AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038084

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038084.t1 MTR_1g069725 98.883 358 4 0 1 358 111 468 0.0 736
MS.gene038084.t1 MTR_7g074650 53.803 355 156 5 2 352 441 791 3.64e-128 386
MS.gene038084.t1 MTR_4g076020 47.486 358 165 6 2 352 87 428 2.02e-107 322
MS.gene038084.t1 MTR_7g027190 33.862 378 221 10 1 354 302 674 2.16e-59 203
MS.gene038084.t1 MTR_3g065980 33.952 377 213 9 1 352 174 539 5.09e-59 199
MS.gene038084.t1 MTR_4g102790 35.040 371 217 10 3 353 296 662 4.01e-54 189
MS.gene038084.t1 MTR_4g077760 33.607 366 221 10 2 352 196 554 5.05e-48 170
MS.gene038084.t1 MTR_2g082090 32.708 373 218 12 3 352 216 578 2.59e-47 169
MS.gene038084.t1 MTR_1g029420 32.267 375 219 12 2 352 228 591 2.46e-46 166
MS.gene038084.t1 MTR_3g089055 31.635 373 224 11 2 352 201 564 2.32e-44 160
MS.gene038084.t1 MTR_3g089055 31.635 373 224 11 2 352 206 569 2.33e-44 160
MS.gene038084.t1 MTR_3g072710 31.250 384 228 11 4 357 127 504 4.17e-44 159
MS.gene038084.t1 MTR_5g058860 31.842 380 231 9 1 354 121 498 9.28e-44 158
MS.gene038084.t1 MTR_4g133660 32.353 340 204 10 35 354 211 544 1.69e-42 155
MS.gene038084.t1 MTR_8g442410 32.632 380 216 11 1 352 157 524 1.67e-41 152
MS.gene038084.t1 MTR_1g096030 30.233 387 225 15 1 352 82 458 3.62e-41 150
MS.gene038084.t1 MTR_3g056110 30.270 370 231 12 3 352 179 541 2.66e-40 149
MS.gene038084.t1 MTR_4g104020 30.481 374 233 12 3 354 153 521 2.82e-40 149
MS.gene038084.t1 MTR_5g094450 30.645 372 231 12 3 352 165 531 3.56e-40 149
MS.gene038084.t1 MTR_2g097410 27.614 373 240 11 3 352 375 740 4.79e-39 147
MS.gene038084.t1 MTR_5g097480 30.000 370 232 11 3 352 181 543 7.51e-39 145
MS.gene038084.t1 MTR_7g062120 28.108 370 240 12 3 352 376 739 1.20e-36 140
MS.gene038084.t1 MTR_4g064150 27.467 375 240 12 3 352 365 732 1.08e-35 138
MS.gene038084.t1 MTR_3g022830 26.139 417 241 10 1 355 27 438 1.87e-35 134
MS.gene038084.t1 MTR_2g034280 28.342 374 242 10 1 352 205 574 2.01e-35 136
MS.gene038084.t1 MTR_4g064120 26.203 374 244 11 3 351 258 624 2.11e-35 136
MS.gene038084.t1 MTR_4g064180 26.471 374 243 11 3 351 258 624 5.72e-35 135
MS.gene038084.t1 MTR_2g034260 28.191 376 242 11 1 352 212 583 1.73e-34 134
MS.gene038084.t1 MTR_4g064160 28.841 371 236 13 3 352 320 683 3.39e-34 133
MS.gene038084.t1 MTR_4g064200 28.267 375 233 14 2 352 287 649 3.07e-33 130
MS.gene038084.t1 MTR_2g097310 28.726 369 241 11 1 352 274 637 4.37e-33 130
MS.gene038084.t1 MTR_2g034250 26.525 377 248 11 1 352 212 584 4.76e-33 129
