AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037997


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037997.t1 MTR_1g069015 90.487 452 41 1 1 450 1 452 0.0 826
MS.gene037997.t1 MTR_1g069020 65.839 322 98 3 129 450 246 555 1.06e-124 375
MS.gene037997.t1 MTR_1g069020 59.451 328 117 4 22 344 26 342 4.93e-122 369
MS.gene037997.t1 MTR_7g039520 35.000 140 81 5 1 137 1 133 6.81e-18 85.1
MS.gene037997.t1 MTR_5g040080 35.000 140 81 5 1 137 1 133 8.13e-18 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037997.t1 AT5G02520 42.857 133 70 4 18 146 11 141 8.02e-29 120
MS.gene037997.t1 AT5G02520 42.857 133 70 4 18 146 11 141 1.11e-28 119
MS.gene037997.t1 AT5G02520 43.284 134 69 5 18 146 11 142 5.88e-28 117
MS.gene037997.t1 AT1G58210 39.823 113 64 2 3 115 45 153 8.97e-17 80.9

Find 108 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACCATCAGATGATATTTC+TGG 0.152483 1.1:+50458811 None:intergenic
CTCTGTTTCTCCAGAGTCAT+TGG 0.218790 1.1:-50458152 MS.gene037997:CDS
CTTCATGAATTGACAATGAT+TGG 0.243509 1.1:+50458099 None:intergenic
CGGTAACAGGCTGTTTCTTC+TGG 0.258466 1.1:+50458506 None:intergenic
GAGGTTGTTATAAGAGAAAA+AGG 0.309998 1.1:-50458297 MS.gene037997:CDS
TGTCAAGAAATCTTGTTTGA+TGG 0.311615 1.1:-50459250 MS.gene037997:intron
CGGAAGCAGCAGCCTGCATC+TGG 0.314800 1.1:-50458937 MS.gene037997:CDS
TCTTTATCTGGATGTGTTGC+CGG 0.325220 1.1:+50458478 None:intergenic
GAGCAGCGCACGCTGGAAAA+TGG 0.336004 1.1:-50459555 MS.gene037997:CDS
AGAGCATAGCTTTCCCAGTT+TGG 0.337878 1.1:+50459346 None:intergenic
TGATTCGGCCAATGCTGTTC+CGG 0.339045 1.1:-50459290 MS.gene037997:CDS
GGAATAGTAAACACATTGTC+TGG 0.341105 1.1:-50458376 MS.gene037997:CDS
GTGGAGATCTGGTCTTTATC+TGG 0.363337 1.1:+50458466 None:intergenic
AGTGGGGTTGATGTTACTTA+TGG 0.365193 1.1:-50459012 MS.gene037997:CDS
CAGAAGAAACAGCCTGTTAC+CGG 0.388877 1.1:-50458505 MS.gene037997:CDS
AGAGTTTAACATTATGCAAC+CGG 0.398439 1.1:+50458530 None:intergenic
AACCCCACTCATCTCCTTTG+AGG 0.416310 1.1:+50459026 None:intergenic
GGTGTTGCCTGACGAGGCCC+TGG 0.428575 1.1:-50459088 MS.gene037997:CDS
TCTGTTTCTCCAGAGTCATT+GGG 0.438436 1.1:-50458151 MS.gene037997:CDS
CAATCTCCCGTGGTCTTATC+CGG 0.440181 1.1:+50458646 None:intergenic
TCCTACTTCTTTGGTATCAC+CGG 0.443039 1.1:-50458665 MS.gene037997:CDS
GAAGAAAGGGTTGCAGTTGG+AGG 0.446563 1.1:+50460913 None:intergenic
GGCATTCCTCGAAGATGAAC+GGG 0.446700 1.1:-50458617 MS.gene037997:CDS
GGTGAGGTCAATGTTGTTCA+TGG 0.450542 1.1:-50458577 MS.gene037997:CDS
TCTAGGTTACTTTATACGAT+TGG 0.451256 1.1:-50460766 MS.gene037997:intron
TTCTTCTAGTTTCCGACGAA+CGG 0.453700 1.1:-50460875 MS.gene037997:intron
GACACCCATTCAGTCACAAA+AGG 0.454994 1.1:-50458398 MS.gene037997:CDS
GTTGCCGGATCTCCGGTAAC+AGG 0.455494 1.1:+50458493 None:intergenic
ACATGTCCCGTTCATCTTCG+AGG 0.466823 1.1:+50458611 None:intergenic
CAATCATTGTCAATTCATGA+AGG 0.471470 1.1:-50458098 MS.gene037997:CDS
AGGCTGGTAAGGTGGAGATC+TGG 0.472582 1.1:+50458455 None:intergenic
GATCTCCACCTTACCAGCCT+TGG 0.478185 1.1:-50458452 MS.gene037997:CDS
ACAGCCTGTTACCGGAGATC+CGG 0.478659 1.1:-50458497 MS.gene037997:CDS
GACCACGGGAGATTGCAATA+AGG 0.479142 1.1:-50458638 MS.gene037997:CDS
TGGATGTGTTGCCGGATCTC+CGG 0.481700 1.1:+50458486 None:intergenic
AGGTTACTTTATACGATTGG+TGG 0.484584 1.1:-50460763 MS.gene037997:CDS
ATCTGAAGCTGATATTGATT+CGG 0.486466 1.1:-50459305 MS.gene037997:CDS
AAGGGTTGCAGTTGGAGGAG+TGG 0.499037 1.1:+50460918 None:intergenic
GCTCTAGAATGCACCGGAGA+AGG 0.500619 1.1:-50459328 MS.gene037997:CDS
AAATTTCATTCCTACTTCGT+TGG 0.500725 1.1:-50459109 MS.gene037997:CDS
GGAAACCGTTTAGCCATCTC+TGG 0.503556 1.1:-50460722 MS.gene037997:CDS
GTCAATGTTGTTCATGGTAG+TGG 0.510692 1.1:-50458571 MS.gene037997:CDS
