Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038141.t1 | AET00229.2 | 83.4 | 368 | 54 | 3 | 15 | 381 | 56 | 417 | 1.70E-77 | 300.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038141.t1 | Q94CK9 | 72.7 | 66 | 18 | 0 | 316 | 381 | 220 | 285 | 4.6e-23 | 110.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038141.t1 | G7K357 | 83.4 | 368 | 54 | 3 | 15 | 381 | 56 | 417 | 1.2e-77 | 300.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene038141.t1 | TF | SRS |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038141.t1 | MTR_5g089750 | 91.029 | 379 | 27 | 4 | 3 | 380 | 44 | 416 | 0.0 | 590 |
MS.gene038141.t1 | MTR_3g014660 | 42.025 | 326 | 147 | 9 | 98 | 416 | 39 | 329 | 3.91e-68 | 220 |
MS.gene038141.t1 | MTR_8g039110 | 38.272 | 324 | 159 | 10 | 83 | 389 | 8 | 307 | 1.62e-61 | 202 |
MS.gene038141.t1 | MTR_8g076620 | 45.213 | 188 | 71 | 5 | 183 | 367 | 94 | 252 | 1.13e-42 | 153 |
MS.gene038141.t1 | MTR_5g021130 | 51.829 | 164 | 70 | 4 | 206 | 365 | 93 | 251 | 2.77e-40 | 146 |
MS.gene038141.t1 | MTR_3g112510 | 41.081 | 185 | 91 | 4 | 203 | 385 | 76 | 244 | 5.57e-34 | 129 |
MS.gene038141.t1 | MTR_4g071110 | 39.216 | 153 | 61 | 3 | 213 | 365 | 17 | 137 | 2.45e-27 | 110 |
MS.gene038141.t1 | MTR_0363s0040 | 33.649 | 211 | 110 | 7 | 83 | 287 | 8 | 194 | 1.06e-26 | 107 |
MS.gene038141.t1 | MTR_1g023230 | 86.667 | 45 | 6 | 0 | 213 | 257 | 122 | 166 | 2.95e-20 | 90.1 |
MS.gene038141.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 215 | 247 | 44 | 76 | 5.84e-11 | 58.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene038141.t1 | AT5G12330 | 48.252 | 429 | 148 | 19 | 15 | 411 | 9 | 395 | 4.99e-95 | 291 |
MS.gene038141.t1 | AT5G12330 | 48.378 | 339 | 123 | 12 | 86 | 411 | 9 | 308 | 1.70e-79 | 249 |
MS.gene038141.t1 | AT5G12330 | 48.378 | 339 | 123 | 12 | 86 | 411 | 9 | 308 | 1.70e-79 | 249 |
MS.gene038141.t1 | AT5G66350 | 50.000 | 158 | 65 | 3 | 213 | 369 | 120 | 264 | 7.32e-44 | 156 |
MS.gene038141.t1 | AT5G66350 | 50.000 | 158 | 65 | 3 | 213 | 369 | 120 | 264 | 1.15e-43 | 155 |
MS.gene038141.t1 | AT5G66350 | 50.000 | 158 | 65 | 3 | 213 | 369 | 120 | 264 | 1.31e-43 | 155 |
MS.gene038141.t1 | AT1G75520 | 41.176 | 238 | 93 | 10 | 194 | 407 | 110 | 324 | 8.48e-43 | 154 |
MS.gene038141.t1 | AT1G19790 | 47.619 | 168 | 82 | 3 | 200 | 365 | 106 | 269 | 3.35e-41 | 149 |
MS.gene038141.t1 | AT1G19790 | 47.619 | 168 | 82 | 3 | 200 | 365 | 106 | 269 | 3.35e-41 | 149 |
MS.gene038141.t1 | AT3G51060 | 40.517 | 232 | 99 | 7 | 146 | 363 | 76 | 282 | 5.11e-41 | 150 |
MS.gene038141.t1 | AT4G36260 | 42.797 | 236 | 104 | 7 | 137 | 367 | 37 | 246 | 5.34e-41 | 148 |
MS.gene038141.t1 | AT2G18120 | 42.541 | 181 | 82 | 2 | 191 | 371 | 50 | 208 | 1.41e-38 | 139 |
MS.gene038141.t1 | AT2G18120 | 42.541 | 181 | 84 | 2 | 191 | 371 | 50 | 210 | 3.04e-38 | 138 |
MS.gene038141.t1 | AT3G54430 | 42.353 | 170 | 73 | 3 | 209 | 377 | 37 | 182 | 5.61e-37 | 134 |
MS.gene038141.t1 | AT2G21400 | 40.881 | 159 | 71 | 2 | 213 | 371 | 10 | 145 | 2.93e-34 | 126 |
MS.gene038141.t1 | AT2G21400 | 40.881 | 159 | 71 | 2 | 213 | 371 | 9 | 144 | 3.03e-34 | 126 |
MS.gene038141.t1 | AT2G21400 | 40.000 | 160 | 56 | 2 | 213 | 371 | 10 | 130 | 3.95e-33 | 123 |
MS.gene038141.t1 | AT2G21400 | 40.000 | 160 | 56 | 2 | 213 | 371 | 9 | 129 | 4.00e-33 | 123 |
MS.gene038141.t1 | AT5G12330 | 45.228 | 241 | 82 | 9 | 86 | 311 | 9 | 214 | 3.93e-32 | 122 |
MS.gene038141.t1 | AT5G33210 | 72.222 | 54 | 15 | 0 | 211 | 264 | 15 | 68 | 4.69e-21 | 88.2 |
MS.gene038141.t1 | AT5G33210 | 72.222 | 54 | 15 | 0 | 211 | 264 | 50 | 103 | 1.24e-20 | 89.0 |
Find 126 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAATACAAGTCCAACAAATT+TGG | 0.195666 | 5.1:-71086261 | MS.gene038141:CDS |
