Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037997.t1 | XP_013468353.1 | 90.5 | 452 | 41 | 1 | 1 | 450 | 1 | 452 | 8.40E-224 | 786.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037997.t1 | F4KCE9 | 42.9 | 133 | 70 | 4 | 18 | 146 | 11 | 141 | 2.6e-24 | 114.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037997.t1 | A0A072VWG5 | 90.5 | 452 | 41 | 1 | 1 | 450 | 1 | 452 | 6.1e-224 | 786.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene037997.t1 | TR | Others |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037997.t1 | MTR_1g069015 | 90.487 | 452 | 41 | 1 | 1 | 450 | 1 | 452 | 0.0 | 826 |
MS.gene037997.t1 | MTR_1g069020 | 65.839 | 322 | 98 | 3 | 129 | 450 | 246 | 555 | 1.06e-124 | 375 |
MS.gene037997.t1 | MTR_1g069020 | 59.451 | 328 | 117 | 4 | 22 | 344 | 26 | 342 | 4.93e-122 | 369 |
MS.gene037997.t1 | MTR_7g039520 | 35.000 | 140 | 81 | 5 | 1 | 137 | 1 | 133 | 6.81e-18 | 85.1 |
MS.gene037997.t1 | MTR_5g040080 | 35.000 | 140 | 81 | 5 | 1 | 137 | 1 | 133 | 8.13e-18 | 85.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene037997.t1 | AT5G02520 | 42.857 | 133 | 70 | 4 | 18 | 146 | 11 | 141 | 8.02e-29 | 120 |
MS.gene037997.t1 | AT5G02520 | 42.857 | 133 | 70 | 4 | 18 | 146 | 11 | 141 | 1.11e-28 | 119 |
MS.gene037997.t1 | AT5G02520 | 43.284 | 134 | 69 | 5 | 18 | 146 | 11 | 142 | 5.88e-28 | 117 |
MS.gene037997.t1 | AT1G58210 | 39.823 | 113 | 64 | 2 | 3 | 115 | 45 | 153 | 8.97e-17 | 80.9 |
Find 108 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACCATCAGATGATATTTC+TGG | 0.152483 | 1.1:+50458811 | None:intergenic |
CTCTGTTTCTCCAGAGTCAT+TGG | 0.218790 | 1.1:-50458152 | MS.gene037997:CDS |
CTTCATGAATTGACAATGAT+TGG | 0.243509 | 1.1:+50458099 | None:intergenic |
CGGTAACAGGCTGTTTCTTC+TGG | 0.258466 | 1.1:+50458506 | None:intergenic |
GAGGTTGTTATAAGAGAAAA+AGG | 0.309998 | 1.1:-50458297 | MS.gene037997:CDS |
TGTCAAGAAATCTTGTTTGA+TGG | 0.311615 | 1.1:-50459250 | MS.gene037997:intron |
CGGAAGCAGCAGCCTGCATC+TGG | 0.314800 | 1.1:-50458937 | MS.gene037997:CDS |
TCTTTATCTGGATGTGTTGC+CGG | 0.325220 | 1.1:+50458478 | None:intergenic |
GAGCAGCGCACGCTGGAAAA+TGG | 0.336004 | 1.1:-50459555 | MS.gene037997:CDS |
AGAGCATAGCTTTCCCAGTT+TGG | 0.337878 | 1.1:+50459346 | None:intergenic |
TGATTCGGCCAATGCTGTTC+CGG | 0.339045 | 1.1:-50459290 | MS.gene037997:CDS |
GGAATAGTAAACACATTGTC+TGG | 0.341105 | 1.1:-50458376 | MS.gene037997:CDS |
GTGGAGATCTGGTCTTTATC+TGG | 0.363337 | 1.1:+50458466 | None:intergenic |
AGTGGGGTTGATGTTACTTA+TGG | 0.365193 | 1.1:-50459012 | MS.gene037997:CDS |
CAGAAGAAACAGCCTGTTAC+CGG | 0.388877 | 1.1:-50458505 | MS.gene037997:CDS |
AGAGTTTAACATTATGCAAC+CGG | 0.398439 | 1.1:+50458530 | None:intergenic |
AACCCCACTCATCTCCTTTG+AGG | 0.416310 | 1.1:+50459026 | None:intergenic |
GGTGTTGCCTGACGAGGCCC+TGG | 0.428575 | 1.1:-50459088 | MS.gene037997:CDS |
TCTGTTTCTCCAGAGTCATT+GGG | 0.438436 | 1.1:-50458151 | MS.gene037997:CDS |
CAATCTCCCGTGGTCTTATC+CGG | 0.440181 | 1.1:+50458646 | None:intergenic |
TCCTACTTCTTTGGTATCAC+CGG | 0.443039 | 1.1:-50458665 | MS.gene037997:CDS |
GAAGAAAGGGTTGCAGTTGG+AGG | 0.446563 | 1.1:+50460913 | None:intergenic |
GGCATTCCTCGAAGATGAAC+GGG | 0.446700 | 1.1:-50458617 | MS.gene037997:CDS |
GGTGAGGTCAATGTTGTTCA+TGG | 0.450542 | 1.1:-50458577 | MS.gene037997:CDS |
TCTAGGTTACTTTATACGAT+TGG | 0.451256 | 1.1:-50460766 | MS.gene037997:intron |
TTCTTCTAGTTTCCGACGAA+CGG | 0.453700 | 1.1:-50460875 | MS.gene037997:intron |
GACACCCATTCAGTCACAAA+AGG | 0.454994 | 1.1:-50458398 | MS.gene037997:CDS |
GTTGCCGGATCTCCGGTAAC+AGG | 0.455494 | 1.1:+50458493 | None:intergenic |
ACATGTCCCGTTCATCTTCG+AGG | 0.466823 | 1.1:+50458611 | None:intergenic |
CAATCATTGTCAATTCATGA+AGG | 0.471470 | 1.1:-50458098 | MS.gene037997:CDS |
