Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038001.t1 | XP_013468354.1 | 88.5 | 602 | 59 | 2 | 1 | 598 | 1 | 596 | 3.10E-293 | 1017.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038001.t1 | F4KCE9 | 24.4 | 626 | 377 | 19 | 18 | 596 | 11 | 587 | 2.5e-17 | 92.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038001.t1 | A0A072VLC9 | 88.5 | 602 | 59 | 2 | 1 | 598 | 1 | 596 | 2.2e-293 | 1017.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038001.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038001.t1 | MTR_1g069020 | 89.867 | 602 | 51 | 2 | 1 | 598 | 1 | 596 | 0.0 | 1075 |
| MS.gene038001.t1 | MTR_1g069015 | 68.481 | 349 | 104 | 2 | 242 | 584 | 131 | 479 | 1.56e-151 | 446 |
| MS.gene038001.t1 | MTR_1g069015 | 58.739 | 349 | 136 | 2 | 1 | 344 | 1 | 346 | 3.44e-131 | 394 |
| MS.gene038001.t1 | MTR_7g039520 | 36.620 | 142 | 74 | 5 | 1 | 134 | 1 | 134 | 8.11e-15 | 76.6 |
| MS.gene038001.t1 | MTR_5g040080 | 36.620 | 142 | 74 | 5 | 1 | 134 | 1 | 134 | 9.39e-15 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038001.t1 | AT5G02520 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 9.05e-22 | 100 |
| MS.gene038001.t1 | AT5G02520 | 45.714 | 70 | 37 | 1 | 528 | 596 | 518 | 587 | 7.79e-11 | 65.5 |
| MS.gene038001.t1 | AT5G02520 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 9.41e-22 | 100 |
| MS.gene038001.t1 | AT5G02520 | 45.714 | 70 | 37 | 1 | 528 | 596 | 519 | 588 | 7.67e-11 | 65.5 |
| MS.gene038001.t1 | AT5G02520 | 43.103 | 116 | 63 | 3 | 18 | 131 | 11 | 125 | 1.17e-21 | 99.8 |
| MS.gene038001.t1 | AT1G58210 | 39.130 | 92 | 52 | 1 | 24 | 115 | 64 | 151 | 4.19e-15 | 76.6 |
Find 148 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTACCATCAGATAATATTTC+TGG | 0.175942 | 1.1:+50489335 | None:intergenic |
| TTACCATCAAATGATATTTC+TGG | 0.188236 | 1.1:+50489748 | None:intergenic |
| AATGGAGTCTTGCAATTCTC+TGG | 0.210078 | 1.1:+50490015 | None:intergenic |
| CAGTAGCAGGTTGCTTCTTC+TGG | 0.230387 | 1.1:+50489017 | None:intergenic |
| CAATTCTCTGGGGCCTCTTC+AGG | 0.246287 | 1.1:+50490027 | None:intergenic |
| CATACGCAGGCTGCTTCTTC+TGG | 0.254613 | 1.1:+50489462 | None:intergenic |
| TTCTACCTCCCTTAGAGTTT+TGG | 0.256165 | 1.1:-50488378 | MS.gene038001:CDS |
| TCTTTATCTGGATGTGTTGC+AGG | 0.273995 | 1.1:+50488989 | None:intergenic |
| AGATTTGCTGGTACATTATC+AGG | 0.278683 | 1.1:+50489772 | None:intergenic |
| ATTGGAAAATTTACCAGATC+TGG | 0.281653 | 1.1:+50488628 | None:intergenic |
| TGATTCGGGCAATGCTGTTT+TGG | 0.283336 | 1.1:-50490239 | MS.gene038001:CDS |
| GATATTTCTGGAAGATTTGC+TGG | 0.294734 | 1.1:+50489760 | None:intergenic |
| AAATTCTGTTCCTACCTCTT+TGG | 0.307585 | 1.1:-50489615 | MS.gene038001:CDS |
| TCACATACCATGTTATAAAT+AGG | 0.311211 | 1.1:+50488343 | None:intergenic |
| ACATATCTTGTTCATCTTCA+AGG | 0.335841 | 1.1:+50489567 | None:intergenic |
| CCGTGAGATTACAGAAATTC+AGG | 0.340294 | 1.1:-50488244 | MS.gene038001:CDS |
| TTGATTGCGCCAAAACTCTA+AGG | 0.343897 | 1.1:+50488369 | None:intergenic |
| AGATTCGTTGATACATTATC+AGG | 0.360747 | 1.1:+50489359 | None:intergenic |
| GTAGAGCTCTGCTCTTTCTC+TGG | 0.362481 | 1.1:+50489422 | None:intergenic |
| CTTCCAGAAATATCATTTGA+TGG | 0.363684 | 1.1:-50489751 | MS.gene038001:intron |
| GGAAGAGTAAACACAATGTC+TGG | 0.368000 | 1.1:-50488887 | MS.gene038001:CDS |
| GCAGAGATCTGGTCTTTATC+TGG | 0.371673 | 1.1:+50488977 | None:intergenic |
| TGAGACTTTGCATTCATCTC+CGG | 0.373003 | 1.1:+50489990 | None:intergenic |
| GGTTGTGGAAAATCATGATT+TGG | 0.381883 | 1.1:-50489393 | MS.gene038001:CDS |
| AATGATGAAGAGCCTCTAAA+AGG | 0.383621 | 1.1:+50488201 | None:intergenic |
| AGGGTTTAACATTATGTATC+CGG | 0.385989 | 1.1:+50489041 | None:intergenic |
| ATCAGAAACCGGTACTGATT+CGG | 0.388923 | 1.1:-50490254 | MS.gene038001:CDS |
| TCAGAAACCGGTACTGATTC+GGG | 0.390167 | 1.1:-50490253 | MS.gene038001:CDS |
| AAACAGTGCACACTGGATAA+TGG | 0.412705 | 1.1:-50490479 | MS.gene038001:CDS |
| TCTAACATTGGACTTGGATC+TGG | 0.412854 | 1.1:+50487647 | None:intergenic |
| GTTGATATTGCTTGTGGTAG+TGG | 0.415196 | 1.1:-50489952 | MS.gene038001:CDS |
| ATGGAGTCTTGCAATTCTCT+GGG | 0.433444 | 1.1:+50490016 | None:intergenic |
| TCCTACTTCTTTGTTATCAC+CGG | 0.437184 | 1.1:-50489176 | MS.gene038001:CDS |
| ATTCAGAGAAGAAGCGCTTC+GGG | 0.441350 | 1.1:-50490594 | MS.gene038001:intron |
| TACTATTCTAACATTGGACT+TGG | 0.441541 | 1.1:+50487641 | None:intergenic |
| TTTAGAGGCTCTTCATCATT+GGG | 0.442092 | 1.1:-50488198 | MS.gene038001:CDS |
| GATCTCTGCCTCAGCAGCCT+TGG | 0.442994 | 1.1:-50488963 | MS.gene038001:CDS |
| GACCATGGGAGATCGCAATA+AGG | 0.444355 | 1.1:-50489149 | MS.gene038001:CDS |
| CAGAAGAAGCAACCTGCTAC+TGG | 0.444849 | 1.1:-50489016 | MS.gene038001:CDS |
| GATTCAGAGAAGAAGCGCTT+CGG | 0.446396 | 1.1:-50490595 | MS.gene038001:intron |
| GGCACTCCTCGAAGATGAAC+GGG | 0.449784 | 1.1:-50489128 | MS.gene038001:CDS |
| TTATCAGGAACAACAGTAAC+CGG | 0.454689 | 1.1:+50489787 | None:intergenic |
