AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03836

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03836.t1 MTR_4g049760 71.393 402 80 2 32 433 7 373 0.0 543
MS.gene03836.t1 MTR_4g049790 65.207 434 111 4 1 433 1 395 0.0 520
MS.gene03836.t1 MTR_4g047580 62.470 421 86 6 28 433 1 364 1.21e-171 494
MS.gene03836.t1 MTR_2g088000 41.643 353 157 9 84 430 120 429 1.29e-71 238
MS.gene03836.t1 MTR_2g023930 33.696 368 158 12 60 410 67 365 2.44e-48 175
MS.gene03836.t1 MTR_7g110720 73.684 95 25 0 332 426 171 265 2.80e-46 166
MS.gene03836.t1 MTR_7g110720 73.684 95 25 0 332 426 198 292 3.85e-46 166
MS.gene03836.t1 MTR_4g132430 70.755 106 31 0 328 433 105 210 3.10e-44 159
MS.gene03836.t1 MTR_3g053330 67.327 101 33 0 330 430 231 331 5.34e-44 161
MS.gene03836.t1 MTR_4g132430 70.755 106 31 0 328 433 239 344 3.03e-43 160
MS.gene03836.t1 MTR_2g045360 61.165 103 40 0 335 437 196 298 3.45e-38 144
MS.gene03836.t1 MTR_7g009730 49.007 151 71 1 307 451 170 320 9.08e-38 146
MS.gene03836.t1 MTR_4g094412 49.315 146 70 1 332 473 216 361 1.03e-34 136
MS.gene03836.t1 MTR_4g094412 49.315 146 70 1 332 473 225 370 1.11e-34 136
MS.gene03836.t1 MTR_4g107970 61.728 81 31 0 330 410 158 238 1.48e-31 127
MS.gene03836.t1 MTR_4g107970 61.728 81 31 0 330 410 235 315 2.48e-31 127
MS.gene03836.t1 MTR_3g056100 36.196 163 94 3 320 479 228 383 1.45e-23 103
MS.gene03836.t1 MTR_3g056100 42.857 112 60 2 320 428 241 351 1.55e-23 103
MS.gene03836.t1 MTR_3g056100 36.196 163 94 3 320 479 372 527 2.18e-23 103
MS.gene03836.t1 MTR_3g056100 36.196 163 94 3 320 479 385 540 2.55e-23 103
MS.gene03836.t1 MTR_7g011820 38.971 136 68 3 307 442 377 497 5.96e-23 102
MS.gene03836.t1 MTR_5g044695 69.811 53 16 0 328 380 55 107 4.36e-22 91.3
MS.gene03836.t1 MTR_5g094430 51.190 84 40 1 329 412 209 291 2.52e-21 96.3
MS.gene03836.t1 MTR_5g094430 51.190 84 40 1 329 412 231 313 2.59e-21 96.7
MS.gene03836.t1 MTR_5g042920 44.545 110 52 3 307 412 277 381 3.81e-21 96.3
MS.gene03836.t1 MTR_1g013790 42.391 92 52 1 319 410 71 161 5.26e-21 92.8
MS.gene03836.t1 MTR_6g038890 69.811 53 16 0 328 380 166 218 7.33e-21 91.3
MS.gene03836.t1 MTR_5g094430 51.190 84 40 1 329 412 343 425 8.18e-21 95.9
MS.gene03836.t1 MTR_4g007060 41.667 84 49 0 327 410 105 188 1.06e-20 92.4
MS.gene03836.t1 MTR_2g105060 47.727 88 40 3 329 411 69 155 1.42e-20 91.3
MS.gene03836.t1 MTR_4g007060 41.667 84 49 0 327 410 139 222 1.52e-20 92.8
MS.gene03836.t1 MTR_2g105060 47.727 88 40 3 329 411 144 230 2.02e-20 92.4
MS.gene03836.t1 MTR_3g009470 52.500 80 37 1 333 412 478 556 3.35e-20 94.4
MS.gene03836.t1 MTR_4g094588 36.301 146 81 4 337 473 165 307 4.00e-20 92.0
MS.gene03836.t1 MTR_4g013260 55.405 74 32 1 337 410 323 395 5.24e-20 93.2
MS.gene03836.t1 MTR_4g013260 42.857 84 41 3 336 417 172 250 2.22e-11 66.2
MS.gene03836.t1 MTR_7g109800 43.617 94 48 2 335 428 130 218 8.69e-20 90.1
MS.gene03836.t1 MTR_7g071120 55.263 76 33 1 337 412 311 385 1.24e-19 92.0
MS.gene03836.t1 MTR_3g106060 45.918 98 46 3 327 421 114 207 1.44e-19 89.4
MS.gene03836.t1 MTR_4g082580 48.718 78 39 1 335 412 263 339 2.26e-19 90.5
MS.gene03836.t1 MTR_7g028415 52.113 71 33 1 339 409 82 151 5.13e-19 84.7
MS.gene03836.t1 MTR_7g028710 52.113 71 33 1 339 409 82 151 5.13e-19 84.7
MS.gene03836.t1 MTR_3g104750 50.000 72 35 1 337 408 91 161 5.46e-19 84.7
MS.gene03836.t1 MTR_3g031220 50.649 77 37 1 335 411 350 425 6.10e-19 90.1
MS.gene03836.t1 MTR_3g031220 41.250 80 41 3 335 414 187 260 4.61e-11 65.5
MS.gene03836.t1 MTR_1g086790 47.436 78 40 1 337 414 145 221 6.41e-19 88.2
MS.gene03836.t1 MTR_7g080000 51.316 76 36 1 337 412 419 493 9.05e-19 90.1
MS.gene03836.t1 MTR_8g096730 38.095 105 64 1 309 413 29 132 9.05e-19 83.6
MS.gene03836.t1 MTR_7g080020 50.000 78 38 1 335 412 478 554 1.06e-18 89.7
MS.gene03836.t1 MTR_2g033820 45.000 80 43 1 335 414 188 266 1.15e-18 88.2
MS.gene03836.t1 MTR_1g015140 41.000 100 58 1 309 408 61 159 1.20e-18 83.6
MS.gene03836.t1 MTR_7g079010 50.000 72 35 1 337 408 128 198 2.08e-18 84.3
MS.gene03836.t1 MTR_5g097490 50.000 78 38 1 335 412 237 313 2.10e-18 87.4
MS.gene03836.t1 MTR_5g074400 50.000 78 38 1 335 412 405 481 3.01e-18 88.2
MS.gene03836.t1 MTR_7g109600 41.414 99 53 2 329 425 30 125 3.25e-18 84.7
MS.gene03836.t1 MTR_1g013760 41.304 92 54 0 335 426 125 216 5.49e-18 84.7
MS.gene03836.t1 MTR_1g077780 47.436 78 40 1 335 412 47 123 1.18e-17 80.1
MS.gene03836.t1 MTR_2g032030 46.667 75 40 0 346 420 263 337 2.72e-17 84.7
MS.gene03836.t1 MTR_2g032030 46.667 75 40 0 346 420 263 337 3.96e-17 84.0
MS.gene03836.t1 MTR_4g122530 46.053 76 40 1 336 411 194 268 5.02e-17 83.6
MS.gene03836.t1 MTR_8g028565 49.333 75 38 0 346 420 151 225 7.56e-17 82.0
MS.gene03836.t1 MTR_7g100510 44.444 81 44 1 330 410 341 420 2.77e-16 81.3
MS.gene03836.t1 MTR_7g079040 48.000 75 39 0 346 420 150 224 2.78e-16 80.5
MS.gene03836.t1 MTR_8g098945 47.222 72 38 0 349 420 128 199 3.57e-16 79.0
MS.gene03836.t1 MTR_1g009613 46.512 86 44 1 334 417 244 329 5.17e-16 79.7
MS.gene03836.t1 MTR_8g092010 45.946 74 39 1 337 410 95 167 5.71e-16 76.6
MS.gene03836.t1 MTR_8g087000 48.485 66 34 0 347 412 73 138 5.89e-16 77.8
MS.gene03836.t1 MTR_8g087000 48.485 66 34 0 347 412 74 139 5.93e-16 77.8
MS.gene03836.t1 MTR_2g024350 44.156 77 43 0 345 421 3 79 6.35e-16 77.4
MS.gene03836.t1 MTR_5g043880 46.667 75 39 1 333 407 107 180 7.61e-16 78.2
