Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038203.t1 | AET00229.2 | 82.1 | 375 | 59 | 3 | 64 | 436 | 49 | 417 | 9.20E-80 | 307.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038203.t1 | Q94CK9 | 74.2 | 66 | 17 | 0 | 371 | 436 | 220 | 285 | 3.0e-23 | 111.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038203.t1 | G7K357 | 82.1 | 375 | 59 | 3 | 64 | 436 | 49 | 417 | 6.6e-80 | 307.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038203.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038203.t1 | MTR_5g089750 | 90.812 | 468 | 29 | 5 | 27 | 486 | 6 | 467 | 0.0 | 619 |
| MS.gene038203.t1 | MTR_3g014660 | 41.718 | 326 | 148 | 9 | 152 | 470 | 39 | 329 | 1.43e-66 | 217 |
| MS.gene038203.t1 | MTR_8g039110 | 38.507 | 335 | 159 | 12 | 139 | 454 | 8 | 314 | 8.21e-60 | 199 |
| MS.gene038203.t1 | MTR_8g076620 | 45.213 | 188 | 71 | 5 | 238 | 422 | 94 | 252 | 2.42e-42 | 153 |
| MS.gene038203.t1 | MTR_5g021130 | 42.411 | 224 | 109 | 6 | 261 | 480 | 93 | 300 | 1.92e-40 | 148 |
| MS.gene038203.t1 | MTR_3g112510 | 41.622 | 185 | 90 | 4 | 258 | 440 | 76 | 244 | 1.97e-34 | 131 |
| MS.gene038203.t1 | MTR_4g071110 | 39.216 | 153 | 61 | 3 | 268 | 420 | 17 | 137 | 1.56e-27 | 111 |
| MS.gene038203.t1 | MTR_0363s0040 | 33.962 | 212 | 107 | 8 | 139 | 342 | 8 | 194 | 1.69e-25 | 105 |
| MS.gene038203.t1 | MTR_1g023230 | 86.667 | 45 | 6 | 0 | 268 | 312 | 122 | 166 | 3.21e-20 | 90.5 |
| MS.gene038203.t1 | MTR_0105s0070 | 63.636 | 33 | 12 | 0 | 270 | 302 | 44 | 76 | 7.99e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038203.t1 | AT5G12330 | 48.837 | 430 | 148 | 18 | 68 | 465 | 6 | 395 | 1.28e-97 | 300 |
| MS.gene038203.t1 | AT5G12330 | 49.555 | 337 | 120 | 12 | 142 | 465 | 9 | 308 | 7.42e-82 | 256 |
| MS.gene038203.t1 | AT5G12330 | 49.555 | 337 | 120 | 12 | 142 | 465 | 9 | 308 | 7.42e-82 | 256 |
| MS.gene038203.t1 | AT5G66350 | 50.633 | 158 | 64 | 3 | 268 | 424 | 120 | 264 | 5.09e-44 | 158 |
| MS.gene038203.t1 | AT5G66350 | 50.633 | 158 | 64 | 3 | 268 | 424 | 120 | 264 | 6.93e-44 | 157 |
| MS.gene038203.t1 | AT5G66350 | 50.633 | 158 | 64 | 3 | 268 | 424 | 120 | 264 | 8.70e-44 | 157 |
| MS.gene038203.t1 | AT1G75520 | 41.350 | 237 | 93 | 10 | 249 | 461 | 110 | 324 | 6.32e-43 | 155 |
| MS.gene038203.t1 | AT4G36260 | 41.841 | 239 | 103 | 6 | 191 | 422 | 37 | 246 | 1.65e-41 | 151 |
| MS.gene038203.t1 | AT1G19790 | 37.500 | 264 | 108 | 8 | 208 | 420 | 12 | 269 | 1.74e-41 | 151 |
| MS.gene038203.t1 | AT1G19790 | 37.500 | 264 | 108 | 8 | 208 | 420 | 12 | 269 | 1.74e-41 | 151 |
| MS.gene038203.t1 | AT3G51060 | 41.202 | 233 | 97 | 7 | 200 | 418 | 76 | 282 | 2.91e-41 | 152 |
| MS.gene038203.t1 | AT2G18120 | 41.989 | 181 | 83 | 2 | 246 | 426 | 50 | 208 | 6.76e-38 | 138 |
| MS.gene038203.t1 | AT2G18120 | 44.048 | 168 | 74 | 2 | 259 | 426 | 63 | 210 | 1.45e-37 | 137 |
| MS.gene038203.t1 | AT3G54430 | 42.941 | 170 | 72 | 3 | 264 | 432 | 37 | 182 | 3.13e-37 | 135 |
| MS.gene038203.t1 | AT2G21400 | 40.994 | 161 | 68 | 3 | 268 | 426 | 10 | 145 | 2.30e-34 | 128 |
| MS.gene038203.t1 | AT2G21400 | 40.994 | 161 | 68 | 3 | 268 | 426 | 9 | 144 | 2.72e-34 | 127 |
| MS.gene038203.t1 | AT5G12330 | 44.856 | 243 | 89 | 10 | 140 | 366 | 1 | 214 | 8.73e-34 | 127 |
| MS.gene038203.t1 | AT2G21400 | 40.000 | 160 | 56 | 2 | 268 | 426 | 10 | 130 | 3.55e-33 | 124 |
| MS.gene038203.t1 | AT2G21400 | 40.000 | 160 | 56 | 2 | 268 | 426 | 9 | 129 | 4.19e-33 | 124 |
| MS.gene038203.t1 | AT5G33210 | 72.222 | 54 | 15 | 0 | 266 | 319 | 15 | 68 | 5.50e-21 | 88.2 |
| MS.gene038203.t1 | AT5G33210 | 72.222 | 54 | 15 | 0 | 266 | 319 | 50 | 103 | 1.46e-20 | 89.4 |
Find 124 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTACTACTACTGTCAATT+TGG | 0.208653 | 5.4:+70829683 | None:intergenic |
