Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038397.t1 | XP_003612426.2 | 67.4 | 561 | 50 | 6 | 1 | 449 | 1 | 540 | 4.70E-186 | 661.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038397.t1 | Q940Y3 | 46.2 | 403 | 174 | 10 | 67 | 449 | 343 | 722 | 8.6e-80 | 299.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038397.t1 | G7K2M1 | 67.4 | 561 | 50 | 6 | 1 | 449 | 1 | 540 | 3.4e-186 | 661.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038397.t1 | TR | ARID |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038397.t1 | MTR_5g024920 | 88.535 | 314 | 21 | 1 | 148 | 461 | 329 | 627 | 0.0 | 576 |
| MS.gene038397.t1 | MTR_5g024920 | 77.820 | 266 | 8 | 2 | 449 | 678 | 366 | 616 | 3.27e-136 | 414 |
| MS.gene038397.t1 | MTR_5g024920 | 80.690 | 145 | 13 | 3 | 13 | 148 | 88 | 226 | 3.88e-58 | 208 |
| MS.gene038397.t1 | MTR_5g024920 | 91.060 | 302 | 12 | 1 | 148 | 449 | 254 | 540 | 0.0 | 571 |
| MS.gene038397.t1 | MTR_5g024920 | 77.820 | 266 | 8 | 2 | 449 | 678 | 291 | 541 | 5.83e-137 | 415 |
| MS.gene038397.t1 | MTR_5g024920 | 79.618 | 157 | 17 | 3 | 1 | 148 | 1 | 151 | 2.14e-64 | 224 |
| MS.gene038397.t1 | MTR_3g116200 | 48.703 | 347 | 125 | 9 | 116 | 452 | 7 | 310 | 3.49e-86 | 273 |
| MS.gene038397.t1 | MTR_3g116200 | 49.416 | 257 | 70 | 5 | 463 | 677 | 69 | 307 | 1.42e-67 | 224 |
| MS.gene038397.t1 | MTR_3g116200 | 49.128 | 344 | 122 | 9 | 116 | 449 | 7 | 307 | 5.44e-85 | 272 |
| MS.gene038397.t1 | MTR_3g116200 | 49.612 | 258 | 70 | 5 | 463 | 678 | 69 | 308 | 2.55e-67 | 226 |
| MS.gene038397.t1 | MTR_1g033910 | 68.421 | 76 | 11 | 2 | 1 | 69 | 1 | 70 | 1.70e-23 | 95.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038397.t1 | AT2G17410 | 61.597 | 263 | 74 | 4 | 188 | 449 | 480 | 716 | 6.58e-97 | 316 |
| MS.gene038397.t1 | AT2G17410 | 51.471 | 272 | 69 | 5 | 444 | 678 | 472 | 717 | 6.39e-78 | 265 |
| MS.gene038397.t1 | AT2G17410 | 60.755 | 265 | 79 | 4 | 188 | 449 | 480 | 722 | 8.15e-97 | 316 |
| MS.gene038397.t1 | AT2G17410 | 50.730 | 274 | 74 | 5 | 444 | 678 | 472 | 723 | 7.47e-78 | 265 |
| MS.gene038397.t1 | AT2G17410 | 60.755 | 265 | 79 | 4 | 188 | 449 | 480 | 722 | 8.15e-97 | 316 |
| MS.gene038397.t1 | AT2G17410 | 50.730 | 274 | 74 | 5 | 444 | 678 | 472 | 723 | 7.47e-78 | 265 |
| MS.gene038397.t1 | AT1G76510 | 53.516 | 256 | 94 | 4 | 199 | 449 | 137 | 372 | 1.80e-77 | 254 |
| MS.gene038397.t1 | AT1G76510 | 44.141 | 256 | 84 | 4 | 463 | 678 | 137 | 373 | 5.82e-58 | 202 |
| MS.gene038397.t1 | AT1G76510 | 53.516 | 256 | 94 | 4 | 199 | 449 | 137 | 372 | 1.80e-77 | 254 |
| MS.gene038397.t1 | AT1G76510 | 44.141 | 256 | 84 | 4 | 463 | 678 | 137 | 373 | 5.82e-58 | 202 |
