Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038265.t1 | XP_003617362.1 | 96 | 594 | 23 | 1 | 1 | 593 | 1 | 594 | 3.10E-287 | 997.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038265.t1 | E7BQV0 | 59.0 | 529 | 210 | 4 | 65 | 591 | 61 | 584 | 9.4e-168 | 591.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038265.t1 | G7K396 | 96.0 | 594 | 23 | 1 | 1 | 593 | 1 | 594 | 2.2e-287 | 997.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038265.t1 | TR | TRAF |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038265.t1 | MTR_5g090770 | 95.960 | 594 | 23 | 1 | 1 | 593 | 1 | 594 | 0.0 | 1122 |
| MS.gene038265.t1 | MTR_5g090770 | 96.372 | 441 | 15 | 1 | 1 | 440 | 1 | 441 | 0.0 | 874 |
| MS.gene038265.t1 | MTR_2g028950 | 60.073 | 551 | 210 | 5 | 18 | 564 | 19 | 563 | 0.0 | 669 |
| MS.gene038265.t1 | MTR_2g028950 | 58.776 | 490 | 192 | 5 | 18 | 503 | 19 | 502 | 0.0 | 572 |
| MS.gene038265.t1 | MTR_2g039880 | 39.437 | 568 | 313 | 11 | 10 | 564 | 6 | 555 | 8.55e-121 | 369 |
| MS.gene038265.t1 | MTR_1g051025 | 32.383 | 386 | 227 | 8 | 54 | 407 | 2 | 385 | 9.28e-51 | 182 |
| MS.gene038265.t1 | MTR_7g090020 | 32.603 | 365 | 221 | 8 | 66 | 407 | 24 | 386 | 1.96e-48 | 176 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038265.t1 | AT5G45110 | 53.296 | 531 | 229 | 6 | 42 | 561 | 35 | 557 | 0.0 | 555 |
| MS.gene038265.t1 | AT4G19660 | 51.920 | 547 | 229 | 9 | 33 | 561 | 20 | 550 | 0.0 | 529 |
| MS.gene038265.t1 | AT4G19660 | 49.652 | 574 | 228 | 10 | 33 | 561 | 20 | 577 | 6.93e-177 | 514 |
| MS.gene038265.t1 | AT5G45110 | 52.452 | 469 | 208 | 5 | 42 | 503 | 35 | 495 | 4.03e-166 | 483 |
| MS.gene038265.t1 | AT1G64280 | 38.214 | 560 | 316 | 10 | 23 | 564 | 15 | 562 | 2.71e-113 | 350 |
| MS.gene038265.t1 | AT4G26120 | 37.819 | 587 | 333 | 13 | 16 | 589 | 16 | 583 | 2.80e-112 | 348 |
| MS.gene038265.t1 | AT4G26120 | 37.819 | 587 | 333 | 13 | 16 | 589 | 15 | 582 | 3.16e-112 | 348 |
| MS.gene038265.t1 | AT3G57130 | 32.300 | 387 | 240 | 10 | 40 | 407 | 1 | 384 | 2.22e-50 | 181 |
| MS.gene038265.t1 | AT2G41370 | 32.703 | 370 | 218 | 9 | 66 | 407 | 25 | 391 | 8.13e-49 | 177 |
| MS.gene038265.t1 | AT3G57130 | 31.737 | 167 | 100 | 5 | 40 | 196 | 1 | 163 | 3.18e-17 | 80.5 |
Find 103 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGGGATTGTAATCTTAAT+TGG | 0.155412 | 5.4:-71574296 | None:intergenic |
| GAGCCTTGTCAACAAAATTT+AGG | 0.226635 | 5.4:-71573041 | None:intergenic |
| TGACATGGACATCATATATT+TGG | 0.235777 | 5.4:+71573155 | MS.gene038265:CDS |
| TTTGTATACTGGAAAGTTAA+AGG | 0.276961 | 5.4:+71572201 | MS.gene038265:CDS |
| TTCTTGCATTATTTGTATAC+TGG | 0.287135 | 5.4:+71572190 | MS.gene038265:CDS |
| TCAACACATGTTGTCACTTC+TGG | 0.315551 | 5.4:-71572232 | None:intergenic |
| TGATGTGCAGCCATTAAAAT+TGG | 0.325931 | 5.4:-71573081 | None:intergenic |
| ATGAAAGATTTGGTGCCTTA+TGG | 0.339234 | 5.4:+71572139 | MS.gene038265:CDS |
| TTGTGCATATTGTGATTCTA+AGG | 0.357367 | 5.4:+71573401 | MS.gene038265:CDS |
| CATTGCCACATGTTCATTGT+TGG | 0.365929 | 5.4:-71571897 | None:intergenic |
| CGGTATTCATCGATGTATAT+TGG | 0.369661 | 5.4:+71572033 | MS.gene038265:CDS |
| GCATCAGAAACCACTCTTGA+TGG | 0.370481 | 5.4:+71573558 | MS.gene038265:CDS |
| GTTCAAGAAGTTCTTACTCT+TGG | 0.391310 | 5.4:+71573426 | MS.gene038265:CDS |
| ATCTGCCCCAGCATTCTCTA+TGG | 0.400544 | 5.4:-71574181 | None:intergenic |
