Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038446.t1 | AET03267.1 | 97.7 | 213 | 5 | 0 | 22 | 234 | 100 | 312 | 5.00E-108 | 400.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038446.t1 | Q9SK91 | 53.4 | 206 | 92 | 2 | 23 | 228 | 102 | 303 | 5.2e-53 | 209.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038446.t1 | G7LH18 | 97.7 | 213 | 5 | 0 | 22 | 234 | 100 | 312 | 3.6e-108 | 400.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038446.t1 | TF | bHLH |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038446.t1 | MTR_8g066770 | 97.863 | 234 | 5 | 0 | 1 | 234 | 79 | 312 | 1.31e-172 | 477 |
| MS.gene038446.t1 | MTR_3g099620 | 54.425 | 226 | 84 | 3 | 16 | 228 | 96 | 315 | 2.10e-81 | 246 |
| MS.gene038446.t1 | MTR_7g113830 | 52.466 | 223 | 93 | 3 | 16 | 231 | 96 | 312 | 1.77e-73 | 226 |
| MS.gene038446.t1 | MTR_1g082480 | 53.052 | 213 | 85 | 2 | 29 | 231 | 129 | 336 | 3.75e-73 | 226 |
| MS.gene038446.t1 | MTR_5g064950 | 50.679 | 221 | 102 | 3 | 15 | 230 | 79 | 297 | 5.05e-69 | 214 |
| MS.gene038446.t1 | MTR_1g082480 | 53.261 | 184 | 71 | 2 | 29 | 202 | 129 | 307 | 1.63e-61 | 196 |
| MS.gene038446.t1 | MTR_5g064950 | 50.259 | 193 | 89 | 3 | 15 | 202 | 79 | 269 | 8.45e-59 | 188 |
| MS.gene038446.t1 | MTR_0194s0050 | 46.610 | 236 | 109 | 6 | 9 | 231 | 156 | 387 | 9.70e-58 | 187 |
| MS.gene038446.t1 | MTR_8g024210 | 49.500 | 200 | 92 | 2 | 26 | 225 | 171 | 361 | 1.48e-53 | 176 |
| MS.gene038446.t1 | MTR_2g022280 | 36.782 | 174 | 107 | 2 | 36 | 208 | 1 | 172 | 4.41e-36 | 126 |
| MS.gene038446.t1 | MTR_3g090850 | 36.548 | 197 | 84 | 3 | 34 | 189 | 99 | 295 | 5.48e-35 | 127 |
| MS.gene038446.t1 | MTR_1g028470 | 30.909 | 220 | 132 | 2 | 11 | 210 | 62 | 281 | 4.45e-29 | 110 |
| MS.gene038446.t1 | MTR_5g030430 | 26.943 | 193 | 134 | 3 | 14 | 206 | 474 | 659 | 2.99e-13 | 68.9 |
| MS.gene038446.t1 | MTR_1g112680 | 28.934 | 197 | 109 | 7 | 16 | 194 | 305 | 488 | 2.18e-12 | 66.2 |
| MS.gene038446.t1 | MTR_8g067280 | 29.319 | 191 | 126 | 4 | 16 | 206 | 447 | 628 | 6.61e-12 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038446.t1 | AT1G72210 | 56.872 | 211 | 82 | 3 | 25 | 231 | 114 | 319 | 5.13e-72 | 222 |
| MS.gene038446.t1 | AT1G22490 | 53.922 | 204 | 90 | 2 | 25 | 228 | 104 | 303 | 2.88e-70 | 217 |
| MS.gene038446.t1 | AT5G46690 | 55.263 | 228 | 80 | 4 | 23 | 228 | 75 | 302 | 2.78e-65 | 205 |
| MS.gene038446.t1 | AT1G72210 | 56.593 | 182 | 70 | 3 | 25 | 202 | 114 | 290 | 6.10e-60 | 191 |
| MS.gene038446.t1 | AT1G22490 | 53.371 | 178 | 79 | 2 | 25 | 202 | 104 | 277 | 1.07e-58 | 188 |
| MS.gene038446.t1 | AT3G24140 | 42.797 | 236 | 121 | 3 | 3 | 225 | 162 | 396 | 4.85e-54 | 179 |