| GTCAATGTTGTTCATGGTAG+TGG | 0.459300 | 1.1:-50489082 | MS.gene038001:CDS |
| GCAGGTTGCTTCTTCTGGTA+GGG | 0.464478 | 1.1:+50489022 | None:intergenic |
| GAGACTTTGCATTCATCTCC+GGG | 0.467675 | 1.1:+50489991 | None:intergenic |
| CGATCTCCCATGGTCTTATC+CGG | 0.467896 | 1.1:+50489157 | None:intergenic |
| AGTGAGGTCAACGATATTCA+TGG | 0.467977 | 1.1:-50489533 | MS.gene038001:CDS |
| GGTAGGGTCAATGTTGTTCA+TGG | 0.469284 | 1.1:-50489088 | MS.gene038001:CDS |
| GACACCCGTTCAATCACAAA+AGG | 0.469932 | 1.1:-50488909 | MS.gene038001:CDS |
| ACATATCCCGTTCATCTTCG+AGG | 0.471391 | 1.1:+50489122 | None:intergenic |
| TTGCATTCATCTCCGGGGAA+TGG | 0.473283 | 1.1:+50489997 | None:intergenic |
| ACGGCCTTTGAGGTAGAGCT+TGG | 0.476441 | 1.1:+50489823 | None:intergenic |
| GACAATTACTATTCTAACAT+TGG | 0.478204 | 1.1:+50487635 | None:intergenic |
| TTGTACTTGTAGTCTTCAGT+GGG | 0.482218 | 1.1:-50487738 | MS.gene038001:intron |
| GAGCTCTACCTTGAAGGTTG+TGG | 0.482477 | 1.1:-50489408 | MS.gene038001:CDS |
| GAACGGTTACATTATACGAT+TGG | 0.482529 | 1.1:-50491099 | MS.gene038001:CDS |
| AGGCTGCTGAGGCAGAGATC+TGG | 0.487795 | 1.1:+50488966 | None:intergenic |
| AGCAGGTTGCTTCTTCTGGT+AGG | 0.488235 | 1.1:+50489021 | None:intergenic |
| CGCGATGTAGGATGCTGCTT+CGG | 0.500212 | 1.1:+50489874 | None:intergenic |
| TTCTTCTTGCTTCCAACGAA+CGG | 0.503942 | 1.1:-50491116 | MS.gene038001:CDS |
| TCTTTCTCTGGATTCTTGAG+AGG | 0.504491 | 1.1:+50489434 | None:intergenic |
| AGAGCAGAGCTCTACCTTGA+AGG | 0.508453 | 1.1:-50489414 | MS.gene038001:CDS |
| AGTCCTTAGTACTATGCAAC+CGG | 0.517646 | 1.1:+50489486 | None:intergenic |
| GGCCGTCGAAAATCATGATC+CGG | 0.520370 | 1.1:-50489806 | MS.gene038001:CDS |
| GAGGCTCTTCATCATTGGGC+AGG | 0.522623 | 1.1:-50488194 | MS.gene038001:intron |
| TGCCTTATTGCGATCTCCCA+TGG | 0.525598 | 1.1:+50489147 | None:intergenic |
| CAGAAGAAGCAGCCTGCGTA+TGG | 0.526168 | 1.1:-50489461 | MS.gene038001:CDS |
| ACCGGCCACTACGTCTAGTC+CGG | 0.527410 | 1.1:+50489504 | None:intergenic |
| GTTGTACTTGTAGTCTTCAG+TGG | 0.527914 | 1.1:-50487739 | MS.gene038001:intron |
| CGTATAATGTAACCGTTCGT+TGG | 0.528108 | 1.1:+50491104 | None:intergenic |
| GTCAACGATATTCATGGTAG+TGG | 0.532001 | 1.1:-50489527 | MS.gene038001:CDS |
| AGCATTGCCCGAATCAGTAC+CGG | 0.533197 | 1.1:+50490246 | None:intergenic |
| CGGTTACATTATACGATTGG+TGG | 0.540059 | 1.1:-50491096 | MS.gene038001:CDS |
| GGAAATGACTGATGGAGGAC+TGG | 0.545081 | 1.1:-50488942 | MS.gene038001:CDS |
| GGGTTTAACATTATGTATCC+GGG | 0.545667 | 1.1:+50489042 | None:intergenic |
| TTGAGAGGACCTCGCGATGT+AGG | 0.547391 | 1.1:+50489862 | None:intergenic |
| TATCAAGGAACTTTCTCTGA+CGG | 0.548904 | 1.1:-50490199 | MS.gene038001:intron |
| AGACGCCGGAGATGGCTAAA+CGG | 0.549320 | 1.1:+50491044 | None:intergenic |
| TCAGGCAATACCGACGAAGT+AGG | 0.550175 | 1.1:+50490045 | None:intergenic |
| CCTGAATTTCTGTAATCTCA+CGG | 0.553835 | 1.1:+50488244 | None:intergenic |
| TGGCCGGTTGCATAGTACTA+AGG | 0.554205 | 1.1:-50489489 | MS.gene038001:CDS |
| AAGTCTCAAAGAAGATGAGT+GGG | 0.555389 | 1.1:-50489975 | MS.gene038001:CDS |
| GTTAGAGAACAATCAGAAAC+CGG | 0.557595 | 1.1:-50490265 | MS.gene038001:CDS |
| AACCACCGTTTAGCCATCTC+CGG | 0.558688 | 1.1:-50491049 | MS.gene038001:CDS |
| GTTGCAGGATCTCCAGTAGC+AGG | 0.559749 | 1.1:+50489004 | None:intergenic |
| GCAGCCTTGGAAATGACTGA+TGG | 0.560856 | 1.1:-50488950 | MS.gene038001:CDS |
| TGTGGAAGAGACGCCGGAGA+TGG | 0.563212 | 1.1:+50491036 | None:intergenic |
| AGTAAACACAATGTCTGGGC+AGG | 0.565926 | 1.1:-50488882 | MS.gene038001:CDS |
| TCCGGTGATAACAAAGAAGT+AGG | 0.566020 | 1.1:+50489175 | None:intergenic |
| CTGGTAACATAATCATGAGC+CGG | 0.567032 | 1.1:+50487666 | None:intergenic |
| CGGGATATGTCAATTAAGAC+GGG | 0.568225 | 1.1:-50489109 | MS.gene038001:CDS |
| AGGCACTCCTCGAAGATGAA+CGG | 0.570389 | 1.1:-50489129 | MS.gene038001:CDS |
| ACGGGATATGTCAATTAAGA+CGG | 0.571346 | 1.1:-50489110 | MS.gene038001:CDS |
| AGAAGAAGAAGAAGGTGTGG+GGG | 0.572575 | 1.1:+50491135 | None:intergenic |
| ATATGTCAATTAAGACGGGT+AGG | 0.573298 | 1.1:-50489105 | MS.gene038001:CDS |
| AATTGCAAGACTCCATTCCC+CGG | 0.573734 | 1.1:-50490009 | MS.gene038001:CDS |
| CTGTAAAATCTCCTCAAGGA+AGG | 0.576048 | 1.1:-50488727 | MS.gene038001:CDS |
| TCTTCATCTGAACGCTTGAG+AGG | 0.576282 | 1.1:+50489847 | None:intergenic |
| ACGATATTCATGGTAGTGGC+CGG | 0.576468 | 1.1:-50489523 | MS.gene038001:CDS |
| AGTGGGGTTGATATTGCTTG+TGG | 0.577027 | 1.1:-50489958 | MS.gene038001:CDS |
| GAATGTAAGTCACTCGAACA+AGG | 0.577107 | 1.1:-50488705 | MS.gene038001:CDS |
| CAATACCGACGAAGTAGGAA+TGG | 0.577162 | 1.1:+50490050 | None:intergenic |
| TGACTTACATTCCTTCCTTG+AGG | 0.583902 | 1.1:+50488716 | None:intergenic |
| ATGTTGTTCATGGTAGTGGC+GGG | 0.588592 | 1.1:-50489078 | MS.gene038001:CDS |
| AGTCATTTCCAAGGCTGCTG+AGG | 0.594162 | 1.1:+50488955 | None:intergenic |
| GCGGGAATAGACGTAGTGCC+CGG | 0.594246 | 1.1:-50489060 | MS.gene038001:CDS |
| CTTCCAGAAATATTATCTGA+TGG | 0.594536 | 1.1:-50489338 | MS.gene038001:intron |