| GACGAAGAAAGCACGGTTCA+TGG | 0.401163 | 5.4:+71574554 | MS.gene038265:CDS |
| GAAAGGAAAAGATGAAGTTA+AGG | 0.405662 | 5.4:+71572090 | MS.gene038265:CDS |
| CGTCAGAGTCCAATGCCTTA+AGG | 0.406730 | 5.4:-71573305 | None:intergenic |
| TGCAAGTTCAACAGCTTTGA+AGG | 0.409850 | 5.4:+71574218 | MS.gene038265:CDS |
| AAGGTATCTCATGAAAGATT+TGG | 0.411203 | 5.4:+71572129 | MS.gene038265:CDS |
| GGTTCCACTTCCATTGCATC+TGG | 0.423349 | 5.4:-71573249 | None:intergenic |
| ATTGCATCTGGTGTTGATTC+CGG | 0.423636 | 5.4:-71573237 | None:intergenic |
| GAAGGCATTTCACAAGGATA+TGG | 0.425039 | 5.4:+71574596 | MS.gene038265:CDS |
| CTTCTTCCGTTCCCTTCTCT+AGG | 0.435165 | 5.4:-71574524 | None:intergenic |
| GTGTTGATTCCGGCAGAGAT+TGG | 0.467675 | 5.4:-71573227 | None:intergenic |
| TCCAAAGCAAAATTGATAGC+AGG | 0.467829 | 5.4:-71572283 | None:intergenic |
| TGTTCTTTCCTGCTGAGGCA+AGG | 0.476184 | 5.4:+71574154 | MS.gene038265:CDS |
| TGTATCCACGAGGATTCTTA+AGG | 0.478040 | 5.4:-71573464 | None:intergenic |
| ATGGCTACCCTTGCCTCAGC+AGG | 0.479921 | 5.4:-71574162 | None:intergenic |
| AGAAGTTCTTACTCTTGGAT+TGG | 0.484032 | 5.4:+71573431 | MS.gene038265:CDS |
| AAATCTTTCATGAGATACCT+TGG | 0.484404 | 5.4:-71572127 | None:intergenic |
| CTCTTATCATTCACAGTCAC+AGG | 0.484685 | 5.4:-71573270 | None:intergenic |
| GTTCTTTCCTGCTGAGGCAA+GGG | 0.487551 | 5.4:+71574155 | MS.gene038265:CDS |
| CTGTGAATGATAAGAGTGTC+AGG | 0.490919 | 5.4:+71573277 | MS.gene038265:CDS |
| GAGTGTCAGGAAAATCCTTA+AGG | 0.494210 | 5.4:+71573290 | MS.gene038265:CDS |
| CACATGTTCATTGTTGGTTG+AGG | 0.498708 | 5.4:-71571891 | None:intergenic |
| CAGGAAAATCCTTAAGGCAT+TGG | 0.500644 | 5.4:+71573296 | MS.gene038265:CDS |
| GGAAAAGATGAAGTTAAGGA+TGG | 0.502054 | 5.4:+71572094 | MS.gene038265:CDS |
| GGGTAGCCATAGAGAATGCT+GGG | 0.504854 | 5.4:+71574175 | MS.gene038265:CDS |
| CCTCCGAGTCCAATCTCTGC+CGG | 0.505391 | 5.4:+71573218 | MS.gene038265:CDS |
| AGGGTAGCCATAGAGAATGC+TGG | 0.515215 | 5.4:+71574174 | MS.gene038265:CDS |
| TTTCAATAGTGCAACCAAGA+TGG | 0.516370 | 5.4:-71573523 | None:intergenic |
| TGCATTGTCTTCTACATCAT+CGG | 0.516416 | 5.4:+71574647 | MS.gene038265:CDS |
| TACATCATCGGCAAGTCGTA+GGG | 0.521228 | 5.4:+71574659 | MS.gene038265:CDS |
| ACGAAAGGATCCATCCATCT+TGG | 0.521666 | 5.4:+71573509 | MS.gene038265:CDS |
| GATTTCTTCAACAAGAATCT+CGG | 0.523434 | 5.4:-71572005 | None:intergenic |
| TCACGTTGCCGCAAGACGAA+AGG | 0.524031 | 5.4:+71573494 | MS.gene038265:CDS |
| GATGAAGTTAAGGATGGAAA+GGG | 0.524098 | 5.4:+71572100 | MS.gene038265:CDS |
| GAATGCAATGAGAGAGAAGC+TGG | 0.524808 | 5.4:-71573116 | None:intergenic |
| TTGGTGCCTTATGGCAGTGT+TGG | 0.525095 | 5.4:+71572148 | MS.gene038265:CDS |
| AAGTTCTATGTCAGTGAACA+TGG | 0.525587 | 5.4:+71573707 | MS.gene038265:CDS |
| AGATGAAGTTAAGGATGGAA+AGG | 0.525860 | 5.4:+71572099 | MS.gene038265:CDS |
| CTACATCATCGGCAAGTCGT+AGG | 0.526560 | 5.4:+71574658 | MS.gene038265:CDS |
| AAATTGTGTACAGTTGAGAA+TGG | 0.529000 | 5.4:+71574429 | MS.gene038265:intron |
| TGTGTACAGTTGAGAATGGT+AGG | 0.529889 | 5.4:+71574433 | MS.gene038265:intron |
| GGATGGATCCTTTCGTCTTG+CGG | 0.530660 | 5.4:-71573502 | None:intergenic |
| CTGGATTACCTTGAAAATAG+AGG | 0.531111 | 5.4:+71573771 | MS.gene038265:CDS |
| TAGGCTGTTCTTTCCTGCTG+AGG | 0.533770 | 5.4:+71574149 | MS.gene038265:CDS |
| AACACCAGATGCAATGGAAG+TGG | 0.536591 | 5.4:+71573245 | MS.gene038265:CDS |
| TCATATCCAACACTGCCATA+AGG | 0.543522 | 5.4:-71572154 | None:intergenic |
