AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038141


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038141.t1 MTR_5g089750 91.029 379 27 4 3 380 44 416 0.0 590
MS.gene038141.t1 MTR_3g014660 42.025 326 147 9 98 416 39 329 3.91e-68 220
MS.gene038141.t1 MTR_8g039110 38.272 324 159 10 83 389 8 307 1.62e-61 202
MS.gene038141.t1 MTR_8g076620 45.213 188 71 5 183 367 94 252 1.13e-42 153
MS.gene038141.t1 MTR_5g021130 51.829 164 70 4 206 365 93 251 2.77e-40 146
MS.gene038141.t1 MTR_3g112510 41.081 185 91 4 203 385 76 244 5.57e-34 129
MS.gene038141.t1 MTR_4g071110 39.216 153 61 3 213 365 17 137 2.45e-27 110
MS.gene038141.t1 MTR_0363s0040 33.649 211 110 7 83 287 8 194 1.06e-26 107
MS.gene038141.t1 MTR_1g023230 86.667 45 6 0 213 257 122 166 2.95e-20 90.1
MS.gene038141.t1 MTR_0105s0070 63.636 33 12 0 215 247 44 76 5.84e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038141.t1 AT5G12330 48.252 429 148 19 15 411 9 395 4.99e-95 291
MS.gene038141.t1 AT5G12330 48.378 339 123 12 86 411 9 308 1.70e-79 249
MS.gene038141.t1 AT5G12330 48.378 339 123 12 86 411 9 308 1.70e-79 249
MS.gene038141.t1 AT5G66350 50.000 158 65 3 213 369 120 264 7.32e-44 156
MS.gene038141.t1 AT5G66350 50.000 158 65 3 213 369 120 264 1.15e-43 155
MS.gene038141.t1 AT5G66350 50.000 158 65 3 213 369 120 264 1.31e-43 155
MS.gene038141.t1 AT1G75520 41.176 238 93 10 194 407 110 324 8.48e-43 154
MS.gene038141.t1 AT1G19790 47.619 168 82 3 200 365 106 269 3.35e-41 149
MS.gene038141.t1 AT1G19790 47.619 168 82 3 200 365 106 269 3.35e-41 149
MS.gene038141.t1 AT3G51060 40.517 232 99 7 146 363 76 282 5.11e-41 150
MS.gene038141.t1 AT4G36260 42.797 236 104 7 137 367 37 246 5.34e-41 148
MS.gene038141.t1 AT2G18120 42.541 181 82 2 191 371 50 208 1.41e-38 139
MS.gene038141.t1 AT2G18120 42.541 181 84 2 191 371 50 210 3.04e-38 138
MS.gene038141.t1 AT3G54430 42.353 170 73 3 209 377 37 182 5.61e-37 134
MS.gene038141.t1 AT2G21400 40.881 159 71 2 213 371 10 145 2.93e-34 126
MS.gene038141.t1 AT2G21400 40.881 159 71 2 213 371 9 144 3.03e-34 126
MS.gene038141.t1 AT2G21400 40.000 160 56 2 213 371 10 130 3.95e-33 123
MS.gene038141.t1 AT2G21400 40.000 160 56 2 213 371 9 129 4.00e-33 123
MS.gene038141.t1 AT5G12330 45.228 241 82 9 86 311 9 214 3.93e-32 122
MS.gene038141.t1 AT5G33210 72.222 54 15 0 211 264 15 68 4.69e-21 88.2
MS.gene038141.t1 AT5G33210 72.222 54 15 0 211 264 50 103 1.24e-20 89.0

Find 126 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATACAAGTCCAACAAATT+TGG 0.195666 5.1:-71086261 MS.gene038141:CDS
CATGGTACTGGTGGGTTAAC+TGG 0.215140 5.1:-71086236 MS.gene038141:CDS
TCATCTAGGTCCATTAATTA+TGG 0.227585 5.1:-71086596 MS.gene038141:CDS
AACCTTTCTGAACTTCATTT+AGG 0.241697 5.1:-71085110 MS.gene038141:CDS
AGGAGATTGCCTTCAGATTC+AGG 0.251476 5.1:-71086761 MS.gene038141:CDS
GGTGGAAGCTCCGGCGTTTC+CGG 0.252237 5.1:+71086643 None:intergenic
GGTTCTAGTGGTTCAACTTC+TGG 0.271027 5.1:-71086005 MS.gene038141:CDS
CCGCCACCGCTCTCGGTGTC+GGG 0.292941 5.1:-71086466 MS.gene038141:CDS
TTACTTGGAGGTTCAGCTTA+TGG 0.298507 5.1:-71084969 MS.gene038141:CDS
ACCAACAAGGAATTCAGTTT+TGG 0.307252 5.1:-71086379 MS.gene038141:CDS
TGATCATGGTGTTGAGAATA+GGG 0.324275 5.1:-71085144 MS.gene038141:CDS
CATCTCAGGTCCATAATTAA+TGG 0.328906 5.1:+71086586 None:intergenic
AAACCGAGTGAAAGATCTTC+TGG 0.334650 5.1:+71086683 None:intergenic
AGCTCCGGCGTTTCCGGCGG+TGG 0.340870 5.1:+71086649 None:intergenic
ACTGGTGGGTTAACTGGTTC+TGG 0.346294 5.1:-71086230 MS.gene038141:CDS
GCCAAAACTGAATTCCTTGT+TGG 0.364262 5.1:+71086378 None:intergenic