| GAAGAGTAAACACAATGTCT+GGG | 0.597995 | 1.1:-50488886 | MS.gene038001:CDS |
| CATTAATAAACAGTGCACAC+TGG | 0.598333 | 1.1:-50490486 | MS.gene038001:CDS |
| ACACCCGTTCAATCACAAAA+GGG | 0.599424 | 1.1:-50488908 | MS.gene038001:CDS |
| AATGTAAGTCACTCGAACAA+GGG | 0.601122 | 1.1:-50488704 | MS.gene038001:CDS |
| TCCTCCATCAGTCATTTCCA+AGG | 0.602323 | 1.1:+50488946 | None:intergenic |
| AATGTTGTTCATGGTAGTGG+CGG | 0.603017 | 1.1:-50489079 | MS.gene038001:CDS |
| TGATTGCGCCAAAACTCTAA+GGG | 0.604798 | 1.1:+50488370 | None:intergenic |
| GTTATCACCGGATAAGACCA+TGG | 0.605592 | 1.1:-50489164 | MS.gene038001:CDS |
| GCCTTGGAAATGACTGATGG+AGG | 0.606817 | 1.1:-50488947 | MS.gene038001:CDS |
| GTTTCCCTTGAGACTGTCGA+TGG | 0.607459 | 1.1:-50490533 | MS.gene038001:CDS |
| ATATACCATCGACAGTCTCA+AGG | 0.611734 | 1.1:+50490528 | None:intergenic |
| GCAATCTCTCGTGACCAAAG+AGG | 0.613351 | 1.1:+50489601 | None:intergenic |
| AAAGTCCATTCCTACTTCGT+CGG | 0.616794 | 1.1:-50490055 | MS.gene038001:CDS |
| AGAGCCAAGCTCTACCTCAA+AGG | 0.621891 | 1.1:-50489827 | MS.gene038001:CDS |
| AAAGTCTCAAAGAAGATGAG+TGG | 0.624361 | 1.1:-50489976 | MS.gene038001:CDS |
| TATGTCAATTAAGACGGGTA+GGG | 0.624553 | 1.1:-50489104 | MS.gene038001:CDS |
| TTATCACCGGATAAGACCAT+GGG | 0.624895 | 1.1:-50489163 | MS.gene038001:CDS |
| TTACTTTGTGGAAGAGACGC+CGG | 0.624985 | 1.1:+50491030 | None:intergenic |
| TATTATCAAAAGATATGATG+AGG | 0.626070 | 1.1:-50490555 | MS.gene038001:CDS |
| TCTTCTGTAAAATCTCCTCA+AGG | 0.626237 | 1.1:-50488731 | MS.gene038001:CDS |
| TTCGTCGGTATTGCCTGAAG+AGG | 0.626897 | 1.1:-50490040 | MS.gene038001:CDS |
| TATACCATCGACAGTCTCAA+GGG | 0.636705 | 1.1:+50490529 | None:intergenic |
| CAATGACTCTGGAGAAACTG+TGG | 0.637102 | 1.1:+50488664 | None:intergenic |
| TGGCTCGTTAAATCATCTCA+AGG | 0.637214 | 1.1:-50491076 | MS.gene038001:CDS |
| TTGAGAGGATCTCCATACGC+AGG | 0.638184 | 1.1:+50489449 | None:intergenic |
| GCCGGACTAGACGTAGTGGC+CGG | 0.638720 | 1.1:-50489505 | MS.gene038001:CDS |
| TCAACAACCTATTTATAACA+TGG | 0.640146 | 1.1:-50488350 | MS.gene038001:intron |
| GAGATTACAGAAATTCAGGA+AGG | 0.641599 | 1.1:-50488240 | MS.gene038001:CDS |
| GGCGACAATTGAAACAGAAG+CGG | 0.644820 | 1.1:-50488786 | MS.gene038001:CDS |
| AAGCAGCATCCTACATCGCG+AGG | 0.650638 | 1.1:-50489871 | MS.gene038001:CDS |
| TGGAGTCTTGCAATTCTCTG+GGG | 0.655923 | 1.1:+50490017 | None:intergenic |
| TCTCTCGTGACCAAAGAGGT+AGG | 0.664826 | 1.1:+50489605 | None:intergenic |
| TATGTCAATTAAGATGAGTG+AGG | 0.667369 | 1.1:-50489549 | MS.gene038001:CDS |
| GACTTTAATAGTATGCAACC+TGG | 0.671697 | 1.1:+50489912 | None:intergenic |
| CGCCGGAGATGGCTAAACGG+TGG | 0.689679 | 1.1:+50491047 | None:intergenic |
| AGACTTTGCATTCATCTCCG+GGG | 0.700085 | 1.1:+50489992 | None:intergenic |
| TTGCGCCAAAACTCTAAGGG+AGG | 0.703796 | 1.1:+50488373 | None:intergenic |
| TGATACATTATCAGGAACAG+CGG | 0.709990 | 1.1:+50489367 | None:intergenic |
| AGTGGCCGGACTAGACGTAG+TGG | 0.713698 | 1.1:-50489509 | MS.gene038001:CDS |
| GGGGTGCAATTAGAAGAACT+GGG | 0.727442 | 1.1:+50491154 | None:intergenic |
| AGTCTCAAAGAAGATGAGTG+GGG | 0.750570 | 1.1:-50489974 | MS.gene038001:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAGTAAAAAAAAAATCTAA+AGG | + | chr1.1:50490871-50490890 | None:intergenic | 10.0% |
| !! | AAAGATGTTATAAGAAAAAA+AGG | - | chr1.1:50490004-50490023 | MS.gene038001:CDS | 15.0% |
| !! | AAGATGTTATAAGAAAAAAA+GGG | - | chr1.1:50490005-50490024 | MS.gene038001:CDS | 15.0% |
| !!! | ATACTTTTTGTTAATTTCAT+CGG | - | chr1.1:50487986-50488005 | MS.gene038001:intron | 15.0% |
| !!! | ATTTTCAAGAGTTTTTTATT+TGG | - | chr1.1:50488487-50488506 | MS.gene038001:intron | 15.0% |
| !!! | TTTCTTTATGTTATTTTTGA+AGG | - | chr1.1:50490833-50490852 | MS.gene038001:intron | 15.0% |
| !!! | TTTTTTCTTATAACATCTTT+TGG | + | chr1.1:50490004-50490023 | None:intergenic | 15.0% |
| !! | AAAAAAAAATCTAAAGGAAC+TGG | + | chr1.1:50490865-50490884 | None:intergenic | 20.0% |
| !! | AAAAAAACAAAAATCCATCA+GGG | + | chr1.1:50488449-50488468 | None:intergenic | 20.0% |
| !! | AATATAAAAAACAGTTACTG+TGG | - | chr1.1:50488159-50488178 | MS.gene038001:intron | 20.0% |
| !! | CTATTCCAAAGATTAAATAA+TGG | + | chr1.1:50490989-50491008 | None:intergenic | 20.0% |
| !! | GAGTGTATATATTATCAATT+AGG | + | chr1.1:50490272-50490291 | None:intergenic | 20.0% |
| !! | GGTAATAGTAATTGTTTATT+GGG | - | chr1.1:50490921-50490940 | MS.gene038001:intron | 20.0% |
| !! | GTTAACACTAAACTATAAAT+TGG | - | chr1.1:50488047-50488066 | MS.gene038001:intron | 20.0% |
| !! | TATTATCAAAAGATATGATG+AGG | - | chr1.1:50488257-50488276 | MS.gene038001:intron | 20.0% |
| !! | TGGTAATAGTAATTGTTTAT+TGG | - | chr1.1:50490920-50490939 | MS.gene038001:intron | 20.0% |
| !! | TTACTCTATTCTTTATGTTT+GGG | - | chr1.1:50490391-50490410 | MS.gene038001:intron | 20.0% |
| !! | TTGTAAAAAAGAACAATGAT+TGG | + | chr1.1:50490205-50490224 | None:intergenic | 20.0% |
| !! | TTTACTCTATTCTTTATGTT+TGG | - | chr1.1:50490390-50490409 | MS.gene038001:intron | 20.0% |
