDS |
CATTGGAAGCATATATGTGG+CGG | 0.666351 | 1.4:+55135327 | None:intergenic |
ATCAGGAAGCATGAGGACAG+GGG | 0.674473 | 1.4:-55133871 | MS.gene037979:CDS |
GCTGGTTCATCTATCAACGA+GGG | 0.690296 | 1.4:-55139474 | MS.gene037979:CDS |
GATACCGTGAGTGATGAAGC+TGG | 0.694052 | 1.4:-55140382 | MS.gene037979:CDS |
TGTGAGAAGGAGTATCATGT+TGG | 0.706727 | 1.4:-55134133 | MS.gene037979:CDS |
TGGAAAGACGGAAAATACCG+AGG | 0.709142 | 1.4:-55140662 | MS.gene037979:CDS |
CTATGGATATGGTTATCACG+GGG | 0.709587 | 1.4:-55140110 | MS.gene037979:CDS |
GGCTGGTTCATCTATCAACG+AGG | 0.715047 | 1.4:-55139475 | MS.gene037979:CDS |
GGTGATGGTGGATATCTGTG+TGG | 0.715376 | 1.4:-55139762 | MS.gene037979:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.4 | gene | 55133762 | 55140722 | 55133762 | ID=MS.gene037979 |
chr1.4 | mRNA | 55133762 | 55140722 | 55133762 | ID=MS.gene037979.t1;Parent=MS.gene037979 |
chr1.4 | exon | 55139886 | 55140722 | 55139886 | ID=MS.gene037979.t1.exon1;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55139886 | 55140722 | 55139886 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55139737 | 55139805 | 55139737 | ID=MS.gene037979.t1.exon2;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55139737 | 55139805 | 55139737 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55139454 | 55139652 | 55139454 | ID=MS.gene037979.t1.exon3;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55139454 | 55139652 | 55139454 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55138248 | 55138332 | 55138248 | ID=MS.gene037979.t1.exon4;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55138248 | 55138332 | 55138248 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55136166 | 55136276 | 55136166 | ID=MS.gene037979.t1.exon5;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55136166 | 55136276 | 55136166 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55135948 | 55136016 | 55135948 | ID=MS.gene037979.t1.exon6;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55135948 | 55136016 | 55135948 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55135730 | 55135811 | 55135730 | ID=MS.gene037979.t1.exon7;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55135730 | 55135811 | 55135730 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55135574 | 55135633 | 55135574 | ID=MS.gene037979.t1.exon8;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55135574 | 55135633 | 55135574 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55135429 | 55135481 | 55135429 | ID=MS.gene037979.t1.exon9;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55135429 | 55135481 | 55135429 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55135186 | 55135352 | 55135186 | ID=MS.gene037979.t1.exon10;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55135186 | 55135352 | 55135186 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55134696 | 55134852 | 55134696 | ID=MS.gene037979.t1.exon11;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55134696 | 55134852 | 55134696 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55134240 | 55134297 | 55134240 | ID=MS.gene037979.t1.exon12;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55134240 | 55134297 | 55134240 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55134099 | 55134155 | 55134099 | ID=MS.gene037979.t1.exon13;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55134099 | 55134155 | 55134099 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
chr1.4 | exon | 55133762 | 55134010 | 55133762 | ID=MS.gene037979.t1.exon14;Parent=MS.gene037979.t1 |
chr1.4 | CDS | 55133762 | 55134010 | 55133762 | ID=cds.MS.gene037979.t1;Parent=MS.gene037979.t1 |
Gene Sequence |
Protein sequence |