MS.gene03836.t1 MTR_5g091390 43.590 78 43 1 337 414 144 220 9.31e-16 78.6
MS.gene03836.t1 MTR_2g083870 50.000 72 34 1 341 410 71 142 1.64e-15 77.0
MS.gene03836.t1 MTR_3g095040 45.455 77 41 1 334 410 102 177 2.91e-15 75.1
MS.gene03836.t1 MTR_1g099600 38.542 96 54 1 330 420 160 255 4.16e-15 76.6
MS.gene03836.t1 MTR_2g016770 48.438 64 33 0 347 410 32 95 6.11e-15 74.3
MS.gene03836.t1 MTR_2g016770 48.438 64 33 0 347 410 24 87 7.21e-15 73.9
MS.gene03836.t1 MTR_2g024380 44.156 77 43 0 345 421 246 322 8.07e-15 77.0
MS.gene03836.t1 MTR_4g130900 41.758 91 52 1 324 414 333 422 1.14e-14 76.6
MS.gene03836.t1 MTR_3g095080 39.362 94 55 2 335 428 129 220 2.46e-14 72.8
MS.gene03836.t1 MTR_4g094908 50.000 62 31 0 351 412 267 328 2.91e-14 74.3
MS.gene03836.t1 MTR_8g007270 44.304 79 43 1 329 407 133 210 3.80e-14 72.4
MS.gene03836.t1 MTR_5g016610 51.667 60 29 0 350 409 199 258 3.83e-14 73.2
MS.gene03836.t1 MTR_3g095080 43.529 85 46 2 337 421 155 237 4.85e-14 72.4
MS.gene03836.t1 MTR_1g078260 48.611 72 35 2 337 407 234 304 5.91e-14 74.3
MS.gene03836.t1 MTR_1g070455 52.632 57 27 0 351 407 294 350 6.09e-14 73.6
MS.gene03836.t1 MTR_6g086555 36.283 113 70 2 334 445 190 301 1.13e-13 73.2
MS.gene03836.t1 MTR_4g127040 43.421 76 41 1 334 407 227 302 6.92e-13 70.1
MS.gene03836.t1 MTR_8g092140 51.667 60 28 1 348 407 158 216 7.71e-13 68.6
MS.gene03836.t1 MTR_4g007060 39.344 61 37 0 327 387 139 199 1.52e-11 64.7
MS.gene03836.t1 MTR_3g108960 33.333 96 57 1 312 407 283 371 2.38e-11 65.9
MS.gene03836.t1 MTR_3g031220 41.250 80 41 3 335 414 187 260 3.07e-11 65.5
MS.gene03836.t1 MTR_0117s0040 30.841 107 65 2 301 407 34 131 3.21e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03836.t1 AT4G04450 38.690 336 153 7 104 432 85 374 6.35e-57 197
MS.gene03836.t1 AT4G04450 38.037 326 149 7 114 432 1 280 7.66e-53 184
MS.gene03836.t1 AT1G62300 70.093 107 32 0 329 435 291 397 1.34e-41 156
MS.gene03836.t1 AT4G22070 73.171 82 22 0 329 410 276 357 1.18e-39 150
MS.gene03836.t1 AT4G22070 73.171 82 22 0 329 410 276 357 1.18e-39 150
MS.gene03836.t1 AT4G22070 73.171 82 22 0 329 410 276 357 1.18e-39 150
MS.gene03836.t1 AT4G22070 73.171 82 22 0 329 410 276 357 1.18e-39 150
MS.gene03836.t1 AT1G68150 46.795 156 58 3 335 472 220 368 5.42e-39 145
MS.gene03836.t1 AT4G01720 46.358 151 74 2 265 410 151 299 5.05e-37 142
MS.gene03836.t1 AT5G15130 65.556 90 31 0 335 424 170 259 6.66e-37 142
MS.gene03836.t1 AT5G15130 65.556 90 31 0 335 424 212 301 1.01e-36 142
MS.gene03836.t1 AT1G69810 57.282 103 43 1 323 424 118 220 3.75e-32 125
MS.gene03836.t1 AT1G69810 57.282 103 43 1 323 424 176 278 4.82e-32 127
MS.gene03836.t1 AT1G18860 31.908 304 160 7 138 428 48 317 8.44e-32 128
MS.gene03836.t1 AT4G26640 54.651 86 34 2 331 412 182 266 5.18e-23 100
MS.gene03836.t1 AT4G26640 54.651 86 34 2 331 412 182 266 5.18e-23 100
MS.gene03836.t1 AT4G26640 54.651 86 34 2 331 412 182 266 5.18e-23 100
MS.gene03836.t1 AT4G26640 54.651 86 34 2 331 412 182 266 5.18e-23 100
MS.gene03836.t1 AT4G26640 54.651 86 34 2 331 412 286 370 1.47e-22 100
MS.gene03836.t1 AT4G26640 54.651 86 34 2 331 412 318 402 1.61e-22 100
MS.gene03836.t1 AT4G26640 54.651 86 34 2 331 412 358 442 1.79e-22 101
MS.gene03836.t1 AT5G13080 53.425 73 33 1 337 409 54 125 3.60e-21 90.1
MS.gene03836.t1 AT1G13960 51.282 78 37 1 333 410 239 315 7.92e-21 94.4
MS.gene03836.t1 AT1G80840 46.154 78 40 1 336 411 130 207 1.09e-20 92.8
MS.gene03836.t1 AT1G13960 51.282 78 37 1 333 410 392 468 1.69e-20 94.7
MS.gene03836.t1 AT4G18170 43.119 109 61 1 303 411 125 232 3.39e-20 91.7
MS.gene03836.t1 AT5G07100 48.864 88 40 2 327 414 122 204 4.29e-20 89.4
MS.gene03836.t1 AT5G07100 48.864 88 40 2 327 414 122 204 4.29e-20 89.4
MS.gene03836.t1 AT5G07100 48.864 88 40 2 327 414 122 204 4.29e-20 89.4
MS.gene03836.t1 AT5G07100 48.864 88 40 2 327 414 122 204 4.29e-20 89.4
MS.gene03836.t1 AT5G41570 53.425 73 33 1 336 408 84 155 4.40e-20 88.2
MS.gene03836.t1 AT1G64000 52.632 76 35 1 333 408 97 171 6.33e-20 88.2
MS.gene03836.t1 AT2G03340 40.517 116 59 2 297 412 371 476 8.19e-20 92.8
MS.gene03836.t1 AT1G29860 38.136 118 60 4 335 445 121 232 1.01e-19 89.7
MS.gene03836.t1 AT5G07100 48.864 88 40 2 327 414 215 297 1.05e-19 90.1
MS.gene03836.t1 AT2G30250 51.282 78 37 1 337 414 315 391 1.23e-19 91.3
MS.gene03836.t1 AT5G56270 51.250 80 38 1 333 412 470 548 1.54e-19 92.4
MS.gene03836.t1 AT5G46350 44.211 95 52 1 337 431 170 263 3.73e-19 89.0
MS.gene03836.t1 AT4G31800 41.414 99 53 1 335 428 91 189 4.73e-19 87.0
MS.gene03836.t1 AT2G38470 51.316 76 36 1 337 412 349 423 5.55e-19 90.1
MS.gene03836.t1 AT4G31800 41.414 99 53 1 335 428 156 254 6.83e-19 87.8
MS.gene03836.t1 AT5G49520 45.000 80 43 1 335 414 206 284 9.21e-19 88.6
MS.gene03836.t1 AT3G01080 45.455 88 44 2 326 410 317 403 1.17e-18 89.0
MS.gene03836.t1 AT3G01080 45.455 88 44 2 326 410 279 365 1.30e-18 88.6
MS.gene03836.t1 AT2G25000 29.143 175 113 1 250 413 14 188 1.47e-18 85.5
MS.gene03836.t1 AT2G25000 37.500 104 65 0 310 413 63 166 2.22e-18 84.7
MS.gene03836.t1 AT2G25000 37.500 104 65 0 310 413 63 166 2.22e-18 84.7
MS.gene03836.t1 AT5G52830 48.052 77 40 0 344 420 159 235 3.31e-18 86.3
MS.gene03836.t1 AT2G25000 37.500 104 65 0 310 413 106 209 3.94e-18 84.7
MS.gene03836.t1 AT5G26170 50.000 72 35 1 336 407 99 169 4.00e-18 82.4
MS.gene03836.t1 AT3G01970 52.778 72 33 1 336 407 51 121 4.65e-18 81.3
MS.gene03836.t1 AT2G47260 40.000 115 56 3 335 437 159 272 9.28e-18 84.7