| MS.gene038397.t1 | AT1G76510 | 53.516 | 256 | 94 | 4 | 199 | 449 | 137 | 372 | 1.80e-77 | 254 |
| MS.gene038397.t1 | AT1G76510 | 44.141 | 256 | 84 | 4 | 463 | 678 | 137 | 373 | 5.82e-58 | 202 |
| MS.gene038397.t1 | AT1G20910 | 51.172 | 256 | 100 | 4 | 199 | 449 | 101 | 336 | 2.71e-72 | 240 |
| MS.gene038397.t1 | AT1G20910 | 43.191 | 257 | 85 | 4 | 463 | 678 | 101 | 337 | 1.26e-53 | 190 |
| MS.gene038397.t1 | AT1G20910 | 51.172 | 256 | 100 | 4 | 199 | 449 | 101 | 336 | 3.48e-72 | 239 |
| MS.gene038397.t1 | AT1G20910 | 43.191 | 257 | 85 | 4 | 463 | 678 | 101 | 337 | 1.58e-53 | 189 |
| MS.gene038397.t1 | AT1G76510 | 49.104 | 279 | 94 | 5 | 199 | 449 | 137 | 395 | 1.02e-71 | 241 |
| MS.gene038397.t1 | AT1G76510 | 40.502 | 279 | 84 | 5 | 463 | 678 | 137 | 396 | 2.06e-52 | 189 |
Find 176 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCCATTCTCCATAAAATT+TGG | 0.109421 | 5.4:-73114417 | None:intergenic |
| AAGCCATTCTCCATAAAATT+TGG | 0.116651 | 5.4:-73118995 | None:intergenic |
| AATCTTGCTGGTTTGGAATT+AGG | 0.186518 | 5.4:+73113867 | MS.gene038397:CDS |
| TTCCACCAAACCTTTATAAT+AGG | 0.195321 | 5.4:-73117655 | None:intergenic |
| CCACAGTTTCCTGGACTTTC+CGG | 0.219944 | 5.4:+73120841 | MS.gene038397:CDS |
| CCACAGTTTCCTGGACTTTC+CGG | 0.221520 | 5.4:+73116274 | MS.gene038397:CDS |
| AGGAGCTTGAAAACTTCTTT+AGG | 0.247131 | 5.4:+73114369 | MS.gene038397:CDS |
| AGGAGCTTGAAAACTTCTTT+AGG | 0.247131 | 5.4:+73118947 | MS.gene038397:CDS |
| GTGTCAGATGATGTTAAAAT+TGG | 0.259184 | 5.4:+73113978 | MS.gene038397:CDS |
| TACTTCCTCCTTCTTCTTCT+CGG | 0.270300 | 5.4:-73122725 | None:intergenic |
| AACATGTTCTGCTGCGAATC+CGG | 0.285848 | 5.4:-73114275 | None:intergenic |
| GAAATATATGCTTTAGTTCC+TGG | 0.296044 | 5.4:+73118368 | MS.gene038397:CDS |
| GAAATATATGCTTTAGTTCC+TGG | 0.296044 | 5.4:+73122675 | MS.gene038397:CDS |
| GGACTTGCACCACAGTTTCC+TGG | 0.301953 | 5.4:+73120832 | MS.gene038397:intron |
| ACGTAAGAGCCCATCTTATA+TGG | 0.307472 | 5.4:+73117919 | MS.gene038397:CDS |
| ACGTAAGAGCCCATCTTATA+TGG | 0.307472 | 5.4:+73122224 | MS.gene038397:CDS |
| TGGCACTCACAACGTCTTCT+TGG | 0.307906 | 5.4:+73117613 | MS.gene038397:CDS |
| TACGAAAGGCATAACATAAA+AGG | 0.323371 | 5.4:+73116609 | MS.gene038397:CDS |
| TATGAAAGGCATAACATAAA+AGG | 0.325509 | 5.4:+73121178 | MS.gene038397:CDS |
| TATTGATAATCTTGCTGGTT+TGG | 0.333193 | 5.4:+73113860 | MS.gene038397:CDS |
| TCCACCAAACCTTTATAATA+GGG | 0.338104 | 5.4:-73117654 | None:intergenic |
| GCCTGTGAATGTTGAAAATC+AGG | 0.345539 | 5.4:+73116668 | MS.gene038397:CDS |
| GCCTGTGAATGTTGAAAATC+AGG | 0.345539 | 5.4:+73121237 | MS.gene038397:CDS |
