AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038184

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038184.t1 MTR_5g089320 88.725 204 5 1 5 190 226 429 5.30e-125 363
MS.gene038184.t1 MTR_0028s0170 81.373 204 20 1 5 190 236 439 4.42e-119 348
MS.gene038184.t1 MTR_8g099095 65.196 204 53 1 5 190 224 427 4.62e-90 274
MS.gene038184.t1 MTR_5g009830 65.686 204 51 2 5 190 225 427 2.94e-89 272
MS.gene038184.t1 MTR_4g132070 64.532 203 54 1 6 190 250 452 1.57e-86 265
MS.gene038184.t1 MTR_5g092810 62.562 203 58 1 6 190 251 453 7.96e-84 258
MS.gene038184.t1 MTR_3g051770 64.000 200 53 2 6 187 243 441 1.35e-82 255
MS.gene038184.t1 MTR_5g009830 64.921 191 48 2 5 177 225 414 3.35e-82 251
MS.gene038184.t1 MTR_1g026190 62.069 203 59 1 6 190 241 443 9.70e-82 253
MS.gene038184.t1 MTR_1g041150 59.901 202 63 1 7 190 278 479 4.42e-78 245
MS.gene038184.t1 MTR_7g106710 58.824 204 66 1 5 190 293 496 2.81e-77 243
MS.gene038184.t1 MTR_1g096490 58.537 205 67 1 4 190 187 391 4.45e-77 240
MS.gene038184.t1 MTR_1g055255 58.333 204 67 1 5 190 282 485 6.01e-77 242
MS.gene038184.t1 MTR_7g106710 58.824 204 66 1 5 190 293 496 7.09e-77 242
MS.gene038184.t1 MTR_5g099240 55.882 204 72 1 5 190 182 385 5.52e-76 237
MS.gene038184.t1 MTR_3g098070 55.882 204 72 1 5 190 187 390 1.15e-75 236
MS.gene038184.t1 MTR_5g099240 55.882 204 72 1 5 190 254 457 2.79e-75 237
MS.gene038184.t1 MTR_8g095440 56.098 205 72 1 4 190 187 391 3.13e-75 235
MS.gene038184.t1 MTR_1g054865 55.610 205 73 1 4 190 318 522 2.60e-74 236
MS.gene038184.t1 MTR_3g098090 54.412 204 75 1 5 190 190 393 1.17e-72 229
MS.gene038184.t1 MTR_7g106710 55.721 201 71 1 5 187 293 493 8.00e-71 224
MS.gene038184.t1 MTR_8g095440 55.440 193 68 1 4 178 187 379 4.06e-70 219
MS.gene038184.t1 MTR_4g132040 54.455 202 73 2 7 190 256 456 1.27e-68 219
MS.gene038184.t1 MTR_4g107490 52.941 204 78 1 5 190 231 434 3.36e-66 213
MS.gene038184.t1 MTR_7g068710 50.000 204 84 1 5 190 214 417 1.03e-65 211
MS.gene038184.t1 MTR_7g091890 50.000 204 84 1 5 190 216 419 3.11e-61 200
MS.gene038184.t1 MTR_1g052530 44.395 223 103 2 5 206 210 432 5.61e-61 199
MS.gene038184.t1 MTR_7g091890 50.262 191 77 1 5 177 216 406 2.44e-57 187
MS.gene038184.t1 MTR_1g052530 46.354 192 85 1 5 178 210 401 5.44e-56 183
MS.gene038184.t1 MTR_4g066660 43.627 204 97 1 5 190 230 433 1.02e-55 186
MS.gene038184.t1 MTR_5g022030 42.927 205 98 2 5 190 259 463 1.95e-55 184
MS.gene038184.t1 MTR_5g022030 42.927 205 98 2 5 190 259 463 2.31e-55 185
MS.gene038184.t1 MTR_5g089440 64.748 139 28 2 53 190 18 136 7.25e-54 171
MS.gene038184.t1 MTR_7g106710 57.353 136 40 1 5 122 293 428 4.46e-48 163
MS.gene038184.t1 MTR_3g098070 53.676 136 45 1 5 122 187 322 1.18e-45 155
MS.gene038184.t1 MTR_7g106730 53.968 126 40 1 5 112 246 371 3.47e-41 144
MS.gene038184.t1 MTR_4g086660 31.897 232 134 5 5 213 299 529 1.59e-37 137
MS.gene038184.t1 MTR_8g079790 33.913 230 128 5 5 211 290 518 2.25e-37 137
MS.gene038184.t1 MTR_7g118020 31.718 227 131 5 5 209 306 530 5.78e-37 136
MS.gene038184.t1 MTR_5g017830 33.171 205 117 3 5 190 296 499 1.57e-36 134
MS.gene038184.t1 MTR_5g092815 54.237 118 36 1 6 105 250 367 2.09e-35 129
MS.gene038184.t1 MTR_3g092230 34.071 226 124 6 5 208 300 522 4.01e-35 130