MS.gene03836.t1 AT2G46130 50.000 72 35 1 337 408 17 87 9.63e-18 79.3
MS.gene03836.t1 AT2G04880 41.758 91 52 1 320 410 253 342 2.84e-17 84.7
MS.gene03836.t1 AT2G04880 48.529 68 33 2 346 413 107 172 1.41e-11 67.0
MS.gene03836.t1 AT4G26440 38.710 124 69 2 337 454 359 481 3.16e-17 85.1
MS.gene03836.t1 AT2G04880 41.758 91 52 1 320 410 277 366 3.96e-17 84.3
MS.gene03836.t1 AT2G04880 48.529 68 33 2 346 413 107 172 1.79e-11 66.6
MS.gene03836.t1 AT2G34830 43.529 85 47 1 334 417 198 282 5.19e-17 83.6
MS.gene03836.t1 AT3G62340 36.800 125 71 3 336 458 104 222 6.27e-17 81.3
MS.gene03836.t1 AT2G34830 43.529 85 47 1 334 417 207 291 6.48e-17 83.6
MS.gene03836.t1 AT1G30650 42.353 85 48 1 334 417 200 284 1.91e-16 82.0
MS.gene03836.t1 AT1G29280 47.143 70 37 0 341 410 65 134 2.22e-16 79.3
MS.gene03836.t1 AT3G58710 40.426 94 53 2 320 413 44 134 3.32e-16 79.3
MS.gene03836.t1 AT3G58710 40.426 94 53 2 320 413 43 133 3.37e-16 79.3
MS.gene03836.t1 AT4G30935 37.719 114 66 2 318 431 299 407 3.82e-16 81.3
MS.gene03836.t1 AT1G55600 47.368 76 39 1 337 412 294 368 3.88e-16 81.3
MS.gene03836.t1 AT4G23550 46.154 78 42 0 345 422 135 212 4.73e-16 79.3
MS.gene03836.t1 AT5G64810 50.704 71 34 1 337 407 97 166 5.33e-16 77.0
MS.gene03836.t1 AT4G01250 45.455 77 42 0 344 420 122 198 7.41e-16 78.6
MS.gene03836.t1 AT1G69310 44.000 75 41 1 333 407 130 203 9.27e-16 78.2
MS.gene03836.t1 AT1G69310 44.000 75 41 1 333 407 130 203 9.27e-16 78.2
MS.gene03836.t1 AT1G69310 44.000 75 41 1 333 407 130 203 9.27e-16 78.2
MS.gene03836.t1 AT2G23320 43.210 81 39 1 329 409 226 299 2.30e-15 77.4
MS.gene03836.t1 AT2G30590 45.238 84 41 2 335 413 294 377 4.27e-15 77.4
MS.gene03836.t1 AT5G45050 34.328 134 82 2 300 433 997 1124 1.56e-14 77.0
MS.gene03836.t1 AT5G45050 34.328 134 82 2 300 433 1108 1235 1.71e-14 77.0
MS.gene03836.t1 AT5G45050 36.441 118 69 2 300 417 1136 1247 1.95e-14 77.0
MS.gene03836.t1 AT2G24570 43.750 80 38 1 328 407 228 300 2.00e-14 74.7
MS.gene03836.t1 AT2G21900 30.435 115 74 2 299 413 63 171 4.68e-14 71.6
MS.gene03836.t1 AT4G24240 51.667 60 29 0 350 409 281 340 6.76e-14 73.6
MS.gene03836.t1 AT4G31550 41.772 79 39 1 329 407 231 302 7.45e-14 73.2
MS.gene03836.t1 AT4G31550 41.772 79 39 1 329 407 232 303 7.66e-14 73.2
MS.gene03836.t1 AT5G28650 54.717 53 24 0 355 407 267 319 8.31e-14 72.8
MS.gene03836.t1 AT2G44745 41.772 79 45 1 329 407 124 201 8.97e-14 70.9
MS.gene03836.t1 AT4G39410 46.575 73 38 1 335 407 208 279 1.03e-13 72.4
MS.gene03836.t1 AT2G46130 45.833 72 34 2 337 408 17 83 1.21e-13 67.4
MS.gene03836.t1 AT3G04670 54.717 53 24 0 355 407 267 319 1.64e-13 72.0
MS.gene03836.t1 AT2G37260 50.769 65 31 1 345 409 262 325 3.92e-13 71.2
MS.gene03836.t1 AT2G37260 50.769 65 31 1 345 409 264 327 4.01e-13 71.2
MS.gene03836.t1 AT2G37260 50.769 65 31 1 345 409 344 407 5.41e-13 71.2
MS.gene03836.t1 AT5G45260 41.935 93 48 2 334 424 1196 1284 1.10e-12 71.2

Find 92 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATGAATACACCATCTTTAT+TGG 0.072003 4.1:+44755342 MS.gene03836:CDS
GAAGTTTCTGATGGAAAATT+TGG 0.152030 4.1:+44757088 MS.gene03836:CDS
AGTAGAGTTTGATTTCTTTA+AGG 0.190874 4.1:+44755258 MS.gene03836:CDS
CTTTAACTTCCTTAAACTTA+TGG 0.217911 4.1:-44756946 None:intergenic
CCTAACTGGTCCTGACTTCT+AGG 0.238769 4.1:-44757352 None:intergenic
TGCTGGATTGACTACTATTA+AGG 0.246157 4.1:+44757165 MS.gene03836:CDS
GATGCTAGACCATAAGTTTA+AGG 0.248841 4.1:+44756937 MS.gene03836:CDS
ATTAAGGTTAAGGAAGTTAA+AGG 0.251785 4.1:+44757181 MS.gene03836:CDS
TCAAGGTTGTTTGTGTCTTC+AGG 0.260536 4.1:-44755118 None:intergenic
CTGCAAAGATAATAAGATTT+AGG 0.271571 4.1:-44757666 None:intergenic
GTCTTGTTGTCTTCTGAATT+AGG 0.286460 4.1:-44755610 None:intergenic
CGAGCTTGAACGAAAGAAAA+TGG 0.321409 4.1:+44756838 MS.gene03836:CDS
AATAAGGTTAAGGAAGTTAA+AGG 0.322766 4.1:+44757061 MS.gene03836:CDS
GGAAACGAGTTGTCATTAAC+TGG 0.351498 4.1:-44755097 None:intergenic
AAAAGGAAATTTGTTGATGC+TGG 0.355901 4.1:+44757148 MS.gene03836:CDS
TCTTGGATCGACTACTAATA+AGG 0.363882 4.1:+44757045 MS.gene03836:CDS
GAGATGGGATTAGAGAGATT+TGG 0.369938 4.1:-44755225 None:intergenic
AACTGAGAATGGTGGAGTAC+TGG 0.379312 4.1:+44757009 MS.gene03836:CDS
TCAACAGCTTGGTCCCATTC+CGG 0.379544 4.1:+44755537 MS.gene03836:intron
TCTTCTACTGATAATAATAA+TGG 0.379622 4.1:+44759132 MS.gene03836:CDS
ATTGACTACTATTAAGGTTA+AGG 0.403986 4.1:+44757171 MS.gene03836:CDS
TTTCAGATGGCTATTCTTCA+AGG 0.408471 4.1:+44756815 MS.gene03836:intron
GGATGTCAATGGAGAAAGTA+TGG 0.409848 4.1:+44757615 MS.gene03836:CDS
AGCTAGATCAGAAGAAACTA+TGG 0.417776 4.1:+44757489 MS.gene03836:CDS
GATCTACTATTGACTAAGAA+AGG 0.422463 4.1:-44755190 None:intergenic
ATATGAATATGATCATTGTC+AGG 0.426352 4.1:-44755322 None:intergenic
CTTTGGCTGCAGTAGGTAAA+GGG 0.427084 4.1:-44758670 None:intergenic
CTACTAGTATTGGTAGTAAC+CGG 0.438929 4.1:-44755556 None:intergenic
ACCTACTGCAGCCAAAGAAA+TGG 0.440244 4.1:+44758676 MS.gene03836:CDS
TCTTTGGCTGCAGTAGGTAA+AGG 0.441950 4.1:-44758671 None:intergenic
ATCGACTACTAATAAGGTTA+AGG 0.442162 4.1:+44757051 MS.gene03836:CDS
TCTACTCTTGTTTCATGAGA+TGG 0.448974 4.1:-44755241 None:intergenic
TAACATCTACATTCTTACTA+AGG 0.451173 4.1:-44757417 None:intergenic
CTACTCTTGTTTCATGAGAT+GGG 0.455113 4.1:-44755240 None:intergenic
CCTAGAAGTCAGGACCAGTT+AGG 0.461756 4.1:+44757352 MS.gene03836:CDS
ACTGAGAATGGTGGAGTACT+GGG 0.463560 4.1:+44757010 MS.gene03836:CDS