AGTGGTGGTGGAGGGTTACT+TGG 0.368806 5.1:-71084984 MS.gene038141:CDS
ATGATCATGGTGTTGAGAAT+AGG 0.379627 5.1:-71085145 MS.gene038141:CDS
CTACTCATGTTAAGAGTACT+TGG 0.387799 5.1:-71086094 MS.gene038141:CDS
AGTCCAACAAATTTGGTTCA+TGG 0.393800 5.1:-71086254 MS.gene038141:CDS
TGAGAATTAACAAACCTTGA+TGG 0.401434 5.1:+71085889 None:intergenic
GCGACAACGACGGTGGTTGC+TGG 0.403885 5.1:-71086032 MS.gene038141:CDS
CCCGACACCGAGAGCGGTGG+CGG 0.404701 5.1:+71086466 None:intergenic
AGAAGGATTGTAGTAATAGA+AGG 0.407133 5.1:-71086154 MS.gene038141:CDS
GAGGTAGTATCAAAGCTTCT+AGG 0.414831 5.1:+71085915 None:intergenic
CTTAACCCCGCCACCGCTCT+CGG 0.417771 5.1:-71086473 MS.gene038141:CDS
GTACCATGAACCAAATTTGT+TGG 0.418091 5.1:+71086251 None:intergenic
CCCGCCACCGCTCTCGGTGT+CGG 0.421375 5.1:-71086467 MS.gene038141:CDS
CTTTCACTCGGTTTCAATGC+GGG 0.422098 5.1:-71086674 MS.gene038141:CDS
TACTACAATCCTTCTTCGCT+TGG 0.423666 5.1:+71086162 None:intergenic
ACAAATTTGGTTCATGGTAC+TGG 0.423871 5.1:-71086248 MS.gene038141:CDS
CATTTAGGTGGTGGTGGTGG+TGG 0.424372 5.1:-71085095 MS.gene038141:CDS
GGTGGTGGTGGTAATAATAA+TGG 0.432992 5.1:-71085083 MS.gene038141:CDS
GGTGGGTCCGGTGGAAGCTC+CGG 0.434590 5.1:+71086634 None:intergenic
TTCAATGCGGGTCCCACCGC+CGG 0.436323 5.1:-71086662 MS.gene038141:CDS
GCAGCTTCAAGTGGTGGTGG+AGG 0.442810 5.1:-71084993 MS.gene038141:CDS
AATGGCGGTGCTAATAGAAA+TGG 0.444064 5.1:-71085065 MS.gene038141:CDS
GATTGTTATGGTGGTGGTGG+TGG 0.451027 5.1:+71086528 None:intergenic
ATATAATCCGGTGGTGGGTC+CGG 0.460177 5.1:+71086622 None:intergenic
TGTTGTTCCTCCACCACTAC+TGG 0.460746 5.1:+71086205 None:intergenic
TCTGAACTTCATTTAGGTGG+TGG 0.463166 5.1:-71085104 MS.gene038141:CDS
CTTCATTTAGGTGGTGGTGG+TGG 0.465476 5.1:-71085098 MS.gene038141:CDS
CATTAATTATGGACCTGAGA+TGG 0.472294 5.1:-71086585 MS.gene038141:CDS
AAGATGATGAGAGAAGAAAA+TGG 0.473083 5.1:-71087273 MS.gene038141:intron
GGTGGTGGAGGGTTACTTGG+AGG 0.474597 5.1:-71084981 MS.gene038141:CDS
GATACTACCTCTAGCCATCA+AGG 0.481688 5.1:-71085903 MS.gene038141:intron
CCGGATTATATAATTCATCT+AGG 0.484439 5.1:-71086610 MS.gene038141:CDS
GTTTGTGAAGCAATAAGTCT+AGG 0.489243 5.1:+71085972 None:intergenic
GTCTTCTTCATCACCAATGA+TGG 0.489923 5.1:-71085039 MS.gene038141:CDS
GGTTTCAAAGATTCTATGCC+GGG 0.497066 5.1:-71085290 MS.gene038141:CDS
TTGTGGAAACCAAGCGAAGA+AGG 0.497994 5.1:-71086171 MS.gene038141:CDS
GGGTACCGGCTGCTAGAAGA+AGG 0.498642 5.1:-71086073 MS.gene038141:CDS
CAAGTACTCTTAACATGAGT+AGG 0.499272 5.1:+71086095 None:intergenic
TCATGAGAAGGATCCATCAT+TGG 0.499688 5.1:+71085026 None:intergenic
GAGCTGCTTCATGATTGTTA+TGG 0.501220 5.1:+71086516 None:intergenic
AAATGAAGTTCAGAAAGGTT+AGG 0.504881 5.1:+71085113 None:intergenic
GTTGCTGGTGGTGGTTCTAG+TGG 0.506006 5.1:-71086017 MS.gene038141:CDS
GAACTTCATTTAGGTGGTGG+TGG 0.506112 5.1:-71085101 MS.gene038141:CDS
CTTCATGATTGTTATGGTGG+TGG 0.507878 5.1:+71086522 None:intergenic
CCGACACCGAGAGCGGTGGC+GGG 0.513284 5.1:+71086467 None:intergenic
CCTAGATGAATTATATAATC+CGG 0.516389 5.1:+71086610 None:intergenic
CATGATTGTTATGGTGGTGG+TGG 0.519577 5.1:+71086525 None:intergenic
GGTCCCACCGCCGGAAACGC+CGG 0.524097 5.1:-71086653 MS.gene038141:CDS
GCTCCGGCGTTTCCGGCGGT+GGG 0.525360 5.1:+71086650 None:intergenic
ACGACGGTGGTTGCTGGTGG+TGG 0.527037 5.1:-71086026 MS.gene038141:CDS
TGAATTATATAATCCGGTGG+TGG 0.528238 5.1:+71086616 None:intergenic
TTCTGGAGCAGCAGCACGAA+GGG 0.528350 5.1:+71086700 None:intergenic
ATTAATTATGGACCTGAGAT+GGG 0.532955 5.1:-71086584 MS.gene038141:CDS
CTTTCTGAACTTCATTTAGG+TGG 0.534449 5.1:-71085107 MS.gene038141:CDS
CATGGAGAAGCTGTGAGTAA+AGG 0.534475 5.1:+71086437 None:intergenic