MS.gene038084.t1 MTR_7g109580 27.473 364 245 9 4 352 194 553 7.02e-33 129
MS.gene038084.t1 MTR_4g076140 27.400 427 233 13 1 355 50 471 7.78e-33 127
MS.gene038084.t1 MTR_2g026250 27.811 338 222 9 35 354 264 597 1.40e-32 128
MS.gene038084.t1 MTR_4g097080 26.933 375 244 12 1 352 135 502 1.73e-30 121
MS.gene038084.t1 MTR_2g097350 27.100 369 247 11 1 352 276 639 2.40e-29 119
MS.gene038084.t1 MTR_2g097380 28.611 360 214 14 6 352 231 560 3.48e-29 118
MS.gene038084.t1 MTR_2g097467 25.806 372 245 12 2 352 292 653 7.33e-29 118
MS.gene038084.t1 MTR_2g097390 27.642 369 245 11 1 352 277 640 1.37e-28 117
MS.gene038084.t1 MTR_5g015490 27.559 381 240 15 1 352 116 489 5.22e-28 114
MS.gene038084.t1 MTR_2g089100 24.873 394 251 12 1 353 54 443 4.58e-27 111
MS.gene038084.t1 MTR_2g097473 26.016 369 248 13 2 352 292 653 1.26e-26 111
MS.gene038084.t1 MTR_8g093070 26.364 330 219 10 36 352 177 495 3.87e-26 109
MS.gene038084.t1 MTR_2g097463 25.543 368 251 12 2 352 293 654 1.08e-25 108
MS.gene038084.t1 MTR_5g009080 31.771 192 124 3 3 189 60 249 1.96e-24 104
MS.gene038084.t1 MTR_5g009080 34.437 151 95 4 207 355 332 480 1.04e-15 78.6
MS.gene038084.t1 MTR_2g099110 24.339 378 255 10 2 352 77 450 7.13e-24 102
MS.gene038084.t1 MTR_4g026485 24.725 364 235 11 9 354 283 625 7.75e-24 103
MS.gene038084.t1 MTR_7g057230 27.100 369 244 13 1 352 296 656 1.04e-20 94.0
MS.gene038084.t1 MTR_1g086970 24.927 341 233 11 32 352 140 477 2.17e-20 92.4
MS.gene038084.t1 MTR_0092s0100 26.902 368 243 15 1 354 374 729 1.20e-19 90.9
MS.gene038084.t1 MTR_0092s0100 26.902 368 243 15 1 354 377 732 1.23e-19 90.9
MS.gene038084.t1 MTR_6g047750 25.269 372 251 10 1 352 297 661 4.15e-19 89.0
MS.gene038084.t1 MTR_4g095500 23.317 416 246 15 1 352 61 467 5.74e-18 85.1
MS.gene038084.t1 MTR_5g015950 23.261 417 247 17 1 352 37 445 4.60e-17 82.4
MS.gene038084.t1 MTR_3g053270 23.261 417 247 17 1 352 37 445 4.60e-17 82.4
MS.gene038084.t1 MTR_8g020840 24.031 387 243 12 3 352 175 547 5.07e-15 76.6
MS.gene038084.t1 MTR_8g077940 23.826 298 205 10 69 354 255 542 8.47e-14 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038084.t1 AT3G54220 53.315 362 158 5 2 356 296 653 1.78e-129 385
MS.gene038084.t1 AT5G41920 47.671 365 174 7 1 355 45 402 5.05e-111 330
MS.gene038084.t1 AT1G14920 34.783 368 221 12 1 357 174 533 3.99e-57 194
MS.gene038084.t1 AT2G01570 34.511 368 222 10 1 357 226 585 7.54e-56 192
MS.gene038084.t1 AT1G66350 35.000 360 215 9 1 352 157 505 1.01e-55 190