AGCTTTAGTTCCAATAAAGA+TGG 0.465782 4.1:-44755352 None:intergenic
GCTATCATTGTGATTTCCTT+CGG 0.473387 4.1:-44759166 None:intergenic
ACAAGATCTTTGCATTGCCT+TGG 0.476445 4.1:-44757268 None:intergenic
TGGTTGCTCAGTCCGAAAAC+AGG 0.478137 4.1:+44757698 MS.gene03836:CDS
AATGAGAAAACCTAGAAGTC+AGG 0.488123 4.1:+44757342 MS.gene03836:CDS
CTGGGGCCGAGGAAAGATCT+TGG 0.492860 4.1:+44757028 MS.gene03836:CDS
ATGGTGGAGAATCAATGAAA+AGG 0.509688 4.1:+44757131 MS.gene03836:CDS
AAGCATCGAGGTTGCTTCGA+AGG 0.510775 4.1:+44757387 MS.gene03836:CDS
TGGGACTAAATTTCAACTCA+AGG 0.516877 4.1:-44755135 None:intergenic
GAAACTCTTGCTTTCACCAA+TGG 0.517112 4.1:-44757460 None:intergenic
TAGTAGTGATCAATCTATGA+TGG 0.520634 4.1:+44755573 MS.gene03836:CDS
TAATAACATTACCTCCCTCT+TGG 0.525706 4.1:-44755632 None:intergenic
TATCTTTGCAGCATGGCCCA+TGG 0.528432 4.1:+44757678 MS.gene03836:CDS
ATCTTATTATCTTTGCAGCA+TGG 0.533638 4.1:+44757671 MS.gene03836:CDS
ACAAGGAAGGAGTGTTCTTG+TGG 0.534307 4.1:-44758755 None:intergenic
ATCTACTATTGACTAAGAAA+GGG 0.541952 4.1:-44755189 None:intergenic
GAGAAAGAGGAAACTGAGAA+TGG 0.542117 4.1:+44756998 MS.gene03836:intron
GTTGTAATCACAACTTATGA+AGG 0.543545 4.1:+44758635 MS.gene03836:CDS
GTATTGGTAGTAACCGGAAT+GGG 0.543800 4.1:-44755550 None:intergenic
AGATTGATCACTACTAGTAT+TGG 0.549551 4.1:-44755566 None:intergenic
GATAATAAGATTTAGGACAC+GGG 0.551219 4.1:-44757659 None:intergenic
ATGGTGGAGTACTGGGGCCG+AGG 0.552977 4.1:+44757017 MS.gene03836:CDS
AAAGAGGAAACTGAGAATGG+TGG 0.555680 4.1:+44757001 MS.gene03836:CDS
ATTTAGTCCCAACGAAAACA+TGG 0.557013 4.1:+44755147 MS.gene03836:CDS
AAAGGACAAGAAGTTTCTGA+TGG 0.557815 4.1:+44757079 MS.gene03836:CDS
CAGAAGACAACAAGACCAAG+AGG 0.560043 4.1:+44755617 MS.gene03836:CDS
AATAACAATGGTAATATCAC+AGG 0.561708 4.1:+44759210 MS.gene03836:CDS
CAAGGAAGGAGTGTTCTTGT+GGG 0.564200 4.1:-44758754 None:intergenic
TTATTGTGTTAGATCACTGA+TGG 0.564668 4.1:+44757594 MS.gene03836:intron
TAGCAACACTAATGATCAGA+AGG 0.581418 4.1:+44759233 MS.gene03836:CDS
GCCATTTCTTTGGCTGCAGT+AGG 0.583103 4.1:-44758677 None:intergenic
AGCAACAATAATGTCACAGA+AGG 0.584455 4.1:+44759186 MS.gene03836:CDS
TATGAATATGATCATTGTCA+GGG 0.591183 4.1:-44755321 None:intergenic
AGATAATAAGATTTAGGACA+CGG 0.591778 4.1:-44757660 None:intergenic
ATGATCATTGTCAGGGACAG+AGG 0.594495 4.1:-44755314 None:intergenic
ATGGTGGAGAGTTGGTGCCA+AGG 0.595504 4.1:+44757251 MS.gene03836:CDS
GTCGATCCAAGATCTTTCCT+CGG 0.596268 4.1:-44757034 None:intergenic
TTCAAACTTAATAGGTACAA+AGG 0.596299 4.1:+44758594 MS.gene03836:intron
AGTATTGGTAGTAACCGGAA+TGG 0.599485 4.1:-44755551 None:intergenic
TACTAATGCTGAGACTGCGA+TGG 0.603405 4.1:+44757297 MS.gene03836:CDS
ACTTGAGAATGGTGGAGAGT+TGG 0.607530 4.1:+44757243 MS.gene03836:CDS
ATTAACTGGAGTTGAAGCCA+TGG 0.617430 4.1:-44755083 None:intergenic
AGATCACTGATGGATGTCAA+TGG 0.621939 4.1:+44757604 MS.gene03836:intron
AAGTCAGGACCAGTTAGGAT+CGG 0.622675 4.1:+44757357 MS.gene03836:CDS
AATGGCAACAATGTCACCGA+AGG 0.626879 4.1:+44759150 MS.gene03836:CDS
TGGCTGCAGTAGGTAAAGGG+TGG 0.628113 4.1:-44758667 None:intergenic
AAATACTTGAAGAACAAGGA+AGG 0.629779 4.1:-44758768 None:intergenic
GTCACAGAAGGCAATAACAA+TGG 0.641704 4.1:+44759198 MS.gene03836:CDS
TGATAATGTTGAGACACCAT+TGG 0.665951 4.1:+44757444 MS.gene03836:CDS
AGACAACAAGACCAAGAGGG+AGG 0.676991 4.1:+44755621 MS.gene03836:CDS
AGAAGACAACAAGACCAAGA+GGG 0.683090 4.1:+44755618 MS.gene03836:CDS
CTGAGAATGGTGGAGTACTG+GGG 0.687268 4.1:+44757011 MS.gene03836:CDS
GTTGAAATACTTGAAGAACA+AGG 0.687606 4.1:-44758772 None:intergenic
TTTCTCGAAACACATCCGCA+TGG 0.694478 4.1:-44756912 None:intergenic
GAACATATTACAATACCATG+CGG 0.739509 4.1:+44756897 MS.gene03836:CDS
ATCGGCGATGAAAAGCATCG+AGG 0.778036 4.1:+44757375 MS.gene03836:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr4.1:44755871-44755852 None:intergenic 0.0%
!! ACAATAAAAATAAATTCTTT+AGG - chr4.1:44757581-44757600 None:intergenic 10.0%
!! TGAATAAATAAATTCAAATT+AGG - chr4.1:44756361-44756380 None:intergenic 10.0%
!! TGTATTATACTTATAAATAT+AGG - chr4.1:44756009-44756028 None:intergenic 10.0%
!! TAATACAATTCAAACTTAAT+AGG + chr4.1:44758586-44758605 MS.gene03836:intron 15.0%
!! TAGGTTAATTAAAATACTTA+TGG + chr4.1:44758533-44758552 MS.gene03836:intron 15.0%
!! TATAATGAGATATTGAATTA+TGG - chr4.1:44755390-44755409 None:intergenic 15.0%
!! TTAACATGGTAATATAAAAT+TGG - chr4.1:44756164-44756183 None:intergenic 15.0%
!!! ATATTTTTTTCACAAATAAG+AGG - chr4.1:44756587-44756606 None:intergenic 15.0%
!!! ATGCATATTTTGATTTTTAA+TGG - chr4.1:44758396-44758415 None:intergenic 15.0%
!!! TAGAATATTTTTATGTGATT+TGG + chr4.1:44756559-44756578 MS.gene03836:intron 15.0%
!! AAAATGATGATTAAATGACA+AGG - chr4.1:44758162-44758181 None:intergenic 20.0%
!! AAAGGAAAATAATTCTTTGA+TGG + chr4.1:44756965-44756984 MS.gene03836:intron 20.0%
!! ATAACACTATTAATATGATG+TGG + chr4.1:44756654-44756673 MS.gene03836:intron 20.0%
!! ATTATCTATGGTTGAAATAA+GGG - chr4.1:44756075-44756094 None:intergenic 20.0%
!! GAATGCATAAATATTATCTA+TGG - chr4.1:44756087-44756106 None:intergenic 20.0%
!! TAAAATGTAACCATATGTAT+TGG - chr4.1:44756454-44756473 None:intergenic 20.0%
!! TAATTTCTTTAAATTCAGCT+AGG - chr4.1:44755661-44755680 None:intergenic 20.0%
!! TATTATCTATGGTTGAAATA+AGG - chr4.1:44756076-44756095 None:intergenic 20.0%
!! TCATATATGTTAATTGATGT+AGG + chr4.1:44756211-44756230 MS.gene03836:intron 20.0%
!! TCTTCTACTGATAATAATAA+TGG + chr4.1:44759132-44759151 MS.gene03836:CDS 20.0%