CGTTCCCTTCTTCTAGCAGC+CGG 0.537437 5.1:+71086068 None:intergenic
GCAGCAGCTTCAAGTGGTGG+TGG 0.540984 5.1:-71084996 MS.gene038141:CDS
ACTGGTTCTGGTACCAGTAG+TGG 0.546183 5.1:-71086218 MS.gene038141:CDS
GCTTCCACCGGACCCACCAC+CGG 0.548718 5.1:-71086629 MS.gene038141:CDS
AGAACTTGTTGTAAAAGTAG+AGG 0.550532 5.1:-71086128 MS.gene038141:CDS
AGGTTTCAAAGATTCTATGC+CGG 0.555014 5.1:-71085291 MS.gene038141:CDS
AATTTGGTTCATGGTACTGG+TGG 0.555469 5.1:-71086245 MS.gene038141:CDS
ACAACAAACATACCCATCTC+AGG 0.556410 5.1:+71086572 None:intergenic
ACAACAACGTGTCAAGATTG+TGG 0.558898 5.1:-71086188 MS.gene038141:CDS
TGTTAAGAGTACTTGGGTAC+CGG 0.559268 5.1:-71086087 MS.gene038141:CDS
CACCTAAATGAAGTTCAGAA+AGG 0.561618 5.1:+71085108 None:intergenic
CTGCTTCATGATTGTTATGG+TGG 0.564872 5.1:+71086519 None:intergenic
GCTCCAGAAGATCTTTCACT+CGG 0.567750 5.1:-71086686 MS.gene038141:CDS
GAATTATATAATCCGGTGGT+GGG 0.570532 5.1:+71086617 None:intergenic
CGCCACCGCTCTCGGTGTCG+GGG 0.570886 5.1:-71086465 MS.gene038141:CDS
AGCAACCACCGTCGTTGTCG+CGG 0.571590 5.1:+71086034 None:intergenic
TATCAAGCTGTAGTGAAGAT+TGG 0.579339 5.1:-71085194 MS.gene038141:CDS
ATATAGTTGTGGCTACTACA+AGG 0.581940 5.1:-71086781 MS.gene038141:intron
TTCTTCGACCGCGACAACGA+CGG 0.583043 5.1:-71086042 MS.gene038141:CDS
GGAAACGCCGGAGCTTCCAC+CGG 0.586967 5.1:-71086641 MS.gene038141:CDS
TAATCCGGTGGTGGGTCCGG+TGG 0.587770 5.1:+71086625 None:intergenic
GCCGGGTCAAGTACGTGCAC+CGG 0.588438 5.1:-71085273 MS.gene038141:CDS
AAAGAAAACCTTTGAAAACA+TGG 0.590040 5.1:+71085168 None:intergenic
CTAACACACTTGAATAGAGC+CGG 0.591611 5.1:+71085254 None:intergenic
TCTGGTACCAGTAGTGGTGG+AGG 0.592565 5.1:-71086212 MS.gene038141:CDS
CGACACCGAGAGCGGTGGCG+GGG 0.592680 5.1:+71086468 None:intergenic
ATTTGGTTCATGGTACTGGT+GGG 0.594801 5.1:-71086244 MS.gene038141:CDS
GGAAGCTCCGGCGTTTCCGG+CGG 0.598478 5.1:+71086646 None:intergenic
AGTATCAAAGCTTCTAGGAG+GGG 0.599007 5.1:+71085920 None:intergenic
AAGTACTCTTAACATGAGTA+GGG 0.604249 5.1:+71086096 None:intergenic
CAAGCTGTAGTGAAGATTGG+TGG 0.605202 5.1:-71085191 MS.gene038141:CDS
CAGCTTCAAGTGGTGGTGGA+GGG 0.610373 5.1:-71084992 MS.gene038141:CDS
GCCGGTGCACGTACTTGACC+CGG 0.610717 5.1:+71085272 None:intergenic
TATGCAGCAGCTTCAAGTGG+TGG 0.610824 5.1:-71084999 MS.gene038141:CDS
GTAGTATCAAAGCTTCTAGG+AGG 0.611169 5.1:+71085918 None:intergenic
GCAAAAGCTCCTGAATCTGA+AGG 0.612169 5.1:+71086752 None:intergenic
TAGTATCAAAGCTTCTAGGA+GGG 0.613507 5.1:+71085919 None:intergenic
GGTTCTGGTACCAGTAGTGG+TGG 0.613955 5.1:-71086215 MS.gene038141:CDS
AGAGTGACATCAGTGGATGA+TGG 0.614276 5.1:-71085233 MS.gene038141:CDS
TAACAAACCTTGATGGCTAG+AGG 0.619709 5.1:+71085896 None:intergenic
TTCGACCGCGACAACGACGG+TGG 0.620852 5.1:-71086039 MS.gene038141:CDS
CTTCTGGAGCAGCAGCACGA+AGG 0.625376 5.1:+71086699 None:intergenic
TGGTGGTGATGAAAAGAAGA+TGG 0.632371 5.1:+71086545 None:intergenic
TACTCATGTTAAGAGTACTT+GGG 0.637418 5.1:-71086093 MS.gene038141:CDS
GCTGCATAAACATCATGAGA+AGG 0.637740 5.1:+71085014 None:intergenic
GGTACCGGCTGCTAGAAGAA+GGG 0.655941 5.1:-71086072 MS.gene038141:CDS
AACCCCGACACCGAGAGCGG+TGG 0.656167 5.1:+71086463 None:intergenic
GTGGCGGGGTTAAGAGAGTG+AGG 0.668996 5.1:+71086482 None:intergenic
ACAACGACGGTGGTTGCTGG+TGG 0.669044 5.1:-71086029 MS.gene038141:CDS
TCTTTCACTCGGTTTCAATG+CGG 0.669874 5.1:-71086675 MS.gene038141:CDS
GTTTATGCAGCAGCTTCAAG+TGG 0.670690 5.1:-71085002 MS.gene038141:CDS
AGATGAATTATATAATCCGG+TGG 0.675126 5.1:+71086613 None:intergenic
TATAACCCCGACACCGAGAG+CGG 0.681070 5.1:+71086460 None:intergenic