| GGAAGGAGTCTCACAAGGAT+AGG | 0.544010 | 5.4:+71573649 | MS.gene038265:CDS |
| ATGTTGCAGTTGCATTTGCT+AGG | 0.553352 | 5.4:+71574130 | MS.gene038265:intron |
| CATCACTCAATAACTTCTCA+AGG | 0.556447 | 5.4:-71571961 | None:intergenic |
| CGGCAGAGATTGGACTCGGA+GGG | 0.559848 | 5.4:-71573217 | None:intergenic |
| ATATCTAGACGATGATATGC+CGG | 0.559903 | 5.4:+71574491 | MS.gene038265:CDS |
| TCAGAGATTGACGAGGCGAA+AGG | 0.561716 | 5.4:+71573602 | MS.gene038265:CDS |
| ATTCCGGCAGAGATTGGACT+CGG | 0.564498 | 5.4:-71573221 | None:intergenic |
| AGCAGAGGACGAAGAAAGCA+CGG | 0.571635 | 5.4:+71574547 | MS.gene038265:CDS |
| AATAGTGCAACCAAGATGGA+TGG | 0.572602 | 5.4:-71573519 | None:intergenic |
| ATGGCTGAAAATAACCAAGC+AGG | 0.574550 | 5.4:+71574615 | MS.gene038265:CDS |
| TTGAGATGATACAAAACTCA+AGG | 0.576016 | 5.4:-71571831 | None:intergenic |
| GGAATCAACACCAGATGCAA+TGG | 0.582737 | 5.4:+71573239 | MS.gene038265:CDS |
| CCAAAGCAAAATTGATAGCA+GGG | 0.584439 | 5.4:-71572282 | None:intergenic |
| TGATGATTTACACATGAGAC+TGG | 0.587404 | 5.4:+71573752 | MS.gene038265:CDS |
| AGCAGTTTGTCCATCAAGAG+TGG | 0.589661 | 5.4:-71573568 | None:intergenic |
| ACTTAAAGATGAGGTGCAGA+AGG | 0.589892 | 5.4:+71574578 | MS.gene038265:CDS |
| GATTCTTGTTGAAGAAATCC+CGG | 0.590907 | 5.4:+71572009 | MS.gene038265:CDS |
| CAACAATGAACATGTGGCAA+TGG | 0.591956 | 5.4:+71571898 | MS.gene038265:CDS |
| CATGTTGTCACTTCTGGTGG+TGG | 0.593704 | 5.4:-71572226 | None:intergenic |
| ATACATCGATGAATACCGAC+CGG | 0.594441 | 5.4:-71572028 | None:intergenic |
| CAATTTGTCAGAGATTGACG+AGG | 0.597048 | 5.4:+71573595 | MS.gene038265:CDS |
| GCAAGTTCAACAGCTTTGAA+GGG | 0.599785 | 5.4:+71574219 | MS.gene038265:CDS |
| TACATCGATGAATACCGACC+GGG | 0.606894 | 5.4:-71572027 | None:intergenic |
| ATTTCAGTCATAACTTCATG+AGG | 0.607057 | 5.4:-71573189 | None:intergenic |
| AGGGAACGGAAGAAGAGCAG+AGG | 0.616058 | 5.4:+71574532 | MS.gene038265:CDS |
| GAGAGTCGTAAGGTCTGACA+TGG | 0.616876 | 5.4:+71573140 | MS.gene038265:CDS |
| CTCAACCAACAATGAACATG+TGG | 0.620410 | 5.4:+71571892 | MS.gene038265:CDS |
| TAAGAATCCTCGTGGATACA+CGG | 0.628927 | 5.4:+71573467 | MS.gene038265:CDS |
| ACAAGCATAGTGTAGTGCAT+AGG | 0.635531 | 5.4:-71573382 | None:intergenic |
| GTTCATGGAACTTAAAGATG+AGG | 0.636671 | 5.4:+71574569 | MS.gene038265:CDS |
| AAAGTCTTAACCACAAAGTG+AGG | 0.653570 | 5.4:+71574682 | MS.gene038265:CDS |
| CCGGCAGAGATTGGACTCGG+AGG | 0.654889 | 5.4:-71573218 | None:intergenic |
| GCAGGGGAAGGAGTCTCACA+AGG | 0.661433 | 5.4:+71573644 | MS.gene038265:CDS |
| ATTGCATTCAGAGAGTCGTA+AGG | 0.666386 | 5.4:+71573130 | MS.gene038265:CDS |
| CTTGTTGAAGAAATCCCGGT+CGG | 0.667356 | 5.4:+71572013 | MS.gene038265:CDS |
| GGTGCAGAAGGCATTTCACA+AGG | 0.668394 | 5.4:+71574590 | MS.gene038265:CDS |
| ATTCTCCTTAAGAATCCTCG+TGG | 0.687759 | 5.4:+71573459 | MS.gene038265:CDS |
| GTGAGTTTGAATAAGCTCAG+TGG | 0.700757 | 5.4:+71571935 | MS.gene038265:CDS |
| ACACATGTTGTCACTTCTGG+TGG | 0.703043 | 5.4:-71572229 | None:intergenic |
| GCTGTTGAACTTGCATAGCG+TGG | 0.711386 | 5.4:-71574210 | None:intergenic |
| GGTAGCCATAGAGAATGCTG+GGG | 0.739957 | 5.4:+71574176 | MS.gene038265:CDS |
| TGAAGAACCGTGTATCCACG+AGG | 0.741022 | 5.4:-71573474 | None:intergenic |
| AGGATGGAAAGGGAAAGCCA+AGG | 0.758248 | 5.4:+71572110 | MS.gene038265:CDS |