AGGCTGGTAAGGTGGAGATC+TGG | 0.472582 | 1.1:+50458455 | None:intergenic |
GATCTCCACCTTACCAGCCT+TGG | 0.478185 | 1.1:-50458452 | MS.gene037997:CDS |
ACAGCCTGTTACCGGAGATC+CGG | 0.478659 | 1.1:-50458497 | MS.gene037997:CDS |
GACCACGGGAGATTGCAATA+AGG | 0.479142 | 1.1:-50458638 | MS.gene037997:CDS |
TGGATGTGTTGCCGGATCTC+CGG | 0.481700 | 1.1:+50458486 | None:intergenic |
AGGTTACTTTATACGATTGG+TGG | 0.484584 | 1.1:-50460763 | MS.gene037997:CDS |
ATCTGAAGCTGATATTGATT+CGG | 0.486466 | 1.1:-50459305 | MS.gene037997:CDS |
AAGGGTTGCAGTTGGAGGAG+TGG | 0.499037 | 1.1:+50460918 | None:intergenic |
GCTCTAGAATGCACCGGAGA+AGG | 0.500619 | 1.1:-50459328 | MS.gene037997:CDS |
AAATTTCATTCCTACTTCGT+TGG | 0.500725 | 1.1:-50459109 | MS.gene037997:CDS |
GGAAACCGTTTAGCCATCTC+TGG | 0.503556 | 1.1:-50460722 | MS.gene037997:CDS |
GTCAATGTTGTTCATGGTAG+TGG | 0.510692 | 1.1:-50458571 | MS.gene037997:CDS |
AGAAGTGGAAACTCGTGATT+CGG | 0.511753 | 1.1:-50458869 | MS.gene037997:CDS |
CTGTAAAATCTTCACAAGGA+AGG | 0.513105 | 1.1:-50458216 | MS.gene037997:CDS |
TGTAAAATCTTCACAAGGAA+GGG | 0.521070 | 1.1:-50458215 | MS.gene037997:CDS |
TGGTATATATGTTATCACTA+GGG | 0.526872 | 1.1:-50459589 | MS.gene037997:CDS |
TACACTATCCGGAACAGCAT+TGG | 0.528438 | 1.1:+50459282 | None:intergenic |
CTACGATGACCTCCAGATGC+AGG | 0.528905 | 1.1:+50458925 | None:intergenic |
ACACCCATTCAGTCACAAAA+GGG | 0.532185 | 1.1:-50458397 | MS.gene037997:CDS |
GTTGATGTTACTTATGGTAG+TGG | 0.532246 | 1.1:-50459006 | MS.gene037997:CDS |
GGAAAATGCAAGAAACCATT+CGG | 0.536222 | 1.1:-50459066 | MS.gene037997:CDS |
AGATGCCAGAGATGGCTAAA+CGG | 0.536792 | 1.1:+50460717 | None:intergenic |
AAAAGAATGCAAAGCCTCAA+AGG | 0.537351 | 1.1:-50459040 | MS.gene037997:CDS |
CAAATTGCAGATACACTATC+CGG | 0.539970 | 1.1:+50459271 | None:intergenic |
AACATTAATAGCACGTAACC+TGG | 0.544388 | 1.1:+50458966 | None:intergenic |
ACTGCAACCCTTTCTTCCAA+TGG | 0.545228 | 1.1:-50460907 | MS.gene037997:CDS |
ATATACCATCGGCAGTCTCA+AGG | 0.545294 | 1.1:+50459604 | None:intergenic |
GAGCTCTACCTCAACAGAAG+TGG | 0.545818 | 1.1:-50458884 | MS.gene037997:CDS |
AGTAAACACATTGTCTGGGC+AGG | 0.549663 | 1.1:-50458371 | MS.gene037997:CDS |
TTCGTTGGTGTTGCCTGACG+AGG | 0.551013 | 1.1:-50459094 | MS.gene037997:CDS |
ATGTTGTTCATGGTAGTGGC+AGG | 0.553357 | 1.1:-50458567 | MS.gene037997:CDS |
ATCAGCTTCAGATCCTTCTC+CGG | 0.554639 | 1.1:+50459315 | None:intergenic |
TTGGAAGAAAGGGTTGCAGT+TGG | 0.555270 | 1.1:+50460910 | None:intergenic |
ATGGTATATATGTTATCACT+AGG | 0.556691 | 1.1:-50459590 | MS.gene037997:CDS |
GCGAAAATAGACATGGTACC+AGG | 0.560344 | 1.1:-50458984 | MS.gene037997:CDS |
AAGCCTCAAAGGAGATGAGT+GGG | 0.564158 | 1.1:-50459029 | MS.gene037997:CDS |
TCGTCGGAAACTAGAAGAAG+TGG | 0.565214 | 1.1:+50460879 | None:intergenic |
GCATAGCTTTCCCAGTTTGG+AGG | 0.565501 | 1.1:+50459349 | None:intergenic |
AAGCAGCAGCCTGCATCTGG+AGG | 0.566088 | 1.1:-50458934 | MS.gene037997:CDS |
GCAGGAATAGACGTAGTGCC+CGG | 0.566956 | 1.1:-50458549 | MS.gene037997:CDS |
TCAGGCAACACCAACGAAGT+AGG | 0.568738 | 1.1:+50459099 | None:intergenic |
GGAAAAGAGTGATGGAGGAC+TGG | 0.572017 | 1.1:-50458431 | MS.gene037997:CDS |
AGGCATTCCTCGAAGATGAA+CGG | 0.572872 | 1.1:-50458618 | MS.gene037997:CDS |
TCCGGTGATACCAAAGAAGT+AGG | 0.573504 | 1.1:+50458664 | None:intergenic |
GGATACAAGTCACTCGAACA+AGG | 0.576987 | 1.1:-50458194 | MS.gene037997:CDS |
ACGAGTTTCCACTTCTGTTG+AGG | 0.577453 | 1.1:+50458876 | None:intergenic |
CATGAACGAGCAGCGCACGC+TGG | 0.579334 | 1.1:-50459562 | MS.gene037997:CDS |
GGTATATATGTTATCACTAG+GGG | 0.588021 | 1.1:-50459588 | MS.gene037997:CDS |
CATCCAGAAATATCATCTGA+TGG | 0.590199 | 1.1:-50458814 | MS.gene037997:intron |
AGCTATGCTCTAGAATGCAC+CGG | 0.591217 | 1.1:-50459334 | MS.gene037997:CDS |
ACGGGACATGTCAATTAAGA+CGG | 0.591957 | 1.1:-50458599 | MS.gene037997:CDS |