!! TTCGTATTCATTAATTAACA+TGG - chr4.1:44756178-44756197 None:intergenic 20.0%
!!! AAAGGAAAAGAAGTTTTTAA+TGG + chr4.1:44757199-44757218 MS.gene03836:CDS 20.0%
!!! AATTTTGATTGGTTTTGATT+AGG - chr4.1:44758943-44758962 None:intergenic 20.0%
! AAAAAGAGAATAAAGAATGG+TGG + chr4.1:44757115-44757134 MS.gene03836:CDS 25.0%
! AAAGGGAAAAAAATGTTCAT+CGG - chr4.1:44755687-44755706 None:intergenic 25.0%
! AATAAATTCTTTAGGCGAAA+AGG - chr4.1:44757573-44757592 None:intergenic 25.0%
! AATAACAATGGTAATATCAC+AGG + chr4.1:44759210-44759229 MS.gene03836:CDS 25.0%
! AATAAGGTTAAGGAAGTTAA+AGG + chr4.1:44757061-44757080 MS.gene03836:CDS 25.0%
! ATATGAATATGATCATTGTC+AGG - chr4.1:44755325-44755344 None:intergenic 25.0%
! ATTAAGGTTAAGGAAGTTAA+AGG + chr4.1:44757181-44757200 MS.gene03836:CDS 25.0%
! ATTGACTACTATTAAGGTTA+AGG + chr4.1:44757171-44757190 MS.gene03836:CDS 25.0%
! CACAAAAAGAGAATAAAGAA+TGG + chr4.1:44757112-44757131 MS.gene03836:CDS 25.0%
! CATAAGTTTAAGGAAGTTAA+AGG + chr4.1:44756947-44756966 MS.gene03836:intron 25.0%
! CTGCAAAGATAATAAGATTT+AGG - chr4.1:44757669-44757688 None:intergenic 25.0%
! GTATAATCAAGTGTAATAGT+TGG - chr4.1:44758820-44758839 None:intergenic 25.0%
! TAAATGCATGAATTATGGAA+TGG - chr4.1:44758353-44758372 None:intergenic 25.0%
! TAACATCTACATTCTTACTA+AGG - chr4.1:44757420-44757439 None:intergenic 25.0%
! TAGACATTCTTTAGATTTGA+AGG + chr4.1:44755747-44755766 MS.gene03836:intron 25.0%
! TATGAATACACCATCTTTAT+TGG + chr4.1:44755342-44755361 MS.gene03836:CDS 25.0%
! TATGAATATGATCATTGTCA+GGG - chr4.1:44755324-44755343 None:intergenic 25.0%
! TCAAAATATGCATTGAAGTT+TGG + chr4.1:44758403-44758422 MS.gene03836:intron 25.0%
! TGGAAAATTTAAAGAGAAAG+AGG + chr4.1:44756985-44757004 MS.gene03836:intron 25.0%
! TTATCTATGGTTGAAATAAG+GGG - chr4.1:44756074-44756093 None:intergenic 25.0%
! TTCAAACTTAATAGGTACAA+AGG + chr4.1:44758594-44758613 MS.gene03836:intron 25.0%
!! AGATAATAAGATTTAGGACA+CGG - chr4.1:44757663-44757682 None:intergenic 25.0%
!! AGTAGAGTTTGATTTCTTTA+AGG + chr4.1:44755258-44755277 MS.gene03836:CDS 25.0%
!! ATCTACTATTGACTAAGAAA+GGG - chr4.1:44755192-44755211 None:intergenic 25.0%
!! CAAAACCAATCAAAATTTTC+TGG + chr4.1:44758946-44758965 MS.gene03836:intron 25.0%
!! CTTTAACTTCCTTAAACTTA+TGG - chr4.1:44756949-44756968 None:intergenic 25.0%
!!! AAAATCACTCAATTTTGACT+CGG - chr4.1:44755717-44755736 None:intergenic 25.0%
!!! TTATTTTTTCTTCAACAGCT+TGG + chr4.1:44755526-44755545 MS.gene03836:intron 25.0%
AAATACTTGAAGAACAAGGA+AGG - chr4.1:44758771-44758790 None:intergenic 30.0%
AAGAAAAAGAGACTTGAGAA+TGG + chr4.1:44757232-44757251 MS.gene03836:CDS 30.0%
AAGGGAAAAAAATGTTCATC+GGG - chr4.1:44755686-44755705 None:intergenic 30.0%
ACCCATATAGACTACAATAT+GGG + chr4.1:44755808-44755827 MS.gene03836:intron 30.0%
ACTATGATCTAGGAAACAAT+CGG - chr4.1:44758117-44758136 None:intergenic 30.0%
AGATTGATCACTACTAGTAT+TGG - chr4.1:44755569-44755588 None:intergenic 30.0%
ATAATGCGAAAGCAATCATT+AGG - chr4.1:44758049-44758068 None:intergenic 30.0%
ATCATCGCAAAAAATAGCTT+TGG - chr4.1:44756775-44756794 None:intergenic 30.0%
ATCGACTACTAATAAGGTTA+AGG + chr4.1:44757051-44757070 MS.gene03836:CDS 30.0%
ATCTTATTATCTTTGCAGCA+TGG + chr4.1:44757671-44757690 MS.gene03836:CDS 30.0%
ATGCGTAAATGCATGAATTA+TGG - chr4.1:44758358-44758377 None:intergenic 30.0%
CAACAAACTCAAATCCAAAA+TGG + chr4.1:44758499-44758518 MS.gene03836:intron 30.0%
CACGTGAATAAAACATGTTA+AGG - chr4.1:44756743-44756762 None:intergenic 30.0%
CCAACAAAAACAAAATGCAT+TGG - chr4.1:44756681-44756700 None:intergenic 30.0%
GAACATATTACAATACCATG+CGG + chr4.1:44756897-44756916 MS.gene03836:CDS 30.0%
GAAGTTTCTGATGGAAAATT+TGG + chr4.1:44757088-44757107 MS.gene03836:CDS 30.0%
GACAAAGATGCAAGAAAATT+TGG - chr4.1:44759063-44759082 None:intergenic 30.0%
GTACTGCTAATAATTGTGAA+GGG - chr4.1:44758999-44759018 None:intergenic 30.0%
GTTGAAATACTTGAAGAACA+AGG - chr4.1:44758775-44758794 None:intergenic 30.0%
GTTGTAATCACAACTTATGA+AGG + chr4.1:44758635-44758654 MS.gene03836:CDS 30.0%
TAATGCGAAAGCAATCATTA+GGG - chr4.1:44758048-44758067 None:intergenic 30.0%
TAATGGTCAAAGTTGTGTAT+GGG + chr4.1:44757947-44757966 MS.gene03836:intron 30.0%
TAGTAGTGATCAATCTATGA+TGG + chr4.1:44755573-44755592 MS.gene03836:CDS 30.0%
TCTATGCTAGAATATGGATT+TGG + chr4.1:44758320-44758339 MS.gene03836:intron 30.0%
TTAATGGTCAAAGTTGTGTA+TGG + chr4.1:44757946-44757965 MS.gene03836:intron 30.0%
TTATTGTGTTAGATCACTGA+TGG + chr4.1:44757594-44757613 MS.gene03836:intron 30.0%
! AACCATATGTATTGGTGATT+CGG - chr4.1:44756446-44756465 None:intergenic 30.0%
! AGAAGAAAGTTACCTGTTTT+CGG - chr4.1:44757713-44757732 None:intergenic 30.0%
! AGCTTTAGTTCCAATAAAGA+TGG - chr4.1:44755355-44755374 None:intergenic 30.0%
! CATGTTTCTATGCTAGAATA+TGG + chr4.1:44758314-44758333 MS.gene03836:intron 30.0%
! CTTCACTACTCAAATTTTCT+GGG + chr4.1:44756397-44756416 MS.gene03836:intron 30.0%
! GATAATAAGATTTAGGACAC+GGG - chr4.1:44757662-44757681 None:intergenic 30.0%
! GATCTACTATTGACTAAGAA+AGG - chr4.1:44755193-44755212 None:intergenic 30.0%
! TCTTCACTACTCAAATTTTC+TGG + chr4.1:44756396-44756415 MS.gene03836:intron 30.0%
! TTCTTTGAACTGTTTTCAGA+TGG + chr4.1:44756802-44756821 MS.gene03836:intron 30.0%
!! AAAAGGAAATTTGTTGATGC+TGG + chr4.1:44757148-44757167 MS.gene03836:CDS 30.0%
!! AAAATTTGGATTAGCAGCAA+TGG - chr4.1:44759049-44759068 None:intergenic 30.0%
!! AGAAACATGAGCTTTGAAAA+TGG - chr4.1:44758303-44758322 None:intergenic 30.0%