| GGAGCTTGAAAACTTCTTTA+GGG | 0.352045 | 5.4:+73114370 | MS.gene038397:CDS |
| GGAGCTTGAAAACTTCTTTA+GGG | 0.352045 | 5.4:+73118948 | MS.gene038397:CDS |
| AGCCATTCTCCATAAAATTT+GGG | 0.353493 | 5.4:-73114416 | None:intergenic |
| AGCCATTCTCCATAAAATTT+GGG | 0.353903 | 5.4:-73118994 | None:intergenic |
| ATTCCTGTCCTTGTATCATC+AGG | 0.357516 | 5.4:-73114182 | None:intergenic |
| TAAGATGGGCTCTTACGTTT+AGG | 0.359154 | 5.4:-73117914 | None:intergenic |
| TAAGATGGGCTCTTACGTTT+AGG | 0.359154 | 5.4:-73122219 | None:intergenic |
| GGACATGCACCACAGTTTCC+TGG | 0.366165 | 5.4:+73116265 | MS.gene038397:intron |
| CATAGGACCTTCTGCTGATT+GGG | 0.368858 | 5.4:+73118225 | MS.gene038397:CDS |
| CATAGGACCTTCTGCTGATT+GGG | 0.368858 | 5.4:+73122532 | MS.gene038397:CDS |
| CATAGGACCTTCTGCTGATT+GGG | 0.373243 | 5.4:+73118180 | MS.gene038397:CDS |
| CATAGGACCTTCTGCTGATT+GGG | 0.373243 | 5.4:+73122487 | MS.gene038397:CDS |
| CAAAGTGGGTCAGGGTGTTC+CGG | 0.378330 | 5.4:+73113758 | MS.gene038397:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.4:+73118179 | MS.gene038397:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.4:+73118224 | MS.gene038397:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.4:+73122486 | MS.gene038397:CDS |
| ACATAGGACCTTCTGCTGAT+TGG | 0.380929 | 5.4:+73122531 | MS.gene038397:CDS |
| GAAGTTTCCTCTACAGTAAC+CGG | 0.388879 | 5.4:-73113939 | None:intergenic |
| ATGATTATTGATAATCTTGC+TGG | 0.390384 | 5.4:+73113855 | MS.gene038397:CDS |
| AGCTAGTGACCCTATTATAA+AGG | 0.397531 | 5.4:+73117645 | MS.gene038397:CDS |
| CCGGAGATATGCTGCTGAAC+AGG | 0.399445 | 5.4:+73117579 | MS.gene038397:CDS |
| TGCTGCTGAACAGGCTATGC+GGG | 0.403913 | 5.4:+73117588 | MS.gene038397:CDS |
| ACTGCATTATCCATATAAGA+TGG | 0.421547 | 5.4:-73117929 | None:intergenic |
| ACTGCATTATCCATATAAGA+TGG | 0.421547 | 5.4:-73122234 | None:intergenic |
| ACCTCCTCCCGCAGAAGGCC+AGG | 0.422953 | 5.4:-73122693 | None:intergenic |
| AGAAAACGACAAAGTGGGTC+AGG | 0.425358 | 5.4:+73113749 | MS.gene038397:CDS |
| ACCTCCTCCCGCAGAAGGCC+AGG | 0.425504 | 5.4:-73118386 | None:intergenic |
| TCACAACGTCTTCTTGGAAA+TGG | 0.433012 | 5.4:+73117619 | MS.gene038397:CDS |
| CTGAACAGGCTATGCGGGGT+TGG | 0.442024 | 5.4:+73117593 | MS.gene038397:CDS |
| TTGGGTATATGTGGATGATA+TGG | 0.442155 | 5.4:+73122505 | MS.gene038397:CDS |
| TGTGTCTAGGGTTTAGCATC+AGG | 0.444410 | 5.4:+73117550 | MS.gene038397:intron |
| TGTTCAAGATACCCTTCATT+CGG | 0.446726 | 5.4:+73114073 | MS.gene038397:CDS |
| ATACCTTCTGAAACAACCTT+GGG | 0.449374 | 5.4:-73114038 | None:intergenic |
| GATGCTGATCATTATTATGA+TGG | 0.450037 | 5.4:+73114305 | MS.gene038397:CDS |