MS.gene038184.t1 MTR_7g089480 34.066 182 102 1 5 168 303 484 2.16e-32 123
MS.gene038184.t1 MTR_1g101630 41.905 105 43 1 4 90 198 302 1.71e-18 83.6
MS.gene038184.t1 MTR_1g080020 37.963 108 48 2 5 93 163 270 4.69e-17 77.8
MS.gene038184.t1 MTR_3g099767 40.196 102 43 1 4 87 259 360 6.63e-17 79.0
MS.gene038184.t1 MTR_8g043970 26.316 190 101 5 8 159 208 396 8.67e-15 72.8
MS.gene038184.t1 MTR_7g116390 34.286 105 49 2 7 91 174 278 3.50e-12 64.7
MS.gene038184.t1 MTR_6g012990 35.644 101 47 3 5 88 173 272 1.74e-11 63.2
MS.gene038184.t1 MTR_6g048250 36.000 100 46 3 5 87 173 271 2.12e-11 62.8
MS.gene038184.t1 MTR_6g048250 36.000 100 46 3 5 87 173 271 2.13e-11 62.8
MS.gene038184.t1 MTR_6g048250 36.000 100 46 3 5 87 173 271 2.34e-11 62.8
MS.gene038184.t1 MTR_6g012990 35.644 101 47 3 5 88 173 272 2.93e-11 62.4
MS.gene038184.t1 MTR_6g012980 35.644 101 47 3 5 88 227 326 6.85e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038184.t1 AT5G12180 77.941 204 27 1 5 190 231 434 2.63e-111 329
MS.gene038184.t1 AT5G19360 76.961 204 29 1 5 190 226 429 4.33e-109 323
MS.gene038184.t1 AT4G23650 63.725 204 56 1 5 190 236 439 9.05e-89 271
MS.gene038184.t1 AT3G20410 62.562 203 58 1 6 190 250 452 6.84e-86 264
MS.gene038184.t1 AT3G20410 62.562 203 58 1 6 190 250 452 6.84e-86 264
MS.gene038184.t1 AT4G21940 63.547 203 55 2 6 190 261 462 1.36e-85 262
MS.gene038184.t1 AT1G50700 63.054 203 57 1 6 190 232 434 1.45e-85 261
MS.gene038184.t1 AT1G50700 63.054 203 57 1 6 190 232 434 3.66e-85 261
MS.gene038184.t1 AT4G21940 63.547 203 55 2 6 190 261 462 5.69e-85 262
MS.gene038184.t1 AT4G21940 63.547 203 55 2 6 190 261 462 1.26e-84 261
MS.gene038184.t1 AT4G04720 63.547 203 55 2 6 190 239 440 2.56e-84 259
MS.gene038184.t1 AT4G04720 63.547 203 55 2 6 190 239 440 2.56e-84 259
MS.gene038184.t1 AT1G50700 55.895 229 57 2 6 190 232 460 2.38e-79 247
MS.gene038184.t1 AT3G10660 58.824 204 66 1 5 190 344 547 4.40e-79 249
MS.gene038184.t1 AT3G10660 58.824 204 66 1 5 190 344 547 4.40e-79 249
MS.gene038184.t1 AT1G61950 60.099 203 63 1 6 190 258 460 8.24e-79 246
MS.gene038184.t1 AT4G38230 55.882 204 72 1 5 190 38 241 6.60e-78 237
MS.gene038184.t1 AT1G76040 58.128 203 66 2 6 190 33 234 1.21e-77 236
MS.gene038184.t1 AT1G76040 58.128 203 66 2 6 190 33 234 1.21e-77 236
MS.gene038184.t1 AT2G17290 56.863 204 70 1 5 190 243 446 1.70e-77 242
MS.gene038184.t1 AT2G17290 56.863 204 70 1 5 190 243 446 1.70e-77 242
MS.gene038184.t1 AT5G04870 57.353 204 69 1 5 190 308 511 2.16e-77 244
MS.gene038184.t1 AT4G35310 56.373 204 71 1 5 190 255 458 2.32e-77 242
MS.gene038184.t1 AT4G35310 56.373 204 71 1 5 190 255 458 2.32e-77 242
MS.gene038184.t1 AT4G38230 55.882 204 72 1 5 190 182 385 1.20e-76 238
MS.gene038184.t1 AT4G38230 55.882 204 72 1 5 190 182 385 1.20e-76 238
MS.gene038184.t1 AT4G38230 55.882 204 72 1 5 190 212 415 2.84e-76 238
MS.gene038184.t1 AT1G76040 58.128 203 66 2 6 190 271 472 2.73e-75 236
MS.gene038184.t1 AT4G09570 56.863 204 70 1 5 190 183 386 1.18e-74 234
MS.gene038184.t1 AT1G76040 58.128 203 66 2 6 190 271 472 1.20e-74 235
MS.gene038184.t1 AT1G35670 56.863 204 70 1 5 190 184 387 2.15e-74 233
MS.gene038184.t1 AT4G04740 52.212 226 81 3 6 205 228 452 4.65e-74 233
MS.gene038184.t1 AT4G04740 52.212 226 81 3 6 205 228 452 4.89e-74 233