CGGGACATGTCAATTAAGAC+GGG | 0.595490 | 1.1:-50458598 | MS.gene037997:CDS |
CGTCGGAAACTAGAAGAAGT+GGG | 0.595818 | 1.1:+50460880 | None:intergenic |
TCTGGAAGAGATGCCAGAGA+TGG | 0.599841 | 1.1:+50460709 | None:intergenic |
TGCCTTATTGCAATCTCCCG+TGG | 0.601695 | 1.1:+50458636 | None:intergenic |
GTGAGTAAACAACCGTTCGT+CGG | 0.603870 | 1.1:+50460863 | None:intergenic |
TATACCATCGGCAGTCTCAA+GGG | 0.605137 | 1.1:+50459605 | None:intergenic |
GAATAGTAAACACATTGTCT+GGG | 0.607705 | 1.1:-50458375 | MS.gene037997:CDS |
CCAGCCTTGGAAAAGAGTGA+TGG | 0.608271 | 1.1:-50458439 | MS.gene037997:CDS |
GATACAAGTCACTCGAACAA+GGG | 0.609110 | 1.1:-50458193 | MS.gene037997:CDS |
ACAGTTGAAACAGATGCAGT+TGG | 0.619629 | 1.1:-50458271 | MS.gene037997:CDS |
CTGCATCTGGAGGTCATCGT+AGG | 0.620919 | 1.1:-50458924 | MS.gene037997:CDS |
GCCTTGGAAAAGAGTGATGG+AGG | 0.621071 | 1.1:-50458436 | MS.gene037997:CDS |
AGTGATAACATATATACCAT+CGG | 0.622033 | 1.1:+50459593 | None:intergenic |
GTATCACCGGATAAGACCAC+GGG | 0.626364 | 1.1:-50458652 | MS.gene037997:CDS |
GTGTTGCCTGACGAGGCCCT+GGG | 0.635492 | 1.1:-50459087 | MS.gene037997:CDS |
TGGCTCGTTAAATCATCTCA+AGG | 0.637214 | 1.1:-50460743 | MS.gene037997:CDS |
CATGTCAATTAAGACGGGTG+AGG | 0.637260 | 1.1:-50458593 | MS.gene037997:CDS |
GAGTTTAACATTATGCAACC+GGG | 0.641017 | 1.1:+50458531 | None:intergenic |
GTCGGAAACTAGAAGAAGTG+GGG | 0.641310 | 1.1:+50460881 | None:intergenic |
AAAGCCTCAAAGGAGATGAG+TGG | 0.652543 | 1.1:-50459030 | MS.gene037997:CDS |
CAATGACTCTGGAGAAACAG+AGG | 0.661940 | 1.1:+50458153 | None:intergenic |
GTGCTATTAATGTTTGTCAG+CGG | 0.670687 | 1.1:-50458957 | MS.gene037997:CDS |
GGTATCACCGGATAAGACCA+CGG | 0.680385 | 1.1:-50458653 | MS.gene037997:CDS |
TCTTCTGTAAAATCTTCACA+AGG | 0.686047 | 1.1:-50458220 | MS.gene037997:CDS |
TCGGAAACTAGAAGAAGTGG+GGG | 0.688243 | 1.1:+50460882 | None:intergenic |
GGTAGTGGCGAAAATAGACA+TGG | 0.702887 | 1.1:-50458991 | MS.gene037997:CDS |
AGCCTCAAAGGAGATGAGTG+GGG | 0.721063 | 1.1:-50459028 | MS.gene037997:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATAAAAAAAATATTTGTAGA+AGG | + | chr1.1:50458769-50458788 | None:intergenic | 10.0% |
!! | ATTATTAAAACAAAACAATA+AGG | + | chr1.1:50458828-50458847 | None:intergenic | 10.0% |
!!! | ATTTCAAAGAATTTTTTATA+TGG | - | chr1.1:50459627-50459646 | MS.gene037997:CDS | 10.0% |
!! | ATGATAATACATTAAACAAA+TGG | + | chr1.1:50460266-50460285 | None:intergenic | 15.0% |
!! | GTAAAAAAAAAAAATTTGCA+AGG | + | chr1.1:50458798-50458817 | None:intergenic | 15.0% |
!! | AAAAAGAAAAATTGTTAAGC+AGG | + | chr1.1:50458665-50458684 | None:intergenic | 20.0% |
!! | ATACTTTATGTTGTAAATCA+GGG | - | chr1.1:50459318-50459337 | MS.gene037997:CDS | 20.0% |
!!! | ACATCATATCTTTTGATAAT+AGG | + | chr1.1:50459373-50459392 | None:intergenic | 20.0% |
!!! | GGTTTAATATTTTTTCTCTT+AGG | + | chr1.1:50460759-50460778 | None:intergenic | 20.0% |
!!! | TAAAATTATCATTTTCGAGT+CGG | - | chr1.1:50458548-50458567 | MS.gene037997:CDS | 20.0% |
!!! | TTTTAAGTTAGATGAAAACT+TGG | - | chr1.1:50458467-50458486 | MS.gene037997:CDS | 20.0% |
!!! | TTTTTTTTCTTTTCCTTTCT+AGG | - | chr1.1:50458220-50458239 | MS.gene037997:CDS | 20.0% |
! | AAACTCAACGTCATAAAATA+AGG | + | chr1.1:50459557-50459576 | None:intergenic | 25.0% |
! | AAATCTGTTCATATTGAAGT+TGG | + | chr1.1:50458927-50458946 | None:intergenic | 25.0% |
! | ACTAGCATTTATACATGAAA+AGG | + | chr1.1:50459207-50459226 | None:intergenic | 25.0% |
! | AGGACTAAAATGAATATTAG+AGG | - | chr1.1:50458899-50458918 | MS.gene037997:CDS | 25.0% |
! | AGGTTGTTATAAGAGAAAAA+GGG | - | chr1.1:50460707-50460726 | MS.gene037997:CDS | 25.0% |
! | AGTGATAACATATATACCAT+CGG | + | chr1.1:50459413-50459432 | None:intergenic | 25.0% |
! | ATAAAGCTTCAATATGCAAA+CGG | - | chr1.1:50458709-50458728 | MS.gene037997:intron | 25.0% |