| TCAAGCACCTCAGAACAATG+CGG | 0.766562 | 5.4:-71574465 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAGCAATAAAAATAA+AGG | - | chr5.4:71572409-71572428 | None:intergenic | 15.0% |
| !!! | AAAGTTTCATGAAAATATTT+TGG | - | chr5.4:71574066-71574085 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATACATTTTGC+AGG | + | chr5.4:71572701-71572720 | MS.gene038265:intron | 15.0% |
| !!! | TATTTCAAATTTTATTCACT+TGG | - | chr5.4:71572759-71572778 | None:intergenic | 15.0% |
| !! | AAAGGATTATCATGAAAAAA+CGG | + | chr5.4:71573620-71573639 | MS.gene038265:CDS | 20.0% |
| !!! | AATACTTAATGAATTGATTC+TGG | - | chr5.4:71573984-71574003 | None:intergenic | 20.0% |
| !!! | AATATTTTACGTAGTTTTGT+AGG | - | chr5.4:71572625-71572644 | None:intergenic | 20.0% |
| !!! | TTTCATGAAACTTTTGAATT+TGG | + | chr5.4:71574072-71574091 | MS.gene038265:intron | 20.0% |
| ! | ACATTAGCTCATTTCAAAAA+AGG | - | chr5.4:71572991-71573010 | None:intergenic | 25.0% |
| ! | AGCAATAAAAATAAAGGAGA+AGG | - | chr5.4:71572403-71572422 | None:intergenic | 25.0% |
| ! | AGCACATCAAATTTATATGA+AGG | - | chr5.4:71572811-71572830 | None:intergenic | 25.0% |
| ! | ATCTTTATACGAACATCAAA+TGG | + | chr5.4:71574378-71574397 | MS.gene038265:intron | 25.0% |
| ! | TCAACTGTACACAATTTAAT+TGG | - | chr5.4:71574426-71574445 | None:intergenic | 25.0% |
| ! | TTCTTGCATTATTTGTATAC+TGG | + | chr5.4:71572190-71572209 | MS.gene038265:CDS | 25.0% |
| ! | TTGAATTTGGAAGCTTATTA+TGG | + | chr5.4:71574085-71574104 | MS.gene038265:intron | 25.0% |
| ! | TTTGTATACTGGAAAGTTAA+AGG | + | chr5.4:71572201-71572220 | MS.gene038265:CDS | 25.0% |
| !! | AGATGTCATTCCAATTTTAA+TGG | + | chr5.4:71573071-71573090 | MS.gene038265:CDS | 25.0% |
| !! | AGCTTAGGATTTACATTTTA+CGG | - | chr5.4:71572457-71572476 | None:intergenic | 25.0% |
| !! | TTTATACATTTTGCAGGTTT+TGG | + | chr5.4:71572707-71572726 | MS.gene038265:intron | 25.0% |
| !!! | CTCAAGTTTTTTTTTTCTTC+CGG | - | chr5.4:71572968-71572987 | None:intergenic | 25.0% |
| !!! | TATCTGTTTACTTTTGATCT+AGG | + | chr5.4:71572579-71572598 | MS.gene038265:intron | 25.0% |
| !!! | TTCATGAAAATATTTTGGTG+AGG | - | chr5.4:71574061-71574080 | None:intergenic | 25.0% |
| !!! | TTTCACGAACTTTTTAAGAA+AGG | + | chr5.4:71572073-71572092 | MS.gene038265:CDS | 25.0% |
| AAATCTTTCATGAGATACCT+TGG | - | chr5.4:71572130-71572149 | None:intergenic | 30.0% | |
| AAATTGTGTACAGTTGAGAA+TGG | + | chr5.4:71574429-71574448 | MS.gene038265:intron | 30.0% | |
| ACTGTACACAATTTAATTGG+AGG | - | chr5.4:71574423-71574442 | None:intergenic | 30.0% | |
| ATTTCAGTCATAACTTCATG+AGG | - | chr5.4:71573192-71573211 | None:intergenic | 30.0% | |
| CAAGGGATTGTAATCTTAAT+TGG | - | chr5.4:71574299-71574318 | None:intergenic | 30.0% | |
| CCTAAGCTTGAATATTAGAA+AGG | + | chr5.4:71572469-71572488 | MS.gene038265:intron | 30.0% | |
| CCTTTCTAATATTCAAGCTT+AGG | - | chr5.4:71572472-71572491 | None:intergenic | 30.0% | |
| GAAAGGAAAAGATGAAGTTA+AGG | + | chr5.4:71572090-71572109 | MS.gene038265:CDS | 30.0% | |
| GATTTCTTCAACAAGAATCT+CGG | - | chr5.4:71572008-71572027 | None:intergenic | 30.0% | |
| TGACATGGACATCATATATT+TGG | + | chr5.4:71573155-71573174 | MS.gene038265:CDS | 30.0% | |
| TTACAATCCCTTGTAAAAAC+AGG | + | chr5.4:71574306-71574325 | MS.gene038265:CDS | 30.0% | |
| TTGAGATGATACAAAACTCA+AGG | - | chr5.4:71571834-71571853 | None:intergenic | 30.0% | |
| TTGGTTGCACTATTGAAAAA+CGG | + | chr5.4:71573528-71573547 | MS.gene038265:CDS | 30.0% | |