MS.gene038184.t1 AT4G04740 52.212 226 81 3 6 205 228 452 4.89e-74 233
MS.gene038184.t1 AT4G04740 52.212 226 81 3 6 205 228 452 4.89e-74 233
MS.gene038184.t1 AT4G04740 52.212 226 81 3 6 205 228 452 4.89e-74 233
MS.gene038184.t1 AT4G04740 52.212 226 81 3 6 205 228 452 4.89e-74 233
MS.gene038184.t1 AT4G04740 52.212 226 81 3 6 205 228 452 4.89e-74 233
MS.gene038184.t1 AT4G04710 57.500 200 69 3 4 190 183 379 2.47e-71 224
MS.gene038184.t1 AT4G04710 57.500 200 69 3 4 190 197 393 2.98e-71 224
MS.gene038184.t1 AT5G23580 53.171 205 78 1 4 190 179 383 4.95e-71 224
MS.gene038184.t1 AT2G38910 54.146 205 76 1 4 190 291 495 6.81e-71 226
MS.gene038184.t1 AT4G04710 53.991 213 69 3 4 190 197 406 3.01e-69 220
MS.gene038184.t1 AT4G04695 55.172 203 72 2 6 190 191 392 5.00e-69 219
MS.gene038184.t1 AT4G04710 53.488 215 69 4 4 190 197 408 2.25e-67 215
MS.gene038184.t1 AT3G51850 50.980 204 82 1 5 190 212 415 1.20e-66 213
MS.gene038184.t1 AT3G51850 50.980 204 82 1 5 190 212 415 2.90e-66 213
MS.gene038184.t1 AT4G04700 52.709 203 77 2 6 190 191 392 4.78e-66 211
MS.gene038184.t1 AT1G18890 51.961 204 80 1 5 190 221 424 8.94e-64 207
MS.gene038184.t1 AT2G35890 48.544 206 87 2 4 190 289 494 9.03e-63 203
MS.gene038184.t1 AT2G35890 48.544 206 87 2 4 190 289 494 9.03e-63 203
MS.gene038184.t1 AT3G51850 51.309 191 75 1 5 177 212 402 1.63e-62 200
MS.gene038184.t1 AT5G12480 47.059 204 90 1 5 190 123 326 2.13e-60 195
MS.gene038184.t1 AT1G74740 49.510 204 85 1 5 190 217 420 2.16e-60 198
MS.gene038184.t1 AT5G12480 47.059 204 90 1 5 190 217 420 2.10e-59 195
MS.gene038184.t1 AT2G31500 44.608 204 95 1 5 190 224 427 1.29e-58 194
MS.gene038184.t1 AT5G19450 47.087 206 90 2 4 190 214 419 2.27e-58 192
MS.gene038184.t1 AT5G19450 47.087 206 90 2 4 190 214 419 2.27e-58 192
MS.gene038184.t1 AT3G57530 46.569 204 91 1 5 190 221 424 1.89e-57 190
MS.gene038184.t1 AT5G66210 42.927 205 98 2 5 190 222 426 1.74e-54 181
MS.gene038184.t1 AT3G57530 46.154 195 87 1 5 181 221 415 2.60e-54 179
MS.gene038184.t1 AT5G66210 42.927 205 98 2 5 190 222 426 2.75e-54 181
MS.gene038184.t1 AT2G41860 44.608 204 95 1 5 190 212 415 2.96e-54 181
MS.gene038184.t1 AT2G41860 44.608 204 95 1 5 190 212 415 3.15e-54 181
MS.gene038184.t1 AT5G66210 42.927 205 98 2 5 190 222 426 5.02e-54 181
MS.gene038184.t1 AT5G66210 42.927 205 98 2 5 190 222 426 5.02e-54 181
MS.gene038184.t1 AT2G17890 40.488 205 103 2 5 190 268 472 1.88e-53 180
MS.gene038184.t1 AT4G36070 39.450 218 111 3 5 201 231 448 2.81e-52 176
MS.gene038184.t1 AT4G36070 39.904 208 106 2 5 193 231 438 3.32e-52 177
MS.gene038184.t1 AT5G66210 43.750 192 89 2 5 177 222 413 2.44e-50 169
MS.gene038184.t1 AT5G66210 43.750 192 89 2 5 177 222 413 2.44e-50 169
MS.gene038184.t1 AT3G50530 33.190 232 131 5 5 213 310 540 5.01e-38 139
MS.gene038184.t1 AT3G50530 33.190 232 131 5 5 213 341 571 5.52e-38 139
MS.gene038184.t1 AT3G19100 32.328 232 133 5 5 213 306 536 1.86e-34 129
MS.gene038184.t1 AT3G49370 32.127 221 127 5 5 205 304 521 2.95e-34 128
MS.gene038184.t1 AT1G49580 31.034 232 137 4 5 213 312 543 3.18e-34 128
MS.gene038184.t1 AT5G24430 32.127 221 127 5 5 205 305 522 4.61e-34 128
MS.gene038184.t1 AT3G56760 34.270 178 98 2 5 164 286 462 2.29e-30 117
MS.gene038184.t1 AT2G41140 34.270 178 98 2 5 164 285 461 2.32e-30 117