AGAAGTGGAAACTCGTGATT+CGG 0.511753 1.1:-50458869 MS.gene037997:CDS
CTGTAAAATCTTCACAAGGA+AGG 0.513105 1.1:-50458216 MS.gene037997:CDS
TGTAAAATCTTCACAAGGAA+GGG 0.521070 1.1:-50458215 MS.gene037997:CDS
TGGTATATATGTTATCACTA+GGG 0.526872 1.1:-50459589 MS.gene037997:CDS
TACACTATCCGGAACAGCAT+TGG 0.528438 1.1:+50459282 None:intergenic
CTACGATGACCTCCAGATGC+AGG 0.528905 1.1:+50458925 None:intergenic
ACACCCATTCAGTCACAAAA+GGG 0.532185 1.1:-50458397 MS.gene037997:CDS
GTTGATGTTACTTATGGTAG+TGG 0.532246 1.1:-50459006 MS.gene037997:CDS
GGAAAATGCAAGAAACCATT+CGG 0.536222 1.1:-50459066 MS.gene037997:CDS
AGATGCCAGAGATGGCTAAA+CGG 0.536792 1.1:+50460717 None:intergenic
AAAAGAATGCAAAGCCTCAA+AGG 0.537351 1.1:-50459040 MS.gene037997:CDS
CAAATTGCAGATACACTATC+CGG 0.539970 1.1:+50459271 None:intergenic
AACATTAATAGCACGTAACC+TGG 0.544388 1.1:+50458966 None:intergenic
ACTGCAACCCTTTCTTCCAA+TGG 0.545228 1.1:-50460907 MS.gene037997:CDS
ATATACCATCGGCAGTCTCA+AGG 0.545294 1.1:+50459604 None:intergenic
GAGCTCTACCTCAACAGAAG+TGG 0.545818 1.1:-50458884 MS.gene037997:CDS
AGTAAACACATTGTCTGGGC+AGG 0.549663 1.1:-50458371 MS.gene037997:CDS
TTCGTTGGTGTTGCCTGACG+AGG 0.551013 1.1:-50459094 MS.gene037997:CDS
ATGTTGTTCATGGTAGTGGC+AGG 0.553357 1.1:-50458567 MS.gene037997:CDS
ATCAGCTTCAGATCCTTCTC+CGG 0.554639 1.1:+50459315 None:intergenic
TTGGAAGAAAGGGTTGCAGT+TGG 0.555270 1.1:+50460910 None:intergenic
ATGGTATATATGTTATCACT+AGG 0.556691 1.1:-50459590 MS.gene037997:CDS
GCGAAAATAGACATGGTACC+AGG 0.560344 1.1:-50458984 MS.gene037997:CDS
AAGCCTCAAAGGAGATGAGT+GGG 0.564158 1.1:-50459029 MS.gene037997:CDS
TCGTCGGAAACTAGAAGAAG+TGG 0.565214 1.1:+50460879 None:intergenic
GCATAGCTTTCCCAGTTTGG+AGG 0.565501 1.1:+50459349 None:intergenic
AAGCAGCAGCCTGCATCTGG+AGG 0.566088 1.1:-50458934 MS.gene037997:CDS
GCAGGAATAGACGTAGTGCC+CGG 0.566956 1.1:-50458549 MS.gene037997:CDS
TCAGGCAACACCAACGAAGT+AGG 0.568738 1.1:+50459099 None:intergenic
GGAAAAGAGTGATGGAGGAC+TGG 0.572017 1.1:-50458431 MS.gene037997:CDS
AGGCATTCCTCGAAGATGAA+CGG 0.572872 1.1:-50458618 MS.gene037997:CDS
TCCGGTGATACCAAAGAAGT+AGG 0.573504 1.1:+50458664 None:intergenic
GGATACAAGTCACTCGAACA+AGG 0.576987 1.1:-50458194 MS.gene037997:CDS
ACGAGTTTCCACTTCTGTTG+AGG 0.577453 1.1:+50458876 None:intergenic
CATGAACGAGCAGCGCACGC+TGG 0.579334 1.1:-50459562 MS.gene037997:CDS
GGTATATATGTTATCACTAG+GGG 0.588021 1.1:-50459588 MS.gene037997:CDS
CATCCAGAAATATCATCTGA+TGG 0.590199 1.1:-50458814 MS.gene037997:intron
AGCTATGCTCTAGAATGCAC+CGG 0.591217 1.1:-50459334 MS.gene037997:CDS
ACGGGACATGTCAATTAAGA+CGG 0.591957 1.1:-50458599 MS.gene037997:CDS
CGGGACATGTCAATTAAGAC+GGG 0.595490 1.1:-50458598 MS.gene037997:CDS
CGTCGGAAACTAGAAGAAGT+GGG 0.595818 1.1:+50460880 None:intergenic
TCTGGAAGAGATGCCAGAGA+TGG 0.599841 1.1:+50460709 None:intergenic
TGCCTTATTGCAATCTCCCG+TGG 0.601695 1.1:+50458636 None:intergenic
GTGAGTAAACAACCGTTCGT+CGG 0.603870 1.1:+50460863 None:intergenic
TATACCATCGGCAGTCTCAA+GGG 0.605137 1.1:+50459605 None:intergenic
GAATAGTAAACACATTGTCT+GGG 0.607705 1.1:-50458375 MS.gene037997:CDS
CCAGCCTTGGAAAAGAGTGA+TGG 0.608271 1.1:-50458439 MS.gene037997:CDS
GATACAAGTCACTCGAACAA+GGG 0.609110 1.1:-50458193 MS.gene037997:CDS
ACAGTTGAAACAGATGCAGT+TGG 0.619629 1.1:-50458271 MS.gene037997:CDS
CTGCATCTGGAGGTCATCGT+AGG 0.620919 1.1:-50458924 MS.gene037997:CDS
GCCTTGGAAAAGAGTGATGG+AGG 0.621071 1.1:-50458436 MS.gene037997:CDS
AGTGATAACATATATACCAT+CGG 0.622033 1.1:+50459593 None:intergenic
GTATCACCGGATAAGACCAC+GGG 0.626364 1.1:-50458652 MS.gene037997:CDS
GTGTTGCCTGACGAGGCCCT+GGG 0.635492 1.1:-50459087 MS.gene037997:CDS
TGGCTCGTTAAATCATCTCA+AGG 0.637214 1.1:-50460743 MS.gene037997:CDS