| TTGTGCATATTGTGATTCTA+AGG | + | chr5.4:71573401-71573420 | MS.gene038265:CDS | 30.0% | |
| ! | AAGGTATCTCATGAAAGATT+TGG | + | chr5.4:71572129-71572148 | MS.gene038265:CDS | 30.0% |
| ! | AGTTTTCTTGTTCTAACAGA+AGG | - | chr5.4:71574276-71574295 | None:intergenic | 30.0% |
| ! | ATATCTTTTTACTGATGCAG+AGG | + | chr5.4:71573013-71573032 | MS.gene038265:intron | 30.0% |
| ! | GTTACTGAATCTTCTTTTAG+AGG | + | chr5.4:71573335-71573354 | MS.gene038265:CDS | 30.0% |
| ! | TATTAGTCTAAGCTAAGCTT+TGG | - | chr5.4:71572664-71572683 | None:intergenic | 30.0% |
| ! | TCTCCTAAATTTTGTTGACA+AGG | + | chr5.4:71573038-71573057 | MS.gene038265:CDS | 30.0% |
| ! | TTCTTTTCCTTTGTGCTATA+TGG | + | chr5.4:71572936-71572955 | MS.gene038265:intron | 30.0% |
| !! | ACCTCTAGAATCAATTCTAA+AGG | - | chr5.4:71573834-71573853 | None:intergenic | 30.0% |
| !! | GTCACTTGCTATTATACTTT+AGG | + | chr5.4:71574012-71574031 | MS.gene038265:intron | 30.0% |
| !!! | GATCATACCTGTTTTTACAA+GGG | - | chr5.4:71574316-71574335 | None:intergenic | 30.0% |
| !!! | TGATCATACCTGTTTTTACA+AGG | - | chr5.4:71574317-71574336 | None:intergenic | 30.0% |
| AAAGTCTTAACCACAAAGTG+AGG | + | chr5.4:71574682-71574701 | MS.gene038265:CDS | 35.0% | |
| AAGTTCTATGTCAGTGAACA+TGG | + | chr5.4:71573707-71573726 | MS.gene038265:CDS | 35.0% | |
| ACTAATAAGCAACAGCAGAT+TGG | + | chr5.4:71572677-71572696 | MS.gene038265:intron | 35.0% | |
| AGAAGTTCTTACTCTTGGAT+TGG | + | chr5.4:71573431-71573450 | MS.gene038265:CDS | 35.0% | |
| AGATGAAGTTAAGGATGGAA+AGG | + | chr5.4:71572099-71572118 | MS.gene038265:CDS | 35.0% | |
| ATATCTAGACGATGATATGC+CGG | + | chr5.4:71574491-71574510 | MS.gene038265:CDS | 35.0% | |
| ATTCACTTGGAACATAGATG+AGG | - | chr5.4:71572746-71572765 | None:intergenic | 35.0% | |
| CATCACTCAATAACTTCTCA+AGG | - | chr5.4:71571964-71571983 | None:intergenic | 35.0% | |
| CGGTATTCATCGATGTATAT+TGG | + | chr5.4:71572033-71572052 | MS.gene038265:CDS | 35.0% | |
| CTGGATTACCTTGAAAATAG+AGG | + | chr5.4:71573771-71573790 | MS.gene038265:CDS | 35.0% | |
| CTTGATAAATACACCAACAC+AGG | - | chr5.4:71572884-71572903 | None:intergenic | 35.0% | |
| GATGAAGTTAAGGATGGAAA+GGG | + | chr5.4:71572100-71572119 | MS.gene038265:CDS | 35.0% | |
| GATTCTTGTTGAAGAAATCC+CGG | + | chr5.4:71572009-71572028 | MS.gene038265:CDS | 35.0% | |
| GGAAAAGATGAAGTTAAGGA+TGG | + | chr5.4:71572094-71572113 | MS.gene038265:CDS | 35.0% | |
| GGTAGACAAACATGCTTATT+AGG | - | chr5.4:71572790-71572809 | None:intergenic | 35.0% | |
| GTTCAAGAAGTTCTTACTCT+TGG | + | chr5.4:71573426-71573445 | MS.gene038265:CDS | 35.0% | |
| GTTCATGGAACTTAAAGATG+AGG | + | chr5.4:71574569-71574588 | MS.gene038265:CDS | 35.0% | |
| TATCATGAAAAAACGGTGCA+GGG | + | chr5.4:71573627-71573646 | MS.gene038265:CDS | 35.0% | |
| TCCTTTGTGCTATATGGAAT+AGG | + | chr5.4:71572942-71572961 | MS.gene038265:intron | 35.0% | |
| TGATGATTTACACATGAGAC+TGG | + | chr5.4:71573752-71573771 | MS.gene038265:CDS | 35.0% | |
| TGATGTGCAGCCATTAAAAT+TGG | - | chr5.4:71573084-71573103 | None:intergenic | 35.0% | |
| TGCATTGTCTTCTACATCAT+CGG | + | chr5.4:71574647-71574666 | MS.gene038265:CDS | 35.0% | |
| TGTGTAGAAGAGAGCAAATA+TGG | + | chr5.4:71572430-71572449 | MS.gene038265:intron | 35.0% | |
| TTATCATGAAAAAACGGTGC+AGG | + | chr5.4:71573626-71573645 | MS.gene038265:CDS | 35.0% | |
| TTTCAATAGTGCAACCAAGA+TGG | - | chr5.4:71573526-71573545 | None:intergenic | 35.0% | |