MS.gene038184.t1 AT2G46700 32.308 195 111 3 5 180 124 316 5.96e-29 112
MS.gene038184.t1 AT2G46700 32.308 195 111 3 5 180 124 316 5.96e-29 112
MS.gene038184.t1 AT2G46700 32.308 195 111 3 5 180 305 497 6.17e-28 110
MS.gene038184.t1 AT1G12580 38.318 107 48 1 5 93 202 308 1.76e-17 80.9
MS.gene038184.t1 AT1G08650 34.862 109 52 2 4 93 171 279 2.04e-16 76.3
MS.gene038184.t1 AT1G12680 38.235 102 45 1 4 87 254 355 2.53e-16 77.4
MS.gene038184.t1 AT3G04530 37.864 103 45 2 8 91 171 273 7.95e-15 72.0
MS.gene038184.t1 AT3G01090 25.322 233 115 9 5 210 173 373 3.28e-12 65.5
MS.gene038184.t1 AT3G01090 25.322 233 115 9 5 210 173 373 3.28e-12 65.5
MS.gene038184.t1 AT3G01090 25.322 233 115 9 5 210 196 396 3.84e-12 65.1

Find 44 sgRNAs with CRISPR-Local

Find 113 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTGAAGCAGATGTTTA+AGG 0.208198 5.4:+70385444 MS.gene038184:CDS
TTAGAGCAACTTTCTTGAAT+TGG 0.325490 5.4:-70385279 None:intergenic
AAAAGTCAACATGTCCTCTT+AGG 0.332441 5.4:-70384940 None:intergenic
ACAAGAAGTTAAGCAATTAA+TGG 0.339015 5.4:+70385549 MS.gene038184:CDS
TTGACAATGCAGTGCTCAAT+AGG 0.360502 5.4:+70385233 MS.gene038184:CDS
CTTGAGCTCTTCAATTGTAA+TGG 0.375022 5.4:-70385491 None:intergenic
GCATTGTCAAGAGGTGTATC+AGG 0.402341 5.4:-70385220 None:intergenic
ATCCTTTGCTGAAGGTGAAA+TGG 0.408368 5.4:-70384981 None:intergenic
CATGTTATTCTCTGTTCAAT+CGG 0.411523 5.4:-70385765 None:intergenic
GGATTGAAGCAGATGTTTAA+GGG 0.418191 5.4:+70385445 MS.gene038184:CDS
ATTCAAGAAAGTTGCTCTAA+AGG 0.419322 5.4:+70385282 MS.gene038184:CDS
GGGCTTGCAAAACAAGGAAC+TGG 0.431849 5.4:+70385517 MS.gene038184:CDS
CTTATCAGAGAAAGAAATCA+TGG 0.439000 5.4:+70385423 MS.gene038184:CDS
ACGGACCAGAAGTAGACATT+TGG 0.450063 5.4:+70384783 MS.gene038184:CDS
ACACTCCAAATGTCTACTTC+TGG 0.450920 5.4:-70384788 None:intergenic
TATTTCCTCTTCAACACATC+AGG 0.460880 5.4:-70384761 None:intergenic
TATGCTGTAATCCTCTGCTT+GGG 0.464432 5.4:-70385031 None:intergenic
ATATGCTGTAATCCTCTGCT+TGG 0.465874 5.4:-70385032 None:intergenic
GAAGCAGATGTTTAAGGGTA+TGG 0.469104 5.4:+70385450 MS.gene038184:CDS
CAGGCAGACGCTGATGGTAA+TGG 0.472029 5.4:+70385690 MS.gene038184:intron
CTTCAGCAAAGGATCTTGTA+AGG 0.491058 5.4:+70384990 MS.gene038184:CDS
TCTCCGTCTTCCTTGATCCA+CGG 0.508702 5.4:-70385193 None:intergenic
CTCCATTTCACCTTCAGCAA+AGG 0.517768 5.4:+70384979 MS.gene038184:CDS
AATAGATCATCCGTGGATCA+AGG 0.520654 5.4:+70385183 MS.gene038184:intron
ACCAGTTTAAAAGATATTGT+TGG 0.526102 5.4:+70384719 MS.gene038184:CDS
ATATTCAATGCCATCCTAAG+AGG 0.535426 5.4:+70384926 MS.gene038184:CDS
CTTACAAGATCCTTTGCTGA+AGG 0.537489 5.4:-70384989 None:intergenic
GATGTGTTGAAGAGGAAATA+CGG 0.552364 5.4:+70384764 MS.gene038184:CDS
TGTAATGGTTCCACTGTTGT+CGG 0.558625 5.4:-70385476 None:intergenic
ATCTTTATCGAAGTATTGAA+AGG 0.559163 5.4:-70385797 None:intergenic
GTCAACATGTCCTCTTAGGA+TGG 0.577946 5.4:-70384936 None:intergenic
ACAATTGAAGAGCTCAAGCA+AGG 0.579738 5.4:+70385496 MS.gene038184:CDS
AAGCAAGGGCTTGCAAAACA+AGG 0.587055 5.4:+70385511 MS.gene038184:CDS
CAATTGAAGAGCTCAAGCAA+GGG 0.598566 5.4:+70385497 MS.gene038184:CDS
TTGAGCACTGCATTGTCAAG+AGG 0.599495 5.4:-70385229 None:intergenic
GAAGGTGAAATGGAGGGCCA+TGG 0.605402 5.4:-70384971 None:intergenic
AAATTACAGGCAGACGCTGA+TGG 0.614845 5.4:+70385684 MS.gene038184:intron
