Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038061.t1 | XP_013468437.1 | 87.8 | 890 | 109 | 0 | 1 | 890 | 1 | 890 | 0.00E+00 | 1598.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038061.t1 | Q9SSE9 | 46.0 | 821 | 342 | 8 | 116 | 885 | 127 | 897 | 4.6e-203 | 709.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038061.t1 | A0A072VKD6 | 87.8 | 890 | 109 | 0 | 1 | 890 | 1 | 890 | 0.0e+00 | 1598.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038061.t1 | TR | Jumonji |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038061.t1 | MTR_1g069565 | 93.258 | 890 | 60 | 0 | 1 | 890 | 1 | 890 | 0.0 | 1653 |
| MS.gene038061.t1 | MTR_1g069565 | 86.589 | 947 | 70 | 3 | 1 | 890 | 1 | 947 | 0.0 | 1596 |
| MS.gene038061.t1 | MTR_1g114150 | 79.412 | 782 | 114 | 6 | 119 | 890 | 315 | 1059 | 0.0 | 1272 |
| MS.gene038061.t1 | MTR_1g114130 | 69.589 | 901 | 176 | 8 | 58 | 890 | 177 | 1047 | 0.0 | 1241 |
| MS.gene038061.t1 | MTR_1g114070 | 69.542 | 765 | 188 | 5 | 124 | 888 | 212 | 931 | 0.0 | 1079 |
| MS.gene038061.t1 | MTR_5g065200 | 63.835 | 871 | 226 | 10 | 27 | 883 | 41 | 836 | 0.0 | 1063 |
| MS.gene038061.t1 | MTR_1g114150 | 77.190 | 662 | 104 | 6 | 119 | 770 | 315 | 939 | 0.0 | 1040 |
| MS.gene038061.t1 | MTR_5g047620 | 69.265 | 680 | 186 | 8 | 207 | 882 | 138 | 798 | 0.0 | 940 |
| MS.gene038061.t1 | MTR_0020s0100 | 64.103 | 663 | 182 | 10 | 207 | 864 | 80 | 691 | 0.0 | 829 |
| MS.gene038061.t1 | MTR_7g117445 | 42.654 | 912 | 421 | 24 | 65 | 888 | 36 | 933 | 0.0 | 666 |
| MS.gene038061.t1 | MTR_7g117445 | 42.810 | 904 | 415 | 24 | 65 | 880 | 36 | 925 | 0.0 | 664 |
| MS.gene038061.t1 | MTR_7g117445 | 42.810 | 904 | 415 | 24 | 65 | 880 | 36 | 925 | 0.0 | 664 |
| MS.gene038061.t1 | MTR_4g132540 | 47.122 | 747 | 334 | 15 | 144 | 879 | 168 | 864 | 0.0 | 640 |
| MS.gene038061.t1 | MTR_2g024270 | 47.568 | 740 | 310 | 13 | 143 | 879 | 153 | 817 | 0.0 | 620 |
| MS.gene038061.t1 | MTR_2g024140 | 45.087 | 743 | 312 | 12 | 143 | 879 | 33 | 685 | 0.0 | 592 |
| MS.gene038061.t1 | MTR_7g117445 | 41.351 | 844 | 393 | 24 | 65 | 820 | 36 | 865 | 0.0 | 587 |
| MS.gene038061.t1 | MTR_1g083120 | 37.417 | 751 | 400 | 20 | 144 | 880 | 198 | 892 | 8.55e-148 | 460 |
| MS.gene038061.t1 | MTR_1g083120 | 37.367 | 752 | 401 | 20 | 143 | 880 | 214 | 909 | 1.25e-147 | 460 |
| MS.gene038061.t1 | MTR_1g008060 | 45.693 | 534 | 253 | 11 | 140 | 669 | 866 | 1366 | 2.56e-133 | 437 |
| MS.gene038061.t1 | MTR_1g008060 | 72.059 | 136 | 38 | 0 | 735 | 870 | 1551 | 1686 | 1.75e-58 | 219 |
| MS.gene038061.t1 | MTR_1g008060 | 45.693 | 534 | 253 | 11 | 140 | 669 | 857 | 1357 | 2.61e-133 | 437 |
| MS.gene038061.t1 | MTR_1g008060 | 72.059 | 136 | 38 | 0 | 735 | 870 | 1542 | 1677 | 1.83e-58 | 219 |
| MS.gene038061.t1 | MTR_2g011630 | 34.407 | 776 | 451 | 15 | 144 | 884 | 207 | 959 | 1.94e-130 | 416 |
| MS.gene038061.t1 | MTR_1g083120 | 37.085 | 693 | 366 | 20 | 144 | 822 | 198 | 834 | 5.20e-130 | 411 |
| MS.gene038061.t1 | MTR_1g083120 | 37.085 | 693 | 366 | 20 | 144 | 822 | 198 | 834 | 1.26e-129 | 410 |
| MS.gene038061.t1 | MTR_2g011630 | 34.199 | 693 | 400 | 12 | 226 | 884 | 45 | 715 | 3.10e-118 | 376 |
