Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038444.t1 | XP_003628796.1 | 100 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 5.90E-133 | 483.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038444.t1 | G7LHN8 | 100.0 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 4.2e-133 | 483.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038444.t1 | TF | PLATZ |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038444.t1 | MTR_8g066820 | 100.000 | 232 | 0 | 0 | 1 | 232 | 1 | 232 | 1.62e-177 | 486 |
| MS.gene038444.t1 | MTR_5g030130 | 85.897 | 234 | 29 | 3 | 1 | 231 | 1 | 233 | 1.32e-147 | 411 |
| MS.gene038444.t1 | MTR_5g030130 | 87.952 | 166 | 18 | 1 | 1 | 164 | 1 | 166 | 5.76e-109 | 311 |
| MS.gene038444.t1 | MTR_5g007230 | 70.370 | 216 | 54 | 4 | 19 | 233 | 7 | 213 | 4.37e-108 | 310 |
| MS.gene038444.t1 | MTR_4g078170 | 72.414 | 203 | 52 | 4 | 31 | 232 | 13 | 212 | 7.50e-104 | 299 |
| MS.gene038444.t1 | MTR_1g062160 | 55.340 | 206 | 73 | 5 | 33 | 229 | 7 | 202 | 4.09e-73 | 221 |
| MS.gene038444.t1 | MTR_7g102790 | 58.333 | 204 | 71 | 5 | 33 | 229 | 7 | 203 | 2.53e-71 | 216 |
| MS.gene038444.t1 | MTR_2g060540 | 49.630 | 135 | 58 | 4 | 34 | 158 | 11 | 145 | 9.09e-39 | 132 |
| MS.gene038444.t1 | MTR_2g060500 | 48.148 | 135 | 60 | 3 | 34 | 158 | 11 | 145 | 2.34e-38 | 130 |
| MS.gene038444.t1 | MTR_4g116300 | 48.031 | 127 | 65 | 1 | 33 | 159 | 6 | 131 | 6.41e-37 | 130 |
| MS.gene038444.t1 | MTR_2g055210 | 31.818 | 264 | 130 | 6 | 9 | 228 | 82 | 339 | 1.69e-36 | 131 |
| MS.gene038444.t1 | MTR_2g084495 | 34.052 | 232 | 109 | 6 | 34 | 228 | 5 | 229 | 3.28e-36 | 127 |
| MS.gene038444.t1 | MTR_4g094680 | 33.478 | 230 | 118 | 7 | 26 | 228 | 15 | 236 | 4.69e-35 | 125 |
| MS.gene038444.t1 | MTR_2g084525 | 46.715 | 137 | 63 | 4 | 34 | 160 | 5 | 141 | 8.14e-32 | 117 |
| MS.gene038444.t1 | MTR_2g084510 | 43.066 | 137 | 68 | 3 | 34 | 160 | 4 | 140 | 1.14e-30 | 114 |
| MS.gene038444.t1 | MTR_2g036170 | 31.532 | 222 | 119 | 6 | 33 | 228 | 37 | 251 | 8.08e-28 | 106 |
| MS.gene038444.t1 | MTR_8g105930 | 33.951 | 162 | 82 | 6 | 19 | 159 | 1 | 158 | 1.51e-16 | 76.3 |
| MS.gene038444.t1 | MTR_8g097310 | 29.193 | 161 | 99 | 4 | 72 | 228 | 4 | 153 | 1.82e-15 | 71.6 |
| MS.gene038444.t1 | MTR_5g077740 | 27.228 | 202 | 103 | 9 | 33 | 228 | 23 | 186 | 7.21e-15 | 70.9 |
| MS.gene038444.t1 | MTR_1g032880 | 33.929 | 112 | 60 | 4 | 79 | 180 | 27 | 134 | 4.42e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038444.t1 | AT4G17900 | 73.391 | 233 | 52 | 5 | 1 | 229 | 1 | 227 | 2.61e-122 | 347 |
| MS.gene038444.t1 | AT4G17900 | 72.906 | 203 | 46 | 4 | 30 | 229 | 17 | 213 | 6.14e-104 | 300 |
| MS.gene038444.t1 | AT1G32700 | 71.495 | 214 | 51 | 5 | 24 | 232 | 2 | 210 | 7.03e-102 | 294 |
| MS.gene038444.t1 | AT1G32700 | 71.023 | 176 | 42 | 4 | 61 | 232 | 1 | 171 | 2.44e-78 | 233 |
| MS.gene038444.t1 | AT5G46710 | 52.521 | 238 | 90 | 8 | 1 | 228 | 1 | 225 | 6.69e-78 | 234 |