CTTTGCTGAAGGTGAAATGG+AGG 0.615396 5.4:-70384978 None:intergenic
CATCCGTGGATCAAGGAAGA+CGG 0.620629 5.4:+70385190 MS.gene038184:CDS
TTATCAGAGAAAGAAATCAT+GGG 0.628495 5.4:+70385424 MS.gene038184:CDS
TTGCACCTGATGTGTTGAAG+AGG 0.655674 5.4:+70384756 MS.gene038184:CDS
TTTGCTGAAGGTGAAATGGA+GGG 0.662601 5.4:-70384977 None:intergenic
TGAATTCAGATCCCAAGCAG+AGG 0.665782 5.4:+70385020 MS.gene038184:CDS
GGTATGGACACCGACAACAG+TGG 0.700002 5.4:+70385466 MS.gene038184:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTAATAAAATTTACATA+TGG + chr5.4:70385382-70385401 MS.gene038184:intron 10.0%
!! TTCAAAAAATATTTATAACT+CGG + chr5.4:70384396-70384415 MS.gene038184:intron 10.0%
!!! CTCATATATAATTTTTTTTA+AGG + chr5.4:70383989-70384008 MS.gene038184:intron 10.0%
!!! TTAGAATAATAGTTTTTTTT+AGG - chr5.4:70384504-70384523 None:intergenic 10.0%
!! AAATTAAAATAAACCAAGTT+AGG - chr5.4:70383949-70383968 None:intergenic 15.0%
!! AATAAAATTTACATATGGAA+AGG + chr5.4:70385387-70385406 MS.gene038184:intron 15.0%
!! AATTTAATTCATTAAGTGTT+TGG - chr5.4:70383925-70383944 None:intergenic 15.0%
!! CTATTATCTATATTAAAGTA+AGG + chr5.4:70384172-70384191 MS.gene038184:intron 15.0%
!! CTTACTTTAATATAGATAAT+AGG - chr5.4:70384174-70384193 None:intergenic 15.0%
!! TATATCTTATTCAGAATAAA+TGG - chr5.4:70384343-70384362 None:intergenic 15.0%
!!! AAAAAAAAGTTTTTGTGAAT+TGG - chr5.4:70384252-70384271 None:intergenic 15.0%
!!! ATATTTTTTGAATGAATGTA+CGG - chr5.4:70384388-70384407 None:intergenic 15.0%
!!! ATTTTTTCAACAAAAAAGAA+AGG - chr5.4:70384086-70384105 None:intergenic 15.0%
!!! TCTCTTTTTTTATTTTATAG+AGG + chr5.4:70383889-70383908 MS.gene038184:intron 15.0%
!! AAAAAAGAAAGGCAAAAATT+AGG - chr5.4:70384075-70384094 None:intergenic 20.0%
!! AAAACTATTATTCTAACTAG+CGG + chr5.4:70384508-70384527 MS.gene038184:intron 20.0%
!! AAATCATTAAGTAATCATAG+TGG - chr5.4:70385652-70385671 None:intergenic 20.0%
!! ATGAATTAAATTACCTAACT+TGG + chr5.4:70383933-70383952 MS.gene038184:intron 20.0%
!! ATTCAACTATTATGTTTAGA+TGG + chr5.4:70385086-70385105 MS.gene038184:intron 20.0%
!! ATTGATCAAAATCTTAATGT+GGG + chr5.4:70384656-70384675 MS.gene038184:intron 20.0%
!! TATTGATCAAAATCTTAATG+TGG + chr5.4:70384655-70384674 MS.gene038184:intron 20.0%
!! TGAAAAACTATATAGTGTTA+AGG - chr5.4:70384457-70384476 None:intergenic 20.0%
!! TTTGCTTATAATCAAATCTT+AGG + chr5.4:70385309-70385328 MS.gene038184:intron 20.0%
!!! GAAGTTTCTAACAAATTTTT+TGG - chr5.4:70384053-70384072 None:intergenic 20.0%
! AAGTTCAATACAATCTTAGT+GGG - chr5.4:70385356-70385375 None:intergenic 25.0%
! ACAAGAAGTTAAGCAATTAA+TGG + chr5.4:70385549-70385568 MS.gene038184:CDS 25.0%
! ACCAGTTTAAAAGATATTGT+TGG + chr5.4:70384719-70384738 MS.gene038184:CDS 25.0%
! AGAAATGAACACTTAAGATT+TGG - chr5.4:70384614-70384633 None:intergenic 25.0%
! CTTAATATGAAACTGAAACT+AGG + chr5.4:70384903-70384922 MS.gene038184:intron 25.0%
! GTTCATTTCTCTTAATCTAA+AGG + chr5.4:70384624-70384643 MS.gene038184:intron 25.0%
! TAAGTTCAATACAATCTTAG+TGG - chr5.4:70385357-70385376 None:intergenic 25.0%
! TCTTATTCAGAATAAATGGT+CGG - chr5.4:70384339-70384358 None:intergenic 25.0%
! TTATCAGAGAAAGAAATCAT+GGG + chr5.4:70385424-70385443 MS.gene038184:CDS 25.0%
! TTATTGTGAGGCAAAAAATA+TGG - chr5.4:70384316-70384335 None:intergenic 25.0%