CATGGTACTGGTGGGTTAAC+TGG | 0.215140 | 5.1:-71086236 | MS.gene038141:CDS |
TCATCTAGGTCCATTAATTA+TGG | 0.227585 | 5.1:-71086596 | MS.gene038141:CDS |
AACCTTTCTGAACTTCATTT+AGG | 0.241697 | 5.1:-71085110 | MS.gene038141:CDS |
AGGAGATTGCCTTCAGATTC+AGG | 0.251476 | 5.1:-71086761 | MS.gene038141:CDS |
GGTGGAAGCTCCGGCGTTTC+CGG | 0.252237 | 5.1:+71086643 | None:intergenic |
GGTTCTAGTGGTTCAACTTC+TGG | 0.271027 | 5.1:-71086005 | MS.gene038141:CDS |
CCGCCACCGCTCTCGGTGTC+GGG | 0.292941 | 5.1:-71086466 | MS.gene038141:CDS |
TTACTTGGAGGTTCAGCTTA+TGG | 0.298507 | 5.1:-71084969 | MS.gene038141:CDS |
ACCAACAAGGAATTCAGTTT+TGG | 0.307252 | 5.1:-71086379 | MS.gene038141:CDS |
TGATCATGGTGTTGAGAATA+GGG | 0.324275 | 5.1:-71085144 | MS.gene038141:CDS |
CATCTCAGGTCCATAATTAA+TGG | 0.328906 | 5.1:+71086586 | None:intergenic |
AAACCGAGTGAAAGATCTTC+TGG | 0.334650 | 5.1:+71086683 | None:intergenic |
AGCTCCGGCGTTTCCGGCGG+TGG | 0.340870 | 5.1:+71086649 | None:intergenic |
ACTGGTGGGTTAACTGGTTC+TGG | 0.346294 | 5.1:-71086230 | MS.gene038141:CDS |
GCCAAAACTGAATTCCTTGT+TGG | 0.364262 | 5.1:+71086378 | None:intergenic |
AGTGGTGGTGGAGGGTTACT+TGG | 0.368806 | 5.1:-71084984 | MS.gene038141:CDS |
ATGATCATGGTGTTGAGAAT+AGG | 0.379627 | 5.1:-71085145 | MS.gene038141:CDS |
CTACTCATGTTAAGAGTACT+TGG | 0.387799 | 5.1:-71086094 | MS.gene038141:CDS |
AGTCCAACAAATTTGGTTCA+TGG | 0.393800 | 5.1:-71086254 | MS.gene038141:CDS |
TGAGAATTAACAAACCTTGA+TGG | 0.401434 | 5.1:+71085889 | None:intergenic |
GCGACAACGACGGTGGTTGC+TGG | 0.403885 | 5.1:-71086032 | MS.gene038141:CDS |
CCCGACACCGAGAGCGGTGG+CGG | 0.404701 | 5.1:+71086466 | None:intergenic |
AGAAGGATTGTAGTAATAGA+AGG | 0.407133 | 5.1:-71086154 | MS.gene038141:CDS |
GAGGTAGTATCAAAGCTTCT+AGG | 0.414831 | 5.1:+71085915 | None:intergenic |
CTTAACCCCGCCACCGCTCT+CGG | 0.417771 | 5.1:-71086473 | MS.gene038141:CDS |
GTACCATGAACCAAATTTGT+TGG | 0.418091 | 5.1:+71086251 | None:intergenic |
CCCGCCACCGCTCTCGGTGT+CGG | 0.421375 | 5.1:-71086467 | MS.gene038141:CDS |
CTTTCACTCGGTTTCAATGC+GGG | 0.422098 | 5.1:-71086674 | MS.gene038141:CDS |
TACTACAATCCTTCTTCGCT+TGG | 0.423666 | 5.1:+71086162 | None:intergenic |
ACAAATTTGGTTCATGGTAC+TGG | 0.423871 | 5.1:-71086248 | MS.gene038141:CDS |
CATTTAGGTGGTGGTGGTGG+TGG | 0.424372 | 5.1:-71085095 | MS.gene038141:CDS |
GGTGGTGGTGGTAATAATAA+TGG | 0.432992 | 5.1:-71085083 | MS.gene038141:CDS |
GGTGGGTCCGGTGGAAGCTC+CGG | 0.434590 | 5.1:+71086634 | None:intergenic |
TTCAATGCGGGTCCCACCGC+CGG | 0.436323 | 5.1:-71086662 | MS.gene038141:CDS |
GCAGCTTCAAGTGGTGGTGG+AGG | 0.442810 | 5.1:-71084993 | MS.gene038141:CDS |
AATGGCGGTGCTAATAGAAA+TGG | 0.444064 | 5.1:-71085065 | MS.gene038141:CDS |
GATTGTTATGGTGGTGGTGG+TGG | 0.451027 | 5.1:+71086528 | None:intergenic |
ATATAATCCGGTGGTGGGTC+CGG | 0.460177 | 5.1:+71086622 | None:intergenic |
TGTTGTTCCTCCACCACTAC+TGG | 0.460746 | 5.1:+71086205 | None:intergenic |
TCTGAACTTCATTTAGGTGG+TGG | 0.463166 | 5.1:-71085104 | MS.gene038141:CDS |
CTTCATTTAGGTGGTGGTGG+TGG | 0.465476 | 5.1:-71085098 | MS.gene038141:CDS |
CATTAATTATGGACCTGAGA+TGG | 0.472294 | 5.1:-71086585 | MS.gene038141:CDS |
AAGATGATGAGAGAAGAAAA+TGG | 0.473083 | 5.1:-71087273 | MS.gene038141:intron |
GGTGGTGGAGGGTTACTTGG+AGG | 0.474597 | 5.1:-71084981 | MS.gene038141:CDS |
GATACTACCTCTAGCCATCA+AGG | 0.481688 | 5.1:-71085903 | MS.gene038141:intron |
CCGGATTATATAATTCATCT+AGG | 0.484439 | 5.1:-71086610 | MS.gene038141:CDS |
GTTTGTGAAGCAATAAGTCT+AGG | 0.489243 | 5.1:+71085972 | None:intergenic |
GTCTTCTTCATCACCAATGA+TGG | 0.489923 | 5.1:-71085039 | MS.gene038141:CDS |
GGTTTCAAAGATTCTATGCC+GGG | 0.497066 | 5.1:-71085290 | MS.gene038141:CDS |
TTGTGGAAACCAAGCGAAGA+AGG | 0.497994 | 5.1:-71086171 | MS.gene038141:CDS |