MS.gene038084.t1 AT3G03450 33.884 363 222 11 3 352 187 544 3.87e-55 189
MS.gene038084.t1 AT5G17490 33.702 362 218 12 3 352 164 515 2.32e-52 181
MS.gene038084.t1 AT5G66770 33.693 371 216 13 2 352 223 583 9.06e-51 178
MS.gene038084.t1 AT1G63100 32.979 376 225 11 3 353 256 629 4.99e-48 172
MS.gene038084.t1 AT1G63100 32.979 376 225 11 3 353 281 654 7.61e-48 171
MS.gene038084.t1 AT3G50650 33.631 336 201 10 35 352 210 541 8.87e-45 161
MS.gene038084.t1 AT2G04890 31.044 364 229 11 3 352 57 412 3.07e-43 155
MS.gene038084.t1 AT1G55580 33.108 296 180 7 74 352 150 444 1.34e-42 154
MS.gene038084.t1 AT5G48150 29.459 370 235 11 3 352 126 489 1.99e-38 143
MS.gene038084.t1 AT5G48150 29.459 370 235 11 3 352 126 489 1.99e-38 143
MS.gene038084.t1 AT5G48150 29.459 370 235 11 3 352 126 489 1.99e-38 143
MS.gene038084.t1 AT5G48150 29.459 370 235 11 3 352 126 489 1.99e-38 143
MS.gene038084.t1 AT1G50600 30.376 372 230 11 2 352 162 525 2.36e-38 144
MS.gene038084.t1 AT1G50600 30.376 372 230 11 2 352 233 596 5.29e-38 144
MS.gene038084.t1 AT1G50600 30.376 372 230 11 2 352 237 600 5.47e-38 144
MS.gene038084.t1 AT1G21450 31.267 371 227 11 3 352 229 592 2.13e-37 142
MS.gene038084.t1 AT1G07530 29.067 375 241 12 3 357 400 769 1.07e-36 141
MS.gene038084.t1 AT1G07520 26.738 374 249 9 3 353 158 529 1.46e-36 139
MS.gene038084.t1 AT1G07520 26.738 374 249 9 3 353 158 529 1.46e-36 139
MS.gene038084.t1 AT1G07520 26.738 374 249 9 3 353 323 694 8.87e-36 138
MS.gene038084.t1 AT1G07520 26.738 374 249 9 3 353 322 693 9.01e-36 138
MS.gene038084.t1 AT2G29065 27.704 379 238 11 3 352 256 627 3.38e-35 136
MS.gene038084.t1 AT4G08250 29.006 362 230 11 18 358 128 483 9.92e-35 133
MS.gene038084.t1 AT2G29060 26.882 372 249 10 1 352 323 691 4.94e-33 130
MS.gene038084.t1 AT2G29060 26.882 372 249 10 1 352 286 654 5.05e-33 130
MS.gene038084.t1 AT5G59450 26.330 376 244 13 2 352 230 597 5.23e-33 129
MS.gene038084.t1 AT4G17230 29.570 372 235 11 1 352 160 524 4.44e-32 126
MS.gene038084.t1 AT4G17230 29.570 372 235 11 1 352 160 524 4.44e-32 126
MS.gene038084.t1 AT3G46600 26.810 373 244 11 1 352 6 370 7.07e-32 123
MS.gene038084.t1 AT3G46600 26.810 373 244 11 1 352 214 578 1.43e-30 122
MS.gene038084.t1 AT3G46600 26.810 373 244 11 1 352 182 546 1.62e-30 122
MS.gene038084.t1 AT4G37650 25.773 388 245 14 1 352 148 528 2.99e-28 115
MS.gene038084.t1 AT5G52510 28.198 383 231 13 1 352 270 639 2.84e-26 110
MS.gene038084.t1 AT2G37650 24.324 370 256 11 1 352 337 700 2.36e-25 107
MS.gene038084.t1 AT2G37650 24.324 370 256 11 1 352 349 712 2.77e-25 107