! | ATGGTATATATGTTATCACT+AGG | - | chr1.1:50459413-50459432 | MS.gene037997:intron | 25.0% |
! | CATACTTTATGTTGTAAATC+AGG | - | chr1.1:50459317-50459336 | MS.gene037997:CDS | 25.0% |
! | GGACTAAAATGAATATTAGA+GGG | - | chr1.1:50458900-50458919 | MS.gene037997:CDS | 25.0% |
! | TGATAGAGATAAGAATAAGA+AGG | + | chr1.1:50458184-50458203 | None:intergenic | 25.0% |
! | TGGTATATATGTTATCACTA+GGG | - | chr1.1:50459414-50459433 | MS.gene037997:intron | 25.0% |
! | TTGAAATCTAACCATAAAGT+AGG | + | chr1.1:50459614-50459633 | None:intergenic | 25.0% |
!! | TATTTTACCATTGTCAAACA+TGG | + | chr1.1:50458692-50458711 | None:intergenic | 25.0% |
!!! | ATATCTTTTGATAATAGGAG+TGG | + | chr1.1:50459368-50459387 | None:intergenic | 25.0% |
!!! | TGTTTTTTTTGCCTACTTTA+TGG | - | chr1.1:50459600-50459619 | MS.gene037997:CDS | 25.0% |
!!! | TTGTTTGATGGTAAGTATTT+TGG | - | chr1.1:50459765-50459784 | MS.gene037997:intron | 25.0% |
!!! | TTTTTTACCATGTTTGACAA+TGG | - | chr1.1:50458682-50458701 | MS.gene037997:CDS | 25.0% |
AAATTTCATTCCTACTTCGT+TGG | - | chr1.1:50459894-50459913 | MS.gene037997:intron | 30.0% | |
AGAGTTTAACATTATGCAAC+CGG | + | chr1.1:50460476-50460495 | None:intergenic | 30.0% | |
CAATCATTGTCAATTCATGA+AGG | - | chr1.1:50460905-50460924 | MS.gene037997:CDS | 30.0% | |
CTCTCAATTACTATCATAAG+AGG | - | chr1.1:50459272-50459291 | MS.gene037997:CDS | 30.0% | |
CTTCATGAATTGACAATGAT+TGG | + | chr1.1:50460907-50460926 | None:intergenic | 30.0% | |
GAATAGTAAACACATTGTCT+GGG | - | chr1.1:50460628-50460647 | MS.gene037997:intron | 30.0% | |
GAGGTTGTTATAAGAGAAAA+AGG | - | chr1.1:50460706-50460725 | MS.gene037997:intron | 30.0% | |
GGTATATATGTTATCACTAG+GGG | - | chr1.1:50459415-50459434 | MS.gene037997:intron | 30.0% | |
TAGCTCATGTCTAAATTGTT+AGG | - | chr1.1:50458372-50458391 | MS.gene037997:CDS | 30.0% | |
TCGTATAAAGTAACCTAGAA+AGG | + | chr1.1:50458236-50458255 | None:intergenic | 30.0% | |
TCTTCTGTAAAATCTTCACA+AGG | - | chr1.1:50460783-50460802 | MS.gene037997:intron | 30.0% | |
TGTAAAATCTTCACAAGGAA+GGG | - | chr1.1:50460788-50460807 | MS.gene037997:intron | 30.0% | |
TTACCATCAGATGATATTTC+TGG | + | chr1.1:50460195-50460214 | None:intergenic | 30.0% | |
! | ATCTGAAGCTGATATTGATT+CGG | - | chr1.1:50459698-50459717 | MS.gene037997:intron | 30.0% |
! | CAATATGAACAGATTTTGCA+AGG | - | chr1.1:50458931-50458950 | MS.gene037997:CDS | 30.0% |
! | TCTAGGTTACTTTATACGAT+TGG | - | chr1.1:50458237-50458256 | MS.gene037997:CDS | 30.0% |
! | TGAAGATTTTACAGAAGATG+CGG | + | chr1.1:50460781-50460800 | None:intergenic | 30.0% |
! | TGTCAAGAAATCTTGTTTGA+TGG | - | chr1.1:50459753-50459772 | MS.gene037997:intron | 30.0% |
!! | AATTTAGCACCGTTTGATTT+TGG | + | chr1.1:50458978-50458997 | None:intergenic | 30.0% |
!! | GTCAAAACATTTCTAAGACA+TGG | + | chr1.1:50459814-50459833 | None:intergenic | 30.0% |
!!! | GTAGAGCTCTGTTTTTTATT+TGG | + | chr1.1:50460108-50460127 | None:intergenic | 30.0% |
!!! | TGAAAAAGTTTTGGGAATTC+TGG | + | chr1.1:50460676-50460695 | None:intergenic | 30.0% |
!!! | TTGGTTTTAATTGTTGTTGC+AGG | - | chr1.1:50459865-50459884 | MS.gene037997:intron | 30.0% |
AAAAGAATGCAAAGCCTCAA+AGG | - | chr1.1:50459963-50459982 | MS.gene037997:intron | 35.0% | |
AACATTAATAGCACGTAACC+TGG | + | chr1.1:50460040-50460059 | None:intergenic | 35.0% | |
AAGTGAAAACCCTTACTTTC+TGG | + | chr1.1:50458315-50458334 | None:intergenic | 35.0% | |
AAGTGAATAAGTGGAGAATC+CGG | + | chr1.1:50458635-50458654 | None:intergenic | 35.0% | |
AATAAGAAGGATGAGAGTGA+AGG | + | chr1.1:50458171-50458190 | None:intergenic | 35.0% | |
ACAATGCATTGCAATATGCA+GGG | - | chr1.1:50458594-50458613 | MS.gene037997:CDS | 35.0% | |
ACTAACAGTTAGCAGTTTGT+TGG | - | chr1.1:50459126-50459145 | MS.gene037997:intron | 35.0% | |