| MS.gene038444.t1 | AT1G21000 | 50.209 | 239 | 82 | 4 | 26 | 228 | 6 | 243 | 6.64e-77 | 232 |
| MS.gene038444.t1 | AT1G21000 | 50.209 | 239 | 82 | 4 | 26 | 228 | 9 | 246 | 8.07e-77 | 232 |
| MS.gene038444.t1 | AT1G76590 | 50.877 | 228 | 80 | 4 | 33 | 228 | 18 | 245 | 2.03e-74 | 226 |
| MS.gene038444.t1 | AT5G46710 | 52.830 | 212 | 84 | 6 | 26 | 228 | 5 | 209 | 3.12e-72 | 219 |
| MS.gene038444.t1 | AT5G46710 | 59.627 | 161 | 57 | 3 | 1 | 159 | 1 | 155 | 1.65e-66 | 203 |
| MS.gene038444.t1 | AT1G43000 | 46.083 | 217 | 101 | 4 | 26 | 228 | 9 | 223 | 2.54e-62 | 194 |
| MS.gene038444.t1 | AT1G43000 | 46.083 | 217 | 101 | 4 | 26 | 228 | 2 | 216 | 3.41e-62 | 194 |
| MS.gene038444.t1 | AT2G27930 | 44.712 | 208 | 83 | 5 | 33 | 230 | 4 | 189 | 3.80e-53 | 170 |
| MS.gene038444.t1 | AT2G27930 | 44.712 | 208 | 83 | 5 | 33 | 230 | 4 | 189 | 3.80e-53 | 170 |
| MS.gene038444.t1 | AT2G27930 | 55.474 | 137 | 51 | 2 | 33 | 159 | 4 | 140 | 8.52e-49 | 158 |
| MS.gene038444.t1 | AT2G27930 | 55.474 | 137 | 51 | 2 | 33 | 159 | 4 | 140 | 8.52e-49 | 158 |
| MS.gene038444.t1 | AT2G12646 | 48.819 | 127 | 64 | 1 | 33 | 159 | 3 | 128 | 2.57e-37 | 131 |
| MS.gene038444.t1 | AT2G12646 | 48.819 | 127 | 64 | 1 | 33 | 159 | 6 | 131 | 2.74e-37 | 131 |
| MS.gene038444.t1 | AT2G12646 | 48.819 | 127 | 64 | 1 | 33 | 159 | 6 | 131 | 2.74e-37 | 131 |
| MS.gene038444.t1 | AT3G60670 | 37.949 | 195 | 105 | 3 | 28 | 221 | 2 | 181 | 2.03e-36 | 129 |
| MS.gene038444.t1 | AT1G31040 | 34.513 | 226 | 116 | 5 | 33 | 228 | 19 | 242 | 2.17e-34 | 123 |
| MS.gene038444.t1 | AT2G27930 | 45.455 | 154 | 53 | 4 | 86 | 230 | 61 | 192 | 5.72e-34 | 120 |
| MS.gene038444.t1 | AT2G27930 | 45.455 | 154 | 53 | 4 | 86 | 230 | 61 | 192 | 5.72e-34 | 120 |
| MS.gene038444.t1 | AT2G01818 | 34.579 | 214 | 115 | 9 | 35 | 228 | 13 | 221 | 3.66e-22 | 91.3 |
| MS.gene038444.t1 | AT2G01818 | 33.987 | 153 | 81 | 7 | 92 | 228 | 9 | 157 | 9.71e-11 | 58.9 |
Find 50 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAGATCATCGTGCTATTC+AGG | 0.214126 | 8.4:+35729286 | MS.gene038444:CDS |
| AGGAATTCCCTTTCTTCTTT+TGG | 0.234776 | 8.4:-35730853 | None:intergenic |
| GAGCTGACTTGTTCTTCTTC+TGG | 0.262316 | 8.4:-35730704 | None:intergenic |
| CCTTGCACTGTTGATAATAT+AGG | 0.282719 | 8.4:-35729885 | None:intergenic |
| CTTCATACCATGATGTGATT+AGG | 0.304121 | 8.4:+35729819 | MS.gene038444:CDS |
| TCCTTTCGATTCTGTTCTCT+TGG | 0.334164 | 8.4:+35729995 | MS.gene038444:CDS |
| AACTATGAATTCTAGATTGT+TGG | 0.377091 | 8.4:+35730666 | MS.gene038444:intron |
| TTCATACCATGATGTGATTA+GGG | 0.385029 | 8.4:+35729820 | MS.gene038444:CDS |
| CAGAAAGTGTTGGACATAAC+AGG | 0.395592 | 8.4:+35729854 | MS.gene038444:CDS |
| AGTATACTAGTCCTCCCATT+GGG | 0.414569 | 8.4:-35730884 | None:intergenic |
| TATTGTTTGGATTGTATGAA+TGG | 0.420599 | 8.4:+35729233 | MS.gene038444:CDS |
| TGAGTGCAATATGTATTGTT+TGG | 0.429253 | 8.4:+35729220 | MS.gene038444:CDS |