| !!! | AATAGATGATCTTCTAATTT+TGG | - | chr1.1:50491004-50491023 | MS.gene038001:intron | 20.0% |
| !!! | AATGAATTTGCATTTTATCA+AGG | - | chr1.1:50488598-50488617 | MS.gene038001:intron | 20.0% |
| !!! | ATGGTATATATGTTTTGATT+AGG | - | chr1.1:50488298-50488317 | MS.gene038001:intron | 20.0% |
| !!! | GAGAATTTTTTAAGTTAGTT+GGG | + | chr1.1:50490754-50490773 | None:intergenic | 20.0% |
| !!! | GGTTTAATAATTTTTCTCTT+AGG | + | chr1.1:50490057-50490076 | None:intergenic | 20.0% |
| !!! | GTTTTATTAATTTTTGTAGC+AGG | - | chr1.1:50488728-50488747 | MS.gene038001:CDS | 20.0% |
| !!! | TCATCATATCTTTTGATAAT+AGG | + | chr1.1:50488258-50488277 | None:intergenic | 20.0% |
| !!! | TGAGAATTTTTTAAGTTAGT+TGG | + | chr1.1:50490755-50490774 | None:intergenic | 20.0% |
| !!! | TGGTATATATGTTTTGATTA+GGG | - | chr1.1:50488299-50488318 | MS.gene038001:intron | 20.0% |
| !!! | TGTTTTTTTCTTCTATTTCA+TGG | - | chr1.1:50488460-50488479 | MS.gene038001:intron | 20.0% |
| ! | AAAAAACAAAAATCCATCAG+GGG | + | chr1.1:50488448-50488467 | None:intergenic | 25.0% |
| ! | AAAAATGCTAACAATAGCAT+TGG | + | chr1.1:50490342-50490361 | None:intergenic | 25.0% |
| ! | AAGAAACATTCTAAATAAGC+TGG | + | chr1.1:50490819-50490838 | None:intergenic | 25.0% |
| ! | AATCTTGTTGAATCAGAAAT+TGG | - | chr1.1:50487874-50487893 | MS.gene038001:intron | 25.0% |
| ! | AGAAACATTCTAAATAAGCT+GGG | + | chr1.1:50490818-50490837 | None:intergenic | 25.0% |
| ! | CTTCATGAATAAACAATGAT+TGG | + | chr1.1:50490234-50490253 | None:intergenic | 25.0% |
| ! | GAAAAAAACAAAAATCCATC+AGG | + | chr1.1:50488450-50488469 | None:intergenic | 25.0% |
| ! | TATTAAGATATAGAGACTGT+AGG | + | chr1.1:50489582-50489601 | None:intergenic | 25.0% |
| ! | TCAACAACCTATTTATAACA+TGG | - | chr1.1:50490462-50490481 | MS.gene038001:intron | 25.0% |
| ! | TCACATACCATGTTATAAAT+AGG | + | chr1.1:50490472-50490491 | None:intergenic | 25.0% |
| ! | TTACCATCAAATGATATTTC+TGG | + | chr1.1:50489067-50489086 | None:intergenic | 25.0% |
| ! | TTACCATCAGATAATATTTC+TGG | + | chr1.1:50489480-50489499 | None:intergenic | 25.0% |
| ! | TTCTGATTCAACAAGATTAT+TGG | + | chr1.1:50487872-50487891 | None:intergenic | 25.0% |
| !! | ATTGTTAGCATTTTTGTACA+TGG | - | chr1.1:50490347-50490366 | MS.gene038001:intron | 25.0% |
| !! | TCATAAGTGTCAAATGTTTT+TGG | - | chr1.1:50488377-50488396 | MS.gene038001:CDS | 25.0% |
| !! | TTGCAAGATATTGTTGATAA+TGG | - | chr1.1:50488409-50488428 | MS.gene038001:intron | 25.0% |
| !! | TTTGTTATGGTTATTGCTAT+TGG | - | chr1.1:50490900-50490919 | MS.gene038001:intron | 25.0% |
| !!! | AGTATTAAGTATTGAAAGTC+AGG | + | chr1.1:50487971-50487990 | None:intergenic | 25.0% |
| !!! | ATATCTTTTGATAATAGGAG+CGG | + | chr1.1:50488253-50488272 | None:intergenic | 25.0% |
| !!! | ATCGGTTTTGAATTTATGTT+TGG | - | chr1.1:50488004-50488023 | MS.gene038001:intron | 25.0% |
| !!! | GGTATATATGTTTTGATTAG+GGG | - | chr1.1:50488300-50488319 | MS.gene038001:intron | 25.0% |
| !!! | TCTAATTTTGGAATGATACT+TGG | - | chr1.1:50491016-50491035 | MS.gene038001:intron | 25.0% |
| !!! | TTATGTTTGGGTTATTTTGT+AGG | - | chr1.1:50490403-50490422 | MS.gene038001:intron | 25.0% |
| ACACTTATGAATACAAACCT+GGG | + | chr1.1:50488367-50488386 | None:intergenic | 30.0% | |
| ACATATCTTGTTCATCTTCA+AGG | + | chr1.1:50489248-50489267 | None:intergenic | 30.0% | |
| AGAGGTAATTACACAAAACA+AGG | + | chr1.1:50490714-50490733 | None:intergenic | 30.0% | |
| AGATTCGTTGATACATTATC+AGG | + | chr1.1:50489456-50489475 | None:intergenic | 30.0% | |
| AGGGTTTAACATTATGTATC+CGG | + | chr1.1:50489774-50489793 | None:intergenic | 30.0% | |
| ATTGGAAAATTTACCAGATC+TGG | + | chr1.1:50490187-50490206 | None:intergenic | 30.0% | |
| CTTCCAGAAATATCATTTGA+TGG | - | chr1.1:50489061-50489080 | MS.gene038001:CDS | 30.0% | |
| CTTCCAGAAATATTATCTGA+TGG | - | chr1.1:50489474-50489493 | MS.gene038001:CDS | 30.0% | |
| GAAACATTCTAAATAAGCTG+GGG | + | chr1.1:50490817-50490836 | None:intergenic | 30.0% | |
| GACGGTAAATATTTCGATAA+TGG | - | chr1.1:50488631-50488650 | MS.gene038001:intron | 30.0% | |
| GTTACTTGAGTTAATCGTAT+AGG | - | chr1.1:50487898-50487917 | MS.gene038001:intron | 30.0% | |
| TACAAGTACAACAGCAAAAT+CGG | + | chr1.1:50491065-50491084 | None:intergenic | 30.0% | |
| TACTAAGATATAGAGACTGT+AGG | + | chr1.1:50489152-50489171 | None:intergenic | 30.0% | |
| TAGATTGTAAATCTTCCAGT+AGG | + | chr1.1:50490507-50490526 | None:intergenic | 30.0% | |
| TATGTCAATTAAGATGAGTG+AGG | - | chr1.1:50489263-50489282 | MS.gene038001:intron | 30.0% | |
| TTATTGGGAAATGTTTAAGC+TGG | - | chr1.1:50490936-50490955 | MS.gene038001:intron | 30.0% | |
| ! | ATTAATTTTTGTAGCAGGTG+AGG | - | chr1.1:50488733-50488752 | MS.gene038001:CDS | 30.0% |
| ! | CAAAGATTAAATAATGGAGC+CGG | + | chr1.1:50490983-50491002 | None:intergenic | 30.0% |
| !! | AAGTATTGAAAGTCAGGTTT+GGG | + | chr1.1:50487965-50487984 | None:intergenic | 30.0% |
| !! | CTATTTGATCAGCTTTGTTA+TGG | - | chr1.1:50490887-50490906 | MS.gene038001:intron | 30.0% |