| MS.gene038446.t1 | AT3G24140 | 42.797 | 236 | 121 | 3 | 3 | 225 | 162 | 396 | 6.58e-54 | 179 |
| MS.gene038446.t1 | AT5G46690 | 53.465 | 202 | 72 | 4 | 23 | 202 | 75 | 276 | 1.85e-52 | 171 |
| MS.gene038446.t1 | AT4G01460 | 44.118 | 204 | 111 | 2 | 26 | 228 | 105 | 306 | 6.61e-49 | 163 |
| MS.gene038446.t1 | AT4G01460 | 44.118 | 204 | 111 | 2 | 26 | 228 | 105 | 306 | 6.61e-49 | 163 |
| MS.gene038446.t1 | AT5G65320 | 41.429 | 210 | 102 | 4 | 30 | 228 | 96 | 295 | 1.69e-44 | 151 |
| MS.gene038446.t1 | AT2G46810 | 43.216 | 199 | 99 | 4 | 27 | 223 | 112 | 298 | 1.95e-40 | 140 |
| MS.gene038446.t1 | AT3G61950 | 43.350 | 203 | 94 | 5 | 26 | 223 | 117 | 303 | 2.76e-40 | 140 |
| MS.gene038446.t1 | AT2G46810 | 43.434 | 198 | 100 | 4 | 27 | 223 | 172 | 358 | 3.85e-40 | 141 |
| MS.gene038446.t1 | AT5G65320 | 42.623 | 183 | 85 | 3 | 30 | 202 | 96 | 268 | 4.34e-40 | 139 |
| MS.gene038446.t1 | AT2G46810 | 43.216 | 199 | 99 | 4 | 27 | 223 | 184 | 370 | 7.48e-40 | 141 |
| MS.gene038446.t1 | AT3G61950 | 43.350 | 203 | 94 | 5 | 26 | 223 | 168 | 354 | 9.36e-40 | 140 |
| MS.gene038446.t1 | AT3G61950 | 44.970 | 169 | 73 | 4 | 25 | 189 | 116 | 268 | 2.44e-37 | 132 |
| MS.gene038446.t1 | AT3G61950 | 45.238 | 168 | 72 | 4 | 26 | 189 | 168 | 319 | 9.70e-37 | 132 |
| MS.gene038446.t1 | AT2G46810 | 44.944 | 178 | 84 | 4 | 27 | 202 | 112 | 277 | 5.07e-35 | 127 |
| MS.gene038446.t1 | AT3G06120 | 34.659 | 176 | 103 | 2 | 36 | 202 | 1 | 173 | 2.33e-31 | 114 |
| MS.gene038446.t1 | AT5G53210 | 62.338 | 77 | 28 | 1 | 27 | 103 | 94 | 169 | 7.89e-26 | 103 |
| MS.gene038446.t1 | AT5G53210 | 66.667 | 69 | 22 | 1 | 27 | 95 | 94 | 161 | 8.91e-26 | 103 |
| MS.gene038446.t1 | AT3G61950 | 67.442 | 43 | 14 | 0 | 25 | 67 | 167 | 209 | 5.87e-13 | 66.2 |
| MS.gene038446.t1 | AT3G61950 | 67.442 | 43 | 14 | 0 | 25 | 67 | 167 | 209 | 5.87e-13 | 66.2 |
| MS.gene038446.t1 | AT1G32640 | 25.490 | 204 | 109 | 6 | 16 | 208 | 437 | 608 | 9.75e-11 | 61.6 |
Find 42 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCAATTCTTCCAAGTAAA+TGG | 0.199817 | 8.4:+35791171 | None:intergenic |
| TTGTCCTAGTGAGAATTCTA+AGG | 0.334781 | 8.4:+35791925 | None:intergenic |
| ACCCTTTGAACATAGGATTC+AGG | 0.351099 | 8.4:+35792926 | None:intergenic |
| ATGTGTATTTGTTAGGTGTT+TGG | 0.351401 | 8.4:+35792006 | None:intergenic |
| GTCTTGGATGTGTATTTGTT+AGG | 0.355555 | 8.4:+35791999 | None:intergenic |
| AGCTATGGCAGCTTTGGTCT+TGG | 0.365189 | 8.4:+35791983 | None:intergenic |
| TCTTTGTTCTTACAAACTCT+TGG | 0.388402 | 8.4:+35793043 | None:intergenic |
| TGTGTATTTGTTAGGTGTTT+GGG | 0.389980 | 8.4:+35792007 | None:intergenic |
| TAGCTCCTTCACAAACTCTA+TGG | 0.424567 | 8.4:+35792163 | None:intergenic |