| TGGAAGACTCAAGAACATTA+AGG | 0.435594 | 8.4:+35730779 | MS.gene038444:CDS |
| GTCCTGATGATGAGGAAAAC+AGG | 0.450549 | 8.4:+35729120 | MS.gene038444:CDS |
| CACAGCAGCAGTTGCAGCCA+TGG | 0.460151 | 8.4:+35730759 | MS.gene038444:CDS |
| TAATGTTCTTGAGTCTTCCA+TGG | 0.472553 | 8.4:-35730776 | None:intergenic |
| GAATAGCACGATGATCTTTG+TGG | 0.487973 | 8.4:-35729283 | None:intergenic |
| ATTCCTCATCGTGCCCCAAT+GGG | 0.509643 | 8.4:+35730870 | MS.gene038444:CDS |
| CAGATCGGCCAAAAGAAGAA+AGG | 0.510241 | 8.4:+35730845 | MS.gene038444:CDS |
| CCTCAGCCAAGGCCCGGAAA+AGG | 0.511324 | 8.4:+35729929 | MS.gene038444:CDS |
| AAGAAACGCTCTTTGAGAAG+AGG | 0.515700 | 8.4:-35729161 | None:intergenic |
| ATTCTGTTCTCTTGGCTGCA+AGG | 0.521419 | 8.4:+35730003 | MS.gene038444:CDS |
| CCTATATTATCAACAGTGCA+AGG | 0.522886 | 8.4:+35729885 | MS.gene038444:CDS |
| GCCGATCTGTAATTGACTGT+TGG | 0.527628 | 8.4:-35730831 | None:intergenic |
| GAGAGGCCTCAGCCAAGGCC+CGG | 0.529902 | 8.4:+35729923 | MS.gene038444:CDS |
| AATTCCTCATCGTGCCCCAA+TGG | 0.532814 | 8.4:+35730869 | MS.gene038444:CDS |
| AGATCGGCCAAAAGAAGAAA+GGG | 0.533546 | 8.4:+35730846 | MS.gene038444:CDS |
| TAGTATACTAGTCCTCCCAT+TGG | 0.548247 | 8.4:-35730885 | None:intergenic |
| CTCGCAGACTTCACAAGTGT+TGG | 0.560178 | 8.4:-35729957 | None:intergenic |
| CTGTAATTGACTGTTGGTGG+TGG | 0.564886 | 8.4:-35730825 | None:intergenic |
| CATTCACCCTAATCACATCA+TGG | 0.571167 | 8.4:-35729826 | None:intergenic |
| GGGTTGTGTTCTTGAATGAG+AGG | 0.577373 | 8.4:+35729906 | MS.gene038444:CDS |
| GAATGAGATTCAGAAAGTGT+TGG | 0.585916 | 8.4:+35729844 | MS.gene038444:CDS |
| TTGAGAAGAGGTTTCAACCA+TGG | 0.588393 | 8.4:-35729149 | None:intergenic |
| GATCTGTAATTGACTGTTGG+TGG | 0.598799 | 8.4:-35730828 | None:intergenic |
| ACTGTTGGTGGTGGTGTCGA+AGG | 0.600407 | 8.4:-35730816 | None:intergenic |
| AGGAAAACAGGTGGCCACCA+TGG | 0.603560 | 8.4:+35729132 | MS.gene038444:CDS |
| CCTCATCGTGCCCCAATGGG+AGG | 0.612946 | 8.4:+35730873 | MS.gene038444:CDS |
| CCTCCCATTGGGGCACGATG+AGG | 0.616154 | 8.4:-35730873 | None:intergenic |
| TGAATGAGAGGCCTCAGCCA+AGG | 0.624070 | 8.4:+35729918 | MS.gene038444:CDS |
| GCCAAGAGAACAGAATCGAA+AGG | 0.631094 | 8.4:-35729996 | None:intergenic |
| AGAATCGAAAGGAATCGAGA+AGG | 0.635045 | 8.4:-35729985 | None:intergenic |
| TGCTGGAGGTCCTGATGATG+AGG | 0.642425 | 8.4:+35729112 | MS.gene038444:CDS |
| ACCAACAGTCAATTACAGAT+CGG | 0.643222 | 8.4:+35730830 | MS.gene038444:CDS |
| AGAAGAGGTTTCAACCATGG+TGG | 0.644229 | 8.4:-35729146 | None:intergenic |
| TTCAATGATATCAGACTCAG+AGG | 0.648076 | 8.4:+35730731 | MS.gene038444:CDS |
| TGTGTTTGTTACAGATAAGG+AGG | 0.651544 | 8.4:+35729795 | MS.gene038444:intron |
| CTATATTATCAACAGTGCAA+GGG | 0.657853 | 8.4:+35729886 | MS.gene038444:CDS |
| GTATACTAGTCCTCCCATTG+GGG | 0.661515 | 8.4:-35730883 | None:intergenic |
| CTGATGATGAGGAAAACAGG+TGG | 0.717367 | 8.4:+35729123 | MS.gene038444:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATTTGATAATTTTTTTGA+AGG | + | chr8.4:35729088-35729107 | MS.gene038444:intron | 10.0% |