GGGTACCGGCTGCTAGAAGA+AGG | 0.498642 | 5.1:-71086073 | MS.gene038141:CDS |
CAAGTACTCTTAACATGAGT+AGG | 0.499272 | 5.1:+71086095 | None:intergenic |
TCATGAGAAGGATCCATCAT+TGG | 0.499688 | 5.1:+71085026 | None:intergenic |
GAGCTGCTTCATGATTGTTA+TGG | 0.501220 | 5.1:+71086516 | None:intergenic |
AAATGAAGTTCAGAAAGGTT+AGG | 0.504881 | 5.1:+71085113 | None:intergenic |
GTTGCTGGTGGTGGTTCTAG+TGG | 0.506006 | 5.1:-71086017 | MS.gene038141:CDS |
GAACTTCATTTAGGTGGTGG+TGG | 0.506112 | 5.1:-71085101 | MS.gene038141:CDS |
CTTCATGATTGTTATGGTGG+TGG | 0.507878 | 5.1:+71086522 | None:intergenic |
CCGACACCGAGAGCGGTGGC+GGG | 0.513284 | 5.1:+71086467 | None:intergenic |
CCTAGATGAATTATATAATC+CGG | 0.516389 | 5.1:+71086610 | None:intergenic |
CATGATTGTTATGGTGGTGG+TGG | 0.519577 | 5.1:+71086525 | None:intergenic |
GGTCCCACCGCCGGAAACGC+CGG | 0.524097 | 5.1:-71086653 | MS.gene038141:CDS |
GCTCCGGCGTTTCCGGCGGT+GGG | 0.525360 | 5.1:+71086650 | None:intergenic |
ACGACGGTGGTTGCTGGTGG+TGG | 0.527037 | 5.1:-71086026 | MS.gene038141:CDS |
TGAATTATATAATCCGGTGG+TGG | 0.528238 | 5.1:+71086616 | None:intergenic |
TTCTGGAGCAGCAGCACGAA+GGG | 0.528350 | 5.1:+71086700 | None:intergenic |
ATTAATTATGGACCTGAGAT+GGG | 0.532955 | 5.1:-71086584 | MS.gene038141:CDS |
CTTTCTGAACTTCATTTAGG+TGG | 0.534449 | 5.1:-71085107 | MS.gene038141:CDS |
CATGGAGAAGCTGTGAGTAA+AGG | 0.534475 | 5.1:+71086437 | None:intergenic |
CGTTCCCTTCTTCTAGCAGC+CGG | 0.537437 | 5.1:+71086068 | None:intergenic |
GCAGCAGCTTCAAGTGGTGG+TGG | 0.540984 | 5.1:-71084996 | MS.gene038141:CDS |
ACTGGTTCTGGTACCAGTAG+TGG | 0.546183 | 5.1:-71086218 | MS.gene038141:CDS |
GCTTCCACCGGACCCACCAC+CGG | 0.548718 | 5.1:-71086629 | MS.gene038141:CDS |
AGAACTTGTTGTAAAAGTAG+AGG | 0.550532 | 5.1:-71086128 | MS.gene038141:CDS |
AGGTTTCAAAGATTCTATGC+CGG | 0.555014 | 5.1:-71085291 | MS.gene038141:CDS |
AATTTGGTTCATGGTACTGG+TGG | 0.555469 | 5.1:-71086245 | MS.gene038141:CDS |
ACAACAAACATACCCATCTC+AGG | 0.556410 | 5.1:+71086572 | None:intergenic |
ACAACAACGTGTCAAGATTG+TGG | 0.558898 | 5.1:-71086188 | MS.gene038141:CDS |
TGTTAAGAGTACTTGGGTAC+CGG | 0.559268 | 5.1:-71086087 | MS.gene038141:CDS |
CACCTAAATGAAGTTCAGAA+AGG | 0.561618 | 5.1:+71085108 | None:intergenic |
CTGCTTCATGATTGTTATGG+TGG | 0.564872 | 5.1:+71086519 | None:intergenic |
GCTCCAGAAGATCTTTCACT+CGG | 0.567750 | 5.1:-71086686 | MS.gene038141:CDS |
GAATTATATAATCCGGTGGT+GGG | 0.570532 | 5.1:+71086617 | None:intergenic |
CGCCACCGCTCTCGGTGTCG+GGG | 0.570886 | 5.1:-71086465 | MS.gene038141:CDS |
AGCAACCACCGTCGTTGTCG+CGG | 0.571590 | 5.1:+71086034 | None:intergenic |
TATCAAGCTGTAGTGAAGAT+TGG | 0.579339 | 5.1:-71085194 | MS.gene038141:CDS |
ATATAGTTGTGGCTACTACA+AGG | 0.581940 | 5.1:-71086781 | MS.gene038141:intron |
TTCTTCGACCGCGACAACGA+CGG | 0.583043 | 5.1:-71086042 | MS.gene038141:CDS |
GGAAACGCCGGAGCTTCCAC+CGG | 0.586967 | 5.1:-71086641 | MS.gene038141:CDS |
TAATCCGGTGGTGGGTCCGG+TGG | 0.587770 | 5.1:+71086625 | None:intergenic |
GCCGGGTCAAGTACGTGCAC+CGG | 0.588438 | 5.1:-71085273 | MS.gene038141:CDS |
AAAGAAAACCTTTGAAAACA+TGG | 0.590040 | 5.1:+71085168 | None:intergenic |
CTAACACACTTGAATAGAGC+CGG | 0.591611 | 5.1:+71085254 | None:intergenic |
TCTGGTACCAGTAGTGGTGG+AGG | 0.592565 | 5.1:-71086212 | MS.gene038141:CDS |
CGACACCGAGAGCGGTGGCG+GGG | 0.592680 | 5.1:+71086468 | None:intergenic |
ATTTGGTTCATGGTACTGGT+GGG | 0.594801 | 5.1:-71086244 | MS.gene038141:CDS |
GGAAGCTCCGGCGTTTCCGG+CGG | 0.598478 | 5.1:+71086646 | None:intergenic |
AGTATCAAAGCTTCTAGGAG+GGG | 0.599007 | 5.1:+71085920 | None:intergenic |
AAGTACTCTTAACATGAGTA+GGG | 0.604249 | 5.1:+71086096 | None:intergenic |
CAAGCTGTAGTGAAGATTGG+TGG | 0.605202 | 5.1:-71085191 | MS.gene038141:CDS |
CAGCTTCAAGTGGTGGTGGA+GGG | 0.610373 | 5.1:-71084992 | MS.gene038141:CDS |