MS.gene038084.t1 AT3G49950 25.393 382 249 13 1 352 32 407 2.76e-24 103
MS.gene038084.t1 AT2G45160 25.143 350 208 13 35 354 315 640 2.60e-20 92.8
MS.gene038084.t1 AT3G60630 26.797 306 195 10 68 354 328 623 9.46e-20 90.9
MS.gene038084.t1 AT1G50420 29.592 196 129 4 1 189 59 252 1.21e-19 90.5
MS.gene038084.t1 AT1G50420 34.694 147 88 5 213 355 339 481 4.03e-16 79.7
MS.gene038084.t1 AT4G00150 27.859 341 224 14 24 357 233 558 3.02e-19 89.4
MS.gene038084.t1 AT3G13840 25.594 379 232 15 3 352 152 509 9.04e-18 84.7
MS.gene038084.t1 AT4G36710 24.407 295 205 9 69 352 197 484 1.55e-15 78.2

Find 62 sgRNAs with CRISPR-Local

Find 75 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCCTATAGCATGTAAATT+TGG 0.224828 1.2:-52869183 MS.gene038084:CDS
TAGCATTCATATCATTGATT+TGG 0.267686 1.2:-52869376 MS.gene038084:CDS
ATGATCCAAGTGAATCAAAA+AGG 0.269992 1.2:+52868941 None:intergenic
TTTGAGACTTCTTGAAGAAT+TGG 0.271799 1.2:-52869055 MS.gene038084:CDS
GTTGGACTTGTAGAACTTCT+AGG 0.281331 1.2:-52868621 MS.gene038084:CDS
ATGTTTCCATGTTACAAATT+AGG 0.299869 1.2:-52869149 MS.gene038084:CDS
TCACCAAATTTACATGCTAT+AGG 0.333976 1.2:+52869180 None:intergenic
CACCAAATTTACATGCTATA+GGG 0.337950 1.2:+52869181 None:intergenic
GTGAAGAAAAGTTTAGGCTT+TGG 0.358361 1.2:-52868819 MS.gene038084:CDS
GCCATTGAATTAGCACTCAT+TGG 0.370427 1.2:+52868757 None:intergenic
GTTTGTATACTGCTTCTTGT+TGG 0.371179 1.2:-52868639 MS.gene038084:CDS
ATGAGACACTTGCAGTTCAT+TGG 0.379453 1.2:-52869122 MS.gene038084:CDS
TATAGTCTTGCTCAAGTTGA+TGG 0.384763 1.2:-52868691 MS.gene038084:CDS
TGCATAGTGATGATTCTAAC+AGG 0.385974 1.2:-52868915 MS.gene038084:CDS
CATTCTTTGTATGATTCAAC+TGG 0.386760 1.2:-52869093 MS.gene038084:CDS
CTCAAGTTGATGGCATGTTA+AGG 0.419170 1.2:-52868681 MS.gene038084:CDS
AATGTGAAAATTTGATGAAA+GGG 0.441329 1.2:+52869442 None:intergenic
ATCAACAATATATTAGCAAT+TGG 0.455848 1.2:-52868859 MS.gene038084:CDS
GAAGTGGTGAAGAAAAGTTT+AGG 0.462022 1.2:-52868825 MS.gene038084:CDS
GCAATTTCAGTTGAAAATCA+TGG 0.462156 1.2:-52869657 MS.gene038084:CDS
ATGATTCAACTGGACCTGAT+TGG 0.462834 1.2:-52869083 MS.gene038084:CDS
AATGCTATTACAACGGTTCA+CGG 0.473963 1.2:+52869392 None:intergenic
CGGCCTTCAGTTCGAATGAC+CGG 0.476526 1.2:-52869291 MS.gene038084:CDS
ATGGAACTTCTTGTTGAGAC+GGG 0.483246 1.2:-52869255 MS.gene038084:CDS
GACCGGGATGGGAGCATCGA+TGG 0.487077 1.2:-52869274 MS.gene038084:CDS
ATATCATGCAAGGGCTTCAA+TGG 0.488838 1.2:-52869353 MS.gene038084:CDS
ATGGCATGTTAAGGCTTGGT+TGG 0.496635 1.2:-52868672 MS.gene038084:CDS