| !!! | AATTTGATAATTTTTTTGAA+GGG | + | chr8.4:35729089-35729108 | MS.gene038444:intron | 10.0% |
| !!! | ATTATTATTACTACTATTTT+GGG | - | chr8.4:35730088-35730107 | None:intergenic | 10.0% |
| !!! | ATTTTAGAGAAAAAAAAAAT+TGG | + | chr8.4:35729012-35729031 | MS.gene038444:intron | 10.0% |
| !!! | TTTCAGTTTTATTTTTATTT+AGG | + | chr8.4:35728623-35728642 | MS.gene038444:intron | 10.0% |
| !!! | TTTTAGAGAAAAAAAAAATT+GGG | + | chr8.4:35729013-35729032 | MS.gene038444:intron | 10.0% |
| !! | TAAAAATTAAAAACAGCAAA+AGG | - | chr8.4:35729458-35729477 | None:intergenic | 15.0% |
| !!! | CTATTTAAAATATTGATCAA+TGG | + | chr8.4:35730386-35730405 | MS.gene038444:intron | 15.0% |
| !!! | GATTATTATTACTACTATTT+TGG | - | chr8.4:35730089-35730108 | None:intergenic | 15.0% |
| !!! | TAAACTAGTGTTAAATTTTT+TGG | + | chr8.4:35728530-35728549 | MS.gene038444:intron | 15.0% |
| !!! | TATTTGTGTTTTTAAATTCT+GGG | + | chr8.4:35728880-35728899 | MS.gene038444:intron | 15.0% |
| !!! | TTATTTGTGTTTTTAAATTC+TGG | + | chr8.4:35728879-35728898 | MS.gene038444:intron | 15.0% |
| !!! | TTGATCAATATTTTAAATAG+TGG | - | chr8.4:35730386-35730405 | None:intergenic | 15.0% |
| !! | AAATTGAATTGAATGCAAAA+AGG | - | chr8.4:35730571-35730590 | None:intergenic | 20.0% |
| !! | AACAATAAATGGGAATTTAT+GGG | - | chr8.4:35729494-35729513 | None:intergenic | 20.0% |
| !! | AATAATTGAATTGATTGTAG+TGG | - | chr8.4:35729623-35729642 | None:intergenic | 20.0% |
| !! | AATACAATAAATGTGTCAAA+GGG | - | chr8.4:35729388-35729407 | None:intergenic | 20.0% |
| !! | AATGACAAAATTTCAAATGT+TGG | - | chr8.4:35730537-35730556 | None:intergenic | 20.0% |
| !! | AATTGAATTGAATGCAAAAA+GGG | - | chr8.4:35730570-35730589 | None:intergenic | 20.0% |
| !! | ATAATCATGAATGCTAATAT+AGG | + | chr8.4:35730479-35730498 | MS.gene038444:intron | 20.0% |
| !! | ATGACAAAATTTCAAATGTT+GGG | - | chr8.4:35730536-35730555 | None:intergenic | 20.0% |
| !! | TATTATAGACTATTCTTATG+AGG | - | chr8.4:35730272-35730291 | None:intergenic | 20.0% |
| !!! | ATGAACTAGTGTTAATTTTT+TGG | + | chr8.4:35728674-35728693 | MS.gene038444:intron | 20.0% |
| !!! | ATTTGTTTTGATTGCAATTT+TGG | + | chr8.4:35730193-35730212 | MS.gene038444:intron | 20.0% |
| !!! | CAATATTTTAAATAGTGGAT+TGG | - | chr8.4:35730381-35730400 | None:intergenic | 20.0% |
| !!! | CATTATTTTATGAGTTAACT+TGG | + | chr8.4:35728976-35728995 | MS.gene038444:intron | 20.0% |
| !!! | TAGTACTGTTTTTGAATTTT+GGG | + | chr8.4:35728718-35728737 | MS.gene038444:intron | 20.0% |
| !!! | TATTTGTGATTTTGAATTGT+GGG | + | chr8.4:35729056-35729075 | MS.gene038444:intron | 20.0% |
| !!! | TCTTGTATTTTAGAGAATTA+CGG | - | chr8.4:35730307-35730326 | None:intergenic | 20.0% |
| !!! | TGAACTAGTGTTAATTTTTT+GGG | + | chr8.4:35728675-35728694 | MS.gene038444:intron | 20.0% |
| !!! | TTAGTACTGTTTTTGAATTT+TGG | + | chr8.4:35728717-35728736 | MS.gene038444:intron | 20.0% |