GCCGGTGCACGTACTTGACC+CGG | 0.610717 | 5.1:+71085272 | None:intergenic |
TATGCAGCAGCTTCAAGTGG+TGG | 0.610824 | 5.1:-71084999 | MS.gene038141:CDS |
GTAGTATCAAAGCTTCTAGG+AGG | 0.611169 | 5.1:+71085918 | None:intergenic |
GCAAAAGCTCCTGAATCTGA+AGG | 0.612169 | 5.1:+71086752 | None:intergenic |
TAGTATCAAAGCTTCTAGGA+GGG | 0.613507 | 5.1:+71085919 | None:intergenic |
GGTTCTGGTACCAGTAGTGG+TGG | 0.613955 | 5.1:-71086215 | MS.gene038141:CDS |
AGAGTGACATCAGTGGATGA+TGG | 0.614276 | 5.1:-71085233 | MS.gene038141:CDS |
TAACAAACCTTGATGGCTAG+AGG | 0.619709 | 5.1:+71085896 | None:intergenic |
TTCGACCGCGACAACGACGG+TGG | 0.620852 | 5.1:-71086039 | MS.gene038141:CDS |
CTTCTGGAGCAGCAGCACGA+AGG | 0.625376 | 5.1:+71086699 | None:intergenic |
TGGTGGTGATGAAAAGAAGA+TGG | 0.632371 | 5.1:+71086545 | None:intergenic |
TACTCATGTTAAGAGTACTT+GGG | 0.637418 | 5.1:-71086093 | MS.gene038141:CDS |
GCTGCATAAACATCATGAGA+AGG | 0.637740 | 5.1:+71085014 | None:intergenic |
GGTACCGGCTGCTAGAAGAA+GGG | 0.655941 | 5.1:-71086072 | MS.gene038141:CDS |
AACCCCGACACCGAGAGCGG+TGG | 0.656167 | 5.1:+71086463 | None:intergenic |
GTGGCGGGGTTAAGAGAGTG+AGG | 0.668996 | 5.1:+71086482 | None:intergenic |
ACAACGACGGTGGTTGCTGG+TGG | 0.669044 | 5.1:-71086029 | MS.gene038141:CDS |
TCTTTCACTCGGTTTCAATG+CGG | 0.669874 | 5.1:-71086675 | MS.gene038141:CDS |
GTTTATGCAGCAGCTTCAAG+TGG | 0.670690 | 5.1:-71085002 | MS.gene038141:CDS |
AGATGAATTATATAATCCGG+TGG | 0.675126 | 5.1:+71086613 | None:intergenic |
TATAACCCCGACACCGAGAG+CGG | 0.681070 | 5.1:+71086460 | None:intergenic |
GGTGGTGGTAATAATAATGG+CGG | 0.700948 | 5.1:-71085080 | MS.gene038141:CDS |
GTGTGTTAGAGTGACATCAG+TGG | 0.704487 | 5.1:-71085240 | MS.gene038141:CDS |
AACAATAGAAGAAACCAACA+AGG | 0.735803 | 5.1:-71086392 | MS.gene038141:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTAGTTAGTTTAATTTTTT+GGG | - | chr5.1:71086867-71086886 | MS.gene038141:intron | 10.0% |
!! | AACCTAAAATTATATTATGA+AGG | + | chr5.1:71086397-71086416 | None:intergenic | 15.0% |
!! | TAAAAATTAGTTAAACTAGA+TGG | + | chr5.1:71086655-71086674 | None:intergenic | 15.0% |
!! | TAGAAAAATAGAAATAGAAA+AGG | - | chr5.1:71085007-71085026 | MS.gene038141:CDS | 15.0% |
!!! | CTTTAGTTAGTTTAATTTTT+TGG | - | chr5.1:71086866-71086885 | MS.gene038141:intron | 15.0% |
!!! | TTCCTTCATAATATAATTTT+AGG | - | chr5.1:71086392-71086411 | MS.gene038141:CDS | 15.0% |
!! | AAATAAAAATAGTGCAAGTT+TGG | - | chr5.1:71086434-71086453 | MS.gene038141:CDS | 20.0% |
!! | ATATATGTATGTATGTAATG+TGG | + | chr5.1:71085384-71085403 | None:intergenic | 20.0% |
!! | TATATGTATGTATGTAATGT+GGG | + | chr5.1:71085383-71085402 | None:intergenic | 20.0% |
!!! | ACTATATGTTTTTTGATGTA+TGG | + | chr5.1:71085450-71085469 | None:intergenic | 20.0% |
!!! | TTTTGTTGATAAAATCACAA+TGG | - | chr5.1:71086507-71086526 | MS.gene038141:CDS | 20.0% |
! | ATATGTATGTATGTAATGTG+GGG | + | chr5.1:71085382-71085401 | None:intergenic | 25.0% |
! | CACTATTTGAAAAAACAACA+AGG | - | chr5.1:71085945-71085964 | MS.gene038141:CDS | 25.0% |
! | CATCAAAAAACATATAGTTG+TGG | - | chr5.1:71085452-71085471 | MS.gene038141:intron | 25.0% |
! | CCTAGATGAATTATATAATC+CGG | + | chr5.1:71085637-71085656 | None:intergenic | 25.0% |
! | TAATACAAGTCCAACAAATT+TGG | - | chr5.1:71085983-71086002 | MS.gene038141:CDS | 25.0% |
!! | AAAGAAAACCTTTGAAAACA+TGG | + | chr5.1:71087079-71087098 | None:intergenic | 25.0% |
!! | AAAGGTTTTCTTTATGATCA+TGG | - | chr5.1:71087086-71087105 | MS.gene038141:intron | 25.0% |
!!! | ATGTTTTCATTTTCAAGACA+TGG | + | chr5.1:71085828-71085847 | None:intergenic | 25.0% |
!!! | ATTGTTTCTGTTTATAAGTG+TGG | + | chr5.1:71085303-71085322 | None:intergenic | 25.0% |
!!! | TTTTTCAAATAGTGTGAATG+TGG | + | chr5.1:71085939-71085958 | None:intergenic | 25.0% |