CATGTCAATTAAGACGGGTG+AGG 0.637260 1.1:-50458593 MS.gene037997:CDS
GAGTTTAACATTATGCAACC+GGG 0.641017 1.1:+50458531 None:intergenic
GTCGGAAACTAGAAGAAGTG+GGG 0.641310 1.1:+50460881 None:intergenic
AAAGCCTCAAAGGAGATGAG+TGG 0.652543 1.1:-50459030 MS.gene037997:CDS
CAATGACTCTGGAGAAACAG+AGG 0.661940 1.1:+50458153 None:intergenic
GTGCTATTAATGTTTGTCAG+CGG 0.670687 1.1:-50458957 MS.gene037997:CDS
GGTATCACCGGATAAGACCA+CGG 0.680385 1.1:-50458653 MS.gene037997:CDS
TCTTCTGTAAAATCTTCACA+AGG 0.686047 1.1:-50458220 MS.gene037997:CDS
TCGGAAACTAGAAGAAGTGG+GGG 0.688243 1.1:+50460882 None:intergenic
GGTAGTGGCGAAAATAGACA+TGG 0.702887 1.1:-50458991 MS.gene037997:CDS
AGCCTCAAAGGAGATGAGTG+GGG 0.721063 1.1:-50459028 MS.gene037997:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAAAAATATTTGTAGA+AGG + chr1.1:50458769-50458788 None:intergenic 10.0%
!! ATTATTAAAACAAAACAATA+AGG + chr1.1:50458828-50458847 None:intergenic 10.0%
!!! ATTTCAAAGAATTTTTTATA+TGG - chr1.1:50459627-50459646 MS.gene037997:CDS 10.0%
!! ATGATAATACATTAAACAAA+TGG + chr1.1:50460266-50460285 None:intergenic 15.0%
!! GTAAAAAAAAAAAATTTGCA+AGG + chr1.1:50458798-50458817 None:intergenic 15.0%
!! AAAAAGAAAAATTGTTAAGC+AGG + chr1.1:50458665-50458684 None:intergenic 20.0%
!! ATACTTTATGTTGTAAATCA+GGG - chr1.1:50459318-50459337 MS.gene037997:CDS 20.0%
!!! ACATCATATCTTTTGATAAT+AGG + chr1.1:50459373-50459392 None:intergenic 20.0%
!!! GGTTTAATATTTTTTCTCTT+AGG + chr1.1:50460759-50460778 None:intergenic 20.0%
!!! TAAAATTATCATTTTCGAGT+CGG - chr1.1:50458548-50458567 MS.gene037997:CDS 20.0%
!!! TTTTAAGTTAGATGAAAACT+TGG - chr1.1:50458467-50458486 MS.gene037997:CDS 20.0%
!!! TTTTTTTTCTTTTCCTTTCT+AGG - chr1.1:50458220-50458239 MS.gene037997:CDS 20.0%
! AAACTCAACGTCATAAAATA+AGG + chr1.1:50459557-50459576 None:intergenic 25.0%
! AAATCTGTTCATATTGAAGT+TGG + chr1.1:50458927-50458946 None:intergenic 25.0%
! ACTAGCATTTATACATGAAA+AGG + chr1.1:50459207-50459226 None:intergenic 25.0%
! AGGACTAAAATGAATATTAG+AGG - chr1.1:50458899-50458918 MS.gene037997:CDS 25.0%
! AGGTTGTTATAAGAGAAAAA+GGG - chr1.1:50460707-50460726 MS.gene037997:CDS 25.0%
! AGTGATAACATATATACCAT+CGG + chr1.1:50459413-50459432 None:intergenic 25.0%
! ATAAAGCTTCAATATGCAAA+CGG - chr1.1:50458709-50458728 MS.gene037997:intron 25.0%
! ATGGTATATATGTTATCACT+AGG - chr1.1:50459413-50459432 MS.gene037997:intron 25.0%
! CATACTTTATGTTGTAAATC+AGG - chr1.1:50459317-50459336 MS.gene037997:CDS 25.0%
! GGACTAAAATGAATATTAGA+GGG - chr1.1:50458900-50458919 MS.gene037997:CDS 25.0%
! TGATAGAGATAAGAATAAGA+AGG + chr1.1:50458184-50458203 None:intergenic 25.0%
! TGGTATATATGTTATCACTA+GGG - chr1.1:50459414-50459433 MS.gene037997:intron 25.0%
! TTGAAATCTAACCATAAAGT+AGG + chr1.1:50459614-50459633 None:intergenic 25.0%
!! TATTTTACCATTGTCAAACA+TGG + chr1.1:50458692-50458711 None:intergenic 25.0%
!!! ATATCTTTTGATAATAGGAG+TGG + chr1.1:50459368-50459387 None:intergenic 25.0%
!!! TGTTTTTTTTGCCTACTTTA+TGG - chr1.1:50459600-50459619 MS.gene037997:CDS 25.0%
!!! TTGTTTGATGGTAAGTATTT+TGG - chr1.1:50459765-50459784 MS.gene037997:intron 25.0%
!!! TTTTTTACCATGTTTGACAA+TGG - chr1.1:50458682-50458701 MS.gene037997:CDS 25.0%
AAATTTCATTCCTACTTCGT+TGG - chr1.1:50459894-50459913 MS.gene037997:intron 30.0%
AGAGTTTAACATTATGCAAC+CGG + chr1.1:50460476-50460495 None:intergenic 30.0%
CAATCATTGTCAATTCATGA+AGG - chr1.1:50460905-50460924 MS.gene037997:CDS 30.0%
CTCTCAATTACTATCATAAG+AGG - chr1.1:50459272-50459291 MS.gene037997:CDS 30.0%
CTTCATGAATTGACAATGAT+TGG + chr1.1:50460907-50460926 None:intergenic 30.0%
GAATAGTAAACACATTGTCT+GGG - chr1.1:50460628-50460647 MS.gene037997:intron 30.0%
GAGGTTGTTATAAGAGAAAA+AGG - chr1.1:50460706-50460725 MS.gene037997:intron 30.0%