| !!! | TTATTTGTGATTTTGAATTG+TGG | + | chr8.4:35729055-35729074 | MS.gene038444:intron | 20.0% |
| ! | AAATTTCAAATGTTGGGTAT+AGG | - | chr8.4:35730530-35730549 | None:intergenic | 25.0% |
| ! | AACTATGAATTCTAGATTGT+TGG | + | chr8.4:35730666-35730685 | MS.gene038444:intron | 25.0% |
| ! | ATCTTATTCAAATGGTTAGA+AGG | - | chr8.4:35730060-35730079 | None:intergenic | 25.0% |
| ! | CATCAAAATCCTTGATTTAA+CGG | - | chr8.4:35730129-35730148 | None:intergenic | 25.0% |
| ! | GAACAATAAATGGGAATTTA+TGG | - | chr8.4:35729495-35729514 | None:intergenic | 25.0% |
| ! | GAATACAATAAATGTGTCAA+AGG | - | chr8.4:35729389-35729408 | None:intergenic | 25.0% |
| ! | TATTGTTTGGATTGTATGAA+TGG | + | chr8.4:35729233-35729252 | MS.gene038444:CDS | 25.0% |
| ! | TCTTATTCAAATGGTTAGAA+GGG | - | chr8.4:35730059-35730078 | None:intergenic | 25.0% |
| !! | ATTTGTGATTTTGAATTGTG+GGG | + | chr8.4:35729057-35729076 | MS.gene038444:intron | 25.0% |
| !! | TGTTTCGAATGTAATGTTTT+GGG | + | chr8.4:35728853-35728872 | MS.gene038444:intron | 25.0% |
| !! | TTGTTTCGAATGTAATGTTT+TGG | + | chr8.4:35728852-35728871 | MS.gene038444:intron | 25.0% |
| !!! | GAAATTTTGTCATTTCAGTA+TGG | + | chr8.4:35730543-35730562 | MS.gene038444:intron | 25.0% |
| !!! | TGTTTGTGTTTTTGAATTCT+GGG | + | chr8.4:35728574-35728593 | MS.gene038444:intron | 25.0% |
| !!! | TGTTTTGACTTTTGAATCTA+TGG | + | chr8.4:35730623-35730642 | MS.gene038444:intron | 25.0% |
| !!! | TTGTTTGTGTTTTTGAATTC+TGG | + | chr8.4:35728573-35728592 | MS.gene038444:intron | 25.0% |
| AACAACAGAGATCATTAGAA+AGG | - | chr8.4:35729771-35729790 | None:intergenic | 30.0% | |
| ATGGGAATTTATGGGATAAT+TGG | - | chr8.4:35729486-35729505 | None:intergenic | 30.0% | |
| ATTATTGTCATTGTTGTGTC+TGG | + | chr8.4:35729675-35729694 | MS.gene038444:intron | 30.0% | |
| CACAACTTTGATGAATTCAA+TGG | - | chr8.4:35729329-35729348 | None:intergenic | 30.0% | |
| CTATATTATCAACAGTGCAA+GGG | + | chr8.4:35729886-35729905 | MS.gene038444:CDS | 30.0% | |
| CTTATTCAAATGGTTAGAAG+GGG | - | chr8.4:35730058-35730077 | None:intergenic | 30.0% | |
| GGGAGTTAATCTTATTCAAA+TGG | - | chr8.4:35730068-35730087 | None:intergenic | 30.0% | |
| TGAGTGCAATATGTATTGTT+TGG | + | chr8.4:35729220-35729239 | MS.gene038444:CDS | 30.0% | |
| TTCATACCATGATGTGATTA+GGG | + | chr8.4:35729820-35729839 | MS.gene038444:CDS | 30.0% | |
| ! | AGCTTTTCAATGCAATAACA+TGG | + | chr8.4:35729740-35729759 | MS.gene038444:intron | 30.0% |
| ! | GTTTCGAATGTAATGTTTTG+GGG | + | chr8.4:35728854-35728873 | MS.gene038444:intron | 30.0% |
| ! | GTTTTTCTGACAACAAAAAC+AGG | - | chr8.4:35729411-35729430 | None:intergenic | 30.0% |
| !! | AAAAACCATCACTTTTCCTT+TGG | + | chr8.4:35729425-35729444 | MS.gene038444:intron | 30.0% |
| !! | TTTTGGGAATGCAATGATTT+TGG | + | chr8.4:35728691-35728710 | MS.gene038444:intron | 30.0% |
| !!! | ATAATTTTTTTGAAGGGTGC+TGG | + | chr8.4:35729095-35729114 | MS.gene038444:intron | 30.0% |
| !!! | TGTTTTTGGGCTTAATTTCA+CGG | - | chr8.4:35728400-35728419 | None:intergenic | 30.0% |