| CATGGCACTGGTGGGTTAAC+TGG | 0.215140 | 5.4:-70828846 | MS.gene038203:CDS |
| TCATCTAGGTCCATTAATTA+TGG | 0.227585 | 5.4:-70829203 | MS.gene038203:CDS |
| AGGAGATTGCCTTCAGATTC+AGG | 0.251476 | 5.4:-70829368 | MS.gene038203:CDS |
| GGTGGAAGCTCCGGCGTTTC+CGG | 0.252237 | 5.4:+70829250 | None:intergenic |
| GGTTCTAGTGGTTCAACTTC+TGG | 0.271027 | 5.4:-70828615 | MS.gene038203:CDS |
| TAGTACAAGTCCAACAAATT+TGG | 0.276866 | 5.4:-70828871 | MS.gene038203:CDS |
| TTACTTGGAGGTTCAGCTTA+TGG | 0.290172 | 5.4:-70827580 | MS.gene038203:CDS |
| CCGCCACCGCTCTCGGTGTC+GGG | 0.292941 | 5.4:-70829079 | MS.gene038203:CDS |
| ACCAACAAGGAATTCAGTTT+TGG | 0.307252 | 5.4:-70828992 | MS.gene038203:CDS |
| TGATCATGGTGTTGAGAATA+GGG | 0.324275 | 5.4:-70827752 | MS.gene038203:CDS |
| CATCTCAGGTCCATAATTAA+TGG | 0.328906 | 5.4:+70829193 | None:intergenic |
| AAACCGAGTGAAAGATCTTC+TGG | 0.334650 | 5.4:+70829290 | None:intergenic |
| AGCTCCGGCGTTTCCGGCGG+TGG | 0.340870 | 5.4:+70829256 | None:intergenic |
| AACCTTTCTGAGCTTCATTT+AGG | 0.352612 | 5.4:-70827718 | MS.gene038203:CDS |
| GCTTCTGCTGCTGTTGCTGT+TGG | 0.363663 | 5.4:+70829645 | None:intergenic |
| GCCAAAACTGAATTCCTTGT+TGG | 0.364262 | 5.4:+70828991 | None:intergenic |
| ATGATCATGGTGTTGAGAAT+AGG | 0.379627 | 5.4:-70827753 | MS.gene038203:CDS |
| CTACTCATGTTAAGAGTACT+TGG | 0.387799 | 5.4:-70828704 | MS.gene038203:CDS |
| TGAGAATTAACAAACCTTGA+TGG | 0.401434 | 5.4:+70828499 | None:intergenic |
| GCGACAACGACGGTGGTTGC+TGG | 0.403885 | 5.4:-70828642 | MS.gene038203:CDS |
| CCCGACACCGAGAGCGGTGG+CGG | 0.404701 | 5.4:+70829079 | None:intergenic |
| AGAAGGATTGTAGTAATAGA+AGG | 0.407133 | 5.4:-70828764 | MS.gene038203:CDS |
| AGTCCAACAAATTTGGTTCA+TGG | 0.408703 | 5.4:-70828864 | MS.gene038203:CDS |
| GAGGTAGTATCAAAGCTTCT+AGG | 0.414831 | 5.4:+70828525 | None:intergenic |
| ACTGGTGGGTTAACTGGTTC+TGG | 0.416853 | 5.4:-70828840 | MS.gene038203:CDS |
| AACGGTGGTGCTAATAGAAA+TGG | 0.417236 | 5.4:-70827676 | MS.gene038203:CDS |
| CTTAACCCCGCCACCGCTCT+CGG | 0.417771 | 5.4:-70829086 | MS.gene038203:CDS |
| CCCGCCACCGCTCTCGGTGT+CGG | 0.421375 | 5.4:-70829080 | MS.gene038203:CDS |
| GTGCCATGAACCAAATTTGT+TGG | 0.422067 | 5.4:+70828861 | None:intergenic |
| CTTTCACTCGGTTTCAATGC+GGG | 0.422098 | 5.4:-70829281 | MS.gene038203:CDS |
| TACTACAATCCTTCTTCGCT+TGG | 0.423666 | 5.4:+70828772 | None:intergenic |
| AGTGGTGGTGGAGGATTACT+TGG | 0.426078 | 5.4:-70827595 | MS.gene038203:CDS |
| ACAAATTTGGTTCATGGCAC+TGG | 0.434452 | 5.4:-70828858 | MS.gene038203:CDS |
| GGTGGGTCCGGTGGAAGCTC+CGG | 0.434590 | 5.4:+70829241 | None:intergenic |
| TTCAATGCGGGTCCCACCGC+CGG | 0.436323 | 5.4:-70829269 | MS.gene038203:CDS |
| ATATAATCCGGTGGTGGGTC+CGG | 0.460177 | 5.4:+70829229 | None:intergenic |
| TGTTGTTCCTCCACCACTAC+TGG | 0.460746 | 5.4:+70828815 | None:intergenic |
| TCTGAGCTTCATTTAGGTGG+TGG | 0.469113 | 5.4:-70827712 | MS.gene038203:CDS |
| CATTAATTATGGACCTGAGA+TGG | 0.472294 | 5.4:-70829192 | MS.gene038203:CDS |
| AAATGAAGCTCAGAAAGGTT+AGG | 0.477510 | 5.4:+70827721 | None:intergenic |
| GGTTTCAAAGATTCGATGCC+GGG | 0.480661 | 5.4:-70827898 | MS.gene038203:CDS |
| GATACTACCTCTAGCCATCA+AGG | 0.481688 | 5.4:-70828513 | MS.gene038203:intron |
| CCGGATTATATAATTCATCT+AGG | 0.484439 | 5.4:-70829217 | MS.gene038203:CDS |
| GTTTGTGAAGCAATAAGTCT+AGG | 0.489243 | 5.4:+70828582 | None:intergenic |
| GTCTTCTTCATCACCAATGA+TGG | 0.489923 | 5.4:-70827650 | MS.gene038203:CDS |
| TTGTGGAAACCAAGCGAAGA+AGG | 0.497994 | 5.4:-70828781 | MS.gene038203:CDS |
| GGGTACCGGCTGCTAGAAGA+AGG | 0.498642 | 5.4:-70828683 | MS.gene038203:CDS |
| CAAGTACTCTTAACATGAGT+AGG | 0.499272 | 5.4:+70828705 | None:intergenic |
| TCATGAGAAGGATCCATCAT+TGG | 0.499688 | 5.4:+70827637 | None:intergenic |