GGTGGTGGTAATAATAATGG+CGG 0.700948 5.1:-71085080 MS.gene038141:CDS
GTGTGTTAGAGTGACATCAG+TGG 0.704487 5.1:-71085240 MS.gene038141:CDS
AACAATAGAAGAAACCAACA+AGG 0.735803 5.1:-71086392 MS.gene038141:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGTTAGTTTAATTTTTT+GGG - chr5.1:71086867-71086886 MS.gene038141:intron 10.0%
!! AACCTAAAATTATATTATGA+AGG + chr5.1:71086397-71086416 None:intergenic 15.0%
!! TAAAAATTAGTTAAACTAGA+TGG + chr5.1:71086655-71086674 None:intergenic 15.0%
!! TAGAAAAATAGAAATAGAAA+AGG - chr5.1:71085007-71085026 MS.gene038141:CDS 15.0%
!!! CTTTAGTTAGTTTAATTTTT+TGG - chr5.1:71086866-71086885 MS.gene038141:intron 15.0%
!!! TTCCTTCATAATATAATTTT+AGG - chr5.1:71086392-71086411 MS.gene038141:CDS 15.0%
!! AAATAAAAATAGTGCAAGTT+TGG - chr5.1:71086434-71086453 MS.gene038141:CDS 20.0%
!! ATATATGTATGTATGTAATG+TGG + chr5.1:71085384-71085403 None:intergenic 20.0%
!! TATATGTATGTATGTAATGT+GGG + chr5.1:71085383-71085402 None:intergenic 20.0%
!!! ACTATATGTTTTTTGATGTA+TGG + chr5.1:71085450-71085469 None:intergenic 20.0%
!!! TTTTGTTGATAAAATCACAA+TGG - chr5.1:71086507-71086526 MS.gene038141:CDS 20.0%
! ATATGTATGTATGTAATGTG+GGG + chr5.1:71085382-71085401 None:intergenic 25.0%
! CACTATTTGAAAAAACAACA+AGG - chr5.1:71085945-71085964 MS.gene038141:CDS 25.0%
! CATCAAAAAACATATAGTTG+TGG - chr5.1:71085452-71085471 MS.gene038141:intron 25.0%
! CCTAGATGAATTATATAATC+CGG + chr5.1:71085637-71085656 None:intergenic 25.0%
! TAATACAAGTCCAACAAATT+TGG - chr5.1:71085983-71086002 MS.gene038141:CDS 25.0%
!! AAAGAAAACCTTTGAAAACA+TGG + chr5.1:71087079-71087098 None:intergenic 25.0%
!! AAAGGTTTTCTTTATGATCA+TGG - chr5.1:71087086-71087105 MS.gene038141:intron 25.0%
!!! ATGTTTTCATTTTCAAGACA+TGG + chr5.1:71085828-71085847 None:intergenic 25.0%
!!! ATTGTTTCTGTTTATAAGTG+TGG + chr5.1:71085303-71085322 None:intergenic 25.0%
!!! TTTTTCAAATAGTGTGAATG+TGG + chr5.1:71085939-71085958 None:intergenic 25.0%
AAATGAAGTTCAGAAAGGTT+AGG + chr5.1:71087134-71087153 None:intergenic 30.0%
AACAATAGAAGAAACCAACA+AGG - chr5.1:71085852-71085871 MS.gene038141:intron 30.0%
AACCTTTCTGAACTTCATTT+AGG - chr5.1:71087134-71087153 MS.gene038141:intron 30.0%
AACTATAAACTCTGCACAAT+TGG + chr5.1:71086540-71086559 None:intergenic 30.0%
AAGATGATGAGAGAAGAAAA+TGG - chr5.1:71084971-71084990 MS.gene038141:CDS 30.0%
AAGTACTCTTAACATGAGTA+GGG + chr5.1:71086151-71086170 None:intergenic 30.0%
AGAAGGATTGTAGTAATAGA+AGG - chr5.1:71086090-71086109 MS.gene038141:CDS 30.0%
AGATGAATTATATAATCCGG+TGG + chr5.1:71085634-71085653 None:intergenic 30.0%
ATTAATTATGGACCTGAGAT+GGG - chr5.1:71085660-71085679 MS.gene038141:intron 30.0%
CCGGATTATATAATTCATCT+AGG - chr5.1:71085634-71085653 MS.gene038141:intron 30.0%
GTAGCTAGTGAGAAAATTAA+TGG + chr5.1:71086601-71086620 None:intergenic 30.0%
TACTACTACTACTGTCAATT+TGG + chr5.1:71085164-71085183 None:intergenic 30.0%
TCATCTAGGTCCATTAATTA+TGG - chr5.1:71085648-71085667 MS.gene038141:intron 30.0%
TGAGAATTAACAAACCTTGA+TGG + chr5.1:71086358-71086377 None:intergenic 30.0%
! ATTTTCTCACTAGCTACATA+AGG - chr5.1:71086604-71086623 MS.gene038141:CDS 30.0%
! TAGATGGTTGATCTTTTCAT+TGG + chr5.1:71086639-71086658 None:intergenic 30.0%
!! AGAAAATTAATGGACTAGTG+TGG + chr5.1:71086591-71086610 None:intergenic 30.0%
!! AGAACTTGTTGTAAAAGTAG+AGG - chr5.1:71086116-71086135 MS.gene038141:CDS 30.0%
!! GTTGTTTTCTGATGATTTTC+TGG + chr5.1:71085233-71085252 None:intergenic 30.0%
!! TACTCATGTTAAGAGTACTT+GGG - chr5.1:71086151-71086170 MS.gene038141:CDS 30.0%
!!! TGAAGAGTTGTGTTTTGATT+TGG - chr5.1:71086908-71086927 MS.gene038141:intron 30.0%