!! GTAGTCCAGAAAATTTTGAT+TGG - chr4.1:44758954-44758973 None:intergenic 30.0%
!! TTGCGACATGTATTTTGAAA+CGG - chr4.1:44757764-44757783 None:intergenic 30.0%
!!! AGTTGTTTTTGCCATTTCTT+TGG - chr4.1:44758690-44758709 None:intergenic 30.0%
!!! CCAATGCATTTTGTTTTTGT+TGG + chr4.1:44756678-44756697 MS.gene03836:intron 30.0%
!!! GGTTTTGATTAGGTATTTGA+GGG - chr4.1:44758933-44758952 None:intergenic 30.0%
!!! GTCAGTTTTATTGTTTTGTC+CGG + chr4.1:44756512-44756531 MS.gene03836:intron 30.0%
!!! TAGAGAGATTTGGTTTTCAT+TGG - chr4.1:44755218-44755237 None:intergenic 30.0%
!!! TGGTTTTGATTAGGTATTTG+AGG - chr4.1:44758934-44758953 None:intergenic 30.0%
AAAAAGAGACTTGAGAATGG+TGG + chr4.1:44757235-44757254 MS.gene03836:CDS 35.0%
AAAGGACAAGAAGTTTCTGA+TGG + chr4.1:44757079-44757098 MS.gene03836:CDS 35.0%
AATGAGAAAACCTAGAAGTC+AGG + chr4.1:44757342-44757361 MS.gene03836:CDS 35.0%
ACAGACATACACATAAACAC+CGG - chr4.1:44756534-44756553 None:intergenic 35.0%
AGCAACAATAATGTCACAGA+AGG + chr4.1:44759186-44759205 MS.gene03836:CDS 35.0%
AGCTAGATCAGAAGAAACTA+TGG + chr4.1:44757489-44757508 MS.gene03836:CDS 35.0%
ATTTAGTCCCAACGAAAACA+TGG + chr4.1:44755147-44755166 MS.gene03836:CDS 35.0%
CATGTTTGTGACTATGATCT+AGG - chr4.1:44758127-44758146 None:intergenic 35.0%
GACCCATATAGACTACAATA+TGG + chr4.1:44755807-44755826 MS.gene03836:intron 35.0%
GATGCTAGACCATAAGTTTA+AGG + chr4.1:44756937-44756956 MS.gene03836:CDS 35.0%
GCCCATATTGTAGTCTATAT+GGG - chr4.1:44755812-44755831 None:intergenic 35.0%
GCTATCATTGTGATTTCCTT+CGG - chr4.1:44759169-44759188 None:intergenic 35.0%
GGTACTGCTAATAATTGTGA+AGG - chr4.1:44759000-44759019 None:intergenic 35.0%
GTTGAAATAAGGGGAAGAAA+AGG - chr4.1:44756065-44756084 None:intergenic 35.0%
TAATAACATTACCTCCCTCT+TGG - chr4.1:44755635-44755654 None:intergenic 35.0%
TACCGAATCACCAATACATA+TGG + chr4.1:44756441-44756460 MS.gene03836:intron 35.0%
TAGCAACACTAATGATCAGA+AGG + chr4.1:44759233-44759252 MS.gene03836:CDS 35.0%
TAGCAGTACCAAATATTGCT+CGG + chr4.1:44759010-44759029 MS.gene03836:intron 35.0%
TATGGACAAAAACTGTCGAA+AGG + chr4.1:44757633-44757652 MS.gene03836:CDS 35.0%
TATTTGATATGCATTGCACG+AGG + chr4.1:44758243-44758262 MS.gene03836:intron 35.0%
TCTTGGATCGACTACTAATA+AGG + chr4.1:44757045-44757064 MS.gene03836:CDS 35.0%
TGCTGGATTGACTACTATTA+AGG + chr4.1:44757165-44757184 MS.gene03836:CDS 35.0%
TGGGACTAAATTTCAACTCA+AGG - chr4.1:44755138-44755157 None:intergenic 35.0%
TTCCATTATTGGTCATACTC+AGG + chr4.1:44759095-44759114 MS.gene03836:intron 35.0%
TTTAATGGTCATCAACGTGA+TGG - chr4.1:44758381-44758400 None:intergenic 35.0%
TTTCAGATGGCTATTCTTCA+AGG + chr4.1:44756815-44756834 MS.gene03836:intron 35.0%
! AAAGGAGTTTGAAACTGATC+TGG - chr4.1:44758871-44758890 None:intergenic 35.0%
! AAGGAGTTTGAAACTGATCT+GGG - chr4.1:44758870-44758889 None:intergenic 35.0%
! ATGGTGGAGAATCAATGAAA+AGG + chr4.1:44757131-44757150 MS.gene03836:CDS 35.0%
! CTACTCTTGTTTCATGAGAT+GGG - chr4.1:44755243-44755262 None:intergenic 35.0%
! GCAAAACTCTGAGAGATTAA+AGG - chr4.1:44758889-44758908 None:intergenic 35.0%
! GTCTTGTTGTCTTCTGAATT+AGG - chr4.1:44755613-44755632 None:intergenic 35.0%
! TCTACTCTTGTTTCATGAGA+TGG - chr4.1:44755244-44755263 None:intergenic 35.0%
! TCTAGGTTTTCTCATTGATG+AGG - chr4.1:44757338-44757357 None:intergenic 35.0%
! TGATAATGTTGAGACACCAT+TGG + chr4.1:44757444-44757463 MS.gene03836:CDS 35.0%
!! ATGTTTTATTCACGTGTGAG+AGG + chr4.1:44756747-44756766 MS.gene03836:intron 35.0%
!! CTACTAGTATTGGTAGTAAC+CGG - chr4.1:44755559-44755578 None:intergenic 35.0%
!! CTGCGACATGTATTTTGAAA+CGG + chr4.1:44757988-44758007 MS.gene03836:intron 35.0%
!! TCTTTAGATTTGAAGGTGTC+TGG + chr4.1:44755754-44755773 MS.gene03836:intron 35.0%
!! TTTGACTCGGTAAAACGAAA+GGG - chr4.1:44755704-44755723 None:intergenic 35.0%
!!! AGAGATTTGGTTTTCATTGG+AGG - chr4.1:44755215-44755234 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+GGG - chr4.1:44758011-44757992 None:intergenic 35.0%
!!! GACATGTATTTTGAAACGGA+TGG + chr4.1:44757992-44758011 MS.gene03836:intron 35.0%
!!! TTTTGACTCGGTAAAACGAA+AGG - chr4.1:44755705-44755724 None:intergenic 35.0%
AAAGAGGAAACTGAGAATGG+TGG + chr4.1:44757001-44757020 MS.gene03836:CDS 40.0%
AATCTCCAGATACTCCACAA+AGG + chr4.1:44758842-44758861 MS.gene03836:intron 40.0%
ACAAGATCTTTGCATTGCCT+TGG - chr4.1:44757271-44757290 None:intergenic 40.0%
AGAAGACAACAAGACCAAGA+GGG + chr4.1:44755618-44755637 MS.gene03836:CDS 40.0%
AGCAGTACCAAATATTGCTC+GGG + chr4.1:44759011-44759030 MS.gene03836:intron 40.0%
ATGGTCGTTGTATCGAAGAT+TGG - chr4.1:44758434-44758453 None:intergenic 40.0%
CGAGCTTGAACGAAAGAAAA+TGG + chr4.1:44756838-44756857 MS.gene03836:CDS 40.0%
GAAACTCTTGCTTTCACCAA+TGG - chr4.1:44757463-44757482 None:intergenic 40.0%
GAGAAAGAGGAAACTGAGAA+TGG + chr4.1:44756998-44757017 MS.gene03836:intron 40.0%
GAGATGGGATTAGAGAGATT+TGG - chr4.1:44755228-44755247 None:intergenic 40.0%
GGAAACGAGTTGTCATTAAC+TGG - chr4.1:44755100-44755119 None:intergenic 40.0%
GGATGTCAATGGAGAAAGTA+TGG + chr4.1:44757615-44757634 MS.gene03836:CDS 40.0%
GGCCCATATTGTAGTCTATA+TGG - chr4.1:44755813-44755832 None:intergenic 40.0%
GTAATAGTTGGAAACGAAGC+AGG - chr4.1:44758808-44758827 None:intergenic 40.0%
GTCACAGAAGGCAATAACAA+TGG + chr4.1:44759198-44759217 MS.gene03836:CDS 40.0%
TATGGTTGAAGTGAGAGTCT+TGG - chr4.1:44755834-44755853 None:intergenic 40.0%
TCAAGGTTGTTTGTGTCTTC+AGG - chr4.1:44755121-44755140 None:intergenic 40.0%