TCACGGCTTCGAGAATTGCT+TGG 0.498738 1.2:+52869409 None:intergenic
TCACATACTCGCGACTCGAA+TGG 0.516098 1.2:-52869319 MS.gene038084:CDS
TCCAATGAGTGCTAATTCAA+TGG 0.516236 1.2:-52868758 MS.gene038084:CDS
GTAGAACAAGATGTTAACAT+TGG 0.523714 1.2:-52869012 MS.gene038084:CDS
TGAACTGCAAGTGTCTCATT+AGG 0.524179 1.2:+52869126 None:intergenic
AACAATATATTAGCAATTGG+TGG 0.529310 1.2:-52868856 MS.gene038084:CDS
TCAGTTCGAATGACCGGGAT+GGG 0.530352 1.2:-52869285 MS.gene038084:CDS
GAACAAGATGTTAACATTGG+AGG 0.531900 1.2:-52869009 MS.gene038084:CDS
CATACTCGCGACTCGAATGG+AGG 0.534467 1.2:-52869316 MS.gene038084:CDS
ATCCCGGTCATTCGAACTGA+AGG 0.539893 1.2:+52869288 None:intergenic
ATTGATTTGGATATCATGCA+AGG 0.540452 1.2:-52869363 MS.gene038084:CDS
AGAGTGATGAATACATCGCT+TGG 0.543301 1.2:-52869531 MS.gene038084:CDS
TTCCATCGATGCTCCCATCC+CGG 0.545444 1.2:+52869272 None:intergenic
AACATGTATTCACCAGCTCA+TGG 0.559958 1.2:-52868715 MS.gene038084:CDS
TGATATGAATGCTATTACAA+CGG 0.565293 1.2:+52869385 None:intergenic
AACAAGATGTTAACATTGGA+GGG 0.567098 1.2:-52869008 MS.gene038084:CDS
CACTTGTAGAGAAGAATGAA+TGG 0.567099 1.2:+52869479 None:intergenic
AAATGTGAAAATTTGATGAA+AGG 0.571299 1.2:+52869441 None:intergenic
GATGGAACTTCTTGTTGAGA+CGG 0.571703 1.2:-52869256 MS.gene038084:CDS
ATTAGGCCTAATTTGTAACA+TGG 0.571929 1.2:+52869143 None:intergenic
AATGCAATGAACCAACAAAA+CGG 0.577957 1.2:+52868974 None:intergenic
GGCCTTCAGTTCGAATGACC+GGG 0.584830 1.2:-52869290 MS.gene038084:CDS
AACAGGAACATTGTTGAACA+TGG 0.588599 1.2:-52868898 MS.gene038084:CDS
TTCAGTTGAAAATCATGGTG+AGG 0.588959 1.2:-52869652 MS.gene038084:CDS
ATGTGAAAATTTGATGAAAG+GGG 0.589901 1.2:+52869443 None:intergenic
TTGATTTGGATATCATGCAA+GGG 0.592147 1.2:-52869362 MS.gene038084:CDS
TTCAGTTCGAATGACCGGGA+TGG 0.594862 1.2:-52869286 MS.gene038084:CDS
GTTGATGGCATGTTAAGGCT+TGG 0.599004 1.2:-52868676 MS.gene038084:CDS
ATGGTTCTATGATCAATCAA+AGG 0.621623 1.2:+52869498 None:intergenic
ATACTCGCGACTCGAATGGA+GGG 0.625698 1.2:-52869315 MS.gene038084:CDS
GCAAGACTATAACCATGAGC+TGG 0.626630 1.2:+52868703 None:intergenic
ATTGGTGGACCTAAGAGAAG+TGG 0.635188 1.2:-52868841 MS.gene038084:CDS
CCTTCTAATGGAATGTGCAG+TGG 0.643323 1.2:-52869679 None:intergenic
TGGAACTTCTTGTTGAGACG+GGG 0.658302 1.2:-52869254 MS.gene038084:CDS
TCGCGACTCGAATGGAGGGT+CGG 0.673281 1.2:-52869311 MS.gene038084:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATGTGAAAATTTGATGAA+AGG + chr1.2:52868852-52868871 None:intergenic 20.0%
!! AATGTGAAAATTTGATGAAA+GGG + chr1.2:52868851-52868870 None:intergenic 20.0%