AGGTTTCAAAGATTCTATGC+CGG - chr5.1:71086953-71086972 MS.gene038141:intron 35.0%
ATATAGTTGTGGCTACTACA+AGG - chr5.1:71085463-71085482 MS.gene038141:intron 35.0%
CAAGTACTCTTAACATGAGT+AGG + chr5.1:71086152-71086171 None:intergenic 35.0%
CACCTAAATGAAGTTCAGAA+AGG + chr5.1:71087139-71087158 None:intergenic 35.0%
CATCTCAGGTCCATAATTAA+TGG + chr5.1:71085661-71085680 None:intergenic 35.0%
CATTAATTATGGACCTGAGA+TGG - chr5.1:71085659-71085678 MS.gene038141:intron 35.0%
CTTTCTGAACTTCATTTAGG+TGG - chr5.1:71087137-71087156 MS.gene038141:intron 35.0%
GAATTATATAATCCGGTGGT+GGG + chr5.1:71085630-71085649 None:intergenic 35.0%
GATAAAATCACAATGGCTCA+AGG - chr5.1:71086514-71086533 MS.gene038141:CDS 35.0%
GTACCATGAACCAAATTTGT+TGG + chr5.1:71085996-71086015 None:intergenic 35.0%
GTTTGTGAAGCAATAAGTCT+AGG + chr5.1:71086275-71086294 None:intergenic 35.0%
TATCAAGCTGTAGTGAAGAT+TGG - chr5.1:71087050-71087069 MS.gene038141:intron 35.0%
TGAATTATATAATCCGGTGG+TGG + chr5.1:71085631-71085650 None:intergenic 35.0%
TGATGAGAGAAGAAAATGGT+CGG - chr5.1:71084975-71084994 MS.gene038141:CDS 35.0%
TGGTGTAGATCTTAAATGGT+GGG + chr5.1:71085359-71085378 None:intergenic 35.0%
TTCTGTTTATAAGTGTGGAG+AGG + chr5.1:71085298-71085317 None:intergenic 35.0%
! ACAAATTTGGTTCATGGTAC+TGG - chr5.1:71085996-71086015 MS.gene038141:CDS 35.0%
! ACCAACAAGGAATTCAGTTT+TGG - chr5.1:71085865-71085884 MS.gene038141:intron 35.0%
! AGTCCAACAAATTTGGTTCA+TGG - chr5.1:71085990-71086009 MS.gene038141:CDS 35.0%
! ATGATCATGGTGTTGAGAAT+AGG - chr5.1:71087099-71087118 MS.gene038141:intron 35.0%
! TAGTATCAAAGCTTCTAGGA+GGG + chr5.1:71086328-71086347 None:intergenic 35.0%
! TGATCATGGTGTTGAGAATA+GGG - chr5.1:71087100-71087119 MS.gene038141:intron 35.0%
! TTTTCGACTGGAAGAGAAAA+AGG + chr5.1:71085139-71085158 None:intergenic 35.0%
!! CTACTCATGTTAAGAGTACT+TGG - chr5.1:71086150-71086169 MS.gene038141:CDS 35.0%
AAACCGAGTGAAAGATCTTC+TGG + chr5.1:71085564-71085583 None:intergenic 40.0%
AAGTGTGGAGAGGAAAAGAA+AGG + chr5.1:71085288-71085307 None:intergenic 40.0%
ACAACAAACATACCCATCTC+AGG + chr5.1:71085675-71085694 None:intergenic 40.0%
ACAACAACGTGTCAAGATTG+TGG - chr5.1:71086056-71086075 MS.gene038141:CDS 40.0%
CTAACACACTTGAATAGAGC+CGG + chr5.1:71086993-71087012 None:intergenic 40.0%
CTGCTTCATGATTGTTATGG+TGG + chr5.1:71085728-71085747 None:intergenic 40.0%
CTTCATGATTGTTATGGTGG+TGG + chr5.1:71085725-71085744 None:intergenic 40.0%
GACTGGAAGAGAAAAAGGTA+TGG + chr5.1:71085134-71085153 None:intergenic 40.0%
GAGCTGCTTCATGATTGTTA+TGG + chr5.1:71085731-71085750 None:intergenic 40.0%
GAGGTAGTATCAAAGCTTCT+AGG + chr5.1:71086332-71086351 None:intergenic 40.0%
GCCAAAACTGAATTCCTTGT+TGG + chr5.1:71085869-71085888 None:intergenic 40.0%
GCTGCATAAACATCATGAGA+AGG + chr5.1:71087233-71087252 None:intergenic 40.0%
GGTGTAGATCTTAAATGGTG+GGG + chr5.1:71085358-71085377 None:intergenic 40.0%
GGTTTCAAAGATTCTATGCC+GGG - chr5.1:71086954-71086973 MS.gene038141:intron 40.0%
GTAGTATCAAAGCTTCTAGG+AGG + chr5.1:71086329-71086348 None:intergenic 40.0%
GTATTAATGTGTGCAGATGC+AGG - chr5.1:71086933-71086952 MS.gene038141:intron 40.0%
GTCTTCTTCATCACCAATGA+TGG - chr5.1:71087205-71087224 MS.gene038141:intron 40.0%
GTGGTGTAGATCTTAAATGG+TGG + chr5.1:71085360-71085379 None:intergenic 40.0%
GTGTAGATCTTAAATGGTGG+GGG + chr5.1:71085357-71085376 None:intergenic 40.0%
GTGTGGCTAACTAGTATAAC+TGG + chr5.1:71086574-71086593 None:intergenic 40.0%
TACTACAATCCTTCTTCGCT+TGG + chr5.1:71086085-71086104 None:intergenic 40.0%
TCATGAGAAGGATCCATCAT+TGG + chr5.1:71087221-71087240 None:intergenic 40.0%