| GAGCTGCTTCATGATTGTTA+TGG | 0.501220 | 5.4:+70829129 | None:intergenic |
| CTTCATGATTGTTATGGTGA+TGG | 0.501506 | 5.4:+70829135 | None:intergenic |
| CTTTCTGAGCTTCATTTAGG+TGG | 0.503901 | 5.4:-70827715 | MS.gene038203:CDS |
| GTTGCTGGTGGTGGTTCTAG+TGG | 0.506006 | 5.4:-70828627 | MS.gene038203:CDS |
| GAGCTTCATTTAGGTGGTGG+TGG | 0.512059 | 5.4:-70827709 | MS.gene038203:CDS |
| CCGACACCGAGAGCGGTGGC+GGG | 0.513284 | 5.4:+70829080 | None:intergenic |
| CCTAGATGAATTATATAATC+CGG | 0.516389 | 5.4:+70829217 | None:intergenic |
| GGTCCCACCGCCGGAAACGC+CGG | 0.524097 | 5.4:-70829260 | MS.gene038203:CDS |
| GCTCCGGCGTTTCCGGCGGT+GGG | 0.525360 | 5.4:+70829257 | None:intergenic |
| ACGACGGTGGTTGCTGGTGG+TGG | 0.527037 | 5.4:-70828636 | MS.gene038203:CDS |
| TGAATTATATAATCCGGTGG+TGG | 0.528238 | 5.4:+70829223 | None:intergenic |
| TTCTGGAGCAGCAGCACGAA+GGG | 0.528350 | 5.4:+70829307 | None:intergenic |
| CTTCATTTAGGTGGTGGTGG+TGG | 0.530531 | 5.4:-70827706 | MS.gene038203:CDS |
| ATTAATTATGGACCTGAGAT+GGG | 0.532955 | 5.4:-70829191 | MS.gene038203:CDS |
| GCAGCTTCAAGTGGTGGTGG+AGG | 0.534400 | 5.4:-70827604 | MS.gene038203:CDS |
| CGTTCCCTTCTTCTAGCAGC+CGG | 0.537437 | 5.4:+70828678 | None:intergenic |
| CATGGAGAAGCTGTAAGTAA+AGG | 0.540555 | 5.4:+70829050 | None:intergenic |
| GCAGCAGCTTCAAGTGGTGG+TGG | 0.540984 | 5.4:-70827607 | MS.gene038203:CDS |
| ACTGGTTCTGGTACCAGTAG+TGG | 0.546183 | 5.4:-70828828 | MS.gene038203:CDS |
| GCTTCCACCGGACCCACCAC+CGG | 0.548718 | 5.4:-70829236 | MS.gene038203:CDS |
| AGAACTTGTTGTAAAAGTAG+AGG | 0.550532 | 5.4:-70828738 | MS.gene038203:CDS |
| CTAACACATTTGAATACTGC+CGG | 0.555675 | 5.4:+70827862 | None:intergenic |
| ACAACAAACATACCCATCTC+AGG | 0.556410 | 5.4:+70829179 | None:intergenic |
| ACAACAACGTGTCAAGATTG+TGG | 0.558898 | 5.4:-70828798 | MS.gene038203:CDS |
| TGTTAAGAGTACTTGGGTAC+CGG | 0.559268 | 5.4:-70828697 | MS.gene038203:CDS |
| CACCTAAATGAAGCTCAGAA+AGG | 0.565023 | 5.4:+70827716 | None:intergenic |
| AGGTTTCAAAGATTCGATGC+CGG | 0.567576 | 5.4:-70827899 | MS.gene038203:CDS |
| GCTCCAGAAGATCTTTCACT+CGG | 0.567750 | 5.4:-70829293 | MS.gene038203:CDS |
| GGTGGTGGAGGATTACTTGG+AGG | 0.570387 | 5.4:-70827592 | MS.gene038203:CDS |
| GAATTATATAATCCGGTGGT+GGG | 0.570532 | 5.4:+70829224 | None:intergenic |
| CGCCACCGCTCTCGGTGTCG+GGG | 0.570886 | 5.4:-70829078 | MS.gene038203:CDS |
| AGCAACCACCGTCGTTGTCG+CGG | 0.571590 | 5.4:+70828644 | None:intergenic |
| GAAGGAACAAGTTAATCTGA+TGG | 0.573829 | 5.4:+70829581 | None:intergenic |
| TGCTGTTGGAGCTGTAATTG+TGG | 0.576451 | 5.4:+70829659 | None:intergenic |
| TATCAAGCTGTAGTGAAGAT+TGG | 0.579339 | 5.4:-70827802 | MS.gene038203:CDS |
| ATATAGTTGTGGCTACTACA+AGG | 0.581940 | 5.4:-70829388 | MS.gene038203:intron |
| TTCTTCGACCGCGACAACGA+CGG | 0.583043 | 5.4:-70828652 | MS.gene038203:CDS |
| AATTTGGTTCATGGCACTGG+TGG | 0.583110 | 5.4:-70828855 | MS.gene038203:CDS |
| GGAAACGCCGGAGCTTCCAC+CGG | 0.586967 | 5.4:-70829248 | MS.gene038203:CDS |
| TAATCCGGTGGTGGGTCCGG+TGG | 0.587770 | 5.4:+70829232 | None:intergenic |
| GCCGGGTCAAGTACGTGCAC+CGG | 0.587973 | 5.4:-70827881 | MS.gene038203:CDS |
| AAAGAAAACCTTTGAAAACA+TGG | 0.590040 | 5.4:+70827776 | None:intergenic |
| TCTGGTACCAGTAGTGGTGG+AGG | 0.592565 | 5.4:-70828822 | MS.gene038203:CDS |
| CGACACCGAGAGCGGTGGCG+GGG | 0.592680 | 5.4:+70829081 | None:intergenic |
| GCCGGTGCACGTACTTGACC+CGG | 0.597416 | 5.4:+70827880 | None:intergenic |
| GGAAGCTCCGGCGTTTCCGG+CGG | 0.598478 | 5.4:+70829253 | None:intergenic |
| AGTATCAAAGCTTCTAGGAG+GGG | 0.599007 | 5.4:+70828530 | None:intergenic |
| AAGTACTCTTAACATGAGTA+GGG | 0.604249 | 5.4:+70828706 | None:intergenic |
| CAAGCTGTAGTGAAGATTGG+TGG | 0.605202 | 5.4:-70827799 | MS.gene038203:CDS |