AAATGAAGTTCAGAAAGGTT+AGG | + | chr5.1:71087134-71087153 | None:intergenic | 30.0% | |
AACAATAGAAGAAACCAACA+AGG | - | chr5.1:71085852-71085871 | MS.gene038141:intron | 30.0% | |
AACCTTTCTGAACTTCATTT+AGG | - | chr5.1:71087134-71087153 | MS.gene038141:intron | 30.0% | |
AACTATAAACTCTGCACAAT+TGG | + | chr5.1:71086540-71086559 | None:intergenic | 30.0% | |
AAGATGATGAGAGAAGAAAA+TGG | - | chr5.1:71084971-71084990 | MS.gene038141:CDS | 30.0% | |
AAGTACTCTTAACATGAGTA+GGG | + | chr5.1:71086151-71086170 | None:intergenic | 30.0% | |
AGAAGGATTGTAGTAATAGA+AGG | - | chr5.1:71086090-71086109 | MS.gene038141:CDS | 30.0% | |
AGATGAATTATATAATCCGG+TGG | + | chr5.1:71085634-71085653 | None:intergenic | 30.0% | |
ATTAATTATGGACCTGAGAT+GGG | - | chr5.1:71085660-71085679 | MS.gene038141:intron | 30.0% | |
CCGGATTATATAATTCATCT+AGG | - | chr5.1:71085634-71085653 | MS.gene038141:intron | 30.0% | |
GTAGCTAGTGAGAAAATTAA+TGG | + | chr5.1:71086601-71086620 | None:intergenic | 30.0% | |
TACTACTACTACTGTCAATT+TGG | + | chr5.1:71085164-71085183 | None:intergenic | 30.0% | |
TCATCTAGGTCCATTAATTA+TGG | - | chr5.1:71085648-71085667 | MS.gene038141:intron | 30.0% | |
TGAGAATTAACAAACCTTGA+TGG | + | chr5.1:71086358-71086377 | None:intergenic | 30.0% | |
! | ATTTTCTCACTAGCTACATA+AGG | - | chr5.1:71086604-71086623 | MS.gene038141:CDS | 30.0% |
! | TAGATGGTTGATCTTTTCAT+TGG | + | chr5.1:71086639-71086658 | None:intergenic | 30.0% |
!! | AGAAAATTAATGGACTAGTG+TGG | + | chr5.1:71086591-71086610 | None:intergenic | 30.0% |
!! | AGAACTTGTTGTAAAAGTAG+AGG | - | chr5.1:71086116-71086135 | MS.gene038141:CDS | 30.0% |
!! | GTTGTTTTCTGATGATTTTC+TGG | + | chr5.1:71085233-71085252 | None:intergenic | 30.0% |
!! | TACTCATGTTAAGAGTACTT+GGG | - | chr5.1:71086151-71086170 | MS.gene038141:CDS | 30.0% |
!!! | TGAAGAGTTGTGTTTTGATT+TGG | - | chr5.1:71086908-71086927 | MS.gene038141:intron | 30.0% |
AGGTTTCAAAGATTCTATGC+CGG | - | chr5.1:71086953-71086972 | MS.gene038141:intron | 35.0% | |
ATATAGTTGTGGCTACTACA+AGG | - | chr5.1:71085463-71085482 | MS.gene038141:intron | 35.0% | |
CAAGTACTCTTAACATGAGT+AGG | + | chr5.1:71086152-71086171 | None:intergenic | 35.0% | |
CACCTAAATGAAGTTCAGAA+AGG | + | chr5.1:71087139-71087158 | None:intergenic | 35.0% | |
CATCTCAGGTCCATAATTAA+TGG | + | chr5.1:71085661-71085680 | None:intergenic | 35.0% | |
CATTAATTATGGACCTGAGA+TGG | - | chr5.1:71085659-71085678 | MS.gene038141:intron | 35.0% | |
CTTTCTGAACTTCATTTAGG+TGG | - | chr5.1:71087137-71087156 | MS.gene038141:intron | 35.0% | |
GAATTATATAATCCGGTGGT+GGG | + | chr5.1:71085630-71085649 | None:intergenic | 35.0% | |
GATAAAATCACAATGGCTCA+AGG | - | chr5.1:71086514-71086533 | MS.gene038141:CDS | 35.0% | |
GTACCATGAACCAAATTTGT+TGG | + | chr5.1:71085996-71086015 | None:intergenic | 35.0% | |
GTTTGTGAAGCAATAAGTCT+AGG | + | chr5.1:71086275-71086294 | None:intergenic | 35.0% | |
TATCAAGCTGTAGTGAAGAT+TGG | - | chr5.1:71087050-71087069 | MS.gene038141:intron | 35.0% | |
TGAATTATATAATCCGGTGG+TGG | + | chr5.1:71085631-71085650 | None:intergenic | 35.0% | |
TGATGAGAGAAGAAAATGGT+CGG | - | chr5.1:71084975-71084994 | MS.gene038141:CDS | 35.0% | |
TGGTGTAGATCTTAAATGGT+GGG | + | chr5.1:71085359-71085378 | None:intergenic | 35.0% | |
TTCTGTTTATAAGTGTGGAG+AGG | + | chr5.1:71085298-71085317 | None:intergenic | 35.0% | |
! | ACAAATTTGGTTCATGGTAC+TGG | - | chr5.1:71085996-71086015 | MS.gene038141:CDS | 35.0% |
! | ACCAACAAGGAATTCAGTTT+TGG | - | chr5.1:71085865-71085884 | MS.gene038141:intron | 35.0% |
! | AGTCCAACAAATTTGGTTCA+TGG | - | chr5.1:71085990-71086009 | MS.gene038141:CDS | 35.0% |
! | ATGATCATGGTGTTGAGAAT+AGG | - | chr5.1:71087099-71087118 | MS.gene038141:intron | 35.0% |