| GATGCTGATCATTATTATGA+TGG | 0.450037 | 5.4:+73118883 | MS.gene038397:CDS |
| ATGGAGAGCTGTGATGAGAT+TGG | 0.450926 | 5.4:+73114565 | MS.gene038397:CDS |
| ATGGAGAGCTGTGATGAGAT+TGG | 0.450926 | 5.4:+73119143 | MS.gene038397:CDS |
| CCTGTTCAGCAGCATATCTC+CGG | 0.454295 | 5.4:-73117579 | None:intergenic |
| ACATGTTCTGCTGCGAATCC+GGG | 0.460181 | 5.4:-73114274 | None:intergenic |
| TTTAGTTCCTGGCCTTCTGC+GGG | 0.466389 | 5.4:+73118379 | MS.gene038397:CDS |
| TTTAGTTCCTGGCCTTCTGC+GGG | 0.466389 | 5.4:+73122686 | MS.gene038397:CDS |
| TCACCTTCTCATAAAATGTC+CGG | 0.477569 | 5.4:-73116293 | None:intergenic |
| TCCTGGCCTTCTGCGGGAGG+AGG | 0.479319 | 5.4:+73118385 | MS.gene038397:CDS |
| TCCTGGCCTTCTGCGGGAGG+AGG | 0.479319 | 5.4:+73122692 | MS.gene038397:CDS |
| TTAGAAGTTGAAAGTAAGGA+TGG | 0.483513 | 5.4:+73114215 | MS.gene038397:CDS |
| TGTCTTAACTGTGGTCTTGA+CGG | 0.484727 | 5.4:-73117971 | None:intergenic |
| TGTCTTAACTGTGGTCTTGA+CGG | 0.484727 | 5.4:-73122276 | None:intergenic |
| TTCTGCTGATTGGGTATATG+TGG | 0.487210 | 5.4:+73118189 | MS.gene038397:CDS |
| TTCTGCTGATTGGGTATATG+TGG | 0.487210 | 5.4:+73122496 | MS.gene038397:CDS |
| GATGCATCTTGAAGTTCAAC+CGG | 0.489348 | 5.4:+73113920 | MS.gene038397:CDS |
| TACAAAAGAAAACGACAAAG+TGG | 0.494694 | 5.4:+73113743 | MS.gene038397:CDS |
| TCACCTTCTCATAAAATCTC+CGG | 0.500478 | 5.4:-73120860 | None:intergenic |
| AATACCTTCTGAAACAACCT+TGG | 0.501857 | 5.4:-73114039 | None:intergenic |
| TGGAGAGCTGTGATGAGATT+GGG | 0.502339 | 5.4:+73114566 | MS.gene038397:CDS |
| TGGAGAGCTGTGATGAGATT+GGG | 0.502339 | 5.4:+73119144 | MS.gene038397:CDS |
| TATTATGATGGAAATGAGTC+GGG | 0.503594 | 5.4:+73114317 | MS.gene038397:CDS |
| TATTATGATGGAAATGAGTC+GGG | 0.503594 | 5.4:+73118895 | MS.gene038397:CDS |
| GAAAATGAAAATTCAAAACT+AGG | 0.506491 | 5.4:+73113819 | MS.gene038397:CDS |
| TATGCCTTTCATAATCAAGA+AGG | 0.508041 | 5.4:-73121168 | None:intergenic |
| TCCTCTACATTAACATTCGC+CGG | 0.508778 | 5.4:-73113777 | None:intergenic |
| CTTTAGTTCCTGGCCTTCTG+CGG | 0.509492 | 5.4:+73118378 | MS.gene038397:CDS |
| CTTTAGTTCCTGGCCTTCTG+CGG | 0.509492 | 5.4:+73122685 | MS.gene038397:CDS |
| TTGAAAACTTCTTTAGGGAG+AGG | 0.509895 | 5.4:+73114375 | MS.gene038397:CDS |
| TTGAAAACTTCTTTAGGGAG+AGG | 0.509895 | 5.4:+73118953 | MS.gene038397:CDS |
| TGTCAGATGATGTTAAAATT+GGG | 0.511487 | 5.4:+73113979 | MS.gene038397:CDS |
| CAGCCGCCTCAACCGAATGA+AGG | 0.516023 | 5.4:-73114085 | None:intergenic |
| TCATATGTTGGACACAGCTA+AGG | 0.516542 | 5.4:+73114112 | MS.gene038397:CDS |
| TTATTATGATGGAAATGAGT+CGG | 0.516599 | 5.4:+73114316 | MS.gene038397:CDS |