| MS.gene038061.t1 | MTR_2g011630 | 34.199 | 693 | 400 | 12 | 226 | 884 | 77 | 747 | 1.00e-117 | 376 |
| MS.gene038061.t1 | MTR_8g062940 | 50.000 | 398 | 161 | 6 | 113 | 510 | 8 | 367 | 4.14e-116 | 358 |
| MS.gene038061.t1 | MTR_2g024240 | 53.086 | 324 | 103 | 3 | 521 | 844 | 114 | 388 | 5.89e-107 | 336 |
| MS.gene038061.t1 | MTR_4g091520 | 36.898 | 561 | 297 | 14 | 367 | 880 | 727 | 1277 | 3.25e-97 | 332 |
| MS.gene038061.t1 | MTR_4g091520 | 35.556 | 180 | 106 | 4 | 139 | 309 | 255 | 433 | 3.19e-27 | 120 |
| MS.gene038061.t1 | MTR_8g013920 | 70.414 | 169 | 31 | 3 | 546 | 714 | 40 | 189 | 1.40e-61 | 207 |
| MS.gene038061.t1 | MTR_4g091520 | 33.895 | 475 | 257 | 14 | 367 | 794 | 657 | 1121 | 1.53e-61 | 227 |
| MS.gene038061.t1 | MTR_4g091520 | 35.556 | 180 | 106 | 4 | 139 | 309 | 255 | 433 | 2.53e-27 | 120 |
| MS.gene038061.t1 | MTR_4g091520 | 33.895 | 475 | 257 | 14 | 367 | 794 | 692 | 1156 | 2.00e-61 | 227 |
| MS.gene038061.t1 | MTR_4g091520 | 35.556 | 180 | 106 | 4 | 139 | 309 | 255 | 433 | 2.26e-27 | 120 |
| MS.gene038061.t1 | MTR_4g091520 | 33.895 | 475 | 257 | 14 | 367 | 794 | 727 | 1191 | 2.39e-61 | 227 |
| MS.gene038061.t1 | MTR_4g091520 | 35.556 | 180 | 106 | 4 | 139 | 309 | 255 | 433 | 3.06e-27 | 120 |
| MS.gene038061.t1 | MTR_0295s0020 | 60.976 | 164 | 64 | 0 | 512 | 675 | 12 | 175 | 6.01e-59 | 199 |
| MS.gene038061.t1 | MTR_8g465700 | 52.247 | 178 | 81 | 1 | 456 | 633 | 4 | 177 | 1.06e-55 | 194 |
| MS.gene038061.t1 | MTR_8g465720 | 77.528 | 89 | 19 | 1 | 734 | 822 | 52 | 139 | 1.80e-42 | 152 |
| MS.gene038061.t1 | MTR_3g080750 | 69.841 | 63 | 19 | 0 | 633 | 695 | 86 | 148 | 9.44e-21 | 90.1 |
| MS.gene038061.t1 | MTR_6g051930 | 89.655 | 29 | 3 | 0 | 275 | 303 | 45 | 73 | 7.18e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038061.t1 | AT3G07610 | 43.384 | 922 | 400 | 11 | 27 | 885 | 35 | 897 | 0.0 | 712 |
| MS.gene038061.t1 | AT3G07610 | 42.295 | 941 | 405 | 13 | 27 | 885 | 35 | 919 | 0.0 | 692 |
| MS.gene038061.t1 | AT1G11950 | 48.988 | 741 | 308 | 13 | 144 | 879 | 193 | 868 | 0.0 | 688 |
| MS.gene038061.t1 | AT1G11950 | 48.988 | 741 | 308 | 13 | 144 | 879 | 193 | 868 | 0.0 | 688 |
| MS.gene038061.t1 | AT1G62310 | 49.108 | 729 | 313 | 12 | 144 | 868 | 209 | 883 | 0.0 | 680 |
| MS.gene038061.t1 | AT4G00990 | 43.918 | 781 | 366 | 16 | 142 | 879 | 78 | 829 | 0.0 | 605 |
| MS.gene038061.t1 | AT1G11950 | 46.736 | 674 | 289 | 13 | 144 | 812 | 193 | 801 | 0.0 | 585 |
| MS.gene038061.t1 | AT4G00990 | 42.603 | 730 | 347 | 16 | 142 | 828 | 78 | 778 | 1.07e-179 | 538 |
| MS.gene038061.t1 | AT4G00990 | 42.936 | 722 | 340 | 16 | 142 | 820 | 78 | 770 | 1.19e-178 | 535 |
| MS.gene038061.t1 | AT3G07610 | 40.089 | 676 | 322 | 9 | 27 | 639 | 35 | 690 | 6.86e-153 | 468 |
| MS.gene038061.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 206 | 891 | 3.77e-116 | 377 |
| MS.gene038061.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 206 | 891 | 3.77e-116 | 377 |
| MS.gene038061.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 220 | 905 | 7.99e-116 | 376 |
| MS.gene038061.t1 | AT1G09060 | 32.322 | 758 | 420 | 17 | 144 | 880 | 220 | 905 | 7.99e-116 | 376 |
| MS.gene038061.t1 | AT4G21430 | 28.791 | 521 | 320 | 9 | 140 | 657 | 223 | 695 | 2.05e-59 | 219 |