| !! | TAAGTATTGAAAGTCAGGTT+TGG | + | chr1.1:50487966-50487985 | None:intergenic | 30.0% |
| !!! | AGTTGTATTTTGAAACATGC+CGG | - | chr1.1:50491127-50491146 | MS.gene038001:CDS | 30.0% |
| !!! | ATTTGGCTTTTCTGAAAACT+GGG | - | chr1.1:50488504-50488523 | MS.gene038001:intron | 30.0% |
| !!! | TAAGTGTCAAATGTTTTTGG+TGG | - | chr1.1:50488380-50488399 | MS.gene038001:CDS | 30.0% |
| !!! | TATTTGGCTTTTCTGAAAAC+TGG | - | chr1.1:50488503-50488522 | MS.gene038001:intron | 30.0% |
| !!! | TCTTTGAAATCACCTTTTAG+AGG | - | chr1.1:50490599-50490618 | MS.gene038001:intron | 30.0% |
| !!! | TCTTTTGGTTTTTGCTGAAA+AGG | + | chr1.1:50489989-50490008 | None:intergenic | 30.0% |
| !!! | TGAAAAGGTTTTGGAAATTC+TGG | + | chr1.1:50489974-50489993 | None:intergenic | 30.0% |
| AAAGTCTCAAAGAAGATGAG+TGG | - | chr1.1:50488836-50488855 | MS.gene038001:CDS | 35.0% | |
| AAATTCTGTTCCTACCTCTT+TGG | - | chr1.1:50489197-50489216 | MS.gene038001:intron | 35.0% | |
| AAGCAAGAAGAAGAAGAAGA+AGG | + | chr1.1:50487688-50487707 | None:intergenic | 35.0% | |
| AAGTCTCAAAGAAGATGAGT+GGG | - | chr1.1:50488837-50488856 | MS.gene038001:CDS | 35.0% | |
| AATGATGAAGAGCCTCTAAA+AGG | + | chr1.1:50490614-50490633 | None:intergenic | 35.0% | |
| AATGTAAGTCACTCGAACAA+GGG | - | chr1.1:50490108-50490127 | MS.gene038001:intron | 35.0% | |
| ACAAGTACAACAGCAAAATC+GGG | + | chr1.1:50491064-50491083 | None:intergenic | 35.0% | |
| ACGGGATATGTCAATTAAGA+CGG | - | chr1.1:50489702-50489721 | MS.gene038001:intron | 35.0% | |
| ACTAATACCTAACTGAGGTT+CGG | - | chr1.1:50490774-50490793 | MS.gene038001:intron | 35.0% | |
| AGTCTCAAAAAATCCAGATC+TGG | - | chr1.1:50490171-50490190 | MS.gene038001:intron | 35.0% | |
| ATATGTCAATTAAGACGGGT+AGG | - | chr1.1:50489707-50489726 | MS.gene038001:intron | 35.0% | |
| CACTTATGAATACAAACCTG+GGG | + | chr1.1:50488366-50488385 | None:intergenic | 35.0% | |
| CATTAATAAACAGTGCACAC+TGG | - | chr1.1:50488326-50488345 | MS.gene038001:intron | 35.0% | |
| CCTGAATTTCTGTAATCTCA+CGG | + | chr1.1:50490571-50490590 | None:intergenic | 35.0% | |
| CGGCTCCATTATTTAATCTT+TGG | - | chr1.1:50490981-50491000 | MS.gene038001:intron | 35.0% | |
| GAACGGTTACATTATACGAT+TGG | - | chr1.1:50487713-50487732 | MS.gene038001:CDS | 35.0% | |
| GAAGAGTAAACACAATGTCT+GGG | - | chr1.1:50489926-50489945 | MS.gene038001:CDS | 35.0% | |
| GACACTTATGAATACAAACC+TGG | + | chr1.1:50488368-50488387 | None:intergenic | 35.0% | |
| GACTTTAATAGTATGCAACC+TGG | + | chr1.1:50488903-50488922 | None:intergenic | 35.0% | |
| GAGATTACAGAAATTCAGGA+AGG | - | chr1.1:50490572-50490591 | MS.gene038001:CDS | 35.0% | |
| GATATAGAGACTGTAGGTAT+AGG | + | chr1.1:50489146-50489165 | None:intergenic | 35.0% | |
| GCTTTACTAGAAACAATGTC+AGG | - | chr1.1:50487931-50487950 | MS.gene038001:intron | 35.0% | |
| GGGTTTAACATTATGTATCC+GGG | + | chr1.1:50489773-50489792 | None:intergenic | 35.0% | |
| GGTTGTGGAAAATCATGATT+TGG | - | chr1.1:50489419-50489438 | MS.gene038001:CDS | 35.0% | |
| GTAAAAATAGACGTAGTACC+AGG | - | chr1.1:50488882-50488901 | MS.gene038001:CDS | 35.0% | |
| GTTAGAGAACAATCAGAAAC+CGG | - | chr1.1:50488547-50488566 | MS.gene038001:intron | 35.0% | |
| TAGTTGGGCAGAGATAATTA+CGG | + | chr1.1:50490739-50490758 | None:intergenic | 35.0% | |
| TATCAAGGAACTTTCTCTGA+CGG | - | chr1.1:50488613-50488632 | MS.gene038001:intron | 35.0% | |
| TATGTCAATTAAGACGGGTA+GGG | - | chr1.1:50489708-50489727 | MS.gene038001:intron | 35.0% | |
| TCTTCTGTAAAATCTCCTCA+AGG | - | chr1.1:50490081-50490100 | MS.gene038001:intron | 35.0% | |
| TGACGAGAATACTTACTTTG+TGG | + | chr1.1:50487797-50487816 | None:intergenic | 35.0% | |
| TGATACATTATCAGGAACAG+CGG | + | chr1.1:50489448-50489467 | None:intergenic | 35.0% | |
| TGATATCTTCAACAACCTAC+TGG | - | chr1.1:50490489-50490508 | MS.gene038001:CDS | 35.0% | |
| TTATCAGGAACAACAGTAAC+CGG | + | chr1.1:50489028-50489047 | None:intergenic | 35.0% | |
| TTCTCACTAATACCTAACTG+AGG | - | chr1.1:50490769-50490788 | MS.gene038001:intron | 35.0% | |
| TTGTACTTGTAGTCTTCAGT+GGG | - | chr1.1:50491074-50491093 | MS.gene038001:CDS | 35.0% | |
| TTTAATTGTTGTCGCAGCTT+CGG | - | chr1.1:50489173-50489192 | MS.gene038001:CDS | 35.0% | |
| TTTAGAGGCTCTTCATCATT+GGG | - | chr1.1:50490614-50490633 | MS.gene038001:intron | 35.0% | |
| ! | ATGATTTTCCACAACCTTCA+AGG | + | chr1.1:50489415-50489434 | None:intergenic | 35.0% |
| ! | CTTTTTACATTTTACCGTCC+AGG | - | chr1.1:50490544-50490563 | MS.gene038001:CDS | 35.0% |
| ! | GGTTTTTGCTGAAAAGGTTT+TGG | + | chr1.1:50489983-50490002 | None:intergenic | 35.0% |
| ! | TCAAGCTAATGCAAAAGCAT+AGG | - | chr1.1:50488092-50488111 | MS.gene038001:intron | 35.0% |
| ! | TCCTACTTCTTTGTTATCAC+CGG | - | chr1.1:50489636-50489655 | MS.gene038001:intron | 35.0% |
| ! | TCTTCCCTTTTGTGATTGAA+CGG | + | chr1.1:50489911-50489930 | None:intergenic | 35.0% |
| !! | AGATTTGCTGGTACATTATC+AGG | + | chr1.1:50489043-50489062 | None:intergenic | 35.0% |