AGTCTCGATATATAAGTCGT+TGG | - | chr1.1:50459846-50459865 | MS.gene037997:intron | 35.0% | |
ATAAGAAGGATGAGAGTGAA+GGG | + | chr1.1:50458170-50458189 | None:intergenic | 35.0% | |
ATAAGTGTCAATGTCTTTCG+TGG | - | chr1.1:50459494-50459513 | MS.gene037997:intron | 35.0% | |
CAAATTGCAGATACACTATC+CGG | + | chr1.1:50459735-50459754 | None:intergenic | 35.0% | |
CACTTATTACAACAAACCTG+AGG | + | chr1.1:50459481-50459500 | None:intergenic | 35.0% | |
CATCCAGAAATATCATCTGA+TGG | - | chr1.1:50460189-50460208 | MS.gene037997:intron | 35.0% | |
CTGTAAAATCTTCACAAGGA+AGG | - | chr1.1:50460787-50460806 | MS.gene037997:intron | 35.0% | |
GAGTTTAACATTATGCAACC+GGG | + | chr1.1:50460475-50460494 | None:intergenic | 35.0% | |
GATTTGTGTCTCTCAAAAGA+AGG | - | chr1.1:50458879-50458898 | MS.gene037997:CDS | 35.0% | |
GGAAAATGCAAGAAACCATT+CGG | - | chr1.1:50459937-50459956 | MS.gene037997:intron | 35.0% | |
GGAATAGTAAACACATTGTC+TGG | - | chr1.1:50460627-50460646 | MS.gene037997:intron | 35.0% | |
GGCAACTTAAAGTGAATAAG+TGG | + | chr1.1:50458644-50458663 | None:intergenic | 35.0% | |
GGTCTCAAAAAATCAAGATC+TGG | - | chr1.1:50460873-50460892 | MS.gene037997:intron | 35.0% | |
GTTAGATGAAAACTTGGCTT+AGG | - | chr1.1:50458473-50458492 | MS.gene037997:CDS | 35.0% | |
! | AGGTTACTTTATACGATTGG+TGG | - | chr1.1:50458240-50458259 | MS.gene037997:CDS | 35.0% |
! | AGTCTTCGCTGAAAAAGTTT+TGG | + | chr1.1:50460685-50460704 | None:intergenic | 35.0% |
! | ATATGGTTTTCCTCCAAACT+GGG | - | chr1.1:50459644-50459663 | MS.gene037997:CDS | 35.0% |
! | ATTCCCTTTTGTGACTGAAT+GGG | + | chr1.1:50460612-50460631 | None:intergenic | 35.0% |
! | GAAGATTTTACAGAAGATGC+GGG | + | chr1.1:50460780-50460799 | None:intergenic | 35.0% |
! | GAAGTCTTTTCCTACTTCTT+TGG | - | chr1.1:50460329-50460348 | MS.gene037997:intron | 35.0% |
! | GTCTTCGCTGAAAAAGTTTT+GGG | + | chr1.1:50460684-50460703 | None:intergenic | 35.0% |
! | GTGCTATTAATGTTTGTCAG+CGG | - | chr1.1:50460046-50460065 | MS.gene037997:intron | 35.0% |
! | GTTGATGTTACTTATGGTAG+TGG | - | chr1.1:50459997-50460016 | MS.gene037997:intron | 35.0% |
! | TATATGGTTTTCCTCCAAAC+TGG | - | chr1.1:50459643-50459662 | MS.gene037997:CDS | 35.0% |
! | TATTCCCTTTTGTGACTGAA+TGG | + | chr1.1:50460613-50460632 | None:intergenic | 35.0% |
! | TTGCATTCTTTTGTACCGAA+TGG | + | chr1.1:50459955-50459974 | None:intergenic | 35.0% |
! | TTTAATTGTTGTTGCAGGTG+AGG | - | chr1.1:50459870-50459889 | MS.gene037997:intron | 35.0% |
!!! | AAAACTTTTTCAGCGAAGAC+TGG | - | chr1.1:50460684-50460703 | MS.gene037997:intron | 35.0% |
ACACCCATTCAGTCACAAAA+GGG | - | chr1.1:50460606-50460625 | MS.gene037997:intron | 40.0% | |
ACAGTTGAAACAGATGCAGT+TGG | - | chr1.1:50460732-50460751 | MS.gene037997:CDS | 40.0% | |
ACGGGACATGTCAATTAAGA+CGG | - | chr1.1:50460404-50460423 | MS.gene037997:intron | 40.0% | |
AGAAGTGGAAACTCGTGATT+CGG | - | chr1.1:50460134-50460153 | MS.gene037997:intron | 40.0% | |
AGTGAATAAGTGGAGAATCC+GGG | + | chr1.1:50458634-50458653 | None:intergenic | 40.0% | |
AGTTTGAGTGCTAACTGTGA+TGG | - | chr1.1:50459572-50459591 | MS.gene037997:CDS | 40.0% | |
CAAACTCTTGATATCTGCTG+CGG | + | chr1.1:50458738-50458757 | None:intergenic | 40.0% | |
CAATGCATTGCAATATGCAG+GGG | - | chr1.1:50458595-50458614 | MS.gene037997:CDS | 40.0% | |
CACCAAGTGCCAAAATCAAA+CGG | - | chr1.1:50458966-50458985 | MS.gene037997:CDS | 40.0% | |
GACAATGCATTGCAATATGC+AGG | - | chr1.1:50458593-50458612 | MS.gene037997:CDS | 40.0% | |
GATACAAGTCACTCGAACAA+GGG | - | chr1.1:50460810-50460829 | MS.gene037997:intron | 40.0% | |
GCATCTCTTCCAGAAAGTAA+GGG | - | chr1.1:50458303-50458322 | MS.gene037997:CDS | 40.0% | |
GTCAATGTTGTTCATGGTAG+TGG | - | chr1.1:50460432-50460451 | MS.gene037997:intron | 40.0% | |
GTTAGGTTAAAGTTCCAGCT+AGG | - | chr1.1:50458389-50458408 | MS.gene037997:CDS | 40.0% | |