| MS.gene038061.t1 | AT4G21430 | 43.791 | 153 | 85 | 1 | 734 | 886 | 768 | 919 | 7.41e-35 | 144 |
Find 212 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGGTCATTGTTGGTTTC+TGG | 0.066287 | 1.2:+52583208 | None:intergenic |
| TTTAAATATTCTTCCAATTT+AGG | 0.124269 | 1.2:+52579937 | None:intergenic |
| AGTACATTGCTGACAATTAT+AGG | 0.182829 | 1.2:+52582066 | None:intergenic |
| TGATAAAGAAAATAGTTTAT+TGG | 0.211724 | 1.2:-52580016 | MS.gene038061:CDS |
| TTGCTCGTATGAAGCCTTTA+TGG | 0.217000 | 1.2:+52580113 | None:intergenic |
| GCTATGGTTTCTTGATTATC+AGG | 0.232645 | 1.2:+52584717 | None:intergenic |
| AATTTGCACCAATTCTTTAC+TGG | 0.236831 | 1.2:-52581119 | MS.gene038061:CDS |
| GAGAGAGGATGTACCTAAAT+TGG | 0.270507 | 1.2:-52579950 | MS.gene038061:CDS |
| GTCCTTATTGGTCTGTAATA+AGG | 0.273383 | 1.2:-52584264 | MS.gene038061:CDS |
| TCTGCAGACTTGTGATTTAC+TGG | 0.286546 | 1.2:+52578315 | None:intergenic |
| TTTCTGCCACGTTTCTTTGC+CGG | 0.291268 | 1.2:+52584657 | None:intergenic |
| AGTGTTCGATTTGTGGAAAA+TGG | 0.293306 | 1.2:-52580087 | MS.gene038061:CDS |
| TGAAGTGAAGCTGGATTCTA+AGG | 0.294563 | 1.2:-52580253 | MS.gene038061:CDS |
| ACAGCATCCTGGACATTTCT+TGG | 0.294851 | 1.2:+52583377 | None:intergenic |
| GATTGAAGATGTGTCCTTAT+TGG | 0.294904 | 1.2:-52584276 | MS.gene038061:CDS |
| TCACAATCATCATCGGCTTT+TGG | 0.295247 | 1.2:+52582378 | None:intergenic |
| CTTCGTGGTGGGAAGCTTCT+AGG | 0.295572 | 1.2:-52582576 | MS.gene038061:CDS |
| CTCGCCTGGACTGGCTTAAT+TGG | 0.302310 | 1.2:-52581085 | MS.gene038061:CDS |
| TGTTGCTGTTCAATGCATTC+AGG | 0.310113 | 1.2:+52584420 | None:intergenic |
| GCTGGAACTGAAGAAGATTA+AGG | 0.321087 | 1.2:-52584523 | MS.gene038061:CDS |
| TATGTTATACCTTCAGATTT+CGG | 0.328391 | 1.2:+52578836 | None:intergenic |
| TAATTCATCTTCTTCCATAA+AGG | 0.328727 | 1.2:-52580127 | MS.gene038061:CDS |
| GCAAAATAGTGTTCGATTTG+TGG | 0.335906 | 1.2:-52580094 | MS.gene038061:CDS |
| AAGAAAATAGTTTATTGGTT+GGG | 0.336358 | 1.2:-52580011 | MS.gene038061:CDS |
| TTTGTCTCTCCTGAAAATAT+TGG | 0.339057 | 1.2:-52578375 | MS.gene038061:CDS |
| TCTGGCTGTAAAACATCTTT+AGG | 0.339519 | 1.2:+52580915 | None:intergenic |
| ATTATCAAGCATGTCAATCT+TGG | 0.359732 | 1.2:+52580146 | None:intergenic |
| AGAAGCATTTCAGAGAGTTC+AGG | 0.360974 | 1.2:-52579915 | MS.gene038061:CDS |
| TTATCAACTTCTTTGAGCTC+TGG | 0.364253 | 1.2:+52580033 | None:intergenic |
| CTTTCCTCAAATAAATTAGA+AGG | 0.368022 | 1.2:+52581032 | None:intergenic |
| AAGAGGCTTAAGGAGGAGTA+TGG | 0.382059 | 1.2:-52579031 | MS.gene038061:intron |
| ATTCTTTAGACGGTGCTCTC+TGG | 0.384591 | 1.2:-52579984 | MS.gene038061:CDS |
| AGAAAATAGTTTATTGGTTG+GGG | 0.387608 | 1.2:-52580010 | MS.gene038061:CDS |
| GTGCTCTCTGGGATATCTTT+CGG | 0.394357 | 1.2:-52579972 | MS.gene038061:CDS |
| GGGAGCTACATGGTGATAAT+CGG | 0.399614 | 1.2:-52580179 | MS.gene038061:CDS |
| GCCTCCTTCTAATTTATTTG+AGG | 0.400880 | 1.2:-52581036 | MS.gene038061:CDS |
| CAAGTCTGCAGAGGACAAAT+TGG | 0.404949 | 1.2:-52578304 | MS.gene038061:CDS |
| TGTGAAAACTATTGATTGCT+TGG | 0.405542 | 1.2:-52581953 | MS.gene038061:CDS |
| ATACCTTCAGATTTCGGACT+TGG | 0.410789 | 1.2:+52578842 | None:intergenic |
| TTCAATGGCACTGGAGCAAA+GGG | 0.413215 | 1.2:-52582092 | MS.gene038061:CDS |