GGTATATATGTTATCACTAG+GGG - chr1.1:50459415-50459434 MS.gene037997:intron 30.0%
TAGCTCATGTCTAAATTGTT+AGG - chr1.1:50458372-50458391 MS.gene037997:CDS 30.0%
TCGTATAAAGTAACCTAGAA+AGG + chr1.1:50458236-50458255 None:intergenic 30.0%
TCTTCTGTAAAATCTTCACA+AGG - chr1.1:50460783-50460802 MS.gene037997:intron 30.0%
TGTAAAATCTTCACAAGGAA+GGG - chr1.1:50460788-50460807 MS.gene037997:intron 30.0%
TTACCATCAGATGATATTTC+TGG + chr1.1:50460195-50460214 None:intergenic 30.0%
! ATCTGAAGCTGATATTGATT+CGG - chr1.1:50459698-50459717 MS.gene037997:intron 30.0%
! CAATATGAACAGATTTTGCA+AGG - chr1.1:50458931-50458950 MS.gene037997:CDS 30.0%
! TCTAGGTTACTTTATACGAT+TGG - chr1.1:50458237-50458256 MS.gene037997:CDS 30.0%
! TGAAGATTTTACAGAAGATG+CGG + chr1.1:50460781-50460800 None:intergenic 30.0%
! TGTCAAGAAATCTTGTTTGA+TGG - chr1.1:50459753-50459772 MS.gene037997:intron 30.0%
!! AATTTAGCACCGTTTGATTT+TGG + chr1.1:50458978-50458997 None:intergenic 30.0%
!! GTCAAAACATTTCTAAGACA+TGG + chr1.1:50459814-50459833 None:intergenic 30.0%
!!! GTAGAGCTCTGTTTTTTATT+TGG + chr1.1:50460108-50460127 None:intergenic 30.0%
!!! TGAAAAAGTTTTGGGAATTC+TGG + chr1.1:50460676-50460695 None:intergenic 30.0%
!!! TTGGTTTTAATTGTTGTTGC+AGG - chr1.1:50459865-50459884 MS.gene037997:intron 30.0%
AAAAGAATGCAAAGCCTCAA+AGG - chr1.1:50459963-50459982 MS.gene037997:intron 35.0%
AACATTAATAGCACGTAACC+TGG + chr1.1:50460040-50460059 None:intergenic 35.0%
AAGTGAAAACCCTTACTTTC+TGG + chr1.1:50458315-50458334 None:intergenic 35.0%
AAGTGAATAAGTGGAGAATC+CGG + chr1.1:50458635-50458654 None:intergenic 35.0%
AATAAGAAGGATGAGAGTGA+AGG + chr1.1:50458171-50458190 None:intergenic 35.0%
ACAATGCATTGCAATATGCA+GGG - chr1.1:50458594-50458613 MS.gene037997:CDS 35.0%
ACTAACAGTTAGCAGTTTGT+TGG - chr1.1:50459126-50459145 MS.gene037997:intron 35.0%
AGTCTCGATATATAAGTCGT+TGG - chr1.1:50459846-50459865 MS.gene037997:intron 35.0%
ATAAGAAGGATGAGAGTGAA+GGG + chr1.1:50458170-50458189 None:intergenic 35.0%
ATAAGTGTCAATGTCTTTCG+TGG - chr1.1:50459494-50459513 MS.gene037997:intron 35.0%
CAAATTGCAGATACACTATC+CGG + chr1.1:50459735-50459754 None:intergenic 35.0%
CACTTATTACAACAAACCTG+AGG + chr1.1:50459481-50459500 None:intergenic 35.0%
CATCCAGAAATATCATCTGA+TGG - chr1.1:50460189-50460208 MS.gene037997:intron 35.0%
CTGTAAAATCTTCACAAGGA+AGG - chr1.1:50460787-50460806 MS.gene037997:intron 35.0%
GAGTTTAACATTATGCAACC+GGG + chr1.1:50460475-50460494 None:intergenic 35.0%
GATTTGTGTCTCTCAAAAGA+AGG - chr1.1:50458879-50458898 MS.gene037997:CDS 35.0%
GGAAAATGCAAGAAACCATT+CGG - chr1.1:50459937-50459956 MS.gene037997:intron 35.0%
GGAATAGTAAACACATTGTC+TGG - chr1.1:50460627-50460646 MS.gene037997:intron 35.0%
GGCAACTTAAAGTGAATAAG+TGG + chr1.1:50458644-50458663 None:intergenic 35.0%
GGTCTCAAAAAATCAAGATC+TGG - chr1.1:50460873-50460892 MS.gene037997:intron 35.0%
GTTAGATGAAAACTTGGCTT+AGG - chr1.1:50458473-50458492 MS.gene037997:CDS 35.0%
! AGGTTACTTTATACGATTGG+TGG - chr1.1:50458240-50458259 MS.gene037997:CDS 35.0%
! AGTCTTCGCTGAAAAAGTTT+TGG + chr1.1:50460685-50460704 None:intergenic 35.0%
! ATATGGTTTTCCTCCAAACT+GGG - chr1.1:50459644-50459663 MS.gene037997:CDS 35.0%
! ATTCCCTTTTGTGACTGAAT+GGG + chr1.1:50460612-50460631 None:intergenic 35.0%
! GAAGATTTTACAGAAGATGC+GGG + chr1.1:50460780-50460799 None:intergenic 35.0%
! GAAGTCTTTTCCTACTTCTT+TGG - chr1.1:50460329-50460348 MS.gene037997:intron 35.0%
! GTCTTCGCTGAAAAAGTTTT+GGG + chr1.1:50460684-50460703 None:intergenic 35.0%
! GTGCTATTAATGTTTGTCAG+CGG - chr1.1:50460046-50460065 MS.gene037997:intron 35.0%
! GTTGATGTTACTTATGGTAG+TGG - chr1.1:50459997-50460016 MS.gene037997:intron 35.0%