TCTGAACTTCATTTAGGTGG+TGG - chr5.1:71087140-71087159 MS.gene038141:intron 40.0%
TCTTTCACTCGGTTTCAATG+CGG - chr5.1:71085569-71085588 MS.gene038141:intron 40.0%
TGTATGTATGTAATGTGGGG+TGG + chr5.1:71085379-71085398 None:intergenic 40.0%
TTACTTGGAGGTTCAGCTTA+TGG - chr5.1:71087275-71087294 MS.gene038141:CDS 40.0%
! AATGGCGGTGCTAATAGAAA+TGG - chr5.1:71087179-71087198 MS.gene038141:intron 40.0%
! AATTTGGTTCATGGTACTGG+TGG - chr5.1:71085999-71086018 MS.gene038141:CDS 40.0%
! AGTATCAAAGCTTCTAGGAG+GGG + chr5.1:71086327-71086346 None:intergenic 40.0%
! ATTCAGGAGCTTTTGCTGAT+TGG - chr5.1:71085499-71085518 MS.gene038141:intron 40.0%
! GGTGGTGGTAATAATAATGG+CGG - chr5.1:71087164-71087183 MS.gene038141:intron 40.0%
! GGTTAAGTTGTGAGAGAGAA+GGG + chr5.1:71085113-71085132 None:intergenic 40.0%
! TAACAAACCTTGATGGCTAG+AGG + chr5.1:71086351-71086370 None:intergenic 40.0%
! TGGTGGTGATGAAAAGAAGA+TGG + chr5.1:71085702-71085721 None:intergenic 40.0%
! TGGTTAAGTTGTGAGAGAGA+AGG + chr5.1:71085114-71085133 None:intergenic 40.0%
!! ATTGGTGGCCATGTTTTCAA+AGG - chr5.1:71087068-71087087 MS.gene038141:intron 40.0%
!! ATTTGGTTCATGGTACTGGT+GGG - chr5.1:71086000-71086019 MS.gene038141:CDS 40.0%
!! GGTGGTGGTGGTAATAATAA+TGG - chr5.1:71087161-71087180 MS.gene038141:intron 40.0%
!! TGTTAAGAGTACTTGGGTAC+CGG - chr5.1:71086157-71086176 MS.gene038141:CDS 40.0%
!! TTCAGGAGCTTTTGCTGATT+GGG - chr5.1:71085500-71085519 MS.gene038141:intron 40.0%
!!! GTCAATTTGGCTTTTTCGAC+TGG + chr5.1:71085151-71085170 None:intergenic 40.0%
AGAGTGACATCAGTGGATGA+TGG - chr5.1:71087011-71087030 MS.gene038141:intron 45.0%
AGGAGATTGCCTTCAGATTC+AGG - chr5.1:71085483-71085502 MS.gene038141:intron 45.0%
CAACACTCTTCTGTTTGTGC+TGG - chr5.1:71085086-71085105 MS.gene038141:CDS 45.0%
CAAGCTGTAGTGAAGATTGG+TGG - chr5.1:71087053-71087072 MS.gene038141:intron 45.0%
CATGGAGAAGCTGTGAGTAA+AGG + chr5.1:71085810-71085829 None:intergenic 45.0%
CTTTCACTCGGTTTCAATGC+GGG - chr5.1:71085570-71085589 MS.gene038141:intron 45.0%
GATACTACCTCTAGCCATCA+AGG - chr5.1:71086341-71086360 MS.gene038141:CDS 45.0%
GCAAAAGCTCCTGAATCTGA+AGG + chr5.1:71085495-71085514 None:intergenic 45.0%
GCTCCAGAAGATCTTTCACT+CGG - chr5.1:71085558-71085577 MS.gene038141:intron 45.0%
GGGGTGGTGTAGATCTTAAA+TGG + chr5.1:71085363-71085382 None:intergenic 45.0%
GTGGAGAGGAAAAGAAAGGA+AGG + chr5.1:71085284-71085303 None:intergenic 45.0%
GTGTGTTAGAGTGACATCAG+TGG - chr5.1:71087004-71087023 MS.gene038141:intron 45.0%
GTTTATGCAGCAGCTTCAAG+TGG - chr5.1:71087242-71087261 MS.gene038141:intron 45.0%
TGCTGTTGGAGCTGTAATTG+TGG + chr5.1:71085188-71085207 None:intergenic 45.0%
TTGTGGAAACCAAGCGAAGA+AGG - chr5.1:71086073-71086092 MS.gene038141:CDS 45.0%
! CAGCACAAACAGAAGAGTGT+TGG + chr5.1:71085088-71085107 None:intergenic 45.0%
! GAACTTCATTTAGGTGGTGG+TGG - chr5.1:71087143-71087162 MS.gene038141:intron 45.0%
! GGTTCTAGTGGTTCAACTTC+TGG - chr5.1:71086239-71086258 MS.gene038141:CDS 45.0%
!! CATGATTGTTATGGTGGTGG+TGG + chr5.1:71085722-71085741 None:intergenic 45.0%
TATGCAGCAGCTTCAAGTGG+TGG - chr5.1:71087245-71087264 MS.gene038141:intron 50.0%
TGTTGTTCCTCCACCACTAC+TGG + chr5.1:71086042-71086061 None:intergenic 50.0%
!! ACTGGTGGGTTAACTGGTTC+TGG - chr5.1:71086014-71086033 MS.gene038141:CDS 50.0%
!! ACTGGTTCTGGTACCAGTAG+TGG - chr5.1:71086026-71086045 MS.gene038141:CDS 50.0%
!! ATATAATCCGGTGGTGGGTC+CGG + chr5.1:71085625-71085644 None:intergenic 50.0%
!! CATGGTACTGGTGGGTTAAC+TGG - chr5.1:71086008-71086027 MS.gene038141:CDS 50.0%
!! CTTCATTTAGGTGGTGGTGG+TGG - chr5.1:71087146-71087165 MS.gene038141:intron 50.0%