| ATTTGGTTCATGGCACTGGT+GGG | 0.608844 | 5.4:-70828854 | MS.gene038203:CDS |
| TATGCAGCAGCTTCAAGTGG+TGG | 0.610824 | 5.4:-70827610 | MS.gene038203:CDS |
| GTAGTATCAAAGCTTCTAGG+AGG | 0.611169 | 5.4:+70828528 | None:intergenic |
| TGATGAGAGAAGAAAATGGT+CGG | 0.611312 | 5.4:-70829869 | None:intergenic |
| GCAAAAGCTCCTGAATCTGA+AGG | 0.612169 | 5.4:+70829359 | None:intergenic |
| AGAGTGACATCAGTTGATGA+TGG | 0.613144 | 5.4:-70827841 | MS.gene038203:CDS |
| TAGTATCAAAGCTTCTAGGA+GGG | 0.613507 | 5.4:+70828529 | None:intergenic |
| GGTTCTGGTACCAGTAGTGG+TGG | 0.613955 | 5.4:-70828825 | MS.gene038203:CDS |
| TAACAAACCTTGATGGCTAG+AGG | 0.619709 | 5.4:+70828506 | None:intergenic |
| TTCGACCGCGACAACGACGG+TGG | 0.620852 | 5.4:-70828649 | MS.gene038203:CDS |
| CTTCTGGAGCAGCAGCACGA+AGG | 0.625376 | 5.4:+70829306 | None:intergenic |
| TACTCATGTTAAGAGTACTT+GGG | 0.637418 | 5.4:-70828703 | MS.gene038203:CDS |
| GCTGCATAAACATCATGAGA+AGG | 0.637740 | 5.4:+70827625 | None:intergenic |
| TGATGGTGATGAAAAGAAGA+TGG | 0.645211 | 5.4:+70829152 | None:intergenic |
| GGTACCGGCTGCTAGAAGAA+GGG | 0.655941 | 5.4:-70828682 | MS.gene038203:CDS |
| AACCCCGACACCGAGAGCGG+TGG | 0.656167 | 5.4:+70829076 | None:intergenic |
| GTGGCGGGGTTAAGAGAGTG+AGG | 0.668996 | 5.4:+70829095 | None:intergenic |
| ACAACGACGGTGGTTGCTGG+TGG | 0.669044 | 5.4:-70828639 | MS.gene038203:CDS |
| TCTTTCACTCGGTTTCAATG+CGG | 0.669874 | 5.4:-70829282 | MS.gene038203:CDS |
| GTTTATGCAGCAGCTTCAAG+TGG | 0.670690 | 5.4:-70827613 | MS.gene038203:CDS |
| AGATGAATTATATAATCCGG+TGG | 0.675126 | 5.4:+70829220 | None:intergenic |
| TATAACCCCGACACCGAGAG+CGG | 0.681070 | 5.4:+70829073 | None:intergenic |
| GGTGGTGGTGGTAATAACAA+CGG | 0.726103 | 5.4:-70827694 | MS.gene038203:CDS |
| AACAATAGAAGAAACCAACA+AGG | 0.735803 | 5.4:-70829005 | MS.gene038203:CDS |
| GGTGGTGGTAATAACAACGG+TGG | 0.740902 | 5.4:-70827691 | MS.gene038203:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAGTTAGTTTAATTTTTTT+GGG | - | chr5.4:70829432-70829451 | MS.gene038203:intron | 10.0% |
| !!! | TTTAGTTAGTTTAATTTTTT+TGG | - | chr5.4:70829431-70829450 | MS.gene038203:intron | 10.0% |
| !! | AACCTAAAATTATATTATGA+AGG | + | chr5.4:70828960-70828979 | None:intergenic | 15.0% |
| !! | TAAAAATTAGTTAAACTAGA+TGG | + | chr5.4:70829219-70829238 | None:intergenic | 15.0% |
| !! | TAGAAAAATAGAAATAGAAA+AGG | - | chr5.4:70827581-70827600 | MS.gene038203:CDS | 15.0% |
| !!! | TAGTTAGTTTAATTTTTTTG+GGG | - | chr5.4:70829433-70829452 | MS.gene038203:intron | 15.0% |
| !!! | TTCCTTCATAATATAATTTT+AGG | - | chr5.4:70828955-70828974 | MS.gene038203:CDS | 15.0% |
| !! | AAATAAAAATAGTGCAAGTT+TGG | - | chr5.4:70828998-70829017 | MS.gene038203:CDS | 20.0% |
| !! | ATATATGTATGTATGTAATG+TGG | + | chr5.4:70827951-70827970 | None:intergenic | 20.0% |
| !! | TATATGTATGTATGTAATGT+GGG | + | chr5.4:70827950-70827969 | None:intergenic | 20.0% |
| !!! | ACTATATGTTTTTTGATGTA+TGG | + | chr5.4:70828017-70828036 | None:intergenic | 20.0% |
| !!! | TTTTGTTGATAAAATCACAA+TGG | - | chr5.4:70829071-70829090 | MS.gene038203:CDS | 20.0% |
| ! | ATATGTATGTATGTAATGTG+GGG | + | chr5.4:70827949-70827968 | None:intergenic | 25.0% |
| ! | CACTATTTGAAAAAACAACA+AGG | - | chr5.4:70828509-70828528 | MS.gene038203:intron | 25.0% |
| ! | CATCAAAAAACATATAGTTG+TGG | - | chr5.4:70828019-70828038 | MS.gene038203:intron | 25.0% |
| ! | CCTAGATGAATTATATAATC+CGG | + | chr5.4:70828204-70828223 | None:intergenic | 25.0% |
| !! | AAAGAAAACCTTTGAAAACA+TGG | + | chr5.4:70829645-70829664 | None:intergenic | 25.0% |
| !! | AAAGGTTTTCTTTATGATCA+TGG | - | chr5.4:70829652-70829671 | MS.gene038203:CDS | 25.0% |
| !!! | ATGTTTTCATTTTCAAGACA+TGG | + | chr5.4:70828389-70828408 | None:intergenic | 25.0% |