| ACAGCAGTTCACCATTTACT+TGG | 0.428976 | 8.4:-35791182 | MS.gene038446:CDS |
| GATATCAGCTATGGCAGCTT+TGG | 0.431877 | 8.4:+35791977 | None:intergenic |
| ACTAATTTAGTTAGTTGTCC+TGG | 0.441622 | 8.4:+35791900 | None:intergenic |
| TGTCACTACCATACAACCTT+TGG | 0.451551 | 8.4:-35791835 | MS.gene038446:CDS |
| AAAACAAACCCTTTGAACAT+AGG | 0.458862 | 8.4:+35792919 | None:intergenic |
| AGGACAACTAACTAAATTAG+TGG | 0.470600 | 8.4:-35791898 | MS.gene038446:CDS |
| GTAGAATACCAAAGGTTGTA+TGG | 0.472728 | 8.4:+35791827 | None:intergenic |
| GCCTGAATCCTATGTTCAAA+GGG | 0.476318 | 8.4:-35792927 | MS.gene038446:intron |
| TTGTGTATCCTCAATATACA+TGG | 0.490488 | 8.4:-35792031 | MS.gene038446:CDS |
| CCATTTACTTGGAAGAATTG+AGG | 0.491479 | 8.4:-35791171 | MS.gene038446:CDS |
| ATGTATATGAAGGTTGAAGA+AGG | 0.503265 | 8.4:-35791236 | MS.gene038446:intron |
| GTTTGGGACCATGTATATTG+AGG | 0.512489 | 8.4:+35792023 | None:intergenic |
| GGTGACCAAGCCTCAATAGT+AGG | 0.516200 | 8.4:-35792191 | MS.gene038446:CDS |
| CATTGATATGTAGGATGCTA+AGG | 0.516296 | 8.4:+35791856 | None:intergenic |
| TTCCAACTTGGTTCAGTAGA+CGG | 0.525532 | 8.4:-35791212 | MS.gene038446:CDS |
| TGCCTGAATCCTATGTTCAA+AGG | 0.527020 | 8.4:-35792928 | MS.gene038446:CDS |
| CAACTAACTAAATTAGTGGC+TGG | 0.528440 | 8.4:-35791894 | MS.gene038446:CDS |
| GTTGAAGAAGGATTCCAACT+TGG | 0.528504 | 8.4:-35791224 | MS.gene038446:CDS |
| CACCACCTACTATTGAGGCT+TGG | 0.549608 | 8.4:+35792186 | None:intergenic |
| TGGTAGTGACATTGATATGT+AGG | 0.552077 | 8.4:+35791847 | None:intergenic |
| TTCCGTCTACTGAACCAAGT+TGG | 0.552934 | 8.4:+35791210 | None:intergenic |
| AACAATGAATAATCCTCAAG+TGG | 0.569610 | 8.4:-35793092 | MS.gene038446:CDS |
| TGTAACCTCGATATCAGCTA+TGG | 0.576417 | 8.4:+35791968 | None:intergenic |
| CAAACCTTAGAATTCTCACT+AGG | 0.582899 | 8.4:-35791929 | MS.gene038446:CDS |
| ATAATCCTCAAGTGGTGCAA+AGG | 0.583756 | 8.4:-35793084 | MS.gene038446:CDS |
| TATGGCACCACCTACTATTG+AGG | 0.605310 | 8.4:+35792181 | None:intergenic |
| ATTCTACTCTATCAGTGCCA+AGG | 0.611555 | 8.4:-35791811 | MS.gene038446:intron |
| ATTCTCACTAGGACAAGACC+AGG | 0.613739 | 8.4:-35791918 | MS.gene038446:CDS |
| CTGATAGAGTAGAATACCAA+AGG | 0.629072 | 8.4:+35791819 | None:intergenic |
| AGCACAAAACAATGAAGACA+TGG | 0.633394 | 8.4:-35792084 | MS.gene038446:CDS |
| AGCTGCCATAGCTGATATCG+AGG | 0.641430 | 8.4:-35791973 | MS.gene038446:CDS |
| GACCAAGCCTCAATAGTAGG+TGG | 0.661400 | 8.4:-35792188 | MS.gene038446:CDS |
| TGGTGCCATAGAGTTTGTGA+AGG | 0.669387 | 8.4:-35792168 | MS.gene038446:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTTTATTTTAA+TGG | - | chr8.4:35792860-35792879 | MS.gene038446:intron | 0.0% |