!! ATCAACAATATATTAGCAAT+TGG - chr1.2:52869431-52869450 MS.gene038084:CDS 20.0%
! AACAATATATTAGCAATTGG+TGG - chr1.2:52869434-52869453 MS.gene038084:CDS 25.0%
! ATGTGAAAATTTGATGAAAG+GGG + chr1.2:52868850-52868869 None:intergenic 25.0%
! ATGTTTCCATGTTACAAATT+AGG - chr1.2:52869141-52869160 MS.gene038084:CDS 25.0%
! TGATATGAATGCTATTACAA+CGG + chr1.2:52868908-52868927 None:intergenic 25.0%
!! TAGCATTCATATCATTGATT+TGG - chr1.2:52868914-52868933 MS.gene038084:CDS 25.0%
!! TCTACCAAAGTTATGATTTT+TGG + chr1.2:52869263-52869282 None:intergenic 25.0%
AACAAGATGTTAACATTGGA+GGG - chr1.2:52869282-52869301 MS.gene038084:CDS 30.0%
AATGCAATGAACCAACAAAA+CGG + chr1.2:52869319-52869338 None:intergenic 30.0%
ATGATCCAAGTGAATCAAAA+AGG + chr1.2:52869352-52869371 None:intergenic 30.0%
CACCAAATTTACATGCTATA+GGG + chr1.2:52869112-52869131 None:intergenic 30.0%
CATTCTTTGTATGATTCAAC+TGG - chr1.2:52869197-52869216 MS.gene038084:CDS 30.0%
GCAATTTCAGTTGAAAATCA+TGG - chr1.2:52868633-52868652 MS.gene038084:CDS 30.0%
GGAACCAAAAATCATAACTT+TGG - chr1.2:52869256-52869275 MS.gene038084:CDS 30.0%
GTAGAACAAGATGTTAACAT+TGG - chr1.2:52869278-52869297 MS.gene038084:CDS 30.0%
TACCCTATAGCATGTAAATT+TGG - chr1.2:52869107-52869126 MS.gene038084:CDS 30.0%
TCACCAAATTTACATGCTAT+AGG + chr1.2:52869113-52869132 None:intergenic 30.0%
TGATCCAAGTGAATCAAAAA+GGG + chr1.2:52869351-52869370 None:intergenic 30.0%
! ATCTTTCGAATTTTGCAAGA+AGG - chr1.2:52869063-52869082 MS.gene038084:CDS 30.0%
! ATGGTTCTATGATCAATCAA+AGG + chr1.2:52868795-52868814 None:intergenic 30.0%
! ATTAGGCCTAATTTGTAACA+TGG + chr1.2:52869150-52869169 None:intergenic 30.0%
! TTTGAGACTTCTTGAAGAAT+TGG - chr1.2:52869235-52869254 MS.gene038084:CDS 30.0%
!! ATTGATTTGGATATCATGCA+AGG - chr1.2:52868927-52868946 MS.gene038084:CDS 30.0%
!! TTGATTTGGATATCATGCAA+GGG - chr1.2:52868928-52868947 MS.gene038084:CDS 30.0%
AACAGGAACATTGTTGAACA+TGG - chr1.2:52869392-52869411 MS.gene038084:CDS 35.0%
AATGCTATTACAACGGTTCA+CGG + chr1.2:52868901-52868920 None:intergenic 35.0%
CACTTGTAGAGAAGAATGAA+TGG + chr1.2:52868814-52868833 None:intergenic 35.0%
GAACAAGATGTTAACATTGG+AGG - chr1.2:52869281-52869300 MS.gene038084:CDS 35.0%
GAAGTGGTGAAGAAAAGTTT+AGG - chr1.2:52869465-52869484 MS.gene038084:CDS 35.0%
GTGAAGAAAAGTTTAGGCTT+TGG - chr1.2:52869471-52869490 MS.gene038084:CDS 35.0%
GTTTGTATACTGCTTCTTGT+TGG - chr1.2:52869651-52869670 MS.gene038084:CDS 35.0%
TCCAATGAGTGCTAATTCAA+TGG - chr1.2:52869532-52869551 MS.gene038084:CDS 35.0%