| ACCAACAGTCAATTACAGAT+CGG | + | chr8.4:35730830-35730849 | MS.gene038444:CDS | 35.0% | |
| ACCTCAATGCATTAACATTG+AGG | - | chr8.4:35730231-35730250 | None:intergenic | 35.0% | |
| ACCTCAATGTTAATGCATTG+AGG | + | chr8.4:35730227-35730246 | MS.gene038444:intron | 35.0% | |
| CAAATCCAAAGGAAAAGTGA+TGG | - | chr8.4:35729433-35729452 | None:intergenic | 35.0% | |
| CCTATATTATCAACAGTGCA+AGG | + | chr8.4:35729885-35729904 | MS.gene038444:CDS | 35.0% | |
| CTTCATACCATGATGTGATT+AGG | + | chr8.4:35729819-35729838 | MS.gene038444:CDS | 35.0% | |
| GGTGGTTACGAACAATAAAT+GGG | - | chr8.4:35729504-35729523 | None:intergenic | 35.0% | |
| GTGAAATTAAGCCCAAAAAC+AGG | + | chr8.4:35728399-35728418 | MS.gene038444:CDS | 35.0% | |
| TAATGTTCTTGAGTCTTCCA+TGG | - | chr8.4:35730779-35730798 | None:intergenic | 35.0% | |
| TGAACACACAATGAGATTCT+TGG | - | chr8.4:35728791-35728810 | None:intergenic | 35.0% | |
| TGATTTAACGGCCAAAAGTT+TGG | - | chr8.4:35730117-35730136 | None:intergenic | 35.0% | |
| TGGAAGACTCAAGAACATTA+AGG | + | chr8.4:35730779-35730798 | MS.gene038444:CDS | 35.0% | |
| TGGTGGTTACGAACAATAAA+TGG | - | chr8.4:35729505-35729524 | None:intergenic | 35.0% | |
| TTCAAGCTAGCACTTAAAGT+GGG | + | chr8.4:35730444-35730463 | MS.gene038444:intron | 35.0% | |
| TTCAATGATATCAGACTCAG+AGG | + | chr8.4:35730731-35730750 | MS.gene038444:CDS | 35.0% | |
| TTGACACCAACATCAAATGT+CGG | - | chr8.4:35729587-35729606 | None:intergenic | 35.0% | |
| TTTCAAGCTAGCACTTAAAG+TGG | + | chr8.4:35730443-35730462 | MS.gene038444:intron | 35.0% | |
| ! | AACTTTTGGCCGTTAAATCA+AGG | + | chr8.4:35730117-35730136 | MS.gene038444:intron | 35.0% |
| ! | AGGAATTCCCTTTCTTCTTT+TGG | - | chr8.4:35730856-35730875 | None:intergenic | 35.0% |
| ! | ATAATCCGCTACCAAACTTT+TGG | + | chr8.4:35730103-35730122 | MS.gene038444:intron | 35.0% |
| ! | GAATGAGATTCAGAAAGTGT+TGG | + | chr8.4:35729844-35729863 | MS.gene038444:CDS | 35.0% |
| ! | GACTTTTGAATCTATGGCAT+TGG | + | chr8.4:35730629-35730648 | MS.gene038444:intron | 35.0% |
| ! | GTGTGTGTTTGTTACAGATA+AGG | + | chr8.4:35729792-35729811 | MS.gene038444:intron | 35.0% |
| ! | TACCATGATTCTCCTGTTTT+TGG | - | chr8.4:35728414-35728433 | None:intergenic | 35.0% |
| ! | TGTGTTTGTTACAGATAAGG+AGG | + | chr8.4:35729795-35729814 | MS.gene038444:intron | 35.0% |
| !! | ACCATGATTCTCCTGTTTTT+GGG | - | chr8.4:35728413-35728432 | None:intergenic | 35.0% |
| !! | CATCACTTTTCCTTTGGATT+TGG | + | chr8.4:35729431-35729450 | MS.gene038444:intron | 35.0% |
| !! | CCTTGCACTGTTGATAATAT+AGG | - | chr8.4:35729888-35729907 | None:intergenic | 35.0% |
| AAGGGGAAGACATTATGTGA+AGG | - | chr8.4:35730041-35730060 | None:intergenic | 40.0% | |
| AGAATCGAAAGGAATCGAGA+AGG | - | chr8.4:35729988-35730007 | None:intergenic | 40.0% | |
| AGATCGGCCAAAAGAAGAAA+GGG | + | chr8.4:35730846-35730865 | MS.gene038444:CDS | 40.0% | |
| AGCAAAAGGACCAAATCCAA+AGG | - | chr8.4:35729444-35729463 | None:intergenic | 40.0% | |