! TATATGGTTTTCCTCCAAAC+TGG - chr1.1:50459643-50459662 MS.gene037997:CDS 35.0%
! TATTCCCTTTTGTGACTGAA+TGG + chr1.1:50460613-50460632 None:intergenic 35.0%
! TTGCATTCTTTTGTACCGAA+TGG + chr1.1:50459955-50459974 None:intergenic 35.0%
! TTTAATTGTTGTTGCAGGTG+AGG - chr1.1:50459870-50459889 MS.gene037997:intron 35.0%
!!! AAAACTTTTTCAGCGAAGAC+TGG - chr1.1:50460684-50460703 MS.gene037997:intron 35.0%
ACACCCATTCAGTCACAAAA+GGG - chr1.1:50460606-50460625 MS.gene037997:intron 40.0%
ACAGTTGAAACAGATGCAGT+TGG - chr1.1:50460732-50460751 MS.gene037997:CDS 40.0%
ACGGGACATGTCAATTAAGA+CGG - chr1.1:50460404-50460423 MS.gene037997:intron 40.0%
AGAAGTGGAAACTCGTGATT+CGG - chr1.1:50460134-50460153 MS.gene037997:intron 40.0%
AGTGAATAAGTGGAGAATCC+GGG + chr1.1:50458634-50458653 None:intergenic 40.0%
AGTTTGAGTGCTAACTGTGA+TGG - chr1.1:50459572-50459591 MS.gene037997:CDS 40.0%
CAAACTCTTGATATCTGCTG+CGG + chr1.1:50458738-50458757 None:intergenic 40.0%
CAATGCATTGCAATATGCAG+GGG - chr1.1:50458595-50458614 MS.gene037997:CDS 40.0%
CACCAAGTGCCAAAATCAAA+CGG - chr1.1:50458966-50458985 MS.gene037997:CDS 40.0%
GACAATGCATTGCAATATGC+AGG - chr1.1:50458593-50458612 MS.gene037997:CDS 40.0%
GATACAAGTCACTCGAACAA+GGG - chr1.1:50460810-50460829 MS.gene037997:intron 40.0%
GCATCTCTTCCAGAAAGTAA+GGG - chr1.1:50458303-50458322 MS.gene037997:CDS 40.0%
GTCAATGTTGTTCATGGTAG+TGG - chr1.1:50460432-50460451 MS.gene037997:intron 40.0%
GTTAGGTTAAAGTTCCAGCT+AGG - chr1.1:50458389-50458408 MS.gene037997:CDS 40.0%
TAAGAAGGATGAGAGTGAAG+GGG + chr1.1:50458169-50458188 None:intergenic 40.0%
TCCTACTTCTTTGGTATCAC+CGG - chr1.1:50460338-50460357 MS.gene037997:intron 40.0%
TCTTTATCTGGATGTGTTGC+CGG + chr1.1:50460528-50460547 None:intergenic 40.0%
TGAGCATAACTCACTTGGTA+GGG - chr1.1:50458571-50458590 MS.gene037997:CDS 40.0%
TGGCTCGTTAAATCATCTCA+AGG - chr1.1:50458260-50458279 MS.gene037997:CDS 40.0%
TTGTGACACTTCAGCAGAAA+TGG - chr1.1:50459101-50459120 MS.gene037997:CDS 40.0%
! ATGGTTTCTTGCATTTTCCC+AGG + chr1.1:50459936-50459955 None:intergenic 40.0%
! CAAACGGTGCTAAATTTGCA+AGG - chr1.1:50458982-50459001 MS.gene037997:CDS 40.0%
! TCTGTTTCTCCAGAGTCATT+GGG - chr1.1:50460852-50460871 MS.gene037997:intron 40.0%
! TGGTTTCTTGCATTTTCCCA+GGG + chr1.1:50459935-50459954 None:intergenic 40.0%
!! AGTGGGGTTGATGTTACTTA+TGG - chr1.1:50459991-50460010 MS.gene037997:intron 40.0%
!! GGAAAATGGTTTTACTCCTC+AGG - chr1.1:50459462-50459481 MS.gene037997:intron 40.0%
!! TTCTTCTAGTTTCCGACGAA+CGG - chr1.1:50458128-50458147 MS.gene037997:CDS 40.0%
!!! TTTTTGAGACCCAATGACTC+TGG + chr1.1:50460864-50460883 None:intergenic 40.0%
AAAGCCTCAAAGGAGATGAG+TGG - chr1.1:50459973-50459992 MS.gene037997:intron 45.0%
AAGCCTCAAAGGAGATGAGT+GGG - chr1.1:50459974-50459993 MS.gene037997:intron 45.0%
ACGAGTTTCCACTTCTGTTG+AGG + chr1.1:50460130-50460149 None:intergenic 45.0%
ACTGCAACCCTTTCTTCCAA+TGG - chr1.1:50458096-50458115 MS.gene037997:CDS 45.0%
AGAGCATAGCTTTCCCAGTT+TGG + chr1.1:50459660-50459679 None:intergenic 45.0%
AGATGCCAGAGATGGCTAAA+CGG + chr1.1:50458289-50458308 None:intergenic 45.0%
AGGCATTCCTCGAAGATGAA+CGG - chr1.1:50460385-50460404 MS.gene037997:intron 45.0%
AGTAAACACATTGTCTGGGC+AGG - chr1.1:50460632-50460651 MS.gene037997:intron 45.0%
ATATACCATCGGCAGTCTCA+AGG + chr1.1:50459402-50459421 None:intergenic 45.0%
ATCAGCTTCAGATCCTTCTC+CGG + chr1.1:50459691-50459710 None:intergenic 45.0%
ATGCTGAGTTAGTGGTGACA+AGG + chr1.1:50459082-50459101 None:intergenic 45.0%
CAGAAGAAACAGCCTGTTAC+CGG - chr1.1:50460498-50460517 MS.gene037997:intron 45.0%
CATGTCAATTAAGACGGGTG+AGG - chr1.1:50460410-50460429 MS.gene037997:intron 45.0%
CGGGACATGTCAATTAAGAC+GGG - chr1.1:50460405-50460424 MS.gene037997:intron 45.0%