!! GATTGTTATGGTGGTGGTGG+TGG + chr5.1:71085719-71085738 None:intergenic 50.0%
CGTTCCCTTCTTCTAGCAGC+CGG + chr5.1:71086179-71086198 None:intergenic 55.0%
GCTTCTGCTGCTGTTGCTGT+TGG + chr5.1:71085202-71085221 None:intergenic 55.0%
TATAACCCCGACACCGAGAG+CGG + chr5.1:71085787-71085806 None:intergenic 55.0%
TCTGGTACCAGTAGTGGTGG+AGG - chr5.1:71086032-71086051 MS.gene038141:CDS 55.0%
TTCTTCGACCGCGACAACGA+CGG - chr5.1:71086202-71086221 MS.gene038141:CDS 55.0%
! GGTTCTGGTACCAGTAGTGG+TGG - chr5.1:71086029-71086048 MS.gene038141:CDS 55.0%
!! AGTGGTGGTGGAGGGTTACT+TGG - chr5.1:71087260-71087279 MS.gene038141:intron 55.0%
!! CAGCTTCAAGTGGTGGTGGA+GGG - chr5.1:71087252-71087271 MS.gene038141:intron 55.0%
!! CATTTAGGTGGTGGTGGTGG+TGG - chr5.1:71087149-71087168 MS.gene038141:intron 55.0%
!! GGTACCGGCTGCTAGAAGAA+GGG - chr5.1:71086172-71086191 MS.gene038141:CDS 55.0%
!! GTTGCTGGTGGTGGTTCTAG+TGG - chr5.1:71086227-71086246 MS.gene038141:CDS 55.0%
!! TTCTGGAGCAGCAGCACGAA+GGG + chr5.1:71085547-71085566 None:intergenic 55.0%
ACAACGACGGTGGTTGCTGG+TGG - chr5.1:71086215-71086234 MS.gene038141:CDS 60.0%
AGCAACCACCGTCGTTGTCG+CGG + chr5.1:71086213-71086232 None:intergenic 60.0%
GCAGCAGCTTCAAGTGGTGG+TGG - chr5.1:71087248-71087267 MS.gene038141:intron 60.0%
! GTGGCGGGGTTAAGAGAGTG+AGG + chr5.1:71085765-71085784 None:intergenic 60.0%
!! CTTCTGGAGCAGCAGCACGA+AGG + chr5.1:71085548-71085567 None:intergenic 60.0%
!! GCAGCTTCAAGTGGTGGTGG+AGG - chr5.1:71087251-71087270 MS.gene038141:intron 60.0%
!! GGGTACCGGCTGCTAGAAGA+AGG - chr5.1:71086171-71086190 MS.gene038141:CDS 60.0%
!! GGTGGTGGAGGGTTACTTGG+AGG - chr5.1:71087263-71087282 MS.gene038141:intron 60.0%
ACGACGGTGGTTGCTGGTGG+TGG - chr5.1:71086218-71086237 MS.gene038141:CDS 65.0%
CTTAACCCCGCCACCGCTCT+CGG - chr5.1:71085771-71085790 MS.gene038141:intron 65.0%
GCCGGGTCAAGTACGTGCAC+CGG - chr5.1:71086971-71086990 MS.gene038141:intron 65.0%
GCCGGTGCACGTACTTGACC+CGG + chr5.1:71086975-71086994 None:intergenic 65.0%
GCGACAACGACGGTGGTTGC+TGG - chr5.1:71086212-71086231 MS.gene038141:CDS 65.0%
GGAAACGCCGGAGCTTCCAC+CGG - chr5.1:71085603-71085622 MS.gene038141:intron 65.0%
GGTGGAAGCTCCGGCGTTTC+CGG + chr5.1:71085604-71085623 None:intergenic 65.0%
TTCAATGCGGGTCCCACCGC+CGG - chr5.1:71085582-71085601 MS.gene038141:intron 65.0%
TTCGACCGCGACAACGACGG+TGG - chr5.1:71086205-71086224 MS.gene038141:CDS 65.0%
!! TAATCCGGTGGTGGGTCCGG+TGG + chr5.1:71085622-71085641 None:intergenic 65.0%
AACCCCGACACCGAGAGCGG+TGG + chr5.1:71085784-71085803 None:intergenic 70.0%
GCTTCCACCGGACCCACCAC+CGG - chr5.1:71085615-71085634 MS.gene038141:intron 70.0%
GGAAGCTCCGGCGTTTCCGG+CGG + chr5.1:71085601-71085620 None:intergenic 70.0%
GGTGGGTCCGGTGGAAGCTC+CGG + chr5.1:71085613-71085632 None:intergenic 70.0%
AGCTCCGGCGTTTCCGGCGG+TGG + chr5.1:71085598-71085617 None:intergenic 75.0%
CCCGACACCGAGAGCGGTGG+CGG + chr5.1:71085781-71085800 None:intergenic 75.0%
CCGACACCGAGAGCGGTGGC+GGG + chr5.1:71085780-71085799 None:intergenic 75.0%
CGACACCGAGAGCGGTGGCG+GGG + chr5.1:71085779-71085798 None:intergenic 75.0%
GCTCCGGCGTTTCCGGCGGT+GGG + chr5.1:71085597-71085616 None:intergenic 75.0%
GGTCCCACCGCCGGAAACGC+CGG - chr5.1:71085591-71085610 MS.gene038141:intron 75.0%
! CCCGCCACCGCTCTCGGTGT+CGG - chr5.1:71085777-71085796 MS.gene038141:intron 75.0%
!! CCGCCACCGCTCTCGGTGTC+GGG - chr5.1:71085778-71085797 MS.gene038141:intron 75.0%
!! CGCCACCGCTCTCGGTGTCG+GGG - chr5.1:71085779-71085798 MS.gene038141:intron 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 71084953 71087313 71084953 ID=MS.gene038141