| AGTATACTAGTCCTCCCATT+GGG | - | chr8.4:35730887-35730906 | None:intergenic | 40.0% | |
| CATTCACCCTAATCACATCA+TGG | - | chr8.4:35729829-35729848 | None:intergenic | 40.0% | |
| GAATAGCACGATGATCTTTG+TGG | - | chr8.4:35729286-35729305 | None:intergenic | 40.0% | |
| GATCTGTAATTGACTGTTGG+TGG | - | chr8.4:35730831-35730850 | None:intergenic | 40.0% | |
| TAGTATACTAGTCCTCCCAT+TGG | - | chr8.4:35730888-35730907 | None:intergenic | 40.0% | |
| TCCTTTCGATTCTGTTCTCT+TGG | + | chr8.4:35729995-35730014 | MS.gene038444:CDS | 40.0% | |
| TTGAGAAGAGGTTTCAACCA+TGG | - | chr8.4:35729152-35729171 | None:intergenic | 40.0% | |
| ! | AAGAAACGCTCTTTGAGAAG+AGG | - | chr8.4:35729164-35729183 | None:intergenic | 40.0% |
| ! | CAAAGATCATCGTGCTATTC+AGG | + | chr8.4:35729286-35729305 | MS.gene038444:CDS | 40.0% |
| !! | CAGAAAGTGTTGGACATAAC+AGG | + | chr8.4:35729854-35729873 | MS.gene038444:CDS | 40.0% |
| !! | TTGATGTTGGTGTCAAATGC+CGG | + | chr8.4:35729591-35729610 | MS.gene038444:intron | 40.0% |
| !!! | ATTTTTTTGAAGGGTGCTGG+AGG | + | chr8.4:35729098-35729117 | MS.gene038444:intron | 40.0% |
| AACGGCCAAAAGTTTGGTAG+CGG | - | chr8.4:35730111-35730130 | None:intergenic | 45.0% | |
| AGAAGAGGTTTCAACCATGG+TGG | - | chr8.4:35729149-35729168 | None:intergenic | 45.0% | |
| AGCTCACACACTCTCATTGT+TGG | + | chr8.4:35728482-35728501 | MS.gene038444:intron | 45.0% | |
| ATGCGACACTGAACTAGACA+CGG | - | chr8.4:35729704-35729723 | None:intergenic | 45.0% | |
| ATTCTGTTCTCTTGGCTGCA+AGG | + | chr8.4:35730003-35730022 | MS.gene038444:CDS | 45.0% | |
| CAATCTAAACCATCGATGCG+TGG | - | chr8.4:35729525-35729544 | None:intergenic | 45.0% | |
| CAGACACCGACATTTGATGT+TGG | + | chr8.4:35729578-35729597 | MS.gene038444:intron | 45.0% | |
| CAGATCGGCCAAAAGAAGAA+AGG | + | chr8.4:35730845-35730864 | MS.gene038444:CDS | 45.0% | |
| GCCAAGAGAACAGAATCGAA+AGG | - | chr8.4:35729999-35730018 | None:intergenic | 45.0% | |
| GCCCAAAAACAGGAGAATCA+TGG | + | chr8.4:35728409-35728428 | MS.gene038444:CDS | 45.0% | |
| GCCGATCTGTAATTGACTGT+TGG | - | chr8.4:35730834-35730853 | None:intergenic | 45.0% | |
| GGGTTGTGTTCTTGAATGAG+AGG | + | chr8.4:35729906-35729925 | MS.gene038444:CDS | 45.0% | |
| GTATACTAGTCCTCCCATTG+GGG | - | chr8.4:35730886-35730905 | None:intergenic | 45.0% | |
| TGTCTGACACCAACATGTGT+CGG | - | chr8.4:35729564-35729583 | None:intergenic | 45.0% | |
| TTGATTGTAGTGGCAGACAC+CGG | - | chr8.4:35729613-35729632 | None:intergenic | 45.0% | |
| ! | CACCTGTTTTCCTCATCATC+AGG | - | chr8.4:35729125-35729144 | None:intergenic | 45.0% |
| ! | CTGATGATGAGGAAAACAGG+TGG | + | chr8.4:35729123-35729142 | MS.gene038444:CDS | 45.0% |
| ! | CTGTAATTGACTGTTGGTGG+TGG | - | chr8.4:35730828-35730847 | None:intergenic | 45.0% |
| ! | GTCCTGATGATGAGGAAAAC+AGG | + | chr8.4:35729120-35729139 | MS.gene038444:CDS | 45.0% |
| !! | GAGCTGACTTGTTCTTCTTC+TGG | - | chr8.4:35730707-35730726 | None:intergenic | 45.0% |