!! AAAAAGTTTTTGTGAATTGG+AGG - chr5.4:70384249-70384268 None:intergenic 25.0%
!! ACCAACAATATCTTTTAAAC+TGG - chr5.4:70384723-70384742 None:intergenic 25.0%
!!! CTGATAAGATATTTTTTGAC+AGG + chr5.4:70384694-70384713 MS.gene038184:intron 25.0%
AACAACAAGATATGGGAAAT+AGG + chr5.4:70383842-70383861 MS.gene038184:intron 30.0%
AATTCATTAAGTGTTTGGCT+CGG - chr5.4:70383920-70383939 None:intergenic 30.0%
AGACATGAAATCAATTCAAG+AGG - chr5.4:70384882-70384901 None:intergenic 30.0%
AGTTCAATACAATCTTAGTG+GGG - chr5.4:70385355-70385374 None:intergenic 30.0%
ATTCAAGAAAGTTGCTCTAA+AGG + chr5.4:70385282-70385301 MS.gene038184:CDS 30.0%
ATTTCGATTACACCAATTGA+CGG - chr5.4:70385137-70385156 None:intergenic 30.0%
CATGTTATTCTCTGTTCAAT+CGG - chr5.4:70385768-70385787 None:intergenic 30.0%
CTTATCAGAGAAAGAAATCA+TGG + chr5.4:70385423-70385442 MS.gene038184:CDS 30.0%
GTAGTTGAACAACAAGATAT+GGG + chr5.4:70383835-70383854 MS.gene038184:intron 30.0%
TTAGAGCAACTTTCTTGAAT+TGG - chr5.4:70385282-70385301 None:intergenic 30.0%
TTTGTGTATGTGCAAATTAC+AGG + chr5.4:70385671-70385690 MS.gene038184:intron 30.0%
!!! TCATAGTTTTGTTTGACATC+TGG - chr5.4:70384589-70384608 None:intergenic 30.0%
AAAAGTCAACATGTCCTCTT+AGG - chr5.4:70384943-70384962 None:intergenic 35.0%
AATGTGGGCATAAGTTTCAT+GGG + chr5.4:70384671-70384690 MS.gene038184:intron 35.0%
ATAAATGGTCGGTTATTGTG+AGG - chr5.4:70384328-70384347 None:intergenic 35.0%
ATATTCAATGCCATCCTAAG+AGG + chr5.4:70384926-70384945 MS.gene038184:CDS 35.0%
ATGAATGTACGGTTATTGAG+AGG - chr5.4:70384377-70384396 None:intergenic 35.0%
ATTTCCTCAAAACATAGTGC+AGG + chr5.4:70383762-70383781 MS.gene038184:intron 35.0%
CAACTACCTTAATTGTTGTC+AGG - chr5.4:70383822-70383841 None:intergenic 35.0%
CTTGAGCTCTTCAATTGTAA+TGG - chr5.4:70385494-70385513 None:intergenic 35.0%
GATGTGTTGAAGAGGAAATA+CGG + chr5.4:70384764-70384783 MS.gene038184:CDS 35.0%
GGATTGAAGCAGATGTTTAA+GGG + chr5.4:70385445-70385464 MS.gene038184:CDS 35.0%
GGTAGTTGAACAACAAGATA+TGG + chr5.4:70383834-70383853 MS.gene038184:intron 35.0%
TAACCGAAAAAATCGAAGGA+GGG - chr5.4:70385591-70385610 None:intergenic 35.0%
TAATGTGGGCATAAGTTTCA+TGG + chr5.4:70384670-70384689 MS.gene038184:intron 35.0%
TATTTCCTCTTCAACACATC+AGG - chr5.4:70384764-70384783 None:intergenic 35.0%
TGAATGTACGGTTATTGAGA+GGG - chr5.4:70384376-70384395 None:intergenic 35.0%
TGTGAAAAATAGATCATCCG+TGG + chr5.4:70385176-70385195 MS.gene038184:intron 35.0%
TTTCGATTACACCAATTGAC+GGG - chr5.4:70385136-70385155 None:intergenic 35.0%
!! ATAGTGGAGAAGCTTCATTT+TGG - chr5.4:70385636-70385655 None:intergenic 35.0%
!! TTGACTTTTCTAGTGATCCA+TGG + chr5.4:70384954-70384973 MS.gene038184:CDS 35.0%
AATAGATCATCCGTGGATCA+AGG + chr5.4:70385183-70385202 MS.gene038184:intron 40.0%
ACAATTGAAGAGCTCAAGCA+AGG + chr5.4:70385496-70385515 MS.gene038184:CDS 40.0%
ACACTCCAAATGTCTACTTC+TGG - chr5.4:70384791-70384810 None:intergenic 40.0%
ACCTTAATTGTTGTCAGGCA+CGG - chr5.4:70383817-70383836 None:intergenic 40.0%
ATATGCTGTAATCCTCTGCT+TGG - chr5.4:70385035-70385054 None:intergenic 40.0%
ATCCTTTGCTGAAGGTGAAA+TGG - chr5.4:70384984-70385003 None:intergenic 40.0%
CAATTGAAGAGCTCAAGCAA+GGG + chr5.4:70385497-70385516 MS.gene038184:CDS 40.0%
CTTACAAGATCCTTTGCTGA+AGG - chr5.4:70384992-70385011 None:intergenic 40.0%
CTTCAGCAAAGGATCTTGTA+AGG + chr5.4:70384990-70385009 MS.gene038184:CDS 40.0%