| ! | CCAAAGCAAAATTGATAGCA+GGG | - | chr5.4:71572285-71572304 | None:intergenic | 35.0% |
| ! | GACAAGTACCTCTATTTTCA+AGG | - | chr5.4:71573782-71573801 | None:intergenic | 35.0% |
| ! | GAGCCTTGTCAACAAAATTT+AGG | - | chr5.4:71573044-71573063 | None:intergenic | 35.0% |
| ! | TCCAAAGCAAAATTGATAGC+AGG | - | chr5.4:71572286-71572305 | None:intergenic | 35.0% |
| !! | ATGAAAGATTTGGTGCCTTA+TGG | + | chr5.4:71572139-71572158 | MS.gene038265:CDS | 35.0% |
| !! | GATGTTTTTGTCCTAGAGAA+GGG | + | chr5.4:71574513-71574532 | MS.gene038265:CDS | 35.0% |
| !! | GCCTTTAGAATTGATTCTAG+AGG | + | chr5.4:71573830-71573849 | MS.gene038265:intron | 35.0% |
| !! | TTCTCTAGGACAAAAACATC+CGG | - | chr5.4:71574513-71574532 | None:intergenic | 35.0% |
| !!! | AGAGCTTGCTTTAGTTTTTC+AGG | + | chr5.4:71572339-71572358 | MS.gene038265:CDS | 35.0% |
| AATAGTGCAACCAAGATGGA+TGG | - | chr5.4:71573522-71573541 | None:intergenic | 40.0% | |
| ACAAGCATAGTGTAGTGCAT+AGG | - | chr5.4:71573385-71573404 | None:intergenic | 40.0% | |
| ACTTAAAGATGAGGTGCAGA+AGG | + | chr5.4:71574578-71574597 | MS.gene038265:CDS | 40.0% | |
| AGAATTCAGCCAAAATGCCT+AGG | - | chr5.4:71572521-71572540 | None:intergenic | 40.0% | |
| ATACATCGATGAATACCGAC+CGG | - | chr5.4:71572031-71572050 | None:intergenic | 40.0% | |
| ATCATGAAAAAACGGTGCAG+GGG | + | chr5.4:71573628-71573647 | MS.gene038265:CDS | 40.0% | |
| ATGCAGATGAAAAACCTGCT+TGG | - | chr5.4:71574632-71574651 | None:intergenic | 40.0% | |
| ATGGCTGAAAATAACCAAGC+AGG | + | chr5.4:71574615-71574634 | MS.gene038265:CDS | 40.0% | |
| ATGTTGCAGTTGCATTTGCT+AGG | + | chr5.4:71574130-71574149 | MS.gene038265:intron | 40.0% | |
| ATTCTCCTTAAGAATCCTCG+TGG | + | chr5.4:71573459-71573478 | MS.gene038265:CDS | 40.0% | |
| ATTGCATTCAGAGAGTCGTA+AGG | + | chr5.4:71573130-71573149 | MS.gene038265:CDS | 40.0% | |
| CAACAATGAACATGTGGCAA+TGG | + | chr5.4:71571898-71571917 | MS.gene038265:CDS | 40.0% | |
| CAATTTGTCAGAGATTGACG+AGG | + | chr5.4:71573595-71573614 | MS.gene038265:CDS | 40.0% | |
| CAGGAAAATCCTTAAGGCAT+TGG | + | chr5.4:71573296-71573315 | MS.gene038265:CDS | 40.0% | |
| CATTGCCACATGTTCATTGT+TGG | - | chr5.4:71571900-71571919 | None:intergenic | 40.0% | |
| CCAACACAGGAAAACAGATT+TGG | - | chr5.4:71572871-71572890 | None:intergenic | 40.0% | |
| CTCAACCAACAATGAACATG+TGG | + | chr5.4:71571892-71571911 | MS.gene038265:CDS | 40.0% | |
| CTCTTATCATTCACAGTCAC+AGG | - | chr5.4:71573273-71573292 | None:intergenic | 40.0% | |
| GAGTGTCAGGAAAATCCTTA+AGG | + | chr5.4:71573290-71573309 | MS.gene038265:CDS | 40.0% | |
| GCACAAGAAAATGACGCTTA+AGG | - | chr5.4:71572381-71572400 | None:intergenic | 40.0% | |
| GCCTATTCCATATAGCACAA+AGG | - | chr5.4:71572946-71572965 | None:intergenic | 40.0% | |
| GTGAGTTTGAATAAGCTCAG+TGG | + | chr5.4:71571935-71571954 | MS.gene038265:CDS | 40.0% | |
| TAAGAATCCTCGTGGATACA+CGG | + | chr5.4:71573467-71573486 | MS.gene038265:CDS | 40.0% | |
| TCATATCCAACACTGCCATA+AGG | - | chr5.4:71572157-71572176 | None:intergenic | 40.0% | |
| TGAGGTTCTTATGTGTGGAT+TGG | - | chr5.4:71574043-71574062 | None:intergenic | 40.0% | |
| TGTATCCACGAGGATTCTTA+AGG | - | chr5.4:71573467-71573486 | None:intergenic | 40.0% | |
| TGTGTACAGTTGAGAATGGT+AGG | + | chr5.4:71574433-71574452 | MS.gene038265:intron | 40.0% | |
| TTGTGCTATATGGAATAGGC+CGG | + | chr5.4:71572946-71572965 | MS.gene038265:intron | 40.0% | |