! | TAGTATCAAAGCTTCTAGGA+GGG | + | chr5.1:71086328-71086347 | None:intergenic | 35.0% |
! | TGATCATGGTGTTGAGAATA+GGG | - | chr5.1:71087100-71087119 | MS.gene038141:intron | 35.0% |
! | TTTTCGACTGGAAGAGAAAA+AGG | + | chr5.1:71085139-71085158 | None:intergenic | 35.0% |
!! | CTACTCATGTTAAGAGTACT+TGG | - | chr5.1:71086150-71086169 | MS.gene038141:CDS | 35.0% |
AAACCGAGTGAAAGATCTTC+TGG | + | chr5.1:71085564-71085583 | None:intergenic | 40.0% | |
AAGTGTGGAGAGGAAAAGAA+AGG | + | chr5.1:71085288-71085307 | None:intergenic | 40.0% | |
ACAACAAACATACCCATCTC+AGG | + | chr5.1:71085675-71085694 | None:intergenic | 40.0% | |
ACAACAACGTGTCAAGATTG+TGG | - | chr5.1:71086056-71086075 | MS.gene038141:CDS | 40.0% | |
CTAACACACTTGAATAGAGC+CGG | + | chr5.1:71086993-71087012 | None:intergenic | 40.0% | |
CTGCTTCATGATTGTTATGG+TGG | + | chr5.1:71085728-71085747 | None:intergenic | 40.0% | |
CTTCATGATTGTTATGGTGG+TGG | + | chr5.1:71085725-71085744 | None:intergenic | 40.0% | |
GACTGGAAGAGAAAAAGGTA+TGG | + | chr5.1:71085134-71085153 | None:intergenic | 40.0% | |
GAGCTGCTTCATGATTGTTA+TGG | + | chr5.1:71085731-71085750 | None:intergenic | 40.0% | |
GAGGTAGTATCAAAGCTTCT+AGG | + | chr5.1:71086332-71086351 | None:intergenic | 40.0% | |
GCCAAAACTGAATTCCTTGT+TGG | + | chr5.1:71085869-71085888 | None:intergenic | 40.0% | |
GCTGCATAAACATCATGAGA+AGG | + | chr5.1:71087233-71087252 | None:intergenic | 40.0% | |
GGTGTAGATCTTAAATGGTG+GGG | + | chr5.1:71085358-71085377 | None:intergenic | 40.0% | |
GGTTTCAAAGATTCTATGCC+GGG | - | chr5.1:71086954-71086973 | MS.gene038141:intron | 40.0% | |
GTAGTATCAAAGCTTCTAGG+AGG | + | chr5.1:71086329-71086348 | None:intergenic | 40.0% | |
GTATTAATGTGTGCAGATGC+AGG | - | chr5.1:71086933-71086952 | MS.gene038141:intron | 40.0% | |
GTCTTCTTCATCACCAATGA+TGG | - | chr5.1:71087205-71087224 | MS.gene038141:intron | 40.0% | |
GTGGTGTAGATCTTAAATGG+TGG | + | chr5.1:71085360-71085379 | None:intergenic | 40.0% | |
GTGTAGATCTTAAATGGTGG+GGG | + | chr5.1:71085357-71085376 | None:intergenic | 40.0% | |
GTGTGGCTAACTAGTATAAC+TGG | + | chr5.1:71086574-71086593 | None:intergenic | 40.0% | |
TACTACAATCCTTCTTCGCT+TGG | + | chr5.1:71086085-71086104 | None:intergenic | 40.0% | |
TCATGAGAAGGATCCATCAT+TGG | + | chr5.1:71087221-71087240 | None:intergenic | 40.0% | |
TCTGAACTTCATTTAGGTGG+TGG | - | chr5.1:71087140-71087159 | MS.gene038141:intron | 40.0% | |
TCTTTCACTCGGTTTCAATG+CGG | - | chr5.1:71085569-71085588 | MS.gene038141:intron | 40.0% | |
TGTATGTATGTAATGTGGGG+TGG | + | chr5.1:71085379-71085398 | None:intergenic | 40.0% | |
TTACTTGGAGGTTCAGCTTA+TGG | - | chr5.1:71087275-71087294 | MS.gene038141:CDS | 40.0% | |
! | AATGGCGGTGCTAATAGAAA+TGG | - | chr5.1:71087179-71087198 | MS.gene038141:intron | 40.0% |
! | AATTTGGTTCATGGTACTGG+TGG | - | chr5.1:71085999-71086018 | MS.gene038141:CDS | 40.0% |
! | AGTATCAAAGCTTCTAGGAG+GGG | + | chr5.1:71086327-71086346 | None:intergenic | 40.0% |
! | ATTCAGGAGCTTTTGCTGAT+TGG | - | chr5.1:71085499-71085518 | MS.gene038141:intron | 40.0% |
! | GGTGGTGGTAATAATAATGG+CGG | - | chr5.1:71087164-71087183 | MS.gene038141:intron | 40.0% |
! | GGTTAAGTTGTGAGAGAGAA+GGG | + | chr5.1:71085113-71085132 | None:intergenic | 40.0% |
! | TAACAAACCTTGATGGCTAG+AGG | + | chr5.1:71086351-71086370 | None:intergenic | 40.0% |
! | TGGTGGTGATGAAAAGAAGA+TGG | + | chr5.1:71085702-71085721 | None:intergenic | 40.0% |
! | TGGTTAAGTTGTGAGAGAGA+AGG | + | chr5.1:71085114-71085133 | None:intergenic | 40.0% |
!! | ATTGGTGGCCATGTTTTCAA+AGG | - | chr5.1:71087068-71087087 | MS.gene038141:intron | 40.0% |
!! | ATTTGGTTCATGGTACTGGT+GGG | - | chr5.1:71086000-71086019 | MS.gene038141:CDS | 40.0% |
!! | GGTGGTGGTGGTAATAATAA+TGG | - | chr5.1:71087161-71087180 | MS.gene038141:intron | 40.0% |