| !! | GATATTTCTGGAAGATTTGC+TGG | + | chr1.1:50489055-50489074 | None:intergenic | 35.0% |
| !! | GTTTGGGTTATTTTGTAGGA+AGG | - | chr1.1:50490407-50490426 | MS.gene038001:intron | 35.0% |
| !! | TTTTAGAGGCTCTTCATCAT+TGG | - | chr1.1:50490613-50490632 | MS.gene038001:intron | 35.0% |
| !!! | TTTTTGAGACTCAATGACTC+TGG | + | chr1.1:50490162-50490181 | None:intergenic | 35.0% |
| AAACAGTGCACACTGGATAA+TGG | - | chr1.1:50488333-50488352 | MS.gene038001:intron | 40.0% | |
| AAAGTCCATTCCTACTTCGT+CGG | - | chr1.1:50488757-50488776 | MS.gene038001:CDS | 40.0% | |
| AATGGAGTCTTGCAATTCTC+TGG | + | chr1.1:50488800-50488819 | None:intergenic | 40.0% | |
| ACACCCGTTCAATCACAAAA+GGG | - | chr1.1:50489904-50489923 | MS.gene038001:CDS | 40.0% | |
| AGAACAAAGAAGCAAGCAGA+TGG | + | chr1.1:50487839-50487858 | None:intergenic | 40.0% | |
| AGAAGAAGAAGAAGAAGGTG+TGG | + | chr1.1:50487683-50487702 | None:intergenic | 40.0% | |
| AGTCCTTAGTACTATGCAAC+CGG | + | chr1.1:50489329-50489348 | None:intergenic | 40.0% | |
| AGTCTCAAAGAAGATGAGTG+GGG | - | chr1.1:50488838-50488857 | MS.gene038001:CDS | 40.0% | |
| AGTGAGGTCAACGATATTCA+TGG | - | chr1.1:50489279-50489298 | MS.gene038001:intron | 40.0% | |
| AGTTGGGCAGAGATAATTAC+GGG | + | chr1.1:50490738-50490757 | None:intergenic | 40.0% | |
| ATATACCATCGACAGTCTCA+AGG | + | chr1.1:50488287-50488306 | None:intergenic | 40.0% | |
| ATGGAGTCTTGCAATTCTCT+GGG | + | chr1.1:50488799-50488818 | None:intergenic | 40.0% | |
| CCGTGAGATTACAGAAATTC+AGG | - | chr1.1:50490568-50490587 | MS.gene038001:CDS | 40.0% | |
| CGGGATATGTCAATTAAGAC+GGG | - | chr1.1:50489703-50489722 | MS.gene038001:intron | 40.0% | |
| CGGTTACATTATACGATTGG+TGG | - | chr1.1:50487716-50487735 | MS.gene038001:CDS | 40.0% | |
| CGTATAATGTAACCGTTCGT+TGG | + | chr1.1:50487711-50487730 | None:intergenic | 40.0% | |
| CTGGTAACATAATCATGAGC+CGG | + | chr1.1:50491149-50491168 | None:intergenic | 40.0% | |
| CTGTAAAATCTCCTCAAGGA+AGG | - | chr1.1:50490085-50490104 | MS.gene038001:intron | 40.0% | |
| GAATGTAAGTCACTCGAACA+AGG | - | chr1.1:50490107-50490126 | MS.gene038001:intron | 40.0% | |
| GGAAGAGTAAACACAATGTC+TGG | - | chr1.1:50489925-50489944 | MS.gene038001:CDS | 40.0% | |
| GTCAACGATATTCATGGTAG+TGG | - | chr1.1:50489285-50489304 | MS.gene038001:intron | 40.0% | |
| GTCAATGTTGTTCATGGTAG+TGG | - | chr1.1:50489730-50489749 | MS.gene038001:intron | 40.0% | |
| GTTGATATTGCTTGTGGTAG+TGG | - | chr1.1:50488860-50488879 | MS.gene038001:CDS | 40.0% | |
| GTTGTACTTGTAGTCTTCAG+TGG | - | chr1.1:50491073-50491092 | MS.gene038001:CDS | 40.0% | |
| TATACCATCGACAGTCTCAA+GGG | + | chr1.1:50488286-50488305 | None:intergenic | 40.0% | |
| TCCGGTGATAACAAAGAAGT+AGG | + | chr1.1:50489640-50489659 | None:intergenic | 40.0% | |
| TCGGGACGATAATTCAAGAT+AGG | + | chr1.1:50491046-50491065 | None:intergenic | 40.0% | |
| TCTAACATTGGACTTGGATC+TGG | + | chr1.1:50491168-50491187 | None:intergenic | 40.0% | |
| TCTTTATCTGGATGTGTTGC+AGG | + | chr1.1:50489826-50489845 | None:intergenic | 40.0% | |
| TCTTTCTCTGGATTCTTGAG+AGG | + | chr1.1:50489381-50489400 | None:intergenic | 40.0% | |
| TGACTTACATTCCTTCCTTG+AGG | + | chr1.1:50490099-50490118 | None:intergenic | 40.0% | |
| TGAGACTTTGCATTCATCTC+CGG | + | chr1.1:50488825-50488844 | None:intergenic | 40.0% | |
| TGATTGCGCCAAAACTCTAA+GGG | + | chr1.1:50490445-50490464 | None:intergenic | 40.0% | |
| TGGCTCGTTAAATCATCTCA+AGG | - | chr1.1:50487736-50487755 | MS.gene038001:intron | 40.0% | |
| TTATCACCGGATAAGACCAT+GGG | - | chr1.1:50489649-50489668 | MS.gene038001:intron | 40.0% | |
| TTCTTCTTGCTTCCAACGAA+CGG | - | chr1.1:50487696-50487715 | MS.gene038001:CDS | 40.0% | |
| TTGATTGCGCCAAAACTCTA+AGG | + | chr1.1:50490446-50490465 | None:intergenic | 40.0% | |
| ! | AACCGGATCATGATTTTCGA+CGG | + | chr1.1:50489011-50489030 | None:intergenic | 40.0% |
| ! | AAGAAGAAGAAGAAGGTGTG+GGG | + | chr1.1:50487681-50487700 | None:intergenic | 40.0% |
| ! | AGATTAAATAATGGAGCCGG+TGG | + | chr1.1:50490980-50490999 | None:intergenic | 40.0% |
| ! | CTTCCCTTTTGTGATTGAAC+GGG | + | chr1.1:50489910-50489929 | None:intergenic | 40.0% |
| ! | GAAGAAGAAGAAGAAGGTGT+GGG | + | chr1.1:50487682-50487701 | None:intergenic | 40.0% |
| ! | GATTAAATAATGGAGCCGGT+GGG | + | chr1.1:50490979-50490998 | None:intergenic | 40.0% |
| ! | GGAGATTTTACAGAAGATGC+AGG | + | chr1.1:50490078-50490097 | None:intergenic | 40.0% |
| ! | TTCTACCTCCCTTAGAGTTT+TGG | - | chr1.1:50490434-50490453 | MS.gene038001:intron | 40.0% |
| !! | AATGTTGTTCATGGTAGTGG+CGG | - | chr1.1:50489733-50489752 | MS.gene038001:intron | 40.0% |
| !! | ATCAGAAACCGGTACTGATT+CGG | - | chr1.1:50488558-50488577 | MS.gene038001:intron | 40.0% |
| !! | TGGGTTATTTTGTAGGAAGG+TGG | - | chr1.1:50490410-50490429 | MS.gene038001:intron | 40.0% |
| AACGTAGAAGTCTAACCCAC+CGG | - | chr1.1:50490961-50490980 | MS.gene038001:intron | 45.0% | |
| AATTGCAAGACTCCATTCCC+CGG | - | chr1.1:50488803-50488822 | MS.gene038001:CDS | 45.0% | |