| CTCAACCTCATGGTCATTGT+TGG | 0.418130 | 1.2:+52583201 | None:intergenic |
| TACATACCAACTGTTAATAC+AGG | 0.419767 | 1.2:+52584157 | None:intergenic |
| AATGTACTTGAATGTACATC+AGG | 0.426491 | 1.2:-52582051 | MS.gene038061:CDS |
| GTCCTTATTACAGACCAATA+AGG | 0.427034 | 1.2:+52584262 | None:intergenic |
| TCATCCAATCGTCTTAAATA+CGG | 0.427692 | 1.2:+52583148 | None:intergenic |
| TGGGTACACAAAGGCTCGCC+TGG | 0.428484 | 1.2:-52581099 | MS.gene038061:CDS |
| TCAAATAAAACGTCTGATCA+TGG | 0.431981 | 1.2:+52579068 | None:intergenic |
| TATGAACTCGGCACAATGAC+GGG | 0.437450 | 1.2:+52581004 | None:intergenic |
| AACAACACAGTTGCTTTCAC+AGG | 0.439858 | 1.2:-52584753 | MS.gene038061:CDS |
| CTGGAACTGAAGAAGATTAA+GGG | 0.442023 | 1.2:-52584522 | MS.gene038061:CDS |
| TTCTTTAGACGGTGCTCTCT+GGG | 0.443773 | 1.2:-52579983 | MS.gene038061:CDS |
| GGACTGGCTTAATTGGCCTC+AGG | 0.444813 | 1.2:-52581078 | MS.gene038061:CDS |
| ATTTACTCAGGAGCTTGGGC+GGG | 0.445696 | 1.2:-52580862 | MS.gene038061:CDS |
| TTGCAATTGCAAAGCATGCT+TGG | 0.446682 | 1.2:-52583349 | MS.gene038061:CDS |
| TTGTGTACCCAGTAAAGAAT+TGG | 0.446939 | 1.2:+52581111 | None:intergenic |
| TCTTGACCATTCACGAATCT+CGG | 0.449180 | 1.2:+52582440 | None:intergenic |
| ATGGATTTACTCAGGAGCTT+GGG | 0.449998 | 1.2:-52580866 | MS.gene038061:CDS |
| AATGTACATCAGGTTTAAGC+TGG | 0.453673 | 1.2:-52582041 | MS.gene038061:CDS |
| TATGGATTTACTCAGGAGCT+TGG | 0.456141 | 1.2:-52580867 | MS.gene038061:CDS |
| GATTATCTGCATGGTGGAAA+TGG | 0.456346 | 1.2:-52582510 | MS.gene038061:CDS |
| GACAAAATCAAGTGCAACCT+TGG | 0.456526 | 1.2:+52578392 | None:intergenic |
| TGAGAAGGAGTGAGCGTGCT+AGG | 0.457513 | 1.2:-52584596 | MS.gene038061:CDS |
| ATGTCAGATGCATTCAAAAC+AGG | 0.458193 | 1.2:+52582216 | None:intergenic |
| AGGAAGAAGAAGGTGGCAAT+TGG | 0.459943 | 1.2:-52584489 | MS.gene038061:CDS |
| TGAAATGCACGGAATGCAAC+CGG | 0.461269 | 1.2:-52584196 | MS.gene038061:CDS |
| GAAGTATGCTTCTCAGTTCA+AGG | 0.462341 | 1.2:+52582346 | None:intergenic |
| TTTACTCAGGAGCTTGGGCG+GGG | 0.464275 | 1.2:-52580861 | MS.gene038061:CDS |
| ACACAAAGGCTCGCCTGGAC+TGG | 0.464280 | 1.2:-52581094 | MS.gene038061:CDS |
| CTTTGTTGCTGCGAGCTTCG+TGG | 0.465758 | 1.2:-52582591 | MS.gene038061:CDS |
| GCTTGATCTGGTCGAGAAGT+TGG | 0.466266 | 1.2:-52577719 | MS.gene038061:CDS |
| ATTTGCACCAATTCTTTACT+GGG | 0.468225 | 1.2:-52581118 | MS.gene038061:CDS |
| AACAGATGTGGAGGAGGAGC+TGG | 0.469291 | 1.2:-52584541 | MS.gene038061:CDS |
| AAAGAAAATAGTTTATTGGT+TGG | 0.470270 | 1.2:-52580012 | MS.gene038061:CDS |
| ATTCGTGAATGGTCAAGATC+TGG | 0.470424 | 1.2:-52582435 | MS.gene038061:CDS |
| AGGGTATGCAAAATTTCTTC+CGG | 0.470503 | 1.2:+52584177 | None:intergenic |
| TGTTGATGCTGCCGCTCCTC+CGG | 0.475825 | 1.2:-52584676 | MS.gene038061:CDS |
| TTATCAAGCATGTCAATCTT+GGG | 0.478672 | 1.2:+52580147 | None:intergenic |
| GCCGATGATGATTGTGATCA+TGG | 0.480443 | 1.2:-52582372 | MS.gene038061:CDS |
| TCATATTGCTGAAGTGAAGC+TGG | 0.481347 | 1.2:-52580262 | MS.gene038061:CDS |
| ATGTCCTCCTCTTTCAAGTC+AGG | 0.481667 | 1.2:+52583402 | None:intergenic |
| ACGATTGGATGAAGAACAAA+TGG | 0.482210 | 1.2:-52583137 | MS.gene038061:CDS |
| AGCTTCATCAGGAGCAGCTA+TGG | 0.485026 | 1.2:+52584701 | None:intergenic |