| TTATTATGATGGAAATGAGT+CGG | 0.516599 | 5.4:+73118894 | MS.gene038397:CDS |
| AGATACCCTTCATTCGGTTG+AGG | 0.521109 | 5.4:+73114079 | MS.gene038397:CDS |
| ATGTAAGTTGTGGCGGAGTG+TGG | 0.521969 | 5.4:+73115449 | MS.gene038397:CDS |
| ATGTAAGTTGTGGCGGAGTG+TGG | 0.521969 | 5.4:+73119979 | MS.gene038397:CDS |
| GGCCTTCTGCGGGAGGAGGT+AGG | 0.523574 | 5.4:+73122696 | MS.gene038397:CDS |
| CTTCTTTAGGGAGAGGAGCA+TGG | 0.528705 | 5.4:+73114382 | MS.gene038397:CDS |
| CTTCTTTAGGGAGAGGAGCA+TGG | 0.528705 | 5.4:+73118960 | MS.gene038397:CDS |
| AGGCCCTTCTTGATTATGAA+AGG | 0.535189 | 5.4:+73121164 | MS.gene038397:intron |
| GGCTCTGGAGGAGATGTGAT+AGG | 0.536058 | 5.4:-73116648 | None:intergenic |
| TATGCCTTTCGTAATCAAGA+AGG | 0.542010 | 5.4:-73116599 | None:intergenic |
| GTCCTTGTATCATCAGGGGC+AGG | 0.543099 | 5.4:-73114176 | None:intergenic |
| AGTTCCTGGCCTTCTGCGGG+AGG | 0.546177 | 5.4:+73118382 | MS.gene038397:CDS |
| AGTTCCTGGCCTTCTGCGGG+AGG | 0.546177 | 5.4:+73122689 | MS.gene038397:CDS |
| AAACCCAAGGTTGTTTCAGA+AGG | 0.551480 | 5.4:+73114035 | MS.gene038397:CDS |
| ATAAAATCTCCGGAAAGTCC+AGG | 0.551594 | 5.4:-73120850 | None:intergenic |
| CTGCATTATCCATATAAGAT+GGG | 0.554084 | 5.4:-73117928 | None:intergenic |
| CTGCATTATCCATATAAGAT+GGG | 0.554084 | 5.4:-73122233 | None:intergenic |
| AGTTCAACCGGTTACTGTAG+AGG | 0.554846 | 5.4:+73113932 | MS.gene038397:CDS |
| GAGGAAGCTGACCATGTCAT+TGG | 0.555265 | 5.4:+73113795 | MS.gene038397:CDS |
| GCAGTACCTCCTCCCGCAGA+AGG | 0.555601 | 5.4:-73118391 | None:intergenic |
| TTGGGTATATGTGGATGCTA+TGG | 0.555897 | 5.4:+73118198 | MS.gene038397:CDS |
| TTCCTGCCCCTGATGATACA+AGG | 0.557681 | 5.4:+73114174 | MS.gene038397:CDS |
| GGAGAATGCCGAGAAGAAGA+AGG | 0.558229 | 5.4:+73122717 | MS.gene038397:CDS |
| GGAACAACTGTGGTTGACAT+AGG | 0.559671 | 5.4:+73122470 | MS.gene038397:CDS |
| CTCCTACCTCCTCCCGCAGA+AGG | 0.560155 | 5.4:-73122698 | None:intergenic |
| GAGATTGGGAGGCTATGAGA+AGG | 0.562330 | 5.4:+73114580 | MS.gene038397:CDS |
| GAGATTGGGAGGCTATGAGA+AGG | 0.562330 | 5.4:+73119158 | MS.gene038397:CDS |
| TTCCTGTCCTTGTATCATCA+GGG | 0.567796 | 5.4:-73114181 | None:intergenic |
| AGGCCCTTCTTGATTACGAA+AGG | 0.570162 | 5.4:+73116595 | MS.gene038397:intron |
| CTGTTCAGCAGCATATCTCC+GGG | 0.570165 | 5.4:-73117578 | None:intergenic |
| TCAACATTCACAGGCTCTGG+AGG | 0.570563 | 5.4:-73116660 | None:intergenic |
| TCAACATTCACAGGCTCTGG+AGG | 0.570563 | 5.4:-73121229 | None:intergenic |
| GCTCCTTCATAAAAGCTGCT+TGG | 0.572842 | 5.4:-73114352 | None:intergenic |
| GCTCCTTCATAAAAGCTGCT+TGG | 0.572842 | 5.4:-73118930 | None:intergenic |
| GGCGGCTGATGCTCATATGT+TGG | 0.573754 | 5.4:+73114100 | MS.gene038397:CDS |