| !!! | ATTGTTTCTGTTTATATGTG+TGG | + | chr5.4:70827870-70827889 | None:intergenic | 25.0% |
| !!! | TTTTTCAAATAGTGTGAATG+TGG | + | chr5.4:70828503-70828522 | None:intergenic | 25.0% |
| AACAATAGAAGAAACCAACA+AGG | - | chr5.4:70828413-70828432 | MS.gene038203:intron | 30.0% | |
| AACTATAAACTCTGCACAAT+TGG | + | chr5.4:70829104-70829123 | None:intergenic | 30.0% | |
| AAGTACTCTTAACATGAGTA+GGG | + | chr5.4:70828715-70828734 | None:intergenic | 30.0% | |
| AGAAGGATTGTAGTAATAGA+AGG | - | chr5.4:70828654-70828673 | MS.gene038203:CDS | 30.0% | |
| AGATGAATTATATAATCCGG+TGG | + | chr5.4:70828201-70828220 | None:intergenic | 30.0% | |
| ATTAATTATGGACCTGAGAT+GGG | - | chr5.4:70828227-70828246 | MS.gene038203:intron | 30.0% | |
| CCGGATTATATAATTCATCT+AGG | - | chr5.4:70828201-70828220 | MS.gene038203:intron | 30.0% | |
| GTAGCTAGTGAGAAAATTAA+TGG | + | chr5.4:70829165-70829184 | None:intergenic | 30.0% | |
| TACTACTACTACTGTCAATT+TGG | + | chr5.4:70827738-70827757 | None:intergenic | 30.0% | |
| TAGTACAAGTCCAACAAATT+TGG | - | chr5.4:70828547-70828566 | MS.gene038203:CDS | 30.0% | |
| TCATCTAGGTCCATTAATTA+TGG | - | chr5.4:70828215-70828234 | MS.gene038203:intron | 30.0% | |
| TGAGAATTAACAAACCTTGA+TGG | + | chr5.4:70828922-70828941 | None:intergenic | 30.0% | |
| ! | ATTTTCTCACTAGCTACATA+AGG | - | chr5.4:70829168-70829187 | MS.gene038203:CDS | 30.0% |
| ! | TAGATGGTTGATCTTTTCAT+TGG | + | chr5.4:70829203-70829222 | None:intergenic | 30.0% |
| !! | AGAAAATTAATGGACTAGTG+TGG | + | chr5.4:70829155-70829174 | None:intergenic | 30.0% |
| !! | AGAACTTGTTGTAAAAGTAG+AGG | - | chr5.4:70828680-70828699 | MS.gene038203:CDS | 30.0% |
| !! | GTTGTTTTCTGATGATTTTC+TGG | + | chr5.4:70827807-70827826 | None:intergenic | 30.0% |
| !! | TACTCATGTTAAGAGTACTT+GGG | - | chr5.4:70828715-70828734 | MS.gene038203:CDS | 30.0% |
| AAATGAAGCTCAGAAAGGTT+AGG | + | chr5.4:70829700-70829719 | None:intergenic | 35.0% | |
| AACCTTTCTGAGCTTCATTT+AGG | - | chr5.4:70829700-70829719 | MS.gene038203:intron | 35.0% | |
| ATATAGTTGTGGCTACTACA+AGG | - | chr5.4:70828030-70828049 | MS.gene038203:intron | 35.0% | |
| CAAGTACTCTTAACATGAGT+AGG | + | chr5.4:70828716-70828735 | None:intergenic | 35.0% | |
| CATCTCAGGTCCATAATTAA+TGG | + | chr5.4:70828228-70828247 | None:intergenic | 35.0% | |
| CATTAATTATGGACCTGAGA+TGG | - | chr5.4:70828226-70828245 | MS.gene038203:intron | 35.0% | |
| CTAACACATTTGAATACTGC+CGG | + | chr5.4:70829559-70829578 | None:intergenic | 35.0% | |
| CTTCATGATTGTTATGGTGA+TGG | + | chr5.4:70828286-70828305 | None:intergenic | 35.0% | |
| GAAGGAACAAGTTAATCTGA+TGG | + | chr5.4:70827840-70827859 | None:intergenic | 35.0% | |
| GAATTATATAATCCGGTGGT+GGG | + | chr5.4:70828197-70828216 | None:intergenic | 35.0% | |
| GATAAAATCACAATGGCTCA+AGG | - | chr5.4:70829078-70829097 | MS.gene038203:CDS | 35.0% | |
| GTTTGTGAAGCAATAAGTCT+AGG | + | chr5.4:70828839-70828858 | None:intergenic | 35.0% | |
| TATCAAGCTGTAGTGAAGAT+TGG | - | chr5.4:70829616-70829635 | MS.gene038203:CDS | 35.0% | |
| TGAATTATATAATCCGGTGG+TGG | + | chr5.4:70828198-70828217 | None:intergenic | 35.0% | |
| TGGTGTAGATCTTAAATGGT+GGG | + | chr5.4:70827926-70827945 | None:intergenic | 35.0% | |
| TTCTGTTTATATGTGTGGAG+AGG | + | chr5.4:70827865-70827884 | None:intergenic | 35.0% | |
| ! | ACCAACAAGGAATTCAGTTT+TGG | - | chr5.4:70828426-70828445 | MS.gene038203:intron | 35.0% |
| ! | AGTCCAACAAATTTGGTTCA+TGG | - | chr5.4:70828554-70828573 | MS.gene038203:CDS | 35.0% |
| ! | ATGATCATGGTGTTGAGAAT+AGG | - | chr5.4:70829665-70829684 | MS.gene038203:CDS | 35.0% |
| ! | TAGTATCAAAGCTTCTAGGA+GGG | + | chr5.4:70828892-70828911 | None:intergenic | 35.0% |
| ! | TGATCATGGTGTTGAGAATA+GGG | - | chr5.4:70829666-70829685 | MS.gene038203:CDS | 35.0% |