| ACATATCCCGTTCATCTTCG+AGG | + | chr1.1:50489693-50489712 | None:intergenic | 45.0% | |
| AGACTTTGCATTCATCTCCG+GGG | + | chr1.1:50488823-50488842 | None:intergenic | 45.0% | |
| AGTAAACACAATGTCTGGGC+AGG | - | chr1.1:50489930-50489949 | MS.gene038001:CDS | 45.0% | |
| CAATACCGACGAAGTAGGAA+TGG | + | chr1.1:50488765-50488784 | None:intergenic | 45.0% | |
| CTAACTGAGGTTCGGAAGAA+GGG | - | chr1.1:50490782-50490801 | MS.gene038001:intron | 45.0% | |
| GACACCCGTTCAATCACAAA+AGG | - | chr1.1:50489903-50489922 | MS.gene038001:CDS | 45.0% | |
| GAGACTTTGCATTCATCTCC+GGG | + | chr1.1:50488824-50488843 | None:intergenic | 45.0% | |
| GGCGACAATTGAAACAGAAG+CGG | - | chr1.1:50490026-50490045 | MS.gene038001:CDS | 45.0% | |
| GGGGTGCAATTAGAAGAACT+GGG | + | chr1.1:50487661-50487680 | None:intergenic | 45.0% | |
| GGTAGGGTCAATGTTGTTCA+TGG | - | chr1.1:50489724-50489743 | MS.gene038001:intron | 45.0% | |
| GTTATCACCGGATAAGACCA+TGG | - | chr1.1:50489648-50489667 | MS.gene038001:intron | 45.0% | |
| TCCTCCATCAGTCATTTCCA+AGG | + | chr1.1:50489869-50489888 | None:intergenic | 45.0% | |
| TCTTCATCTGAACGCTTGAG+AGG | + | chr1.1:50488968-50488987 | None:intergenic | 45.0% | |
| TGGAGTCTTGCAATTCTCTG+GGG | + | chr1.1:50488798-50488817 | None:intergenic | 45.0% | |
| TGTTTCATTGCTACCCCTGA+TGG | - | chr1.1:50488432-50488451 | MS.gene038001:intron | 45.0% | |
| TTACTTTGTGGAAGAGACGC+CGG | + | chr1.1:50487785-50487804 | None:intergenic | 45.0% | |
| TTCAAATGTTGTCGCAGCTG+TGG | - | chr1.1:50489603-50489622 | MS.gene038001:CDS | 45.0% | |
| TTTCTGTAATCTCACGGTCC+TGG | + | chr1.1:50490565-50490584 | None:intergenic | 45.0% | |
| ! | AGAAGAAGAAGAAGGTGTGG+GGG | + | chr1.1:50487680-50487699 | None:intergenic | 45.0% |
| ! | ATGATTTTCGACGGCCTTTG+AGG | + | chr1.1:50489002-50489021 | None:intergenic | 45.0% |
| ! | CAATGACTCTGGAGAAACTG+TGG | + | chr1.1:50490151-50490170 | None:intergenic | 45.0% |
| ! | GCAGAGATCTGGTCTTTATC+TGG | + | chr1.1:50489838-50489857 | None:intergenic | 45.0% |
| !! | ACGATATTCATGGTAGTGGC+CGG | - | chr1.1:50489289-50489308 | MS.gene038001:intron | 45.0% |
| !! | AGTGGGGTTGATATTGCTTG+TGG | - | chr1.1:50488854-50488873 | MS.gene038001:CDS | 45.0% |
| !! | ATGTTGTTCATGGTAGTGGC+GGG | - | chr1.1:50489734-50489753 | MS.gene038001:intron | 45.0% |
| !! | ATTCAGAGAAGAAGCGCTTC+GGG | - | chr1.1:50488218-50488237 | MS.gene038001:CDS | 45.0% |
| !! | GATTCAGAGAAGAAGCGCTT+CGG | - | chr1.1:50488217-50488236 | MS.gene038001:CDS | 45.0% |
| !! | GGATAATGGTTTTACTCCCC+AGG | - | chr1.1:50488347-50488366 | MS.gene038001:intron | 45.0% |
| !! | TAGCATTGGCTGAGAAGTGT+TGG | + | chr1.1:50490328-50490347 | None:intergenic | 45.0% |
| !! | TCAGAAACCGGTACTGATTC+GGG | - | chr1.1:50488559-50488578 | MS.gene038001:intron | 45.0% |
| !! | TGATTCGGGCAATGCTGTTT+TGG | - | chr1.1:50488573-50488592 | MS.gene038001:intron | 45.0% |
| AACCACCGTTTAGCCATCTC+CGG | - | chr1.1:50487763-50487782 | MS.gene038001:intron | 50.0% | |
| AGAGCAGAGCTCTACCTTGA+AGG | - | chr1.1:50489398-50489417 | MS.gene038001:CDS | 50.0% | |
| AGAGCCAAGCTCTACCTCAA+AGG | - | chr1.1:50488985-50489004 | MS.gene038001:CDS | 50.0% | |
| AGCAGGTTGCTTCTTCTGGT+AGG | + | chr1.1:50489794-50489813 | None:intergenic | 50.0% | |
| AGCATTGCCCGAATCAGTAC+CGG | + | chr1.1:50488569-50488588 | None:intergenic | 50.0% | |
| AGGCACTCCTCGAAGATGAA+CGG | - | chr1.1:50489683-50489702 | MS.gene038001:intron | 50.0% | |
| AGTCATTTCCAAGGCTGCTG+AGG | + | chr1.1:50489860-50489879 | None:intergenic | 50.0% | |
| CAGAAGAAGCAACCTGCTAC+TGG | - | chr1.1:50489796-50489815 | MS.gene038001:CDS | 50.0% | |
| CAGTAGCAGGTTGCTTCTTC+TGG | + | chr1.1:50489798-50489817 | None:intergenic | 50.0% | |
| CCTAACTGAGGTTCGGAAGA+AGG | - | chr1.1:50490781-50490800 | MS.gene038001:intron | 50.0% | |
| CCTTCTTCCGAACCTCAGTT+AGG | + | chr1.1:50490784-50490803 | None:intergenic | 50.0% | |
| GACCATGGGAGATCGCAATA+AGG | - | chr1.1:50489663-50489682 | MS.gene038001:intron | 50.0% | |
| GAGCTCTACCTTGAAGGTTG+TGG | - | chr1.1:50489404-50489423 | MS.gene038001:CDS | 50.0% | |
| GCAATCTCTCGTGACCAAAG+AGG | + | chr1.1:50489214-50489233 | None:intergenic | 50.0% | |
| GCAGAGATAATTACGGGCAG+AGG | + | chr1.1:50490732-50490751 | None:intergenic | 50.0% | |
| GCAGCCTTGGAAATGACTGA+TGG | - | chr1.1:50489862-50489881 | MS.gene038001:CDS | 50.0% | |
| GCAGGTTGCTTCTTCTGGTA+GGG | + | chr1.1:50489793-50489812 | None:intergenic | 50.0% | |
| GCCTTGGAAATGACTGATGG+AGG | - | chr1.1:50489865-50489884 | MS.gene038001:CDS | 50.0% | |
| GGAAATGACTGATGGAGGAC+TGG | - | chr1.1:50489870-50489889 | MS.gene038001:CDS | 50.0% | |
| GGCCGTCGAAAATCATGATC+CGG | - | chr1.1:50489006-50489025 | MS.gene038001:CDS | 50.0% | |
| GTAGAGCTCTGCTCTTTCTC+TGG | + | chr1.1:50489393-50489412 | None:intergenic | 50.0% | |
| GTTTCCCTTGAGACTGTCGA+TGG | - | chr1.1:50488279-50488298 | MS.gene038001:intron | 50.0% | |
| TCAGGCAATACCGACGAAGT+AGG | + | chr1.1:50488770-50488789 | None:intergenic | 50.0% | |