| TGTGATTTACTGGAAGTTTG+CGG | 0.485220 | 1.2:+52578325 | None:intergenic |
| GGTTTCTTGATTATCAGGAA+TGG | 0.486545 | 1.2:+52584722 | None:intergenic |
| CCATTCACGAATCTCGGGTT+GGG | 0.489370 | 1.2:+52582446 | None:intergenic |
| AAGATAAACTCAAACTCGAT+TGG | 0.491141 | 1.2:+52582543 | None:intergenic |
| TATGTATGCTATGCTTGATC+TGG | 0.494282 | 1.2:-52577731 | MS.gene038061:CDS |
| TGATGAAATCAATGCTGCTC+AGG | 0.495231 | 1.2:-52584454 | MS.gene038061:CDS |
| TCTTCCGTATTTAAGACGAT+TGG | 0.495391 | 1.2:-52583152 | MS.gene038061:CDS |
| CTTGACCATTCACGAATCTC+GGG | 0.495468 | 1.2:+52582441 | None:intergenic |
| GATTTACTCAGGAGCTTGGG+CGG | 0.497247 | 1.2:-52580863 | MS.gene038061:CDS |
| GTAAAAGAAATGACAAGGGC+AGG | 0.498499 | 1.2:-52584223 | MS.gene038061:CDS |
| CAGCTTCTGAACAAAAGTCC+AGG | 0.502730 | 1.2:+52578900 | None:intergenic |
| CCTTCAGATTTCGGACTTGG+TGG | 0.506047 | 1.2:+52578845 | None:intergenic |
| AACAATTAAGCTTCAAGTTG+CGG | 0.506575 | 1.2:-52582274 | MS.gene038061:CDS |
| TGAAGAACAAATGGCTGAGA+AGG | 0.507808 | 1.2:-52583128 | MS.gene038061:CDS |
| GCATCAACAGAAGCTTCATC+AGG | 0.508288 | 1.2:+52584690 | None:intergenic |
| GGAGCTACATGGTGATAATC+GGG | 0.514858 | 1.2:-52580178 | MS.gene038061:CDS |
| TTTCAATGGCACTGGAGCAA+AGG | 0.515097 | 1.2:-52582093 | MS.gene038061:CDS |
| ACCATTCACGAATCTCGGGT+TGG | 0.516372 | 1.2:+52582445 | None:intergenic |
| GCTCCCTCTTGTCTTGCTCA+AGG | 0.519343 | 1.2:+52580196 | None:intergenic |
| GACATTGCCAAGAAATGTCC+AGG | 0.520062 | 1.2:-52583384 | MS.gene038061:CDS |
| ACTTGGTGGGGACAACCAGC+TGG | 0.521593 | 1.2:+52578859 | None:intergenic |
| AGATTAAGGGGAAACGTGGT+AGG | 0.523807 | 1.2:-52584509 | MS.gene038061:CDS |
| TACAGTTTACATAGGAACCT+TGG | 0.524108 | 1.2:+52577485 | None:intergenic |
| AAACTATTGATTGCTTGGAT+TGG | 0.524576 | 1.2:-52581948 | MS.gene038061:CDS |
| GCATACCCTGTATTAACAGT+TGG | 0.527233 | 1.2:-52584163 | MS.gene038061:intron |
| AGAACTTCTTATACTGTCCC+AGG | 0.529232 | 1.2:-52582149 | MS.gene038061:CDS |
| GAATATACAGATCCTTTCAA+TGG | 0.530031 | 1.2:-52580963 | MS.gene038061:CDS |
| GGACTCACCTGCACTTATCA+AGG | 0.530918 | 1.2:-52583328 | MS.gene038061:intron |
| CGATTTGTGGAAAATGGAAG+TGG | 0.534768 | 1.2:-52580081 | MS.gene038061:CDS |
| ATAAAACGTCTGATCATGGA+TGG | 0.535414 | 1.2:+52579072 | None:intergenic |
| CCATTGCTCTCCTTTAAAGC+AGG | 0.538406 | 1.2:-52579887 | MS.gene038061:intron |
| TTCAGATTTCGGACTTGGTG+GGG | 0.539205 | 1.2:+52578847 | None:intergenic |
| GGATCTGTATATTCTTTGAA+CGG | 0.541600 | 1.2:+52580972 | None:intergenic |
| ATGACGTAGATTTACTGCCC+TGG | 0.541910 | 1.2:+52582131 | None:intergenic |
| TTGCAATTACCACAGCATCC+TGG | 0.543302 | 1.2:+52583366 | None:intergenic |
| TATTGCTTATGGATTTACTC+AGG | 0.543506 | 1.2:-52580874 | MS.gene038061:CDS |
| CTGCCACGTTTCTTTGCCGG+AGG | 0.549368 | 1.2:+52584660 | None:intergenic |
| CGAGGGCGTGATTATCTGCA+TGG | 0.550325 | 1.2:-52582519 | MS.gene038061:CDS |
| CGGTGGAGACTTCTGATAGT+AGG | 0.550779 | 1.2:-52582254 | MS.gene038061:CDS |
| GACTTGTAGGAATTGAACCC+TGG | 0.555009 | 1.2:-52578918 | MS.gene038061:intron |
| GCTTGGTATTACGTATCTGA+CGG | 0.555671 | 1.2:+52581992 | None:intergenic |
| GAACTGACCTTGATAAGTGC+AGG | 0.556203 | 1.2:+52583321 | None:intergenic |