CGTCGGAAACTAGAAGAAGT+GGG + chr1.1:50458126-50458145 None:intergenic 45.0%
GACACCCATTCAGTCACAAA+AGG - chr1.1:50460605-50460624 MS.gene037997:intron 45.0%
GCGAAAATAGACATGGTACC+AGG - chr1.1:50460019-50460038 MS.gene037997:intron 45.0%
GGATACAAGTCACTCGAACA+AGG - chr1.1:50460809-50460828 MS.gene037997:intron 45.0%
GGCATCTCTTCCAGAAAGTA+AGG - chr1.1:50458302-50458321 MS.gene037997:CDS 45.0%
GGTGAGGTCAATGTTGTTCA+TGG - chr1.1:50460426-50460445 MS.gene037997:intron 45.0%
GTCGGAAACTAGAAGAAGTG+GGG + chr1.1:50458125-50458144 None:intergenic 45.0%
GTGAATAAGTGGAGAATCCG+GGG + chr1.1:50458633-50458652 None:intergenic 45.0%
GTGAGCATAACTCACTTGGT+AGG - chr1.1:50458570-50458589 MS.gene037997:CDS 45.0%
GTGAGTAAACAACCGTTCGT+CGG + chr1.1:50458143-50458162 None:intergenic 45.0%
GTGTCAATGTCTTTCGTGGT+TGG - chr1.1:50459498-50459517 MS.gene037997:intron 45.0%
GTGTCACAATGCTGAGTTAG+TGG + chr1.1:50459090-50459109 None:intergenic 45.0%
TACACTATCCGGAACAGCAT+TGG + chr1.1:50459724-50459743 None:intergenic 45.0%
TATACCATCGGCAGTCTCAA+GGG + chr1.1:50459401-50459420 None:intergenic 45.0%
TCCGGTGATACCAAAGAAGT+AGG + chr1.1:50460342-50460361 None:intergenic 45.0%
TCGGAAACTAGAAGAAGTGG+GGG + chr1.1:50458124-50458143 None:intergenic 45.0%
TCGTCGGAAACTAGAAGAAG+TGG + chr1.1:50458127-50458146 None:intergenic 45.0%
TGCTGAGTTAGTGGTGACAA+GGG + chr1.1:50459081-50459100 None:intergenic 45.0%
TTGGAAGAAAGGGTTGCAGT+TGG + chr1.1:50458096-50458115 None:intergenic 45.0%
! ACTCTTTTCCAAGGCTGGTA+AGG + chr1.1:50460562-50460581 None:intergenic 45.0%
! CAATGACTCTGGAGAAACAG+AGG + chr1.1:50460853-50460872 None:intergenic 45.0%
! CTCTGTTTCTCCAGAGTCAT+TGG - chr1.1:50460851-50460870 MS.gene037997:intron 45.0%
! GGTAGTGGCGAAAATAGACA+TGG - chr1.1:50460012-50460031 MS.gene037997:intron 45.0%
! GTGGAGATCTGGTCTTTATC+TGG + chr1.1:50460540-50460559 None:intergenic 45.0%
! TCCTCCATCACTCTTTTCCA+AGG + chr1.1:50460571-50460590 None:intergenic 45.0%
!! AGCTATGCTCTAGAATGCAC+CGG - chr1.1:50459669-50459688 MS.gene037997:intron 45.0%
!! ATGTTGTTCATGGTAGTGGC+AGG - chr1.1:50460436-50460455 MS.gene037997:intron 45.0%
!! CACCGTTTGATTTTGGCACT+TGG + chr1.1:50458971-50458990 None:intergenic 45.0%
!!! ACTTTTTCAGCGAAGACTGG+AGG - chr1.1:50460687-50460706 MS.gene037997:intron 45.0%
!! AAAAATTAAAAATAAATTAC+AGG - chr1.1:50459008-50459027 MS.gene037997:CDS 5.0%
!! AAAATTAAAAATAAATTACA+GGG - chr1.1:50459009-50459028 MS.gene037997:CDS 5.0%
!!! AAATTTTTTTTTTTTACTTT+TGG - chr1.1:50458801-50458820 MS.gene037997:intron 5.0%
AAACTCGCACACACACTGTG+AGG + chr1.1:50458416-50458435 None:intergenic 50.0%
AACCCCACTCATCTCCTTTG+AGG + chr1.1:50459980-50459999 None:intergenic 50.0%
ACATGTCCCGTTCATCTTCG+AGG + chr1.1:50460395-50460414 None:intergenic 50.0%
AGCCTCAAAGGAGATGAGTG+GGG - chr1.1:50459975-50459994 MS.gene037997:intron 50.0%
CCAGCCTTGGAAAAGAGTGA+TGG - chr1.1:50460564-50460583 MS.gene037997:intron 50.0%
GAAGAAAGGGTTGCAGTTGG+AGG + chr1.1:50458093-50458112 None:intergenic 50.0%
GACCACGGGAGATTGCAATA+AGG - chr1.1:50460365-50460384 MS.gene037997:intron 50.0%
GAGCTCTACCTCAACAGAAG+TGG - chr1.1:50460119-50460138 MS.gene037997:intron 50.0%
GCATAGCTTTCCCAGTTTGG+AGG + chr1.1:50459657-50459676 None:intergenic 50.0%
GCCTTGGAAAAGAGTGATGG+AGG - chr1.1:50460567-50460586 MS.gene037997:intron 50.0%
GGAAACCGTTTAGCCATCTC+TGG - chr1.1:50458281-50458300 MS.gene037997:CDS 50.0%
GGCATTCCTCGAAGATGAAC+GGG - chr1.1:50460386-50460405 MS.gene037997:intron 50.0%
GGTATCACCGGATAAGACCA+CGG - chr1.1:50460350-50460369 MS.gene037997:intron 50.0%
GTATCACCGGATAAGACCAC+GGG - chr1.1:50460351-50460370 MS.gene037997:intron 50.0%
GTCGGTGAGCATAACTCACT+TGG - chr1.1:50458566-50458585 MS.gene037997:CDS 50.0%