| TTTGGTGAGGTTCTTATGTG+TGG | - | chr5.4:71574048-71574067 | None:intergenic | 40.0% | |
| ! | CACATGTTCATTGTTGGTTG+AGG | - | chr5.4:71571894-71571913 | None:intergenic | 40.0% |
| ! | CCAAATCTGTTTTCCTGTGT+TGG | + | chr5.4:71572868-71572887 | MS.gene038265:intron | 40.0% |
| ! | CCCTGCTATCAATTTTGCTT+TGG | + | chr5.4:71572282-71572301 | MS.gene038265:CDS | 40.0% |
| ! | TCAACACATGTTGTCACTTC+TGG | - | chr5.4:71572235-71572254 | None:intergenic | 40.0% |
| ! | TGCAAGTTCAACAGCTTTGA+AGG | + | chr5.4:71574218-71574237 | MS.gene038265:CDS | 40.0% |
| ! | TTTTGTCCTAGAGAAGGGAA+CGG | + | chr5.4:71574518-71574537 | MS.gene038265:CDS | 40.0% |
| !! | ATTGCATCTGGTGTTGATTC+CGG | - | chr5.4:71573240-71573259 | None:intergenic | 40.0% |
| !! | CTGTGAATGATAAGAGTGTC+AGG | + | chr5.4:71573277-71573296 | MS.gene038265:CDS | 40.0% |
| !! | GAAGGCATTTCACAAGGATA+TGG | + | chr5.4:71574596-71574615 | MS.gene038265:CDS | 40.0% |
| !! | GCAAGTTCAACAGCTTTGAA+GGG | + | chr5.4:71574219-71574238 | MS.gene038265:CDS | 40.0% |
| !! | GGATGTTTTTGTCCTAGAGA+AGG | + | chr5.4:71574512-71574531 | MS.gene038265:CDS | 40.0% |
| !!! | CTTTTTTCCGCATTGTTCTG+AGG | + | chr5.4:71574458-71574477 | MS.gene038265:CDS | 40.0% |
| AACACCAGATGCAATGGAAG+TGG | + | chr5.4:71573245-71573264 | MS.gene038265:CDS | 45.0% | |
| ACGAAAGGATCCATCCATCT+TGG | + | chr5.4:71573509-71573528 | MS.gene038265:CDS | 45.0% | |
| AGCAGTTTGTCCATCAAGAG+TGG | - | chr5.4:71573571-71573590 | None:intergenic | 45.0% | |
| CTTGTTGAAGAAATCCCGGT+CGG | + | chr5.4:71572013-71572032 | MS.gene038265:CDS | 45.0% | |
| GAATGCAATGAGAGAGAAGC+TGG | - | chr5.4:71573119-71573138 | None:intergenic | 45.0% | |
| GCATCAGAAACCACTCTTGA+TGG | + | chr5.4:71573558-71573577 | MS.gene038265:CDS | 45.0% | |
| GGAATCAACACCAGATGCAA+TGG | + | chr5.4:71573239-71573258 | MS.gene038265:CDS | 45.0% | |
| TACATCATCGGCAAGTCGTA+GGG | + | chr5.4:71574659-71574678 | MS.gene038265:CDS | 45.0% | |
| TACATCGATGAATACCGACC+GGG | - | chr5.4:71572030-71572049 | None:intergenic | 45.0% | |
| TCAAGCACCTCAGAACAATG+CGG | - | chr5.4:71574468-71574487 | None:intergenic | 45.0% | |
| ! | ACACATGTTGTCACTTCTGG+TGG | - | chr5.4:71572232-71572251 | None:intergenic | 45.0% |
| AGCAGAGGACGAAGAAAGCA+CGG | + | chr5.4:71574547-71574566 | MS.gene038265:CDS | 50.0% | |
| AGGATGGAAAGGGAAAGCCA+AGG | + | chr5.4:71572110-71572129 | MS.gene038265:CDS | 50.0% | |
| AGGGTAGCCATAGAGAATGC+TGG | + | chr5.4:71574174-71574193 | MS.gene038265:CDS | 50.0% | |
| ATCTGCCCCAGCATTCTCTA+TGG | - | chr5.4:71574184-71574203 | None:intergenic | 50.0% | |
| ATGCATGAGATGGTGACTGC+AGG | + | chr5.4:71572841-71572860 | MS.gene038265:intron | 50.0% | |
| ATTCCGGCAGAGATTGGACT+CGG | - | chr5.4:71573224-71573243 | None:intergenic | 50.0% | |
| CGTCAGAGTCCAATGCCTTA+AGG | - | chr5.4:71573308-71573327 | None:intergenic | 50.0% | |
| CTACATCATCGGCAAGTCGT+AGG | + | chr5.4:71574658-71574677 | MS.gene038265:CDS | 50.0% | |
| CTTCTTCCGTTCCCTTCTCT+AGG | - | chr5.4:71574527-71574546 | None:intergenic | 50.0% | |
| GACTGCGTGAATGCATGAGA+TGG | + | chr5.4:71572831-71572850 | MS.gene038265:intron | 50.0% | |
| GAGAGTCGTAAGGTCTGACA+TGG | + | chr5.4:71573140-71573159 | MS.gene038265:CDS | 50.0% | |
| GCTGTTGAACTTGCATAGCG+TGG | - | chr5.4:71574213-71574232 | None:intergenic | 50.0% | |
| GGAAGGAGTCTCACAAGGAT+AGG | + | chr5.4:71573649-71573668 | MS.gene038265:CDS | 50.0% | |