| GGAACAGCTGTGGTTGACAT+AGG | 0.574547 | 5.4:+73118163 | MS.gene038397:CDS |
| TACCCTTCATTCGGTTGAGG+CGG | 0.575922 | 5.4:+73114082 | MS.gene038397:CDS |
| GCCCCTGATGATACAAGGAC+AGG | 0.576326 | 5.4:+73114179 | MS.gene038397:CDS |
| ATAAAATGTCCGGAAAGTCC+AGG | 0.582795 | 5.4:-73116283 | None:intergenic |
| TGTTAAAATTGGGAAGGAAG+AGG | 0.583384 | 5.4:+73113989 | MS.gene038397:CDS |
| AGCCGCCTCAACCGAATGAA+GGG | 0.583777 | 5.4:-73114084 | None:intergenic |
| CATTCTCCATAAAATTTGGG+AGG | 0.584904 | 5.4:-73114413 | None:intergenic |
| CATTCTCCATAAAATTTGGG+AGG | 0.584904 | 5.4:-73118991 | None:intergenic |
| GTTTAGCATCAGGTAGATCC+CGG | 0.586774 | 5.4:+73117560 | MS.gene038397:CDS |
| ATGCCTTTCATAATCAAGAA+GGG | 0.589284 | 5.4:-73121167 | None:intergenic |
| ATGCCTTTCGTAATCAAGAA+GGG | 0.591525 | 5.4:-73116598 | None:intergenic |
| CATATGTTGGACACAGCTAA+GGG | 0.591530 | 5.4:+73114113 | MS.gene038397:CDS |
| GCCTGTAGATAATGAAAACC+CGG | 0.601904 | 5.4:+73114256 | MS.gene038397:CDS |
| AGATGATGTTAAAATTGGGA+AGG | 0.607157 | 5.4:+73113983 | MS.gene038397:CDS |
| AGGTAACCTCATGTAAGTTG+TGG | 0.607979 | 5.4:+73115439 | MS.gene038397:intron |
| AGGTAACCTCATGTAAGTTG+TGG | 0.607979 | 5.4:+73119969 | MS.gene038397:intron |
| TGTAAGTTGTGGCGGAGTGT+GGG | 0.610524 | 5.4:+73115450 | MS.gene038397:CDS |
| TGTAAGTTGTGGCGGAGTGT+GGG | 0.610524 | 5.4:+73119980 | MS.gene038397:CDS |
| GAAAACGACAAAGTGGGTCA+GGG | 0.611750 | 5.4:+73113750 | MS.gene038397:CDS |
| AAATGAGTCGGGAACAGAAG+AGG | 0.612300 | 5.4:+73114328 | MS.gene038397:CDS |
| AAATGAGTCGGGAACAGAAG+AGG | 0.612300 | 5.4:+73118906 | MS.gene038397:CDS |
| TAACCTCATGTAAGTTGTGG+CGG | 0.622380 | 5.4:+73115442 | MS.gene038397:CDS |
| TAACCTCATGTAAGTTGTGG+CGG | 0.622380 | 5.4:+73119972 | MS.gene038397:CDS |
| TGCTAGGTCGGGAACAGCTG+TGG | 0.627055 | 5.4:+73118153 | MS.gene038397:intron |
| TCCTGTCCTTGTATCATCAG+GGG | 0.629902 | 5.4:-73114180 | None:intergenic |
| GAATGCCGAGAAGAAGAAGG+AGG | 0.630764 | 5.4:+73122720 | MS.gene038397:CDS |
| ACATATACCCAATCAGCAGA+AGG | 0.633534 | 5.4:-73118187 | None:intergenic |
| ACATATACCCAATCAGCAGA+AGG | 0.633534 | 5.4:-73122494 | None:intergenic |
| ATGCTGCTGAACAGGCTATG+CGG | 0.643981 | 5.4:+73117587 | MS.gene038397:CDS |
| ACAAAAGAAAACGACAAAGT+GGG | 0.644226 | 5.4:+73113744 | MS.gene038397:CDS |
| GTGGATGCTATGGTTGACAT+AGG | 0.648553 | 5.4:+73118208 | MS.gene038397:CDS |
| GTGGATGATATGGTTGACAT+AGG | 0.648553 | 5.4:+73122515 | MS.gene038397:CDS |
| TGAATATGCTTCTGATGTGA+AGG | 0.658428 | 5.4:+73114136 | MS.gene038397:CDS |
| GGCTCTGGAGGAGATGCGAT+AGG | 0.659024 | 5.4:-73121217 | None:intergenic |