TCAGGCAACACCAACGAAGT+AGG + chr1.1:50459907-50459926 None:intergenic 50.0%
TCTGGAAGAGATGCCAGAGA+TGG + chr1.1:50458297-50458316 None:intergenic 50.0%
! CCATCACTCTTTTCCAAGGC+TGG + chr1.1:50460567-50460586 None:intergenic 50.0%
! CTTTTCCAAGGCTGGTAAGG+TGG + chr1.1:50460559-50460578 None:intergenic 50.0%
! GGAAAAGAGTGATGGAGGAC+TGG - chr1.1:50460572-50460591 MS.gene037997:intron 50.0%
! TGATTCGGCCAATGCTGTTC+CGG - chr1.1:50459713-50459732 MS.gene037997:intron 50.0%
! TGCCTTATTGCAATCTCCCG+TGG + chr1.1:50460370-50460389 None:intergenic 50.0%
! TTTTCCCTTGAGACTGCCGA+TGG - chr1.1:50459394-50459413 MS.gene037997:intron 50.0%
!! CAATCTCCCGTGGTCTTATC+CGG + chr1.1:50460360-50460379 None:intergenic 50.0%
!! CGGTAACAGGCTGTTTCTTC+TGG + chr1.1:50460500-50460519 None:intergenic 50.0%
AAGGGTTGCAGTTGGAGGAG+TGG + chr1.1:50458088-50458107 None:intergenic 55.0%
ACACACTGTGAGGTCCTAGC+TGG + chr1.1:50458406-50458425 None:intergenic 55.0%
ACAGCCTGTTACCGGAGATC+CGG - chr1.1:50460506-50460525 MS.gene037997:intron 55.0%
AGGCTGGTAAGGTGGAGATC+TGG + chr1.1:50460551-50460570 None:intergenic 55.0%
CTACGATGACCTCCAGATGC+AGG + chr1.1:50460081-50460100 None:intergenic 55.0%
CTGCATCTGGAGGTCATCGT+AGG - chr1.1:50460079-50460098 MS.gene037997:intron 55.0%
GATCTCCACCTTACCAGCCT+TGG - chr1.1:50460551-50460570 MS.gene037997:intron 55.0%
GCAGGAATAGACGTAGTGCC+CGG - chr1.1:50460454-50460473 MS.gene037997:intron 55.0%
TGGATGTGTTGCCGGATCTC+CGG + chr1.1:50460520-50460539 None:intergenic 55.0%
!! AGAAGAAGTGGGGGTGCCAT+TGG + chr1.1:50458115-50458134 None:intergenic 55.0%
!! GCTCTAGAATGCACCGGAGA+AGG - chr1.1:50459675-50459694 MS.gene037997:intron 55.0%
!! GGGGGTGCCATTGGAAGAAA+GGG + chr1.1:50458106-50458125 None:intergenic 55.0%
!! TGGGGGTGCCATTGGAAGAA+AGG + chr1.1:50458107-50458126 None:intergenic 55.0%
!! TTCGTTGGTGTTGCCTGACG+AGG - chr1.1:50459909-50459928 MS.gene037997:intron 55.0%
AAGCAGCAGCCTGCATCTGG+AGG - chr1.1:50460069-50460088 MS.gene037997:intron 60.0%
AGGGGCTGAGATTCGAACCC+CGG - chr1.1:50458613-50458632 MS.gene037997:CDS 60.0%
GAGCAGCGCACGCTGGAAAA+TGG - chr1.1:50459448-50459467 MS.gene037997:intron 60.0%
GTTGCCGGATCTCCGGTAAC+AGG + chr1.1:50460513-50460532 None:intergenic 60.0%
! CATTTTCCCAGGGCCTCGTC+AGG + chr1.1:50459925-50459944 None:intergenic 60.0%
CATGAACGAGCAGCGCACGC+TGG - chr1.1:50459441-50459460 MS.gene037997:intron 65.0%
CGGAAGCAGCAGCCTGCATC+TGG - chr1.1:50460066-50460085 MS.gene037997:intron 65.0%
GTGTTGCCTGACGAGGCCCT+GGG - chr1.1:50459916-50459935 MS.gene037997:intron 65.0%
! GGTGTTGCCTGACGAGGCCC+TGG - chr1.1:50459915-50459934 MS.gene037997:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 50458075 50460950 50458075 ID=MS.gene037997
chr1.1 mRNA 50458075 50460950 50458075 ID=MS.gene037997.t1;Parent=MS.gene037997
chr1.1 exon 50460876 50460950 50460876 ID=MS.gene037997.t1.exon1;Parent=MS.gene037997.t1
chr1.1 CDS 50460876 50460950 50460876 ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1
chr1.1 exon 50460707 50460783 50460707 ID=MS.gene037997.t1.exon2;Parent=MS.gene037997.t1
chr1.1 CDS 50460707 50460783 50460707 ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1
chr1.1 exon 50459542 50459686 50459542 ID=MS.gene037997.t1.exon3;Parent=MS.gene037997.t1
chr1.1 CDS 50459542 50459686 50459542 ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1
chr1.1 exon 50459251 50459398 50459251 ID=MS.gene037997.t1.exon4;Parent=MS.gene037997.t1
chr1.1 CDS 50459251 50459398 50459251 ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1
chr1.1 exon 50458815 50459138 50458815 ID=MS.gene037997.t1.exon5;Parent=MS.gene037997.t1
chr1.1 CDS 50458815 50459138 50458815 ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1