| TCTCTCGTGACCAAAGAGGT+AGG | + | chr1.1:50489210-50489229 | None:intergenic | 50.0% | |
| TGAGGTTCGGAAGAAGGGTA+GGG | - | chr1.1:50490787-50490806 | MS.gene038001:intron | 50.0% | |
| TGGCCGGTTGCATAGTACTA+AGG | - | chr1.1:50489323-50489342 | MS.gene038001:intron | 50.0% | |
| TGTAATCTCACGGTCCTGGA+CGG | + | chr1.1:50490561-50490580 | None:intergenic | 50.0% | |
| TTCGTCGGTATTGCCTGAAG+AGG | - | chr1.1:50488772-50488791 | MS.gene038001:CDS | 50.0% | |
| TTGAGAGGATCTCCATACGC+AGG | + | chr1.1:50489366-50489385 | None:intergenic | 50.0% | |
| TTGCATTCATCTCCGGGGAA+TGG | + | chr1.1:50488818-50488837 | None:intergenic | 50.0% | |
| ! | GGGGGTGCAATTAGAAGAAC+TGG | + | chr1.1:50487662-50487681 | None:intergenic | 50.0% |
| ! | TGCCTTATTGCGATCTCCCA+TGG | + | chr1.1:50489668-50489687 | None:intergenic | 50.0% |
| ! | TTGCGCCAAAACTCTAAGGG+AGG | + | chr1.1:50490442-50490461 | None:intergenic | 50.0% |
| !! | CGATCTCCCATGGTCTTATC+CGG | + | chr1.1:50489658-50489677 | None:intergenic | 50.0% |
| AAGCAGCATCCTACATCGCG+AGG | - | chr1.1:50488941-50488960 | MS.gene038001:CDS | 55.0% | |
| AGACGCCGGAGATGGCTAAA+CGG | + | chr1.1:50487771-50487790 | None:intergenic | 55.0% | |
| CAGAAGAAGCAGCCTGCGTA+TGG | - | chr1.1:50489351-50489370 | MS.gene038001:CDS | 55.0% | |
| CATACGCAGGCTGCTTCTTC+TGG | + | chr1.1:50489353-50489372 | None:intergenic | 55.0% | |
| CTGAGGTTCGGAAGAAGGGT+AGG | - | chr1.1:50490786-50490805 | MS.gene038001:intron | 55.0% | |
| GAGGCTCTTCATCATTGGGC+AGG | - | chr1.1:50490618-50490637 | MS.gene038001:intron | 55.0% | |
| GGCACTCCTCGAAGATGAAC+GGG | - | chr1.1:50489684-50489703 | MS.gene038001:intron | 55.0% | |
| GTTGCAGGATCTCCAGTAGC+AGG | + | chr1.1:50489811-50489830 | None:intergenic | 55.0% | |
| TTGAGAGGACCTCGCGATGT+AGG | + | chr1.1:50488953-50488972 | None:intergenic | 55.0% | |
| ! | CGCGATGTAGGATGCTGCTT+CGG | + | chr1.1:50488941-50488960 | None:intergenic | 55.0% |
| !! | ACGGCCTTTGAGGTAGAGCT+TGG | + | chr1.1:50488992-50489011 | None:intergenic | 55.0% |
| !! | CAATTCTCTGGGGCCTCTTC+AGG | + | chr1.1:50488788-50488807 | None:intergenic | 55.0% |
| ACCGGCCACTACGTCTAGTC+CGG | + | chr1.1:50489311-50489330 | None:intergenic | 60.0% | |
| AGGCTGCTGAGGCAGAGATC+TGG | + | chr1.1:50489849-50489868 | None:intergenic | 60.0% | |
| GATCTCTGCCTCAGCAGCCT+TGG | - | chr1.1:50489849-50489868 | MS.gene038001:CDS | 60.0% | |
| GCGGGAATAGACGTAGTGCC+CGG | - | chr1.1:50489752-50489771 | MS.gene038001:CDS | 60.0% | |
| TGTGGAAGAGACGCCGGAGA+TGG | + | chr1.1:50487779-50487798 | None:intergenic | 60.0% | |
| ! | AGTGGCCGGACTAGACGTAG+TGG | - | chr1.1:50489303-50489322 | MS.gene038001:intron | 60.0% |
| CGCCGGAGATGGCTAAACGG+TGG | + | chr1.1:50487768-50487787 | None:intergenic | 65.0% | |
| ! | GCCGGACTAGACGTAGTGGC+CGG | - | chr1.1:50489307-50489326 | MS.gene038001:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 50487643 | 50491191 | 50487643 | ID=MS.gene038001 |
| chr1.1 | mRNA | 50487643 | 50491191 | 50487643 | ID=MS.gene038001.t1;Parent=MS.gene038001 |
| chr1.1 | exon | 50491034 | 50491191 | 50491034 | ID=MS.gene038001.t1.exon1;Parent=MS.gene038001.t1 |
| chr1.1 | CDS | 50491034 | 50491191 | 50491034 | ID=cds.MS.gene038001.t1;Parent=MS.gene038001.t1 |
| chr1.1 | exon | 50490466 | 50490610 | 50490466 | ID=MS.gene038001.t1.exon2;Parent=MS.gene038001.t1 |
| chr1.1 | CDS | 50490466 | 50490610 | 50490466 | ID=cds.MS.gene038001.t1;Parent=MS.gene038001.t1 |
| chr1.1 | exon | 50490200 | 50490347 | 50490200 | ID=MS.gene038001.t1.exon3;Parent=MS.gene038001.t1 |
| chr1.1 | CDS | 50490200 | 50490347 | 50490200 | ID=cds.MS.gene038001.t1;Parent=MS.gene038001.t1 |
| chr1.1 | exon | 50489752 | 50490084 | 50489752 | ID=MS.gene038001.t1.exon4;Parent=MS.gene038001.t1 |
| chr1.1 | CDS | 50489752 | 50490084 | 50489752 | ID=cds.MS.gene038001.t1;Parent=MS.gene038001.t1 |
| chr1.1 | exon | 50489339 | 50489644 | 50489339 | ID=MS.gene038001.t1.exon5;Parent=MS.gene038001.t1 |
| chr1.1 | CDS | 50489339 | 50489644 | 50489339 | ID=cds.MS.gene038001.t1;Parent=MS.gene038001.t1 |
| chr1.1 | exon | 50488642 | 50489214 | 50488642 | ID=MS.gene038001.t1.exon6;Parent=MS.gene038001.t1 |
| chr1.1 | CDS | 50488642 | 50489214 | 50488642 | ID=cds.MS.gene038001.t1;Parent=MS.gene038001.t1 |
| chr1.1 | exon | 50488351 | 50488409 | 50488351 | ID=MS.gene038001.t1.exon7;Parent=MS.gene038001.t1 |
| chr1.1 | CDS | 50488351 | 50488409 | 50488351 | ID=cds.MS.gene038001.t1;Parent=MS.gene038001.t1 |
| chr1.1 | exon | 50488195 | 50488268 | 50488195 | ID=MS.gene038001.t1.exon8;Parent=MS.gene038001.t1 |
| chr1.1 | CDS | 50488195 | 50488268 | 50488195 | ID=cds.MS.gene038001.t1;Parent=MS.gene038001.t1 |
| chr1.1 | exon | 50487643 | 50487748 | 50487643 | ID=MS.gene038001.t1.exon9;Parent=MS.gene038001.t1 |
| chr1.1 | CDS | 50487643 | 50487748 | 50487643 | ID=cds.MS.gene038001.t1;Parent=MS.gene038001.t1 |
| Gene Sequence |
| Protein sequence |