TAAGAAGGATGAGAGTGAAG+GGG | + | chr1.1:50458169-50458188 | None:intergenic | 40.0% | |
TCCTACTTCTTTGGTATCAC+CGG | - | chr1.1:50460338-50460357 | MS.gene037997:intron | 40.0% | |
TCTTTATCTGGATGTGTTGC+CGG | + | chr1.1:50460528-50460547 | None:intergenic | 40.0% | |
TGAGCATAACTCACTTGGTA+GGG | - | chr1.1:50458571-50458590 | MS.gene037997:CDS | 40.0% | |
TGGCTCGTTAAATCATCTCA+AGG | - | chr1.1:50458260-50458279 | MS.gene037997:CDS | 40.0% | |
TTGTGACACTTCAGCAGAAA+TGG | - | chr1.1:50459101-50459120 | MS.gene037997:CDS | 40.0% | |
! | ATGGTTTCTTGCATTTTCCC+AGG | + | chr1.1:50459936-50459955 | None:intergenic | 40.0% |
! | CAAACGGTGCTAAATTTGCA+AGG | - | chr1.1:50458982-50459001 | MS.gene037997:CDS | 40.0% |
! | TCTGTTTCTCCAGAGTCATT+GGG | - | chr1.1:50460852-50460871 | MS.gene037997:intron | 40.0% |
! | TGGTTTCTTGCATTTTCCCA+GGG | + | chr1.1:50459935-50459954 | None:intergenic | 40.0% |
!! | AGTGGGGTTGATGTTACTTA+TGG | - | chr1.1:50459991-50460010 | MS.gene037997:intron | 40.0% |
!! | GGAAAATGGTTTTACTCCTC+AGG | - | chr1.1:50459462-50459481 | MS.gene037997:intron | 40.0% |
!! | TTCTTCTAGTTTCCGACGAA+CGG | - | chr1.1:50458128-50458147 | MS.gene037997:CDS | 40.0% |
!!! | TTTTTGAGACCCAATGACTC+TGG | + | chr1.1:50460864-50460883 | None:intergenic | 40.0% |
AAAGCCTCAAAGGAGATGAG+TGG | - | chr1.1:50459973-50459992 | MS.gene037997:intron | 45.0% | |
AAGCCTCAAAGGAGATGAGT+GGG | - | chr1.1:50459974-50459993 | MS.gene037997:intron | 45.0% | |
ACGAGTTTCCACTTCTGTTG+AGG | + | chr1.1:50460130-50460149 | None:intergenic | 45.0% | |
ACTGCAACCCTTTCTTCCAA+TGG | - | chr1.1:50458096-50458115 | MS.gene037997:CDS | 45.0% | |
AGAGCATAGCTTTCCCAGTT+TGG | + | chr1.1:50459660-50459679 | None:intergenic | 45.0% | |
AGATGCCAGAGATGGCTAAA+CGG | + | chr1.1:50458289-50458308 | None:intergenic | 45.0% | |
AGGCATTCCTCGAAGATGAA+CGG | - | chr1.1:50460385-50460404 | MS.gene037997:intron | 45.0% | |
AGTAAACACATTGTCTGGGC+AGG | - | chr1.1:50460632-50460651 | MS.gene037997:intron | 45.0% | |
ATATACCATCGGCAGTCTCA+AGG | + | chr1.1:50459402-50459421 | None:intergenic | 45.0% | |
ATCAGCTTCAGATCCTTCTC+CGG | + | chr1.1:50459691-50459710 | None:intergenic | 45.0% | |
ATGCTGAGTTAGTGGTGACA+AGG | + | chr1.1:50459082-50459101 | None:intergenic | 45.0% | |
CAGAAGAAACAGCCTGTTAC+CGG | - | chr1.1:50460498-50460517 | MS.gene037997:intron | 45.0% | |
CATGTCAATTAAGACGGGTG+AGG | - | chr1.1:50460410-50460429 | MS.gene037997:intron | 45.0% | |
CGGGACATGTCAATTAAGAC+GGG | - | chr1.1:50460405-50460424 | MS.gene037997:intron | 45.0% | |
CGTCGGAAACTAGAAGAAGT+GGG | + | chr1.1:50458126-50458145 | None:intergenic | 45.0% | |
GACACCCATTCAGTCACAAA+AGG | - | chr1.1:50460605-50460624 | MS.gene037997:intron | 45.0% | |
GCGAAAATAGACATGGTACC+AGG | - | chr1.1:50460019-50460038 | MS.gene037997:intron | 45.0% | |
GGATACAAGTCACTCGAACA+AGG | - | chr1.1:50460809-50460828 | MS.gene037997:intron | 45.0% | |
GGCATCTCTTCCAGAAAGTA+AGG | - | chr1.1:50458302-50458321 | MS.gene037997:CDS | 45.0% | |
GGTGAGGTCAATGTTGTTCA+TGG | - | chr1.1:50460426-50460445 | MS.gene037997:intron | 45.0% | |
GTCGGAAACTAGAAGAAGTG+GGG | + | chr1.1:50458125-50458144 | None:intergenic | 45.0% | |
GTGAATAAGTGGAGAATCCG+GGG | + | chr1.1:50458633-50458652 | None:intergenic | 45.0% | |
GTGAGCATAACTCACTTGGT+AGG | - | chr1.1:50458570-50458589 | MS.gene037997:CDS | 45.0% | |
GTGAGTAAACAACCGTTCGT+CGG | + | chr1.1:50458143-50458162 | None:intergenic | 45.0% | |
GTGTCAATGTCTTTCGTGGT+TGG | - | chr1.1:50459498-50459517 | MS.gene037997:intron | 45.0% | |
GTGTCACAATGCTGAGTTAG+TGG | + | chr1.1:50459090-50459109 | None:intergenic | 45.0% | |
TACACTATCCGGAACAGCAT+TGG | + | chr1.1:50459724-50459743 | None:intergenic | 45.0% | |