TGCCTGAGTATGACCAATAA+TGG - chr4.1:44759100-44759119 None:intergenic 40.0%
TTAACTGCCCGAGCAATATT+TGG - chr4.1:44759021-44759040 None:intergenic 40.0%
TTGTTGCATTCAGCGAATCT+AGG - chr4.1:44758485-44758504 None:intergenic 40.0%
! AGATCACTGATGGATGTCAA+TGG + chr4.1:44757604-44757623 MS.gene03836:intron 40.0%
! GTATCGTATTGGTGCAATGA+CGG - chr4.1:44756424-44756443 None:intergenic 40.0%
! GTATTGGTAGTAACCGGAAT+GGG - chr4.1:44755553-44755572 None:intergenic 40.0%
!! AGTATTGGTAGTAACCGGAA+TGG - chr4.1:44755554-44755573 None:intergenic 40.0%
!! GAAGCATCCATGTTTTCGTT+GGG - chr4.1:44755157-44755176 None:intergenic 40.0%
!! TGAAGCATCCATGTTTTCGT+TGG - chr4.1:44755158-44755177 None:intergenic 40.0%
!! TTGGTGATTCGGTATCGTAT+TGG - chr4.1:44756435-44756454 None:intergenic 40.0%
!!! CGACATGTATTTTGAAACGG+AGG - chr4.1:44758010-44757991 None:intergenic 40.0%
AACTGATCTGGGTTCCTTTG+TGG - chr4.1:44758859-44758878 None:intergenic 45.0%
AAGTCAGGACCAGTTAGGAT+CGG + chr4.1:44757357-44757376 MS.gene03836:CDS 45.0%
AATGGCAACAATGTCACCGA+AGG + chr4.1:44759150-44759169 MS.gene03836:CDS 45.0%
ACCTACTGCAGCCAAAGAAA+TGG + chr4.1:44758676-44758695 MS.gene03836:CDS 45.0%
ATGATCATTGTCAGGGACAG+AGG - chr4.1:44755317-44755336 None:intergenic 45.0%
CAAAATGGTAGCTGCTAGCT+AGG + chr4.1:44758514-44758533 MS.gene03836:intron 45.0%
CAGAAGACAACAAGACCAAG+AGG + chr4.1:44755617-44755636 MS.gene03836:CDS 45.0%
CTATATGGGTCTGTCCATGT+GGG - chr4.1:44755798-44755817 None:intergenic 45.0%
CTTTGGCTGCAGTAGGTAAA+GGG - chr4.1:44758673-44758692 None:intergenic 45.0%
GTCGATCCAAGATCTTTCCT+CGG - chr4.1:44757037-44757056 None:intergenic 45.0%
GTGTGTGTGTGTGTGTTTCT+TGG + chr4.1:44755943-44755962 MS.gene03836:intron 45.0%
GTGTGTGTGTGTTTCTTGGT+TGG + chr4.1:44755947-44755966 MS.gene03836:intron 45.0%
TACTAATGCTGAGACTGCGA+TGG + chr4.1:44757297-44757316 MS.gene03836:CDS 45.0%
TCTATATGGGTCTGTCCATG+TGG - chr4.1:44755799-44755818 None:intergenic 45.0%
TCTTTGGCTGCAGTAGGTAA+AGG - chr4.1:44758674-44758693 None:intergenic 45.0%
TGATATGCATTGCACGAGGT+TGG + chr4.1:44758247-44758266 MS.gene03836:intron 45.0%
TTGAGGGATCAAAGAAGCTG+AGG - chr4.1:44758917-44758936 None:intergenic 45.0%
TTTCTCGAAACACATCCGCA+TGG - chr4.1:44756915-44756934 None:intergenic 45.0%
! AACTGAGAATGGTGGAGTAC+TGG + chr4.1:44757009-44757028 MS.gene03836:CDS 45.0%
! ACTGAGAATGGTGGAGTACT+GGG + chr4.1:44757010-44757029 MS.gene03836:CDS 45.0%
! ACTTGAGAATGGTGGAGAGT+TGG + chr4.1:44757243-44757262 MS.gene03836:CDS 45.0%
! CGGAGGGAGTACATGTAATT+TGG - chr4.1:44757744-44757763 None:intergenic 45.0%
! CTAGCTAGCAGCTACCATTT+TGG - chr4.1:44758516-44758535 None:intergenic 45.0%
! TTTTCATCGCCGATCCTAAC+TGG - chr4.1:44757369-44757388 None:intergenic 45.0%
! TTTTCGGACTGAGCAACCAT+GGG - chr4.1:44757697-44757716 None:intergenic 45.0%
!! ACAAGGAAGGAGTGTTCTTG+TGG - chr4.1:44758758-44758777 None:intergenic 45.0%
!! CAAGGAAGGAGTGTTCTTGT+GGG - chr4.1:44758757-44758776 None:intergenic 45.0%
!! TATATAATTAAAGATATTAA+TGG + chr4.1:44757930-44757949 MS.gene03836:intron 5.0%
!! TATATTAGTTAAAAAAAATA+TGG - chr4.1:44757823-44757842 None:intergenic 5.0%
AGACAACAAGACCAAGAGGG+AGG + chr4.1:44755621-44755640 MS.gene03836:CDS 50.0%
AGTAAGTACGTCGACGTCGA+TGG - chr4.1:44758453-44758472 None:intergenic 50.0%
CCTAACTGGTCCTGACTTCT+AGG - chr4.1:44757355-44757374 None:intergenic 50.0%
CCTAGAAGTCAGGACCAGTT+AGG + chr4.1:44757352-44757371 MS.gene03836:CDS 50.0%
GCCATTTCTTTGGCTGCAGT+AGG - chr4.1:44758680-44758699 None:intergenic 50.0%
GTCAATGTGTGACACCCACA+TGG + chr4.1:44755781-44755800 MS.gene03836:intron 50.0%
TATCTTTGCAGCATGGCCCA+TGG + chr4.1:44757678-44757697 MS.gene03836:CDS 50.0%
TCAACAGCTTGGTCCCATTC+CGG + chr4.1:44755537-44755556 MS.gene03836:intron 50.0%
TGGTTGCTCAGTCCGAAAAC+AGG + chr4.1:44757698-44757717 MS.gene03836:CDS 50.0%
! GGGTTCCTTTGTGGAGTATC+TGG - chr4.1:44758850-44758869 None:intergenic 50.0%
! GTTTTCGGACTGAGCAACCA+TGG - chr4.1:44757698-44757717 None:intergenic 50.0%
!! AAGCATCGAGGTTGCTTCGA+AGG + chr4.1:44757387-44757406 MS.gene03836:CDS 50.0%
!! ATCGGCGATGAAAAGCATCG+AGG + chr4.1:44757375-44757394 MS.gene03836:CDS 50.0%
!! CTGAGAATGGTGGAGTACTG+GGG + chr4.1:44757011-44757030 MS.gene03836:CDS 50.0%
GTGTATGGGCATGTGTGCAG+TGG + chr4.1:44757961-44757980 MS.gene03836:intron 55.0%
TGGCTGCAGTAGGTAAAGGG+TGG - chr4.1:44758670-44758689 None:intergenic 55.0%
!! ATGGTGGAGAGTTGGTGCCA+AGG + chr4.1:44757251-44757270 MS.gene03836:CDS 55.0%
CTGGGGCCGAGGAAAGATCT+TGG + chr4.1:44757028-44757047 MS.gene03836:CDS 60.0%
!! ATGGTGGAGTACTGGGGCCG+AGG + chr4.1:44757017-44757036 MS.gene03836:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 44755085 44759260 44755085 ID=MS.gene03836
chr4.1 mRNA 44755085 44759260 44755085 ID=MS.gene03836.t1;Parent=MS.gene03836
chr4.1 exon 44755085 44755378 44755085 ID=MS.gene03836.t1.exon1;Parent=MS.gene03836.t1
chr4.1 CDS 44755085 44755378 44755085 ID=cds.MS.gene03836.t1;Parent=MS.gene03836.t1
chr4.1 exon 44755544 44755642 44755544 ID=MS.gene03836.t1.exon2;Parent=MS.gene03836.t1
chr4.1 CDS 44755544 44755642 44755544 ID=cds.MS.gene03836.t1;Parent=MS.gene03836.t1
chr4.1 exon 44756821 44756961 44756821 ID=MS.gene03836.t1.exon3;Parent=MS.gene03836.t1
chr4.1 CDS 44756821 44756961 44756821 ID=cds.MS.gene03836.t1;Parent=MS.gene03836.t1
chr4.1 exon 44757001 44757510 44757001 ID=MS.gene03836.t1.exon4;Parent=MS.gene03836.t1