| ACAACACAGTTGCTTTCACA+GGG | 0.556589 | 1.2:-52584752 | MS.gene038061:CDS |
| CTTCAGATTTCGGACTTGGT+GGG | 0.557725 | 1.2:+52578846 | None:intergenic |
| TAAAACGTCTGATCATGGAT+GGG | 0.558437 | 1.2:+52579073 | None:intergenic |
| TGACGTAGATTTACTGCCCT+GGG | 0.558873 | 1.2:+52582132 | None:intergenic |
| AATGCACGCCACATGACAAA+CGG | 0.559884 | 1.2:+52582015 | None:intergenic |
| GAAATCAATGCTGCTCAGGA+GGG | 0.560506 | 1.2:-52584450 | MS.gene038061:CDS |
| GCTGGGAACCGTTTGTCATG+TGG | 0.563485 | 1.2:-52582023 | MS.gene038061:CDS |
| CTGGGATATCTTTCGGAGAG+AGG | 0.564748 | 1.2:-52579965 | MS.gene038061:CDS |
| AAATCAATGCTGCTCAGGAG+GGG | 0.565311 | 1.2:-52584449 | MS.gene038061:CDS |
| CACGAAGCTCGCAGCAACAA+AGG | 0.565525 | 1.2:+52582592 | None:intergenic |
| TGAAATCAATGCTGCTCAGG+AGG | 0.567663 | 1.2:-52584451 | MS.gene038061:CDS |
| GCACCTTGAGCAAGACAAGA+GGG | 0.570458 | 1.2:-52580199 | MS.gene038061:CDS |
| ACAGTATAAGAAGTTCTCAC+TGG | 0.571064 | 1.2:+52582155 | None:intergenic |
| AAGTGGAATATGTGATGAAA+AGG | 0.573587 | 1.2:-52580064 | MS.gene038061:CDS |
| GAGGCCAATTAAGCCAGTCC+AGG | 0.578924 | 1.2:+52581081 | None:intergenic |
| AATCAATGCTGCTCAGGAGG+GGG | 0.580226 | 1.2:-52584448 | MS.gene038061:CDS |
| GAATAGTAGATCGTTGAATG+AGG | 0.582028 | 1.2:-52584571 | MS.gene038061:CDS |
| TGTATATTCTTTGAACGGCA+AGG | 0.583089 | 1.2:+52580977 | None:intergenic |
| CCTGCTTTAAAGGAGAGCAA+TGG | 0.584616 | 1.2:+52579887 | None:intergenic |
| GAGTTTGAGTTTATCTTCCG+AGG | 0.584896 | 1.2:-52582537 | MS.gene038061:CDS |
| TGGAACTGAAGAAGATTAAG+GGG | 0.585226 | 1.2:-52584521 | MS.gene038061:CDS |
| GAAAATAGTTTATTGGTTGG+GGG | 0.586081 | 1.2:-52580009 | MS.gene038061:CDS |
| GTTGCTGCGAGCTTCGTGGT+GGG | 0.586137 | 1.2:-52582587 | MS.gene038061:CDS |
| GAAACGTGGTAGGAAGAAGA+AGG | 0.586757 | 1.2:-52584499 | MS.gene038061:CDS |
| ATATGAACTCGGCACAATGA+CGG | 0.586817 | 1.2:+52581003 | None:intergenic |
| AAGGTATCCTGACTTGAAAG+AGG | 0.587569 | 1.2:-52583409 | MS.gene038061:CDS |
| AGGTTTAGAACACCATTGAA+AGG | 0.588651 | 1.2:+52580951 | None:intergenic |
| CAAGACAAGAGGGAGCTACA+TGG | 0.591607 | 1.2:-52580189 | MS.gene038061:CDS |
| GTCTGCAGAGGACAAATTGG+AGG | 0.593405 | 1.2:-52578301 | MS.gene038061:intron |
| TGTTGCTGCGAGCTTCGTGG+TGG | 0.594415 | 1.2:-52582588 | MS.gene038061:CDS |
| TGATCTGGTCGAGAAGTTGG+AGG | 0.595507 | 1.2:-52577716 | MS.gene038061:CDS |
| TGATTGCTTGGATTGGTGTG+AGG | 0.595645 | 1.2:-52581941 | MS.gene038061:intron |
| ACTTGGAGAGCTCAACCTCA+TGG | 0.596456 | 1.2:+52583191 | None:intergenic |
| AAAACGTCTGATCATGGATG+GGG | 0.596952 | 1.2:+52579074 | None:intergenic |
| CCCAACCCGAGATTCGTGAA+TGG | 0.597529 | 1.2:-52582446 | MS.gene038061:CDS |
| AATTAAGCTTCAAGTTGCGG+TGG | 0.598915 | 1.2:-52582271 | MS.gene038061:CDS |
| ACGTTTCTTTGCCGGAGGAG+CGG | 0.599042 | 1.2:+52584665 | None:intergenic |
| CTTTAGGCAACTTCACAGCA+AGG | 0.600321 | 1.2:+52580931 | None:intergenic |
| AAGAAGGTGGCAATTGGTGT+CGG | 0.600696 | 1.2:-52584483 | MS.gene038061:CDS |
| ATGTACATCAGGTTTAAGCT+GGG | 0.604955 | 1.2:-52582040 | MS.gene038061:CDS |
| TTACTTAACAGATGTGGAGG+AGG | 0.605048 | 1.2:-52584547 | MS.gene038061:CDS |
| ACCATGATCACAATCATCAT+CGG | 0.605104 | 1.2:+52582371 | None:intergenic |