chr1.1 exon 50458075 50458703 50458075 ID=MS.gene037997.t1.exon6;Parent=MS.gene037997.t1
chr1.1 CDS 50458075 50458703 50458075 ID=cds.MS.gene037997.t1;Parent=MS.gene037997.t1
Gene Sequence

>MS.gene037997

ATGGTTGATTCCACTCCTCCAACTGCAACCCTTTCTTCCAATGGCACCCCCACTTCTTCTAGTTTCCGACGAACGGTTGTTTACTCACTTTCCCCTTCACTCTCATCCTTCTTATTCTTATCTCTATCATCTCACTTCTTTTTTTTTTTTTTTCTTTTCCTTTCTAGGTTACTTTATACGATTGGTGGCTCGTTAAATCATCTCAAGGAAACCGTTTAGCCATCTCTGGCATCTCTTCCAGAAAGTAAGGGTTTTCACTTTTCTTACATTCATTGTTTCACTATTAAAGTCTAAGTCTAGCTCATGTCTAAATTGTTAGGTTAAAGTTCCAGCTAGGACCTCACAGTGTGTGTGCGAGTTTTAGTAATACTGAAACAATTATTGTTTGTATGTTTTAAGTTAGATGAAAACTTGGCTTAGGTTTTTGAAGCTAATGCAAAAGCAGAAGTCACATACTTCTGATTTTACTGAAATAAAATTATCATTTTCGAGTCGGTGAGCATAACTCACTTGGTAGGGACAATGCATTGCAATATGCAGGGGCTGAGATTCGAACCCCGGATTCTCCACTTATTCACTTTAAGTTGCCTGCTTAACAATTTTTCTTTTTTTTACCATGTTTGACAATGGTAAAATAAAGCTTCAATATGCAAACGGTCACCGCAGCAGATATCAAGAGTTTGATTTTAGTCCTTCTACAAATATTTTTTTTATTTTAGTCCTTGCAAATTTTTTTTTTTTACTTTTGGTCCTTATTGTTTTGTTTTAATAATAATTGTGAAATTCATTCATATTAGAATATTCGATTTGTGTCTCTCAAAAGAAGGACTAAAATGAATATTAGAGGGACCAACTTCAATATGAACAGATTTTGCAAGGACTAAGACAATACACCAAGTGCCAAAATCAAACGGTGCTAAATTTGCAAGGACTAAAAATTAAAAATAAATTACAGGGACTAAAAGCATATCTAAATCTAAAATCAATTATAATAGTTTTGTTGCCCTTGTCACCACTAACTCAGCATTGTGACACTTCAGCAGAAATGGTGACTAACAGTTAGCAGTTTGTTGGCTGTTTTTCAGCAGTTAGTTAGCTAGTCTCTACTGTTAGCTTGCACTGCAAGTTTCCTTTTCATGTATAAATGCTAGTGTGTATTCATTCTCTCATTTAGATCATTCAATACAAGATGATTCTCTCTCAATTACTATCATAAGAGGTTTCTAACGTTTTAAAAAAATACATACTTTATGTTGTAAATCAGGGAAGAAGCAGTTCAGTTTTTTGTTTCCACTCCTATTATCAAAAGATATGATGTGTTTTCCCTTGAGACTGCCGATGGTATATATGTTATCACTAGGGGTTTCATGAACGAGCAGCGCACGCTGGAAAATGGTTTTACTCCTCAGGTTTGTTGTAATAAGTGTCAATGTCTTTCGTGGTTGGTTTTGCAAGACGTTATTTATAATGATATTTGTTCCTTATTTTATGACGTTGAGTTTGAGTGCTAACTGTGATGGATTTTTGTTTTTTTTGCCTACTTTATGGTTAGATTTCAAAGAATTTTTTATATGGTTTTCCTCCAAACTGGGAAAGCTATGCTCTAGAATGCACCGGAGAAGGATCTGAAGCTGATATTGATTCGGCCAATGCTGTTCCGGATAGTGTATCTGCAATTTGTCAAGAAATCTTGTTTGATGGTAAGTATTTTGGTGATGTTTGTTAATTATTCTTGTCCATGTCTTAGAAATGTTTTGACGATTATCTCTTTAGTCTCGATATATAAGTCGTTGGTTTTAATTGTTGTTGCAGGTGAGGAAAATTTCATTCCTACTTCGTTGGTGTTGCCTGACGAGGCCCTGGGAAAATGCAAGAAACCATTCGGTACAAAAGAATGCAAAGCCTCAAAGGAGATGAGTGGGGTTGATGTTACTTATGGTAGTGGCGAAAATAGACATGGTACCAGGTTACGTGCTATTAATGTTTGTCAGCGGAAGCAGCAGCCTGCATCTGGAGGTCATCGTAGGCATCCAAATAAAAAACAGAGCTCTACCTCAACAGAAGTGGAAACTCGTGATTCGGATACTGCTATTTCTGAAAATGTATCAGTAAATCATCCAGAAATATCATCTGATGGTAAATATTTAGACATGTTCGTAAATGATTCGTATGTATGTTTCTTCATGTTCCATTTGTTTAATGTATTATCATTTTCTATATATCTTAATATTTTAAATTTTGTTGCAGCTGTAGAGAAGTCTTTTCCTACTTCTTTGGTATCACCGGATAAGACCACGGGAGATTGCAATAAGGCATTCCTCGAAGATGAACGGGACATGTCAATTAAGACGGGTGAGGTCAATGTTGTTCATGGTAGTGGCAGGAATAGACGTAGTGCCCGGTTGCATAATGTTAAACTCTGCCAGAAGAAACAGCCTGTTACCGGAGATCCGGCAACACATCCAGATAAAGACCAGATCTCCACCTTACCAGCCTTGGAAAAGAGTGATGGAGGACTGGAAAGTCTTATGACACCCATTCAGTCACAAAAGGGAATAGTAAACACATTGTCTGGGCAGGTTACTAATAAATTCAGATCCAGAATTCCCAAAACTTTTTCAGCGAAGACTGGAGGTTGTTATAAGAGAAAAAGGGTGACAGTTGAAACAGATGCAGTTGGACCTAAGAGAAAAAATATTAAACCCGCATCTTCTGTAAAATCTTCACAAGGAAGGGATACAAGTCACTCGAACAAGGGAAGCACACAGAGATTGTCCTCTGTTTCTCCAGAGTCATTGGGTCTCAAAAAATCAAGATCTGGTAAATTTTCCAATCATTGTCAATTCATGAAGGAACACATCATATTTTGTAATTGA

Protein sequence

>MS.gene037997.t1

MVDSTPPTATLSSNGTPTSSSFRRTVTLYDWWLVKSSQGNRLAISGISSRKEEAVQFFVSTPIIKRYDVFSLETADGIYVITRGFMNEQRTLENGFTPQISKNFLYGFPPNWESYALECTGEGSEADIDSANAVPDSVSAICQEILFDGEENFIPTSLVLPDEALGKCKKPFGTKECKASKEMSGVDVTYGSGENRHGTRLRAINVCQRKQQPASGGHRRHPNKKQSSTSTEVETRDSDTAISENVSVNHPEISSDAVEKSFPTSLVSPDKTTGDCNKAFLEDERDMSIKTGEVNVVHGSGRNRRSARLHNVKLCQKKQPVTGDPATHPDKDQISTLPALEKSDGGLESLMTPIQSQKGIVNTLSGQVTNKFRSRIPKTFSAKTGGCYKRKRVTVETDAVGPKRKNIKPASSVKSSQGRDTSHSNKGSTQRLSSVSPESLGLKKSRSGKFSNHCQFMKEHIIFCN