chr4.1 CDS 44757001 44757510 44757001 ID=cds.MS.gene03836.t1;Parent=MS.gene03836.t1
chr4.1 exon 44757606 44757719 44757606 ID=MS.gene03836.t1.exon5;Parent=MS.gene03836.t1
chr4.1 CDS 44757606 44757719 44757606 ID=cds.MS.gene03836.t1;Parent=MS.gene03836.t1
chr4.1 exon 44758608 44758784 44758608 ID=MS.gene03836.t1.exon6;Parent=MS.gene03836.t1
chr4.1 CDS 44758608 44758784 44758608 ID=cds.MS.gene03836.t1;Parent=MS.gene03836.t1
chr4.1 exon 44759117 44759260 44759117 ID=MS.gene03836.t1.exon7;Parent=MS.gene03836.t1
chr4.1 CDS 44759117 44759260 44759117 ID=cds.MS.gene03836.t1;Parent=MS.gene03836.t1
Gene Sequence

>MS.gene03836

ATGGCTTCAACTCCAGTTAATGACAACTCGTTTCCTGAAGACACAAACAACCTTGAGTTGAAATTTAGTCCCAACGAAAACATGGATGCTTCACATAGTACTATCCCTTTCTTAGTCAATAGTAGATCCTCCAATGAAAACCAAATCTCTCTAATCCCATCTCATGAAACAAGAGTAGAGTTTGATTTCTTTAAGGACAACAACAATGACTATCATGAAGTTGTCTCTGCCTCTGTCCCTGACAATGATCATATTCATATGAATACACCATCTTTATTGGAACTAAAGCTAATCGTGAGTGACCATAATTCAATATCTCATTATAGTTTTTTTTTACTGATTATATTATATATATATTGTTTTTAAAATTCATAGCTTTTGAATTTATAATCGTAAAAAATCATTTATTTTTTATGATCATTTTGTTAATTTGATGAATATTTATTTTTTCTTCAACAGCTTGGTCCCATTCCGGTTACTACCAATACTAGTAGTGATCAATCTATGATGGATGATTGCATTCTACCTAATTCAGAAGACAACAAGACCAAGAGGGAGGTAATGTTATTAACACCTAGCTGAATTTAAAGAAATTATACCCGATGAACATTTTTTTCCCTTTCGTTTTACCGAGTCAAAATTGAGTGATTTTATATATAGCATAGACATTCTTTAGATTTGAAGGTGTCTGGACTCGTCAATGTGTGACACCCACATGGACAGACCCATATAGACTACAATATGGGCCAAGACTCTCACTTCAACCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATCTGTGTGTGTGTGTGTGTGTTTCTTGGTTGGTTTGACTTATAGTTTTGATCTCTCACTCTTCTTTGACCTATATTTATAAGTATAATACAATATATGATATATACAACTATTAGAGCTGTCGTCCTTTTCTTCCCCTTATTTCAACCATAGATAATATTTATGCATTCATATTGAGTTCAACTAGTATGTTTTGTCAATGTACAATTATTTTATACATGTATCCAATTTTATATTACCATGTTAATTAATGAATACGAAAAATTATGCGTATTCATATATGTTAATTGATGTAGGAGCACATCATTAGATGAATGTGTAAAATAATTGTTCATTGATAGAGTATGCTAATTAAATTATTTCATATTTTATTTTTCTTTTATTTGATTTTATTTAAACATACGTTGTTTAATATTTTCAACCTAATTTGAATTTATTTATTCATTATTTTAAATATTGTCTTCACTACTCAAATTTTCTGGGTCCGTCATTGCACCAATACGATACCGAATCACCAATACATATGGTTACATTTTATTGTTTTATTTTCTCAAATTATTATTTGTTGTTGACGTGTCAGTTTTATTGTTTTGTCCGGTGTTTATGTGTATGTCTGTGTTTATAGAATATTTTTATGTGATTTGGATCCTCTTATTTGTGAAAAAAATATGAGTGAGTTATGTTAATGATCTCAATGTTAAAATGCGTTGCACTCTTATAACACTATTAATATGATGTGGTCCAATGCATTTTGTTTTTGTTGGATAATCAAATTGAATTTAATAGTGAGATGATTATTATAACCTTAACATGTTTTATTCACGTGTGAGAGGATCCAAAGCTATTTTTTGCGATGATGTTTGAATTCTTTGAACTGTTTTCAGATGGCTATTCTTCAAGGCGAGCTTGAACGAAAGAAAATGGAGAACTGTAGATTAAAATTGATGTATGATCAACTTAGAACATATTACAATACCATGCGGATGTGTTTCGAGAAAGTGATGCTAGACCATAAGTTTAAGGAAGTTAAAGGAAAATAATTCTTTGATGGAAAATTTAAAGAGAAAGAGGAAACTGAGAATGGTGGAGTACTGGGGCCGAGGAAAGATCTTGGATCGACTACTAATAAGGTTAAGGAAGTTAAAGGACAAGAAGTTTCTGATGGAAAATTTGGACACAAAAAGAGAATAAAGAATGGTGGAGAATCAATGAAAAGGAAATTTGTTGATGCTGGATTGACTACTATTAAGGTTAAGGAAGTTAAAGGAAAAGAAGTTTTTAATGGAAAATGTGACAAGAAAAAGAGACTTGAGAATGGTGGAGAGTTGGTGCCAAGGCAATGCAAAGATCTTGTGTTGCTTACTAATGCTGAGACTGCGATGGATCATGAAGCTTGTTCCTCATCAATGAGAAAACCTAGAAGTCAGGACCAGTTAGGATCGGCGATGAAAAGCATCGAGGTTGCTTCGAAGGAGTTAGTCCTTAGTAAGAATGTAGATGTTAATGTTGATAATGTTGAGACACCATTGGTGAAAGCAAGAGTTTCTATTAGAGCTAGATCAGAAGAAACTATGGTATGTTAAAGTGTATATTAACTTTCAACTTTGTAAGTTTTTATATTATAACTTGTTGTCCTTTTCGCCTAAAGAATTTATTTTTATTGTGTTAGATCACTGATGGATGTCAATGGAGAAAGTATGGACAAAAACTGTCGAAAGGAAACCCGTGTCCTAAATCTTATTATCTTTGCAGCATGGCCCATGGTTGCTCAGTCCGAAAACAGGTAACTTTCTTCTATAATTATCCAAATTACATGTACTCCCTCCGTTTCAAAATACATGTCGCAATTTTACAATGTACACTATTCACATAGCTTACTTTGACCATATTTTTTTTAACTAATATATAAATACAAATAATAGCATGTAAGATGTTTTTTTTATATGTCTTGACGAATATTTTCAAAATATCAAATTTTTATAATTTTTTATTATATATAATTAAAGATATTAATGGTCAAAGTTGTGTATGGGCATGTGTGCAGTGGTTGACTGCGACATGTATTTTGAAACGGATGGAGTATTTATTAATGTTTTAAATTTATGTCACCCTAATGATTGCTTTCGCATTATTATATTCAATATTATAGAGAATTACAGTCAAATACATTAAACTCTCCGATTGTTTCCTAGATCATAGTCACAAACATGCATATTTTAAAACCTTGTCATTTAATCATCATTTTATGTATGTTTTCAATTAATTACAAAATAACTCTACATACACAAACATTATTAGTGATGATTTATTTGATATGCATTGCACGAGGTTGGATAACAATAGAATTTAATTCAAATGTGTTTCCATTTTCAAAGCTCATGTTTCTATGCTAGAATATGGATTTGGATTTGCTCCATTCCATAATTCATGCATTTACGCATCCATCACGTTGATGACCATTAAAAATCAAAATATGCATTGAAGTTTGGATCATCCAATCTTCGATACAACGACCATCGACGTCGACGTACTTACTATGTGAATGCCTAGATTCGCTGAATGCAACAAACTCAAATCCAAAATGGTAGCTGCTAGCTAGGTTAATTAAAATACTTATGGAATTGTCTATACTACAATGACAATATTATTTAATACAATTCAAACTTAATAGGTACAAAGGTGTGCTCTTGACAGAACAGTTGTAATCACAACTTATGAAGGAAATCACAGCCACCCTTTACCTACTGCAGCCAAAGAAATGGCAAAAACAACTTCAGCAGCTGCAAAGATGCTTCTTTCAGCATCAACATCAATTTACCCACAAGAACACTCCTTCCTTGTTCTTCAAGTATTTCAACTATCTCAGCTCCTGCTTCGTTTCCAACTATTACACTTGATTATACTCAATCTCCAGATACTCCACAAAGGAACCCAGATCAGTTTCAAACTCCTTTAATCTCTCAGAGTTTTGCAAATTCCTCAGCTTCTTTGATCCCTCAAATACCTAATCAAAACCAATCAAAATTTTCTGGACTACAAATGTCAAAATATGCAGCTAGCCCTTCACAATTATTAGCAGTACCAAATATTGCTCGGGCAGTTAATGCTGCCATTGCTGCTAATCCAAATTTTCTTGCATCTTTGTCACCTGCTCTTACTTCCATTATTGGTCATACTCAGGCAAACAACAACACTTCTTCTACTGATAATAATAATGGCAACAATGTCACCGAAGGAAATCACAATGATAGCAACAATAATGTCACAGAAGGCAATAACAATGGTAATATCACAGGTAGCAACACTAATGATCAGAAGGAATAA
Protein sequence

>MS.gene03836.t1

MASTPVNDNSFPEDTNNLELKFSPNENMDASHSTIPFLVNSRSSNENQISLIPSHETRVEFDFFKDNNNDYHEVVSASVPDNDHIHMNTPSLLELKLILGPIPVTTNTSSDQSMMDDCILPNSEDNKTKREMAILQGELERKKMENCRLKLMYDQLRTYYNTMRMCFEKVMLDHKFKEKEETENGGVLGPRKDLGSTTNKVKEVKGQEVSDGKFGHKKRIKNGGESMKRKFVDAGLTTIKVKEVKGKEVFNGKCDKKKRLENGGELVPRQCKDLVLLTNAETAMDHEACSSSMRKPRSQDQLGSAMKSIEVASKELVLSKNVDVNVDNVETPLVKARVSIRARSEETMITDGCQWRKYGQKLSKGNPCPKSYYLCSMAHGCSVRKQVQRCALDRTVVITTYEGNHSHPLPTAAKEMAKTTSAAAKMLLSASTSIYPQEHSFLVLQANNNTSSTDNNNGNNVTEGNHNDSNNNVTEGNNNGNITGSNTNDQKE