| CGAGTGCTTTCGTTTGACAG+AGG | 0.605461 | 1.2:-52578352 | MS.gene038061:CDS |
| GGCAGTAAATCTACGTCATG+AGG | 0.606103 | 1.2:-52582127 | MS.gene038061:CDS |
| TGAGGATTACTTAACAGATG+TGG | 0.606859 | 1.2:-52584553 | MS.gene038061:CDS |
| TAAAAGAAATGACAAGGGCA+GGG | 0.606870 | 1.2:-52584222 | MS.gene038061:CDS |
| TCCTCAAATAAATTAGAAGG+AGG | 0.607054 | 1.2:+52581035 | None:intergenic |
| TGGAATATGTGATGAAAAGG+TGG | 0.607337 | 1.2:-52580061 | MS.gene038061:CDS |
| AGTTTGAGTTTATCTTCCGA+GGG | 0.609136 | 1.2:-52582536 | MS.gene038061:CDS |
| GATACATCTACAGTTTACAT+AGG | 0.609345 | 1.2:+52577477 | None:intergenic |
| TCTTTCAGTTTCAAAACCTG+AGG | 0.609559 | 1.2:+52581062 | None:intergenic |
| AGCTTCTGAACAAAAGTCCA+GGG | 0.617796 | 1.2:+52578901 | None:intergenic |
| AGCACCTTGAGCAAGACAAG+AGG | 0.618569 | 1.2:-52580200 | MS.gene038061:CDS |
| GAGATAGAAGCAAAGAGACA+AGG | 0.619116 | 1.2:-52583106 | MS.gene038061:intron |
| TCGGGTTGGGCAGCAGCACG+AGG | 0.619296 | 1.2:+52582459 | None:intergenic |
| ATGCATTGAACAGCAACAGA+TGG | 0.621495 | 1.2:-52584415 | MS.gene038061:intron |
| AAAAGAGCGAAAGTGTGAGA+AGG | 0.622332 | 1.2:-52584611 | MS.gene038061:CDS |
| CGGCAAGGAAGATATGAACT+CGG | 0.631163 | 1.2:+52580992 | None:intergenic |
| TCGAGAAGTTGGAGGAAGCA+AGG | 0.632086 | 1.2:-52577708 | MS.gene038061:intron |
| GGATTACTTAACAGATGTGG+AGG | 0.635978 | 1.2:-52584550 | MS.gene038061:CDS |
| CATACACAATAGCACAAGGA+AGG | 0.637072 | 1.2:-52582196 | MS.gene038061:CDS |
| GCTCCTCCGGCAAAGAAACG+TGG | 0.637351 | 1.2:-52584663 | MS.gene038061:CDS |
| CATGCAGATAATCACGCCCT+CGG | 0.639805 | 1.2:+52582520 | None:intergenic |
| TTACAGGTCTGGAGAAACCA+AGG | 0.639931 | 1.2:-52577502 | MS.gene038061:intron |
| CCACCAAGTCCGAAATCTGA+AGG | 0.644909 | 1.2:-52578845 | MS.gene038061:intron |
| GAAGTGAAGCTGGATTCTAA+GGG | 0.652860 | 1.2:-52580252 | MS.gene038061:CDS |
| CTGACATACACAATAGCACA+AGG | 0.658068 | 1.2:-52582200 | MS.gene038061:CDS |
| GGGCAGGGTTGTGAAATGCA+CGG | 0.660572 | 1.2:-52584207 | MS.gene038061:CDS |
| GGATGGCTTGCAGACAGTGA+TGG | 0.662046 | 1.2:-52582414 | MS.gene038061:CDS |
| ATTCTTTACTGGGTACACAA+AGG | 0.662591 | 1.2:-52581108 | MS.gene038061:CDS |
| ATGAACTCGGCACAATGACG+GGG | 0.667242 | 1.2:+52581005 | None:intergenic |
| GTATCCTGACTTGAAAGAGG+AGG | 0.668706 | 1.2:-52583406 | MS.gene038061:CDS |
| TCAATGTAAAAGAAATGACA+AGG | 0.668906 | 1.2:-52584228 | MS.gene038061:CDS |
| CGTGGTGGGAAGCTTCTAGG+TGG | 0.669451 | 1.2:-52582573 | MS.gene038061:CDS |
| CTACATGGTGATAATCGGGA+CGG | 0.669945 | 1.2:-52580174 | MS.gene038061:CDS |
| GTGAATGGTCAAGATCTGGA+TGG | 0.677090 | 1.2:-52582431 | MS.gene038061:CDS |
| AGTAAATCACAAGTCTGCAG+AGG | 0.679551 | 1.2:-52578313 | MS.gene038061:CDS |
| ACATACCAACTGTTAATACA+GGG | 0.682457 | 1.2:+52584158 | None:intergenic |
| AAGAAATGTCCAGGATGCTG+TGG | 0.691596 | 1.2:-52583375 | MS.gene038061:CDS |
| GAACTTCTTATACTGTCCCA+GGG | 0.693482 | 1.2:-52582148 | MS.gene038061:CDS |
| GGGCGTGATTATCTGCATGG+TGG | 0.701277 | 1.2:-52582516 | MS.gene038061:CDS |
| CTGCATCTGACATATCACAA+TGG | 0.702155 | 1.2:+52580820 | None:intergenic |
| ACGTGGTAGGAAGAAGAAGG+TGG | 0.709702 | 1.2:-52584496 | MS.gene038061:CDS |