TGCATAGTGATGATTCTAAC+AGG - chr1.2:52869375-52869394 MS.gene038084:CDS 35.0%
TTCAGTTGAAAATCATGGTG+AGG - chr1.2:52868638-52868657 MS.gene038084:CDS 35.0%
! AGTCTCAAAGTTTTCCAATC+AGG + chr1.2:52869224-52869243 None:intergenic 35.0%
! TTTTCTTCACCACTTCTCTT+AGG + chr1.2:52869461-52869480 None:intergenic 35.0%
!! TAACATTGGAGGGTCATTTT+TGG - chr1.2:52869292-52869311 MS.gene038084:CDS 35.0%
!! TATAGTCTTGCTCAAGTTGA+TGG - chr1.2:52869599-52869618 MS.gene038084:CDS 35.0%
!! TCAGCACATGAAGTTTTGTA+AGG + chr1.2:52868702-52868721 None:intergenic 35.0%
!! TCATTTTTGGACCGTTTTGT+TGG - chr1.2:52869305-52869324 MS.gene038084:CDS 35.0%
!!! TGCAAGAAATAGTTTTGAGC+AGG - chr1.2:52869508-52869527 MS.gene038084:CDS 35.0%
AACATGTATTCACCAGCTCA+TGG - chr1.2:52869575-52869594 MS.gene038084:CDS 40.0%
AGAGTGATGAATACATCGCT+TGG - chr1.2:52868759-52868778 MS.gene038084:CDS 40.0%
ATATCATGCAAGGGCTTCAA+TGG - chr1.2:52868937-52868956 MS.gene038084:CDS 40.0%
ATGAGACACTTGCAGTTCAT+TGG - chr1.2:52869168-52869187 MS.gene038084:CDS 40.0%
ATGATTCAACTGGACCTGAT+TGG - chr1.2:52869207-52869226 MS.gene038084:CDS 40.0%
ATGGAACTTCTTGTTGAGAC+GGG - chr1.2:52869035-52869054 MS.gene038084:CDS 40.0%
GATGGAACTTCTTGTTGAGA+CGG - chr1.2:52869034-52869053 MS.gene038084:CDS 40.0%
GCCATTGAATTAGCACTCAT+TGG + chr1.2:52869536-52869555 None:intergenic 40.0%
GCGAGTATGTGAAAAAAAGC+AGG + chr1.2:52868963-52868982 None:intergenic 40.0%
GTTGGACTTGTAGAACTTCT+AGG - chr1.2:52869669-52869688 MS.gene038084:CDS 40.0%
TCCAAGTGAATCAAAAAGGG+TGG + chr1.2:52869348-52869367 None:intergenic 40.0%
TGAACTGCAAGTGTCTCATT+AGG + chr1.2:52869167-52869186 None:intergenic 40.0%
! TCGAATTTTGCAAGAAGGCT+CGG - chr1.2:52869068-52869087 MS.gene038084:CDS 40.0%
!! CTCAAGTTGATGGCATGTTA+AGG - chr1.2:52869609-52869628 MS.gene038084:CDS 40.0%
!! TCCACCCTTTTTGATTCACT+TGG - chr1.2:52869344-52869363 MS.gene038084:CDS 40.0%
GCAAGACTATAACCATGAGC+TGG + chr1.2:52869590-52869609 None:intergenic 45.0%
TGGAACTTCTTGTTGAGACG+GGG - chr1.2:52869036-52869055 MS.gene038084:CDS 45.0%
! ATGGCATGTTAAGGCTTGGT+TGG - chr1.2:52869618-52869637 MS.gene038084:CDS 45.0%
! ATTGGTGGACCTAAGAGAAG+TGG - chr1.2:52869449-52869468 MS.gene038084:CDS 45.0%
!! GTTGATGGCATGTTAAGGCT+TGG - chr1.2:52869614-52869633 MS.gene038084:CDS 45.0%
ATACTCGCGACTCGAATGGA+GGG - chr1.2:52868975-52868994 MS.gene038084:CDS 50.0%
ATCCCGGTCATTCGAACTGA+AGG + chr1.2:52869005-52869024 None:intergenic 50.0%
TCACATACTCGCGACTCGAA+TGG - chr1.2:52868971-52868990 MS.gene038084:CDS 50.0%
TCACGGCTTCGAGAATTGCT+TGG + chr1.2:52868884-52868903 None:intergenic 50.0%