| ! | TGATGGTGATGAAAAGAAGA+TGG | + | chr5.4:70828269-70828288 | None:intergenic | 35.0% |
| ! | TTTTCGACTGGAAGAGAAAA+AGG | + | chr5.4:70827713-70827732 | None:intergenic | 35.0% |
| !! | CTACTCATGTTAAGAGTACT+TGG | - | chr5.4:70828714-70828733 | MS.gene038203:CDS | 35.0% |
| !!! | GAAAGAGCTGTGTTTTGATT+TGG | - | chr5.4:70829474-70829493 | MS.gene038203:intron | 35.0% |
| AAACCGAGTGAAAGATCTTC+TGG | + | chr5.4:70828131-70828150 | None:intergenic | 40.0% | |
| ACAACAAACATACCCATCTC+AGG | + | chr5.4:70828242-70828261 | None:intergenic | 40.0% | |
| ACAACAACGTGTCAAGATTG+TGG | - | chr5.4:70828620-70828639 | MS.gene038203:CDS | 40.0% | |
| AGGTTTCAAAGATTCGATGC+CGG | - | chr5.4:70829519-70829538 | MS.gene038203:intron | 40.0% | |
| CACCTAAATGAAGCTCAGAA+AGG | + | chr5.4:70829705-70829724 | None:intergenic | 40.0% | |
| CATGGAGAAGCTGTAAGTAA+AGG | + | chr5.4:70828371-70828390 | None:intergenic | 40.0% | |
| CTTTCTGAGCTTCATTTAGG+TGG | - | chr5.4:70829703-70829722 | MS.gene038203:intron | 40.0% | |
| GACTGGAAGAGAAAAAGGTA+TGG | + | chr5.4:70827708-70827727 | None:intergenic | 40.0% | |
| GAGCTGCTTCATGATTGTTA+TGG | + | chr5.4:70828292-70828311 | None:intergenic | 40.0% | |
| GAGGTAGTATCAAAGCTTCT+AGG | + | chr5.4:70828896-70828915 | None:intergenic | 40.0% | |
| GCCAAAACTGAATTCCTTGT+TGG | + | chr5.4:70828430-70828449 | None:intergenic | 40.0% | |
| GCTGCATAAACATCATGAGA+AGG | + | chr5.4:70829796-70829815 | None:intergenic | 40.0% | |
| GGTGTAGATCTTAAATGGTG+GGG | + | chr5.4:70827925-70827944 | None:intergenic | 40.0% | |
| GTAGTATCAAAGCTTCTAGG+AGG | + | chr5.4:70828893-70828912 | None:intergenic | 40.0% | |
| GTATTAATGTGTGCAGATGC+AGG | - | chr5.4:70829499-70829518 | MS.gene038203:intron | 40.0% | |
| GTCTTCTTCATCACCAATGA+TGG | - | chr5.4:70829768-70829787 | MS.gene038203:intron | 40.0% | |
| GTGCCATGAACCAAATTTGT+TGG | + | chr5.4:70828560-70828579 | None:intergenic | 40.0% | |
| GTGGTGTAGATCTTAAATGG+TGG | + | chr5.4:70827927-70827946 | None:intergenic | 40.0% | |
| GTGTAGATCTTAAATGGTGG+GGG | + | chr5.4:70827924-70827943 | None:intergenic | 40.0% | |
| GTGTGGCTAACTAGTATAAC+TGG | + | chr5.4:70829138-70829157 | None:intergenic | 40.0% | |
| TACTACAATCCTTCTTCGCT+TGG | + | chr5.4:70828649-70828668 | None:intergenic | 40.0% | |
| TATATGTGTGGAGAGGAAGA+AGG | + | chr5.4:70827858-70827877 | None:intergenic | 40.0% | |
| TCATGAGAAGGATCCATCAT+TGG | + | chr5.4:70829784-70829803 | None:intergenic | 40.0% | |
| TCTTTCACTCGGTTTCAATG+CGG | - | chr5.4:70828136-70828155 | MS.gene038203:intron | 40.0% | |
| TGTATGTATGTAATGTGGGG+TGG | + | chr5.4:70827946-70827965 | None:intergenic | 40.0% | |
| TTACTTGGAGGTTCAGCTTA+TGG | - | chr5.4:70829838-70829857 | MS.gene038203:CDS | 40.0% | |
| ! | AACGGTGGTGCTAATAGAAA+TGG | - | chr5.4:70829742-70829761 | MS.gene038203:intron | 40.0% |
| ! | ACAAATTTGGTTCATGGCAC+TGG | - | chr5.4:70828560-70828579 | MS.gene038203:CDS | 40.0% |
| ! | AGTATCAAAGCTTCTAGGAG+GGG | + | chr5.4:70828891-70828910 | None:intergenic | 40.0% |
| ! | ATTCAGGAGCTTTTGCTGAT+TGG | - | chr5.4:70828066-70828085 | MS.gene038203:intron | 40.0% |
| ! | GGTTAAGTTGTGAGAGAGAA+GGG | + | chr5.4:70827687-70827706 | None:intergenic | 40.0% |
| ! | TAACAAACCTTGATGGCTAG+AGG | + | chr5.4:70828915-70828934 | None:intergenic | 40.0% |
| ! | TGGTTAAGTTGTGAGAGAGA+AGG | + | chr5.4:70827688-70827707 | None:intergenic | 40.0% |
| !! | AGAGTGACATCAGTTGATGA+TGG | - | chr5.4:70829577-70829596 | MS.gene038203:intron | 40.0% |
| !! | ATTGGTGGCCATGTTTTCAA+AGG | - | chr5.4:70829634-70829653 | MS.gene038203:CDS | 40.0% |
| !! | TGTTAAGAGTACTTGGGTAC+CGG | - | chr5.4:70828721-70828740 | MS.gene038203:CDS | 40.0% |