| GGATGGATCCTTTCGTCTTG+CGG | - | chr5.4:71573505-71573524 | None:intergenic | 50.0% | |
| GGGTAGCCATAGAGAATGCT+GGG | + | chr5.4:71574175-71574194 | MS.gene038265:CDS | 50.0% | |
| GGTAGCCATAGAGAATGCTG+GGG | + | chr5.4:71574176-71574195 | MS.gene038265:CDS | 50.0% | |
| GGTTCCACTTCCATTGCATC+TGG | - | chr5.4:71573252-71573271 | None:intergenic | 50.0% | |
| GTTCTTTCCTGCTGAGGCAA+GGG | + | chr5.4:71574155-71574174 | MS.gene038265:CDS | 50.0% | |
| TAGGCTGTTCTTTCCTGCTG+AGG | + | chr5.4:71574149-71574168 | MS.gene038265:CDS | 50.0% | |
| TCAGAGATTGACGAGGCGAA+AGG | + | chr5.4:71573602-71573621 | MS.gene038265:CDS | 50.0% | |
| TGAAAAAACGGTGCAGGGGA+AGG | + | chr5.4:71573632-71573651 | MS.gene038265:CDS | 50.0% | |
| TGAAGAACCGTGTATCCACG+AGG | - | chr5.4:71573477-71573496 | None:intergenic | 50.0% | |
| TGTTCTTTCCTGCTGAGGCA+AGG | + | chr5.4:71574154-71574173 | MS.gene038265:CDS | 50.0% | |
| ! | AGTCGGAGACCTAGGCATTT+TGG | + | chr5.4:71572509-71572528 | MS.gene038265:intron | 50.0% |
| ! | CATGTTGTCACTTCTGGTGG+TGG | - | chr5.4:71572229-71572248 | None:intergenic | 50.0% |
| ! | GACGAAGAAAGCACGGTTCA+TGG | + | chr5.4:71574554-71574573 | MS.gene038265:CDS | 50.0% |
| ! | TTGGTGCCTTATGGCAGTGT+TGG | + | chr5.4:71572148-71572167 | MS.gene038265:CDS | 50.0% |
| !! | GGTGCAGAAGGCATTTCACA+AGG | + | chr5.4:71574590-71574609 | MS.gene038265:CDS | 50.0% |
| !! | GTGTTGATTCCGGCAGAGAT+TGG | - | chr5.4:71573230-71573249 | None:intergenic | 50.0% |
| AGGGAACGGAAGAAGAGCAG+AGG | + | chr5.4:71574532-71574551 | MS.gene038265:CDS | 55.0% | |
| TCACGTTGCCGCAAGACGAA+AGG | + | chr5.4:71573494-71573513 | MS.gene038265:CDS | 55.0% | |
| ATGGCTACCCTTGCCTCAGC+AGG | - | chr5.4:71574165-71574184 | None:intergenic | 60.0% | |
| CCTCCGAGTCCAATCTCTGC+CGG | + | chr5.4:71573218-71573237 | MS.gene038265:CDS | 60.0% | |
| CGGCAGAGATTGGACTCGGA+GGG | - | chr5.4:71573220-71573239 | None:intergenic | 60.0% | |
| CTAGGTCTCCGACTGCAGAG+CGG | - | chr5.4:71572503-71572522 | None:intergenic | 60.0% | |
| GCAGGGGAAGGAGTCTCACA+AGG | + | chr5.4:71573644-71573663 | MS.gene038265:CDS | 60.0% | |
| TACTGCAGCCGCTCTGCAGT+CGG | + | chr5.4:71572492-71572511 | MS.gene038265:intron | 60.0% | |
| CCGGCAGAGATTGGACTCGG+AGG | - | chr5.4:71573221-71573240 | None:intergenic | 65.0% | |
| CGCTCTGCAGTCGGAGACCT+AGG | + | chr5.4:71572501-71572520 | MS.gene038265:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 71571800 | 71574713 | 71571800 | ID=MS.gene038265 |
| chr5.4 | mRNA | 71571800 | 71574713 | 71571800 | ID=MS.gene038265.t1;Parent=MS.gene038265 |
| chr5.4 | exon | 71571800 | 71572360 | 71571800 | ID=MS.gene038265.t1.exon1;Parent=MS.gene038265.t1 |
| chr5.4 | CDS | 71571800 | 71572360 | 71571800 | ID=cds.MS.gene038265.t1;Parent=MS.gene038265.t1 |
| chr5.4 | exon | 71573033 | 71573792 | 71573033 | ID=MS.gene038265.t1.exon2;Parent=MS.gene038265.t1 |
| chr5.4 | CDS | 71573033 | 71573792 | 71573033 | ID=cds.MS.gene038265.t1;Parent=MS.gene038265.t1 |
| chr5.4 | exon | 71574139 | 71574327 | 71574139 | ID=MS.gene038265.t1.exon3;Parent=MS.gene038265.t1 |
| chr5.4 | CDS | 71574139 | 71574327 | 71574139 | ID=cds.MS.gene038265.t1;Parent=MS.gene038265.t1 |
| chr5.4 | exon | 71574442 | 71574713 | 71574442 | ID=MS.gene038265.t1.exon4;Parent=MS.gene038265.t1 |
| chr5.4 | CDS | 71574442 | 71574713 | 71574442 | ID=cds.MS.gene038265.t1;Parent=MS.gene038265.t1 |
| Gene Sequence |
| Protein sequence |