GAAGCAGATGTTTAAGGGTA+TGG + chr5.4:70385450-70385469 MS.gene038184:CDS 40.0%
GAATGTACGGTTATTGAGAG+GGG - chr5.4:70384375-70384394 None:intergenic 40.0%
GCAGTAACCGAAAAAATCGA+AGG - chr5.4:70385595-70385614 None:intergenic 40.0%
GGGATTGAAGCAGATGTTTA+AGG + chr5.4:70385444-70385463 MS.gene038184:CDS 40.0%
GTAACCGAAAAAATCGAAGG+AGG - chr5.4:70385592-70385611 None:intergenic 40.0%
TATGCTGTAATCCTCTGCTT+GGG - chr5.4:70385034-70385053 None:intergenic 40.0%
TGTAATGGTTCCACTGTTGT+CGG - chr5.4:70385479-70385498 None:intergenic 40.0%
TTCGATTACACCAATTGACG+GGG - chr5.4:70385135-70385154 None:intergenic 40.0%
TTGACAATGCAGTGCTCAAT+AGG + chr5.4:70385233-70385252 MS.gene038184:CDS 40.0%
TTTGCTGAAGGTGAAATGGA+GGG - chr5.4:70384980-70384999 None:intergenic 40.0%
!!! CGATTTTTTCGGTTACTGCA+TGG + chr5.4:70385596-70385615 MS.gene038184:intron 40.0%
!!! TCTCCCTCCTTCGATTTTTT+CGG + chr5.4:70385585-70385604 MS.gene038184:intron 40.0%
AAATTACAGGCAGACGCTGA+TGG + chr5.4:70385684-70385703 MS.gene038184:intron 45.0%
AAGCAAGGGCTTGCAAAACA+AGG + chr5.4:70385511-70385530 MS.gene038184:CDS 45.0%
ACGGACCAGAAGTAGACATT+TGG + chr5.4:70384783-70384802 MS.gene038184:CDS 45.0%
CTCCATTTCACCTTCAGCAA+AGG + chr5.4:70384979-70384998 MS.gene038184:CDS 45.0%
CTTTGCTGAAGGTGAAATGG+AGG - chr5.4:70384981-70385000 None:intergenic 45.0%
GTCAACATGTCCTCTTAGGA+TGG - chr5.4:70384939-70384958 None:intergenic 45.0%
TCCGTGCCTGACAACAATTA+AGG + chr5.4:70383813-70383832 MS.gene038184:intron 45.0%
TCGATTACACCAATTGACGG+GGG - chr5.4:70385134-70385153 None:intergenic 45.0%
TGAATTCAGATCCCAAGCAG+AGG + chr5.4:70385020-70385039 MS.gene038184:CDS 45.0%
TTGCACCTGATGTGTTGAAG+AGG + chr5.4:70384756-70384775 MS.gene038184:CDS 45.0%
! GCATTGTCAAGAGGTGTATC+AGG - chr5.4:70385223-70385242 None:intergenic 45.0%
! TGTGCCTGCACTATGTTTTG+AGG - chr5.4:70383769-70383788 None:intergenic 45.0%
! TTGAGCACTGCATTGTCAAG+AGG - chr5.4:70385232-70385251 None:intergenic 45.0%
!! ATAAGAATATATAAAATATA+AGG - chr5.4:70384111-70384130 None:intergenic 5.0%
CATCCGTGGATCAAGGAAGA+CGG + chr5.4:70385190-70385209 MS.gene038184:CDS 50.0%
GATCTATGTAGCCCACTGTG+TGG - chr5.4:70383795-70383814 None:intergenic 50.0%
GGGCTTGCAAAACAAGGAAC+TGG + chr5.4:70385517-70385536 MS.gene038184:CDS 50.0%
TCTCCGTCTTCCTTGATCCA+CGG - chr5.4:70385196-70385215 None:intergenic 50.0%
TTGACTTCACCCCCGTCAAT+TGG + chr5.4:70385122-70385141 MS.gene038184:intron 50.0%
CAGGCACACATCCACACAGT+GGG + chr5.4:70383781-70383800 MS.gene038184:intron 55.0%
CAGGCAGACGCTGATGGTAA+TGG + chr5.4:70385690-70385709 MS.gene038184:intron 55.0%
GAAGGTGAAATGGAGGGCCA+TGG - chr5.4:70384974-70384993 None:intergenic 55.0%
GGTATGGACACCGACAACAG+TGG + chr5.4:70385466-70385485 MS.gene038184:CDS 55.0%
GCAGGCACACATCCACACAG+TGG + chr5.4:70383780-70383799 MS.gene038184:intron 60.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 70383741 70385815 70383741 ID=MS.gene038184
chr5.4 mRNA 70383741 70385815 70383741 ID=MS.gene038184.t1;Parent=MS.gene038184
chr5.4 exon 70383741 70383743 70383741 ID=MS.gene038184.t1.exon1;Parent=MS.gene038184.t1
chr5.4 CDS 70383741 70383743 70383741 ID=cds.MS.gene038184.t1;Parent=MS.gene038184.t1
chr5.4 exon 70384716 70384819 70384716 ID=MS.gene038184.t1.exon2;Parent=MS.gene038184.t1