| !! | TTCAGGAGCTTTTGCTGATT+GGG | - | chr5.4:70828067-70828086 | MS.gene038203:intron | 40.0% |
| !!! | GTCAATTTGGCTTTTTCGAC+TGG | + | chr5.4:70827725-70827744 | None:intergenic | 40.0% |
| AGGAGATTGCCTTCAGATTC+AGG | - | chr5.4:70828050-70828069 | MS.gene038203:intron | 45.0% | |
| CAACACTCTTCTGTTTGTGC+TGG | - | chr5.4:70827660-70827679 | MS.gene038203:CDS | 45.0% | |
| CAAGCTGTAGTGAAGATTGG+TGG | - | chr5.4:70829619-70829638 | MS.gene038203:CDS | 45.0% | |
| CTTTCACTCGGTTTCAATGC+GGG | - | chr5.4:70828137-70828156 | MS.gene038203:intron | 45.0% | |
| GATACTACCTCTAGCCATCA+AGG | - | chr5.4:70828905-70828924 | MS.gene038203:CDS | 45.0% | |
| GCAAAAGCTCCTGAATCTGA+AGG | + | chr5.4:70828062-70828081 | None:intergenic | 45.0% | |
| GCTCCAGAAGATCTTTCACT+CGG | - | chr5.4:70828125-70828144 | MS.gene038203:intron | 45.0% | |
| GGGGTGGTGTAGATCTTAAA+TGG | + | chr5.4:70827930-70827949 | None:intergenic | 45.0% | |
| GGTTTCAAAGATTCGATGCC+GGG | - | chr5.4:70829520-70829539 | MS.gene038203:intron | 45.0% | |
| GTTTATGCAGCAGCTTCAAG+TGG | - | chr5.4:70829805-70829824 | MS.gene038203:CDS | 45.0% | |
| TCTGAGCTTCATTTAGGTGG+TGG | - | chr5.4:70829706-70829725 | MS.gene038203:intron | 45.0% | |
| TGCTGTTGGAGCTGTAATTG+TGG | + | chr5.4:70827762-70827781 | None:intergenic | 45.0% | |
| TTGTGGAAACCAAGCGAAGA+AGG | - | chr5.4:70828637-70828656 | MS.gene038203:CDS | 45.0% | |
| ! | AATTTGGTTCATGGCACTGG+TGG | - | chr5.4:70828563-70828582 | MS.gene038203:CDS | 45.0% |
| ! | CAGCACAAACAGAAGAGTGT+TGG | + | chr5.4:70827662-70827681 | None:intergenic | 45.0% |
| ! | GGTTCTAGTGGTTCAACTTC+TGG | - | chr5.4:70828803-70828822 | MS.gene038203:CDS | 45.0% |
| !! | ATTTGGTTCATGGCACTGGT+GGG | - | chr5.4:70828564-70828583 | MS.gene038203:CDS | 45.0% |
| !! | GGTGGTGGTGGTAATAACAA+CGG | - | chr5.4:70829724-70829743 | MS.gene038203:intron | 45.0% |
| TATGCAGCAGCTTCAAGTGG+TGG | - | chr5.4:70829808-70829827 | MS.gene038203:CDS | 50.0% | |
| TGTTGTTCCTCCACCACTAC+TGG | + | chr5.4:70828606-70828625 | None:intergenic | 50.0% | |
| ! | GAGCTTCATTTAGGTGGTGG+TGG | - | chr5.4:70829709-70829728 | MS.gene038203:intron | 50.0% |
| ! | GGTGGTGGTAATAACAACGG+TGG | - | chr5.4:70829727-70829746 | MS.gene038203:intron | 50.0% |
| !! | ACTGGTGGGTTAACTGGTTC+TGG | - | chr5.4:70828578-70828597 | MS.gene038203:CDS | 50.0% |
| !! | ACTGGTTCTGGTACCAGTAG+TGG | - | chr5.4:70828590-70828609 | MS.gene038203:CDS | 50.0% |
| !! | AGTGGTGGTGGAGGATTACT+TGG | - | chr5.4:70829823-70829842 | MS.gene038203:CDS | 50.0% |
| !! | ATATAATCCGGTGGTGGGTC+CGG | + | chr5.4:70828192-70828211 | None:intergenic | 50.0% |
| !! | CTTCATTTAGGTGGTGGTGG+TGG | - | chr5.4:70829712-70829731 | MS.gene038203:intron | 50.0% |
| CGTTCCCTTCTTCTAGCAGC+CGG | + | chr5.4:70828743-70828762 | None:intergenic | 55.0% | |
| GCTTCTGCTGCTGTTGCTGT+TGG | + | chr5.4:70827776-70827795 | None:intergenic | 55.0% | |
| TATAACCCCGACACCGAGAG+CGG | + | chr5.4:70828348-70828367 | None:intergenic | 55.0% | |
| TCTGGTACCAGTAGTGGTGG+AGG | - | chr5.4:70828596-70828615 | MS.gene038203:CDS | 55.0% | |
| TTCTTCGACCGCGACAACGA+CGG | - | chr5.4:70828766-70828785 | MS.gene038203:CDS | 55.0% | |
| ! | GGTTCTGGTACCAGTAGTGG+TGG | - | chr5.4:70828593-70828612 | MS.gene038203:CDS | 55.0% |
| !! | CATGGCACTGGTGGGTTAAC+TGG | - | chr5.4:70828572-70828591 | MS.gene038203:CDS | 55.0% |
| !! | GGTACCGGCTGCTAGAAGAA+GGG | - | chr5.4:70828736-70828755 | MS.gene038203:CDS | 55.0% |
| !! | GGTGGTGGAGGATTACTTGG+AGG | - | chr5.4:70829826-70829845 | MS.gene038203:CDS | 55.0% |
| !! | GTTGCTGGTGGTGGTTCTAG+TGG | - | chr5.4:70828791-70828810 | MS.gene038203:CDS | 55.0% |
| !! | TTCTGGAGCAGCAGCACGAA+GGG | + | chr5.4:70828114-70828133 | None:intergenic | 55.0% |
| ACAACGACGGTGGTTGCTGG+TGG | - | chr5.4:70828779-70828798 | MS.gene038203:CDS | 60.0% | |