!! | TGTTAAGAGTACTTGGGTAC+CGG | - | chr5.1:71086157-71086176 | MS.gene038141:CDS | 40.0% |
!! | TTCAGGAGCTTTTGCTGATT+GGG | - | chr5.1:71085500-71085519 | MS.gene038141:intron | 40.0% |
!!! | GTCAATTTGGCTTTTTCGAC+TGG | + | chr5.1:71085151-71085170 | None:intergenic | 40.0% |
AGAGTGACATCAGTGGATGA+TGG | - | chr5.1:71087011-71087030 | MS.gene038141:intron | 45.0% | |
AGGAGATTGCCTTCAGATTC+AGG | - | chr5.1:71085483-71085502 | MS.gene038141:intron | 45.0% | |
CAACACTCTTCTGTTTGTGC+TGG | - | chr5.1:71085086-71085105 | MS.gene038141:CDS | 45.0% | |
CAAGCTGTAGTGAAGATTGG+TGG | - | chr5.1:71087053-71087072 | MS.gene038141:intron | 45.0% | |
CATGGAGAAGCTGTGAGTAA+AGG | + | chr5.1:71085810-71085829 | None:intergenic | 45.0% | |
CTTTCACTCGGTTTCAATGC+GGG | - | chr5.1:71085570-71085589 | MS.gene038141:intron | 45.0% | |
GATACTACCTCTAGCCATCA+AGG | - | chr5.1:71086341-71086360 | MS.gene038141:CDS | 45.0% | |
GCAAAAGCTCCTGAATCTGA+AGG | + | chr5.1:71085495-71085514 | None:intergenic | 45.0% | |
GCTCCAGAAGATCTTTCACT+CGG | - | chr5.1:71085558-71085577 | MS.gene038141:intron | 45.0% | |
GGGGTGGTGTAGATCTTAAA+TGG | + | chr5.1:71085363-71085382 | None:intergenic | 45.0% | |
GTGGAGAGGAAAAGAAAGGA+AGG | + | chr5.1:71085284-71085303 | None:intergenic | 45.0% | |
GTGTGTTAGAGTGACATCAG+TGG | - | chr5.1:71087004-71087023 | MS.gene038141:intron | 45.0% | |
GTTTATGCAGCAGCTTCAAG+TGG | - | chr5.1:71087242-71087261 | MS.gene038141:intron | 45.0% | |
TGCTGTTGGAGCTGTAATTG+TGG | + | chr5.1:71085188-71085207 | None:intergenic | 45.0% | |
TTGTGGAAACCAAGCGAAGA+AGG | - | chr5.1:71086073-71086092 | MS.gene038141:CDS | 45.0% | |
! | CAGCACAAACAGAAGAGTGT+TGG | + | chr5.1:71085088-71085107 | None:intergenic | 45.0% |
! | GAACTTCATTTAGGTGGTGG+TGG | - | chr5.1:71087143-71087162 | MS.gene038141:intron | 45.0% |
! | GGTTCTAGTGGTTCAACTTC+TGG | - | chr5.1:71086239-71086258 | MS.gene038141:CDS | 45.0% |
!! | CATGATTGTTATGGTGGTGG+TGG | + | chr5.1:71085722-71085741 | None:intergenic | 45.0% |
TATGCAGCAGCTTCAAGTGG+TGG | - | chr5.1:71087245-71087264 | MS.gene038141:intron | 50.0% | |
TGTTGTTCCTCCACCACTAC+TGG | + | chr5.1:71086042-71086061 | None:intergenic | 50.0% | |
!! | ACTGGTGGGTTAACTGGTTC+TGG | - | chr5.1:71086014-71086033 | MS.gene038141:CDS | 50.0% |
!! | ACTGGTTCTGGTACCAGTAG+TGG | - | chr5.1:71086026-71086045 | MS.gene038141:CDS | 50.0% |
!! | ATATAATCCGGTGGTGGGTC+CGG | + | chr5.1:71085625-71085644 | None:intergenic | 50.0% |
!! | CATGGTACTGGTGGGTTAAC+TGG | - | chr5.1:71086008-71086027 | MS.gene038141:CDS | 50.0% |
!! | CTTCATTTAGGTGGTGGTGG+TGG | - | chr5.1:71087146-71087165 | MS.gene038141:intron | 50.0% |
!! | GATTGTTATGGTGGTGGTGG+TGG | + | chr5.1:71085719-71085738 | None:intergenic | 50.0% |
CGTTCCCTTCTTCTAGCAGC+CGG | + | chr5.1:71086179-71086198 | None:intergenic | 55.0% | |
GCTTCTGCTGCTGTTGCTGT+TGG | + | chr5.1:71085202-71085221 | None:intergenic | 55.0% | |
TATAACCCCGACACCGAGAG+CGG | + | chr5.1:71085787-71085806 | None:intergenic | 55.0% | |
TCTGGTACCAGTAGTGGTGG+AGG | - | chr5.1:71086032-71086051 | MS.gene038141:CDS | 55.0% | |
TTCTTCGACCGCGACAACGA+CGG | - | chr5.1:71086202-71086221 | MS.gene038141:CDS | 55.0% | |
! | GGTTCTGGTACCAGTAGTGG+TGG | - | chr5.1:71086029-71086048 | MS.gene038141:CDS | 55.0% |
!! | AGTGGTGGTGGAGGGTTACT+TGG | - | chr5.1:71087260-71087279 | MS.gene038141:intron | 55.0% |
!! | CAGCTTCAAGTGGTGGTGGA+GGG | - | chr5.1:71087252-71087271 | MS.gene038141:intron | 55.0% |
!! | CATTTAGGTGGTGGTGGTGG+TGG | - | chr5.1:71087149-71087168 | MS.gene038141:intron | 55.0% |
!! | GGTACCGGCTGCTAGAAGAA+GGG | - | chr5.1:71086172-71086191 | MS.gene038141:CDS | 55.0% |
!! | GTTGCTGGTGGTGGTTCTAG+TGG | - | chr5.1:71086227-71086246 | MS.gene038141:CDS | 55.0% |