| TCCGGCGAATGTTAATGTAG+AGG | 0.660878 | 5.4:+73113776 | MS.gene038397:CDS |
| GAAAGGCATAACATAAAAGG+CGG | 0.672469 | 5.4:+73121181 | MS.gene038397:CDS |
| ATATGCTTCTGATGTGAAGG+TGG | 0.676430 | 5.4:+73114139 | MS.gene038397:CDS |
| GCTGCTGAACAGGCTATGCG+GGG | 0.681802 | 5.4:+73117589 | MS.gene038397:CDS |
| CCGGAAAGTCCAGGAAACTG+TGG | 0.685217 | 5.4:-73120841 | None:intergenic |
| CCGGAAAGTCCAGGAAACTG+TGG | 0.692339 | 5.4:-73116274 | None:intergenic |
| TGCTAGGTCGGGAACAACTG+TGG | 0.692766 | 5.4:+73122460 | MS.gene038397:intron |
| GGATGAAAATGTGAAACCCA+AGG | 0.695062 | 5.4:+73114022 | MS.gene038397:CDS |
| GAAAGGCATAACATAAAAGG+CGG | 0.700632 | 5.4:+73116612 | MS.gene038397:CDS |
| GAAGGAAGAGGTGCATGCTG+AGG | 0.700761 | 5.4:+73114001 | MS.gene038397:CDS |
| ACTCCGCCACAACTTACATG+AGG | 0.707054 | 5.4:-73115445 | None:intergenic |
| ACTCCGCCACAACTTACATG+AGG | 0.707054 | 5.4:-73119975 | None:intergenic |
| ATAATGCAGTCAAAGCAGCA+CGG | 0.717518 | 5.4:+73117942 | MS.gene038397:CDS |
| ATAATGCAGTCAAAGCAGCA+CGG | 0.717518 | 5.4:+73122247 | MS.gene038397:CDS |
| AGAGCTGTGATGAGATTGGG+AGG | 0.730490 | 5.4:+73114569 | MS.gene038397:CDS |
| AGAGCTGTGATGAGATTGGG+AGG | 0.730490 | 5.4:+73119147 | MS.gene038397:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 73113735 | 73122752 | 73113735 | ID=MS.gene038397 |
| chr5.4 | mRNA | 73113735 | 73122752 | 73113735 | ID=MS.gene038397.t1;Parent=MS.gene038397 |
| chr5.4 | exon | 73113735 | 73114450 | 73113735 | ID=MS.gene038397.t1.exon1;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73113735 | 73114450 | 73113735 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73114562 | 73114601 | 73114562 | ID=MS.gene038397.t1.exon2;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73114562 | 73114601 | 73114562 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73115441 | 73115493 | 73115441 | ID=MS.gene038397.t1.exon3;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73115441 | 73115493 | 73115441 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73116266 | 73116311 | 73116266 | ID=MS.gene038397.t1.exon4;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73116266 | 73116311 | 73116266 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73116597 | 73116689 | 73116597 | ID=MS.gene038397.t1.exon5;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73116597 | 73116689 | 73116597 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73117559 | 73117666 | 73117559 | ID=MS.gene038397.t1.exon6;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73117559 | 73117666 | 73117559 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73117756 | 73117807 | 73117756 | ID=MS.gene038397.t1.exon7;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73117756 | 73117807 | 73117756 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73117909 | 73117984 | 73117909 | ID=MS.gene038397.t1.exon8;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73117909 | 73117984 | 73117909 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73118159 | 73118270 | 73118159 | ID=MS.gene038397.t1.exon9;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73118159 | 73118270 | 73118159 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73118356 | 73118406 | 73118356 | ID=MS.gene038397.t1.exon10;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73118356 | 73118406 | 73118356 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73118868 | 73119028 | 73118868 | ID=MS.gene038397.t1.exon11;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73118868 | 73119028 | 73118868 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73119140 | 73119179 | 73119140 | ID=MS.gene038397.t1.exon12;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73119140 | 73119179 | 73119140 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73119971 | 73120023 | 73119971 | ID=MS.gene038397.t1.exon13;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73119971 | 73120023 | 73119971 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73120833 | 73120878 | 73120833 | ID=MS.gene038397.t1.exon14;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73120833 | 73120878 | 73120833 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73121166 | 73121258 | 73121166 | ID=MS.gene038397.t1.exon15;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73121166 | 73121258 | 73121166 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73122059 | 73122110 | 73122059 | ID=MS.gene038397.t1.exon16;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73122059 | 73122110 | 73122059 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73122214 | 73122289 | 73122214 | ID=MS.gene038397.t1.exon17;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73122214 | 73122289 | 73122214 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73122466 | 73122577 | 73122466 | ID=MS.gene038397.t1.exon18;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73122466 | 73122577 | 73122466 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| chr5.4 | exon | 73122663 | 73122752 | 73122663 | ID=MS.gene038397.t1.exon19;Parent=MS.gene038397.t1 |
| chr5.4 | CDS | 73122663 | 73122752 | 73122663 | ID=cds.MS.gene038397.t1;Parent=MS.gene038397.t1 |
| Gene Sequence |
| Protein sequence |