TCAGTTCGAATGACCGGGAT+GGG - chr1.2:52869005-52869024 MS.gene038084:CDS 50.0%
TTCAGTTCGAATGACCGGGA+TGG - chr1.2:52869004-52869023 MS.gene038084:CDS 50.0%
CATACTCGCGACTCGAATGG+AGG - chr1.2:52868974-52868993 MS.gene038084:CDS 55.0%
CGGCCTTCAGTTCGAATGAC+CGG - chr1.2:52868999-52869018 MS.gene038084:CDS 55.0%
GGCCTTCAGTTCGAATGACC+GGG - chr1.2:52869000-52869019 MS.gene038084:CDS 55.0%
TTCCATCGATGCTCCCATCC+CGG + chr1.2:52869021-52869040 None:intergenic 55.0%
TCGCGACTCGAATGGAGGGT+CGG - chr1.2:52868979-52868998 MS.gene038084:CDS 60.0%
!! GACCGGGATGGGAGCATCGA+TGG - chr1.2:52869016-52869035 MS.gene038084:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 52868618 52869694 52868618 ID=MS.gene038084
chr1.2 mRNA 52868618 52869694 52868618 ID=MS.gene038084.t1;Parent=MS.gene038084
chr1.2 exon 52868618 52869694 52868618 ID=MS.gene038084.t1.exon1;Parent=MS.gene038084.t1
chr1.2 CDS 52868618 52869694 52868618 ID=cds.MS.gene038084.t1;Parent=MS.gene038084.t1
Gene Sequence

>MS.gene038084

ATGGAATGTGCAGTGGCAATTTCAGTTGAAAATCATGGTGAGGCTCATAGAATGTTACTAGAGTTAACACAATTAGCTTCACCTTACAAAACTTCATGTGCTGAACGTGTTGTTGCTTATTTTGCAAAAGCTATGATTAGTAGAGTGATGAATACATCGCTTGGAGCATGTTCTCCTTTGATTGATCATAGAACCATTCATTCTTCTCTACAAGTGTTCAACAATATTTCCCCTTTCATCAAATTTTCACATTTCACTTCAAACCAAGCAATTCTCGAAGCCGTGAACCGTTGTAATAGCATTCATATCATTGATTTGGATATCATGCAAGGGCTTCAATGGCCTGCTTTTTTTCACATACTCGCGACTCGAATGGAGGGTCGGCCTTCAGTTCGAATGACCGGGATGGGAGCATCGATGGAACTTCTTGTTGAGACGGGGAAAAATCTTTCGAATTTTGCAAGAAGGCTCGGTTTGTGTTTAGAGTTTTACCCTATAGCATGTAAATTTGGTGAAGTTGTTGATGTTTCCATGTTACAAATTAGGCCTAATGAGACACTTGCAGTTCATTGGTTGCAACATTCTTTGTATGATTCAACTGGACCTGATTGGAAAACTTTGAGACTTCTTGAAGAATTGGAACCAAAAATCATAACTTTGGTAGAACAAGATGTTAACATTGGAGGGTCATTTTTGGACCGTTTTGTTGGTTCATTGCATTACTATTCCACCCTTTTTGATTCACTTGGATCATATTTGCATAGTGATGATTCTAACAGGAACATTGTTGAACATGGTCTTCTATCTAAAGAGATCAACAATATATTAGCAATTGGTGGACCTAAGAGAAGTGGTGAAGAAAAGTTTAGGCTTTGGAGAAGTGAACTTGCTGCAAGAAATAGTTTTGAGCAGGTTCCAATGAGTGCTAATTCAATGGCTCAAGCACAGTTGATATTGAACATGTATTCACCAGCTCATGGTTATAGTCTTGCTCAAGTTGATGGCATGTTAAGGCTTGGTTGGAAAGATACTAGTTTGTATACTGCTTCTTGTTGGACTTGTAGAACTTCTAGGTAG
Protein sequence

>MS.gene038084.t1

MECAVAISVENHGEAHRMLLELTQLASPYKTSCAERVVAYFAKAMISRVMNTSLGACSPLIDHRTIHSSLQVFNNISPFIKFSHFTSNQAILEAVNRCNSIHIIDLDIMQGLQWPAFFHILATRMEGRPSVRMTGMGASMELLVETGKNLSNFARRLGLCLEFYPIACKFGEVVDVSMLQIRPNETLAVHWLQHSLYDSTGPDWKTLRLLEELEPKIITLVEQDVNIGGSFLDRFVGSLHYYSTLFDSLGSYLHSDDSNRNIVEHGLLSKEINNILAIGGPKRSGEEKFRLWRSELAARNSFEQVPMSANSMAQAQLILNMYSPAHGYSLAQVDGMLRLGWKDTSLYTASCWTCRTSR