| AAGAAGATTAAGGGGAAACG+TGG | 0.711553 | 1.2:-52584513 | MS.gene038061:CDS |
| CAATGTAAAAGAAATGACAA+GGG | 0.715489 | 1.2:-52584227 | MS.gene038061:CDS |
| AGAAACCAACAATGACCATG+AGG | 0.730663 | 1.2:-52583206 | MS.gene038061:CDS |
| TCAATGGCACTGGAGCAAAG+GGG | 0.769506 | 1.2:-52582091 | MS.gene038061:CDS |
| CAACACAGTTGCTTTCACAG+GGG | 0.779411 | 1.2:-52584751 | MS.gene038061:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 52577491 | 52584799 | 52577491 | ID=MS.gene038061 |
| chr1.2 | mRNA | 52577491 | 52584799 | 52577491 | ID=MS.gene038061.t1;Parent=MS.gene038061 |
| chr1.2 | exon | 52584416 | 52584799 | 52584416 | ID=MS.gene038061.t1.exon1;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52584416 | 52584799 | 52584416 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52584164 | 52584300 | 52584164 | ID=MS.gene038061.t1.exon2;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52584164 | 52584300 | 52584164 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52583329 | 52583428 | 52583329 | ID=MS.gene038061.t1.exon3;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52583329 | 52583428 | 52583329 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52583107 | 52583245 | 52583107 | ID=MS.gene038061.t1.exon4;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52583107 | 52583245 | 52583107 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52582762 | 52582825 | 52582762 | ID=MS.gene038061.t1.exon5;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52582762 | 52582825 | 52582762 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52581942 | 52582683 | 52581942 | ID=MS.gene038061.t1.exon6;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52581942 | 52582683 | 52581942 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52580821 | 52581150 | 52580821 | ID=MS.gene038061.t1.exon7;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52580821 | 52581150 | 52580821 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52579888 | 52580298 | 52579888 | ID=MS.gene038061.t1.exon8;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52579888 | 52580298 | 52579888 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52579032 | 52579104 | 52579032 | ID=MS.gene038061.t1.exon9;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52579032 | 52579104 | 52579032 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52578846 | 52578931 | 52578846 | ID=MS.gene038061.t1.exon10;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52578846 | 52578931 | 52578846 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52578302 | 52578421 | 52578302 | ID=MS.gene038061.t1.exon11;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52578302 | 52578421 | 52578302 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52577709 | 52577767 | 52577709 | ID=MS.gene038061.t1.exon12;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52577709 | 52577767 | 52577709 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| chr1.2 | exon | 52577491 | 52577518 | 52577491 | ID=MS.gene038061.t1.exon13;Parent=MS.gene038061.t1 |
| chr1.2 | CDS | 52577491 | 52577518 | 52577491 | ID=cds.MS.gene038061.t1;Parent=MS.gene038061.t1 |
| Gene Sequence |
| Protein sequence |