chr5.1 mRNA 71084953 71087313 71084953 ID=MS.gene038141.t1;Parent=MS.gene038141
chr5.1 exon 71087274 71087313 71087274 ID=MS.gene038141.t1.exon1;Parent=MS.gene038141.t1
chr5.1 CDS 71087274 71087313 71087274 ID=cds.MS.gene038141.t1;Parent=MS.gene038141.t1
chr5.1 exon 71085904 71086797 71085904 ID=MS.gene038141.t1.exon2;Parent=MS.gene038141.t1
chr5.1 CDS 71085904 71086797 71085904 ID=cds.MS.gene038141.t1;Parent=MS.gene038141.t1
chr5.1 exon 71084953 71085317 71084953 ID=MS.gene038141.t1.exon3;Parent=MS.gene038141.t1
chr5.1 CDS 71084953 71085317 71084953 ID=cds.MS.gene038141.t1;Parent=MS.gene038141.t1
Gene Sequence

>MS.gene038141

ATGAATGAAAGAAATAAGAAGATGATGAGAGAAGAAAATGGTCGGCAACAACAATAGAAAAATAGAAATAGAAAAGGTCGTTATTGAATTTTCTCATTCATTCACTGCTATTGCTCACTGTTAACACTGCAACCAACACTCTTCTGTTTGTGCTGGACCCTTCTCTCTCACAACTTAACCATACCTTTTTCTCTTCCAGTCGAAAAAGCCAAATTGACAGTAGTAGTAGTAGCCACAATTACAGCTCCAACAGCAACAGCAGCAGAAGCTGAAACTACCAGAAAATCATCAGAAAACAACAATAGCAGAATCATCAGATTAACTTGTTCCTTCCTTTCTTTTCCTCTCCACACTTATAAACAGAAACAATTTAAGAATATCTATCTATATCTATATTCTCACCCCCACCATTTAAGATCTACACCACCCCACATTACATACATACATATATAGCGTTACTTTTACTCTACAACAAAAAATAATAATATTATTAACCATACATCAAAAAACATATAGTTGTGGCTACTACAAGGAGATTGCCTTCAGATTCAGGAGCTTTTGCTGATTGGGCAGCAACTAATTCATCAACAACCCTTCGTGCTGCTGCTCCAGAAGATCTTTCACTCGGTTTCAATGCGGGTCCCACCGCCGGAAACGCCGGAGCTTCCACCGGACCCACCACCGGATTATATAATTCATCTAGGTCCATTAATTATGGACCTGAGATGGGTATGTTTGTTGTAGCACCATCTTCTTTTCATCACCACCACCACCACCATAACAATCATGAAGCAGCTCTTATGTCTGATCCTCACTCTCTTAACCCCGCCACCGCTCTCGGTGTCGGGGTTATACCTTTACTCACAGCTTCTCCATGTCTTGAAAATGAAAACATGTTAAACAATAGAAGAAACCAACAAGGAATTCAGTTTTGGCATGAACAACATCATCATCATCAACAGCATCAACAACAACAACAAAGTCCACATTCACACTATTTGAAAAAACAACAAGGTTTTCTTGATCATCATAATACAAGTCCAACAAATTTGGTTCATGGTACTGGTGGGTTAACTGGTTCTGGTACCAGTAGTGGTGGAGGAACAACAACGTGTCAAGATTGTGGAAACCAAGCGAAGAAGGATTGTAGTAATAGAAGGTGTAGAACTTGTTGTAAAAGTAGAGGTTTTGATTGCCCTACTCATGTTAAGAGTACTTGGGTACCGGCTGCTAGAAGAAGGGAACGTCTTTCTTCGACCGCGACAACGACGGTGGTTGCTGGTGGTGGTTCTAGTGGTTCAACTTCTGGTGCTAAGAAACCTAGACTTATTGCTTCACAAACTACTTCTCATACTTCTACTTCTAATACTACCCCTCCTAGAAGCTTTGATACTACCTCTAGCCATCAAGGTTTGTTAATTCTCATCTTTTTTTTTTTCTTCCTTCATAATATAATTTTAGGTTTTTCTAAATGTTACAAAAAATAAAAATAGTGCAAGTTTGGAATCATGATGAGTTTGACAAAATGATATTCTTGTAGCTCAAAGTACTTTTTTTTGTTGATAAAATCACAATGGCTCAAGGCCAATTGTGCAGAGTTTATAGTTAGATGTAAAAGCCAGTTATACTAGTTAGCCACACTAGTCCATTAATTTTCTCACTAGCTACATAAGGCATACATAGCCAATGAAAAGATCAACCATCTAGTTTAACTAATTTTTAACTCTAATTCATTGTCAATCTAAACATACACTATAAACTCTTGCATGCTTTTTCGTAGCGTTGACGATGAAATGATCTTGATCAAAATTAGTTCAAGATTTGATTCTTTAATTAACTTGTTAAACTTGATTCATGAACGAATGAGTTGAGCTCGAGTAATCGACTTGTTTAGTTGATGAAATAGTTTAATACTTTAGTTAGTTTAATTTTTTGGGTTTATTAGTGTGTTAATTTGAAGAGTTGTGTTTTGATTTGGTTGTATTAATGTGTGCAGATGCAGGTTTCAAAGATTCTATGCCGGGTCAAGTACGTGCACCGGCTCTATTCAAGTGTGTTAGAGTGACATCAGTGGATGATGGAAAAGATGAGTATGCATATCAAGCTGTAGTGAAGATTGGTGGCCATGTTTTCAAAGGTTTTCTTTATGATCATGGTGTTGAGAATAGGGAAGTTTATCCTAACCTTTCTGAACTTCATTTAGGTGGTGGTGGTGGTGGTAATAATAATGGCGGTGCTAATAGAAATGGAGTGTCTTCTTCATCACCAATGATGGATCCTTCTCATGATGTTTATGCAGCAGCTTCAAGTGGTGGTGGAGGGTTACTTGGAGGTTCAGCTTATGGTAATCAAATAAATTGA

Protein sequence

>MS.gene038141.t1

MNERNKKMMREENVVATTRRLPSDSGAFADWAATNSSTTLRAAAPEDLSLGFNAGPTAGNAGASTGPTTGLYNSSRSINYGPEMGMFVVAPSSFHHHHHHHNNHEAALMSDPHSLNPATALGVGVIPLLTASPCLENENMLNNRRNQQGIQFWHEQHHHHQQHQQQQQSPHSHYLKKQQGFLDHHNTSPTNLVHGTGGLTGSGTSSGGGTTTCQDCGNQAKKDCSNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERLSSTATTTVVAGGGSSGSTSGAKKPRLIASQTTSHTSTSNTTPPRSFDTTSSHQDAGFKDSMPGQVRAPALFKCVRVTSVDDGKDEYAYQAVVKIGGHVFKGFLYDHGVENREVYPNLSELHLGGGGGGNNNGGANRNGVSSSSPMMDPSHDVYAAASSGGGGLLGGSAYGNQIN