TATACCATCGGCAGTCTCAA+GGG | + | chr1.1:50459401-50459420 | None:intergenic | 45.0% | |
TCCGGTGATACCAAAGAAGT+AGG | + | chr1.1:50460342-50460361 | None:intergenic | 45.0% | |
TCGGAAACTAGAAGAAGTGG+GGG | + | chr1.1:50458124-50458143 | None:intergenic | 45.0% | |
TCGTCGGAAACTAGAAGAAG+TGG | + | chr1.1:50458127-50458146 | None:intergenic | 45.0% | |
TGCTGAGTTAGTGGTGACAA+GGG | + | chr1.1:50459081-50459100 | None:intergenic | 45.0% | |
TTGGAAGAAAGGGTTGCAGT+TGG | + | chr1.1:50458096-50458115 | None:intergenic | 45.0% | |
! | ACTCTTTTCCAAGGCTGGTA+AGG | + | chr1.1:50460562-50460581 | None:intergenic | 45.0% |
! | CAATGACTCTGGAGAAACAG+AGG | + | chr1.1:50460853-50460872 | None:intergenic | 45.0% |
! | CTCTGTTTCTCCAGAGTCAT+TGG | - | chr1.1:50460851-50460870 | MS.gene037997:intron | 45.0% |
! | GGTAGTGGCGAAAATAGACA+TGG | - | chr1.1:50460012-50460031 | MS.gene037997:intron | 45.0% |
! | GTGGAGATCTGGTCTTTATC+TGG | + | chr1.1:50460540-50460559 | None:intergenic | 45.0% |
! | TCCTCCATCACTCTTTTCCA+AGG | + | chr1.1:50460571-50460590 | None:intergenic | 45.0% |
!! | AGCTATGCTCTAGAATGCAC+CGG | - | chr1.1:50459669-50459688 | MS.gene037997:intron | 45.0% |
!! | ATGTTGTTCATGGTAGTGGC+AGG | - | chr1.1:50460436-50460455 | MS.gene037997:intron | 45.0% |
!! | CACCGTTTGATTTTGGCACT+TGG | + | chr1.1:50458971-50458990 | None:intergenic | 45.0% |
!!! | ACTTTTTCAGCGAAGACTGG+AGG | - | chr1.1:50460687-50460706 | MS.gene037997:intron | 45.0% |
!! | AAAAATTAAAAATAAATTAC+AGG | - | chr1.1:50459008-50459027 | MS.gene037997:CDS | 5.0% |
!! | AAAATTAAAAATAAATTACA+GGG | - | chr1.1:50459009-50459028 | MS.gene037997:CDS | 5.0% |
!!! | AAATTTTTTTTTTTTACTTT+TGG | - | chr1.1:50458801-50458820 | MS.gene037997:intron | 5.0% |
AAACTCGCACACACACTGTG+AGG | + | chr1.1:50458416-50458435 | None:intergenic | 50.0% | |
AACCCCACTCATCTCCTTTG+AGG | + | chr1.1:50459980-50459999 | None:intergenic | 50.0% | |
ACATGTCCCGTTCATCTTCG+AGG | + | chr1.1:50460395-50460414 | None:intergenic | 50.0% | |
AGCCTCAAAGGAGATGAGTG+GGG | - | chr1.1:50459975-50459994 | MS.gene037997:intron | 50.0% | |
CCAGCCTTGGAAAAGAGTGA+TGG | - | chr1.1:50460564-50460583 | MS.gene037997:intron | 50.0% | |
GAAGAAAGGGTTGCAGTTGG+AGG | + | chr1.1:50458093-50458112 | None:intergenic | 50.0% | |
GACCACGGGAGATTGCAATA+AGG | - | chr1.1:50460365-50460384 | MS.gene037997:intron | 50.0% | |
GAGCTCTACCTCAACAGAAG+TGG | - | chr1.1:50460119-50460138 | MS.gene037997:intron | 50.0% | |
GCATAGCTTTCCCAGTTTGG+AGG | + | chr1.1:50459657-50459676 | None:intergenic | 50.0% | |
GCCTTGGAAAAGAGTGATGG+AGG | - | chr1.1:50460567-50460586 | MS.gene037997:intron | 50.0% | |
GGAAACCGTTTAGCCATCTC+TGG | - | chr1.1:50458281-50458300 | MS.gene037997:CDS | 50.0% | |
GGCATTCCTCGAAGATGAAC+GGG | - | chr1.1:50460386-50460405 | MS.gene037997:intron | 50.0% | |
GGTATCACCGGATAAGACCA+CGG | - | chr1.1:50460350-50460369 | MS.gene037997:intron | 50.0% | |
GTATCACCGGATAAGACCAC+GGG | - | chr1.1:50460351-50460370 | MS.gene037997:intron | 50.0% | |
GTCGGTGAGCATAACTCACT+TGG | - | chr1.1:50458566-50458585 | MS.gene037997:CDS | 50.0% | |
TCAGGCAACACCAACGAAGT+AGG | + | chr1.1:50459907-50459926 | None:intergenic | 50.0% | |
TCTGGAAGAGATGCCAGAGA+TGG | + | chr1.1:50458297-50458316 | None:intergenic | 50.0% | |
! | CCATCACTCTTTTCCAAGGC+TGG | + | chr1.1:50460567-50460586 | None:intergenic | 50.0% |
! | CTTTTCCAAGGCTGGTAAGG+TGG | + | chr1.1:50460559-50460578 | None:intergenic | 50.0% |
! | GGAAAAGAGTGATGGAGGAC+TGG | - | chr1.1:50460572-50460591 | MS.gene037997:intron | 50.0% |
! | TGATTCGGCCAATGCTGTTC+CGG | - | chr1.1:50459713-50459732 | MS.gene037997:intron | 50.0% |
! | TGCCTTATTGCAATCTCCCG+TGG | + | chr1.1:50460370-50460389 | None:intergenic | 50.0% |
! | TTTTCCCTTGAGACTGCCGA+TGG | - | chr1.1:50459394-50459413 | MS.gene037997:intron | 50.0% |