| !!! | AGTGTTGGTGACACCTTTTC+CGG | - | chr8.4:35729945-35729964 | None:intergenic | 45.0% |
| AATTCCTCATCGTGCCCCAA+TGG | + | chr8.4:35730869-35730888 | MS.gene038444:CDS | 50.0% | |
| ACACCAACATGTGTCGGACA+GGG | - | chr8.4:35729558-35729577 | None:intergenic | 50.0% | |
| ATTCCTCATCGTGCCCCAAT+GGG | + | chr8.4:35730870-35730889 | MS.gene038444:CDS | 50.0% | |
| CTCGCAGACTTCACAAGTGT+TGG | - | chr8.4:35729960-35729979 | None:intergenic | 50.0% | |
| TCTAAACCATCGATGCGTGG+TGG | - | chr8.4:35729522-35729541 | None:intergenic | 50.0% | |
| !!! | GTGTTGGTGACACCTTTTCC+GGG | - | chr8.4:35729944-35729963 | None:intergenic | 50.0% |
| AGGAAAACAGGTGGCCACCA+TGG | + | chr8.4:35729132-35729151 | MS.gene038444:CDS | 55.0% | |
| GACACCAACATGTGTCGGAC+AGG | - | chr8.4:35729559-35729578 | None:intergenic | 55.0% | |
| GTTCCCTGTCCGACACATGT+TGG | + | chr8.4:35729552-35729571 | MS.gene038444:intron | 55.0% | |
| TCGTAACCACCACGCATCGA+TGG | + | chr8.4:35729513-35729532 | MS.gene038444:intron | 55.0% | |
| TGAATGAGAGGCCTCAGCCA+AGG | + | chr8.4:35729918-35729937 | MS.gene038444:CDS | 55.0% | |
| ! | TGCTGGAGGTCCTGATGATG+AGG | + | chr8.4:35729112-35729131 | MS.gene038444:CDS | 55.0% |
| !! | ACTGTTGGTGGTGGTGTCGA+AGG | - | chr8.4:35730819-35730838 | None:intergenic | 55.0% |
| CACAGCAGCAGTTGCAGCCA+TGG | + | chr8.4:35730759-35730778 | MS.gene038444:CDS | 60.0% | |
| ! | GTGACACCTTTTCCGGGCCT+TGG | - | chr8.4:35729938-35729957 | None:intergenic | 60.0% |
| CCTCAGCCAAGGCCCGGAAA+AGG | + | chr8.4:35729929-35729948 | MS.gene038444:CDS | 65.0% | |
| CCTCATCGTGCCCCAATGGG+AGG | + | chr8.4:35730873-35730892 | MS.gene038444:CDS | 65.0% | |
| CCTCCCATTGGGGCACGATG+AGG | - | chr8.4:35730876-35730895 | None:intergenic | 65.0% | |
| ! | CCTTTTCCGGGCCTTGGCTG+AGG | - | chr8.4:35729932-35729951 | None:intergenic | 65.0% |
| GAGAGGCCTCAGCCAAGGCC+CGG | + | chr8.4:35729923-35729942 | MS.gene038444:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 35728371 | 35730908 | 35728371 | ID=MS.gene038444 |
| chr8.4 | mRNA | 35728371 | 35730908 | 35728371 | ID=MS.gene038444.t1;Parent=MS.gene038444 |
| chr8.4 | exon | 35728371 | 35728430 | 35728371 | ID=MS.gene038444.t1.exon1;Parent=MS.gene038444.t1 |
| chr8.4 | CDS | 35728371 | 35728430 | 35728371 | ID=cds.MS.gene038444.t1;Parent=MS.gene038444.t1 |
| chr8.4 | exon | 35729110 | 35729307 | 35729110 | ID=MS.gene038444.t1.exon2;Parent=MS.gene038444.t1 |
| chr8.4 | CDS | 35729110 | 35729307 | 35729110 | ID=cds.MS.gene038444.t1;Parent=MS.gene038444.t1 |
| chr8.4 | exon | 35729809 | 35730024 | 35729809 | ID=MS.gene038444.t1.exon3;Parent=MS.gene038444.t1 |
| chr8.4 | CDS | 35729809 | 35730024 | 35729809 | ID=cds.MS.gene038444.t1;Parent=MS.gene038444.t1 |
| chr8.4 | exon | 35730681 | 35730908 | 35730681 | ID=MS.gene038444.t1.exon4;Parent=MS.gene038444.t1 |
| chr8.4 | CDS | 35730681 | 35730908 | 35730681 | ID=cds.MS.gene038444.t1;Parent=MS.gene038444.t1 |
| Gene Sequence |
| Protein sequence |