!! | TTCTGGAGCAGCAGCACGAA+GGG | + | chr5.1:71085547-71085566 | None:intergenic | 55.0% |
ACAACGACGGTGGTTGCTGG+TGG | - | chr5.1:71086215-71086234 | MS.gene038141:CDS | 60.0% | |
AGCAACCACCGTCGTTGTCG+CGG | + | chr5.1:71086213-71086232 | None:intergenic | 60.0% | |
GCAGCAGCTTCAAGTGGTGG+TGG | - | chr5.1:71087248-71087267 | MS.gene038141:intron | 60.0% | |
! | GTGGCGGGGTTAAGAGAGTG+AGG | + | chr5.1:71085765-71085784 | None:intergenic | 60.0% |
!! | CTTCTGGAGCAGCAGCACGA+AGG | + | chr5.1:71085548-71085567 | None:intergenic | 60.0% |
!! | GCAGCTTCAAGTGGTGGTGG+AGG | - | chr5.1:71087251-71087270 | MS.gene038141:intron | 60.0% |
!! | GGGTACCGGCTGCTAGAAGA+AGG | - | chr5.1:71086171-71086190 | MS.gene038141:CDS | 60.0% |
!! | GGTGGTGGAGGGTTACTTGG+AGG | - | chr5.1:71087263-71087282 | MS.gene038141:intron | 60.0% |
ACGACGGTGGTTGCTGGTGG+TGG | - | chr5.1:71086218-71086237 | MS.gene038141:CDS | 65.0% | |
CTTAACCCCGCCACCGCTCT+CGG | - | chr5.1:71085771-71085790 | MS.gene038141:intron | 65.0% | |
GCCGGGTCAAGTACGTGCAC+CGG | - | chr5.1:71086971-71086990 | MS.gene038141:intron | 65.0% | |
GCCGGTGCACGTACTTGACC+CGG | + | chr5.1:71086975-71086994 | None:intergenic | 65.0% | |
GCGACAACGACGGTGGTTGC+TGG | - | chr5.1:71086212-71086231 | MS.gene038141:CDS | 65.0% | |
GGAAACGCCGGAGCTTCCAC+CGG | - | chr5.1:71085603-71085622 | MS.gene038141:intron | 65.0% | |
GGTGGAAGCTCCGGCGTTTC+CGG | + | chr5.1:71085604-71085623 | None:intergenic | 65.0% | |
TTCAATGCGGGTCCCACCGC+CGG | - | chr5.1:71085582-71085601 | MS.gene038141:intron | 65.0% | |
TTCGACCGCGACAACGACGG+TGG | - | chr5.1:71086205-71086224 | MS.gene038141:CDS | 65.0% | |
!! | TAATCCGGTGGTGGGTCCGG+TGG | + | chr5.1:71085622-71085641 | None:intergenic | 65.0% |
AACCCCGACACCGAGAGCGG+TGG | + | chr5.1:71085784-71085803 | None:intergenic | 70.0% | |
GCTTCCACCGGACCCACCAC+CGG | - | chr5.1:71085615-71085634 | MS.gene038141:intron | 70.0% | |
GGAAGCTCCGGCGTTTCCGG+CGG | + | chr5.1:71085601-71085620 | None:intergenic | 70.0% | |
GGTGGGTCCGGTGGAAGCTC+CGG | + | chr5.1:71085613-71085632 | None:intergenic | 70.0% | |
AGCTCCGGCGTTTCCGGCGG+TGG | + | chr5.1:71085598-71085617 | None:intergenic | 75.0% | |
CCCGACACCGAGAGCGGTGG+CGG | + | chr5.1:71085781-71085800 | None:intergenic | 75.0% | |
CCGACACCGAGAGCGGTGGC+GGG | + | chr5.1:71085780-71085799 | None:intergenic | 75.0% | |
CGACACCGAGAGCGGTGGCG+GGG | + | chr5.1:71085779-71085798 | None:intergenic | 75.0% | |
GCTCCGGCGTTTCCGGCGGT+GGG | + | chr5.1:71085597-71085616 | None:intergenic | 75.0% | |
GGTCCCACCGCCGGAAACGC+CGG | - | chr5.1:71085591-71085610 | MS.gene038141:intron | 75.0% | |
! | CCCGCCACCGCTCTCGGTGT+CGG | - | chr5.1:71085777-71085796 | MS.gene038141:intron | 75.0% |
!! | CCGCCACCGCTCTCGGTGTC+GGG | - | chr5.1:71085778-71085797 | MS.gene038141:intron | 75.0% |
!! | CGCCACCGCTCTCGGTGTCG+GGG | - | chr5.1:71085779-71085798 | MS.gene038141:intron | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 71084953 | 71087313 | 71084953 | ID=MS.gene038141 |
chr5.1 | mRNA | 71084953 | 71087313 | 71084953 | ID=MS.gene038141.t1;Parent=MS.gene038141 |
chr5.1 | exon | 71087274 | 71087313 | 71087274 | ID=MS.gene038141.t1.exon1;Parent=MS.gene038141.t1 |
chr5.1 | CDS | 71087274 | 71087313 | 71087274 | ID=cds.MS.gene038141.t1;Parent=MS.gene038141.t1 |
chr5.1 | exon | 71085904 | 71086797 | 71085904 | ID=MS.gene038141.t1.exon2;Parent=MS.gene038141.t1 |
chr5.1 | CDS | 71085904 | 71086797 | 71085904 | ID=cds.MS.gene038141.t1;Parent=MS.gene038141.t1 |
chr5.1 | exon | 71084953 | 71085317 | 71084953 | ID=MS.gene038141.t1.exon3;Parent=MS.gene038141.t1 |
chr5.1 | CDS | 71084953 | 71085317 | 71084953 | ID=cds.MS.gene038141.t1;Parent=MS.gene038141.t1 |
Gene Sequence |
Protein sequence |