!! | CAATCTCCCGTGGTCTTATC+CGG | + | chr1.1:50460360-50460379 | None:intergenic | 50.0% |
!! | CGGTAACAGGCTGTTTCTTC+TGG | + | chr1.1:50460500-50460519 | None:intergenic | 50.0% |
AAGGGTTGCAGTTGGAGGAG+TGG | + | chr1.1:50458088-50458107 | None:intergenic | 55.0% | |
ACACACTGTGAGGTCCTAGC+TGG | + | chr1.1:50458406-50458425 | None:intergenic | 55.0% | |
ACAGCCTGTTACCGGAGATC+CGG | - | chr1.1:50460506-50460525 | MS.gene037997:intron | 55.0% | |
AGGCTGGTAAGGTGGAGATC+TGG | + | chr1.1:50460551-50460570 | None:intergenic | 55.0% | |
CTACGATGACCTCCAGATGC+AGG | + | chr1.1:50460081-50460100 | None:intergenic | 55.0% | |
CTGCATCTGGAGGTCATCGT+AGG | - | chr1.1:50460079-50460098 | MS.gene037997:intron | 55.0% | |
GATCTCCACCTTACCAGCCT+TGG | - | chr1.1:50460551-50460570 | MS.gene037997:intron | 55.0% | |
GCAGGAATAGACGTAGTGCC+CGG | - | chr1.1:50460454-50460473 | MS.gene037997:intron | 55.0% | |
TGGATGTGTTGCCGGATCTC+CGG | + | chr1.1:50460520-50460539 | None:intergenic | 55.0% | |
!! | AGAAGAAGTGGGGGTGCCAT+TGG | + | chr1.1:50458115-50458134 | None:intergenic | 55.0% |
!! | GCTCTAGAATGCACCGGAGA+AGG | - | chr1.1:50459675-50459694 | MS.gene037997:intron | 55.0% |
!! | GGGGGTGCCATTGGAAGAAA+GGG | + | chr1.1:50458106-50458125 | None:intergenic | 55.0% |
!! | TGGGGGTGCCATTGGAAGAA+AGG | + | chr1.1:50458107-50458126 | None:intergenic | 55.0% |
!! | TTCGTTGGTGTTGCCTGACG+AGG | - | chr1.1:50459909-50459928 | MS.gene037997:intron | 55.0% |
AAGCAGCAGCCTGCATCTGG+AGG | - | chr1.1:50460069-50460088 | MS.gene037997:intron | 60.0% | |
AGGGGCTGAGATTCGAACCC+CGG | - | chr1.1:50458613-50458632 | MS.gene037997:CDS | 60.0% | |
GAGCAGCGCACGCTGGAAAA+TGG | - | chr1.1:50459448-50459467 | MS.gene037997:intron | 60.0% | |
GTTGCCGGATCTCCGGTAAC+AGG | + | chr1.1:50460513-50460532 | None:intergenic | 60.0% | |
! | CATTTTCCCAGGGCCTCGTC+AGG | + | chr1.1:50459925-50459944 | None:intergenic | 60.0% |
CATGAACGAGCAGCGCACGC+TGG | - | chr1.1:50459441-50459460 | MS.gene037997:intron | 65.0% | |
CGGAAGCAGCAGCCTGCATC+TGG | - | chr1.1:50460066-50460085 | MS.gene037997:intron | 65.0% | |
GTGTTGCCTGACGAGGCCCT+GGG | - | chr1.1:50459916-50459935 | MS.gene037997:intron | 65.0% | |
! | GGTGTTGCCTGACGAGGCCC+TGG | - | chr1.1:50459915-50459934 | MS.gene037997:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.1 | gene | 50458075 | 50460950 | 50458075 | ID=MS.gene037997 |
chr1.1 | mRNA | 50458075 | 50460950 | 50458075 | ID=MS.gene037997.t1;Parent=MS.gene037997 |
chr1.1 | exon | 50460876 | 50460950 | 50460876 | ID=MS.gene037997.t1.exon1;Parent=MS.gene037997.t1 |
chr1.1 | CDS | 50460876 | 50460950 | 50460876 | ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1 |
chr1.1 | exon | 50460707 | 50460783 | 50460707 | ID=MS.gene037997.t1.exon2;Parent=MS.gene037997.t1 |
chr1.1 | CDS | 50460707 | 50460783 | 50460707 | ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1 |
chr1.1 | exon | 50459542 | 50459686 | 50459542 | ID=MS.gene037997.t1.exon3;Parent=MS.gene037997.t1 |
chr1.1 | CDS | 50459542 | 50459686 | 50459542 | ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1 |
chr1.1 | exon | 50459251 | 50459398 | 50459251 | ID=MS.gene037997.t1.exon4;Parent=MS.gene037997.t1 |
chr1.1 | CDS | 50459251 | 50459398 | 50459251 | ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1 |
chr1.1 | exon | 50458815 | 50459138 | 50458815 | ID=MS.gene037997.t1.exon5;Parent=MS.gene037997.t1 |
chr1.1 | CDS | 50458815 | 50459138 | 50458815 | ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1 |
chr1.1 | exon | 50458075 | 50458703 | 50458075 | ID=MS.gene037997.t1.exon6;Parent=MS.gene037997.t1 |
chr1.1 | CDS | 50458075 | 50458703 | 50458075 | ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1 |
Gene Sequence |
Protein sequence |