| AGCAACCACCGTCGTTGTCG+CGG | + | chr5.4:70828777-70828796 | None:intergenic | 60.0% | |
| GCAGCAGCTTCAAGTGGTGG+TGG | - | chr5.4:70829811-70829830 | MS.gene038203:CDS | 60.0% | |
| ! | GTGGCGGGGTTAAGAGAGTG+AGG | + | chr5.4:70828326-70828345 | None:intergenic | 60.0% |
| !! | CTTCTGGAGCAGCAGCACGA+AGG | + | chr5.4:70828115-70828134 | None:intergenic | 60.0% |
| !! | GCAGCTTCAAGTGGTGGTGG+AGG | - | chr5.4:70829814-70829833 | MS.gene038203:CDS | 60.0% |
| !! | GGGTACCGGCTGCTAGAAGA+AGG | - | chr5.4:70828735-70828754 | MS.gene038203:CDS | 60.0% |
| ACGACGGTGGTTGCTGGTGG+TGG | - | chr5.4:70828782-70828801 | MS.gene038203:CDS | 65.0% | |
| CTTAACCCCGCCACCGCTCT+CGG | - | chr5.4:70828332-70828351 | MS.gene038203:intron | 65.0% | |
| GCCGGGTCAAGTACGTGCAC+CGG | - | chr5.4:70829537-70829556 | MS.gene038203:intron | 65.0% | |
| GCCGGTGCACGTACTTGACC+CGG | + | chr5.4:70829541-70829560 | None:intergenic | 65.0% | |
| GCGACAACGACGGTGGTTGC+TGG | - | chr5.4:70828776-70828795 | MS.gene038203:CDS | 65.0% | |
| GGAAACGCCGGAGCTTCCAC+CGG | - | chr5.4:70828170-70828189 | MS.gene038203:intron | 65.0% | |
| GGTGGAAGCTCCGGCGTTTC+CGG | + | chr5.4:70828171-70828190 | None:intergenic | 65.0% | |
| TTCAATGCGGGTCCCACCGC+CGG | - | chr5.4:70828149-70828168 | MS.gene038203:intron | 65.0% | |
| TTCGACCGCGACAACGACGG+TGG | - | chr5.4:70828769-70828788 | MS.gene038203:CDS | 65.0% | |
| !! | TAATCCGGTGGTGGGTCCGG+TGG | + | chr5.4:70828189-70828208 | None:intergenic | 65.0% |
| AACCCCGACACCGAGAGCGG+TGG | + | chr5.4:70828345-70828364 | None:intergenic | 70.0% | |
| GCTTCCACCGGACCCACCAC+CGG | - | chr5.4:70828182-70828201 | MS.gene038203:intron | 70.0% | |
| GGAAGCTCCGGCGTTTCCGG+CGG | + | chr5.4:70828168-70828187 | None:intergenic | 70.0% | |
| GGTGGGTCCGGTGGAAGCTC+CGG | + | chr5.4:70828180-70828199 | None:intergenic | 70.0% | |
| AGCTCCGGCGTTTCCGGCGG+TGG | + | chr5.4:70828165-70828184 | None:intergenic | 75.0% | |
| CCCGACACCGAGAGCGGTGG+CGG | + | chr5.4:70828342-70828361 | None:intergenic | 75.0% | |
| CCGACACCGAGAGCGGTGGC+GGG | + | chr5.4:70828341-70828360 | None:intergenic | 75.0% | |
| CGACACCGAGAGCGGTGGCG+GGG | + | chr5.4:70828340-70828359 | None:intergenic | 75.0% | |
| GCTCCGGCGTTTCCGGCGGT+GGG | + | chr5.4:70828164-70828183 | None:intergenic | 75.0% | |
| GGTCCCACCGCCGGAAACGC+CGG | - | chr5.4:70828158-70828177 | MS.gene038203:intron | 75.0% | |
| ! | CCCGCCACCGCTCTCGGTGT+CGG | - | chr5.4:70828338-70828357 | MS.gene038203:intron | 75.0% |
| !! | CCGCCACCGCTCTCGGTGTC+GGG | - | chr5.4:70828339-70828358 | MS.gene038203:intron | 75.0% |
| !! | CGCCACCGCTCTCGGTGTCG+GGG | - | chr5.4:70828340-70828359 | MS.gene038203:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 70827564 | 70829876 | 70827564 | ID=MS.gene038203 |
| chr5.4 | mRNA | 70827564 | 70829876 | 70827564 | ID=MS.gene038203.t1;Parent=MS.gene038203 |
| chr5.4 | exon | 70829795 | 70829876 | 70829795 | ID=MS.gene038203.t1.exon1;Parent=MS.gene038203.t1 |
| chr5.4 | CDS | 70829795 | 70829876 | 70829795 | ID=cds.MS.gene038203.t1;Parent=MS.gene038203.t1 |
| chr5.4 | exon | 70829589 | 70829714 | 70829589 | ID=MS.gene038203.t1.exon2;Parent=MS.gene038203.t1 |
| chr5.4 | CDS | 70829589 | 70829714 | 70829589 | ID=cds.MS.gene038203.t1;Parent=MS.gene038203.t1 |
| chr5.4 | exon | 70828514 | 70829404 | 70828514 | ID=MS.gene038203.t1.exon3;Parent=MS.gene038203.t1 |
| chr5.4 | CDS | 70828514 | 70829404 | 70828514 | ID=cds.MS.gene038203.t1;Parent=MS.gene038203.t1 |
| chr5.4 | exon | 70827564 | 70827925 | 70827564 | ID=MS.gene038203.t1.exon4;Parent=MS.gene038203.t1 |
| chr5.4 | CDS | 70827564 | 70827925 | 70827564 | ID=cds.MS.gene038203.t1;Parent=MS.gene038203.t1 |
| Gene Sequence |
| Protein sequence |