chr5.4 CDS 70384716 70384819 70384716 ID=cds.MS.gene038184.t1;Parent=MS.gene038184.t1
chr5.4 exon 70384925 70385064 70384925 ID=MS.gene038184.t1.exon3;Parent=MS.gene038184.t1
chr5.4 CDS 70384925 70385064 70384925 ID=cds.MS.gene038184.t1;Parent=MS.gene038184.t1
chr5.4 exon 70385188 70385303 70385188 ID=MS.gene038184.t1.exon4;Parent=MS.gene038184.t1
chr5.4 CDS 70385188 70385303 70385188 ID=cds.MS.gene038184.t1;Parent=MS.gene038184.t1
chr5.4 exon 70385409 70385576 70385409 ID=MS.gene038184.t1.exon5;Parent=MS.gene038184.t1
chr5.4 CDS 70385409 70385576 70385409 ID=cds.MS.gene038184.t1;Parent=MS.gene038184.t1
chr5.4 exon 70385693 70385815 70385693 ID=MS.gene038184.t1.exon6;Parent=MS.gene038184.t1
chr5.4 CDS 70385693 70385815 70385693 ID=cds.MS.gene038184.t1;Parent=MS.gene038184.t1
Gene Sequence

>MS.gene038184

ATGGTATACAATCACAAAAAAATTTCCTCAAAACATAGTGCAGGCACACATCCACACAGTGGGCTACATAGATCCGTGCCTGACAACAATTAAGGTAGTTGAACAACAAGATATGGGAAATAGGTTTCGAATTAAATTTCAATTACAATCTCTTTTTTTATTTTATAGAGGATTCACCGAGCCAAACACTTAATGAATTAAATTACCTAACTTGGTTTATTTTAATTTAAAATATTTTAAAATTATATCTCATATATAATTTTTTTTAAGGAATCTTATATATAAAAGTTGTTAAATCTATTAAGCAAGCCAAAAAATTTGTTAGAAACTTCCTAATTTTTGCCTTTCTTTTTTGTTGAAAAAATGACCTTATATTTTATATATTCTTATCGACGACATCTATTATCTATCTATCTATCTACTTCTTCTACCTATTATCTATATTAAAGTAAGGTTATTCTTATTACAACAATTTACATATGACATCTCTTATGCATCTAACTTTCCTCCAATTCACAAAAACTTTTTTTTCACACATAAATATTGATAATTAGAATAATACTTTTTTCGATCCATATTTTTTGCCTCACAATAACCGACCATTTATTCTGAATAAGATATACACGATTTTCCCCTCTCAATAACCGTACATTCATTCAAAAAATATTTATAACTCGGTATAAGATTTCATAGTTTTACATATTATATATTATCCTTAACACTATATAGTTTTTCATATTATAACTTATCTTATTATTTTCCTAAAAAAAACTATTATTCTAACTAGCGGAAAAATAGTGCATTGTATATGTATATACGTGTGCGTGAGACAGCATTCGTTGAAACCAGATGTCAAACAAAACTATGACACCAAATCTTAAGTGTTCATTTCTCTTAATCTAAAGGTCAATAATTATTGATCAAAATCTTAATGTGGGCATAAGTTTCATGGGCTGATAAGATATTTTTTGACAGGTGACCAGTTTAAAAGATATTGTTGGTAGTGCATATTACATTGCACCTGATGTGTTGAAGAGGAAATACGGACCAGAAGTAGACATTTGGAGTGTTAGTGTCATGTTTATATTCATTCACTCACTTAATTTTTAATCTACTTCTTAATAGAACAAATAGCTTTCCTCTTGAATTGATTTCATGTCTGCTTAATATGAAACTGAAACTAGGATATTCAATGCCATCCTAAGAGGACATGTTGACTTTTCTAGTGATCCATGGCCCTCCATTTCACCTTCAGCAAAGGATCTTGTAAGGAAAATGTTGAATTCAGATCCCAAGCAGAGGATTACAGCATATGAAGTTCTGAGTAAGTATATGCACTGCTTGAATTCAACTATTATGTTTAGATGGTTCACAAATTAATTTGACTTCACCCCCGTCAATTGGTGTAATCGAAATTCTAACGTAGTACTTATTTTGTGAAAAATAGATCATCCGTGGATCAAGGAAGACGGAGAAGCACCTGATACACCTCTTGACAATGCAGTGCTCAATAGGCTCAAACAGTTTAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAAGGTAATTTTGCTTATAATCAAATCTTAGGTGTAATTCATTTTACTATTTCCCCACTAAGATTGTATTGAACTTAACAGTATACTAATAAAATTTACATATGGAAAGGTTATTGCTAGCTGCTTATCAGAGAAAGAAATCATGGGATTGAAGCAGATGTTTAAGGGTATGGACACCGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGGCTTGCAAAACAAGGAACTGGACTGAGTGAACAAGAAGTTAAGCAATTAATGGAAGCTGTAAGTTATCTCCCTCCTTCGATTTTTTCGGTTACTGCATGGCAAAATAACTTCTGCCAAAATGAAGCTTCTCCACTATGATTACTTAATGATTTTTGTGTATGTGCAAATTACAGGCAGACGCTGATGGTAATGGAATCATTGACTACGACGAGTGTAGAGTTCATCACAGCAACTATGCACATGAACCGATTGAACAGAGAATAACATGTTTATACTGCCTTTCAATACTTCGATAA
Protein sequence

>MS.gene038184.t1

MVTSLKDIVGSAYYIAPDVLKRKYGPEVDIWSVSVMIFNAILRGHVDFSSDPWPSISPSAKDLVRKMLNSDPKQRITAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMNQFKKVALKVIASCLSEKEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTGLSEQEVKQLMEAADADGNGIIDYDECRVHHSNYAHEPIEQRITCLYCLSILR