| !! | ATATTTAGCTAAAATATATA+TGG | - | chr8.4:35792961-35792980 | MS.gene038446:CDS | 10.0% |
| !! | TTATTTATTTATGTATATGA+AGG | - | chr8.4:35793005-35793024 | MS.gene038446:CDS | 10.0% |
| !!! | CAATTTTTTGTTTTGTTATA+GGG | - | chr8.4:35792039-35792058 | MS.gene038446:CDS | 15.0% |
| !!! | GAATTTTCATAATTTATACA+AGG | + | chr8.4:35792935-35792954 | None:intergenic | 15.0% |
| !! | AAAGCAAAAGAAAGAAAAAA+TGG | + | chr8.4:35791626-35791645 | None:intergenic | 20.0% |
| !! | ATTACTATCATATCAAATGA+AGG | + | chr8.4:35792483-35792502 | None:intergenic | 20.0% |
| !! | ATTTATACATATACTTCTTG+CGG | - | chr8.4:35791681-35791700 | MS.gene038446:intron | 20.0% |
| !! | GAAAATAATTAGAGATAGAA+AGG | + | chr8.4:35792700-35792719 | None:intergenic | 20.0% |
| !!! | AATTTTTGTTGTTTATCACT+TGG | + | chr8.4:35792808-35792827 | None:intergenic | 20.0% |
| !!! | GCAATTTTTTGTTTTGTTAT+AGG | - | chr8.4:35792038-35792057 | MS.gene038446:CDS | 20.0% |
| !!! | TAATCTTTACAAGTTCTAAA+TGG | - | chr8.4:35791990-35792009 | MS.gene038446:CDS | 20.0% |
| !!! | TACTTCATTTTTTTGTTGTT+GGG | - | chr8.4:35791381-35791400 | MS.gene038446:intron | 20.0% |
| !!! | TATATATGAAGCTTTTCAAA+TGG | + | chr8.4:35791963-35791982 | None:intergenic | 20.0% |
| ! | AATGTTACCATAATTTCAAC+TGG | + | chr8.4:35791858-35791877 | None:intergenic | 25.0% |
| ! | ATGTTACCATAATTTCAACT+GGG | + | chr8.4:35791857-35791876 | None:intergenic | 25.0% |
| ! | TACACAAAAAATTGTGCAAA+AGG | + | chr8.4:35792207-35792226 | None:intergenic | 25.0% |
| !! | TCATATTTAGAGTTGCATTA+TGG | - | chr8.4:35791735-35791754 | MS.gene038446:intron | 25.0% |
| !!! | GTACTTCATTTTTTTGTTGT+TGG | - | chr8.4:35791380-35791399 | MS.gene038446:intron | 25.0% |
| !!! | GTTCATTCATTTGTTTTCTA+CGG | + | chr8.4:35791279-35791298 | None:intergenic | 25.0% |
| !!! | TAATGTTTTTGATGTCTTTG+AGG | + | chr8.4:35791830-35791849 | None:intergenic | 25.0% |
| !!! | TTCTTTCTTTTGCTTTTGTA+TGG | - | chr8.4:35791630-35791649 | MS.gene038446:intron | 25.0% |
| AAAACAAACCCTTTGAACAT+AGG | + | chr8.4:35791335-35791354 | None:intergenic | 30.0% | |
| AACAATGAATAATCCTCAAG+TGG | - | chr8.4:35791159-35791178 | MS.gene038446:CDS | 30.0% | |
| ACAAAAAATTGTGCAAAAGG+TGG | + | chr8.4:35792204-35792223 | None:intergenic | 30.0% | |
| ACACTTTATGACTATCAATG+AGG | - | chr8.4:35791520-35791539 | MS.gene038446:intron | 30.0% | |
| ACTAATTTAGTTAGTTGTCC+TGG | + | chr8.4:35792354-35792373 | None:intergenic | 30.0% | |
| AGGACAACTAACTAAATTAG+TGG | - | chr8.4:35792353-35792372 | MS.gene038446:intron | 30.0% | |
| ATCAATATAGTTGCATACCT+TGG | + | chr8.4:35792460-35792479 | None:intergenic | 30.0% | |
| ATGTATATGAAGGTTGAAGA+AGG | - | chr8.4:35793015-35793034 | MS.gene038446:CDS | 30.0% | |
| ATTTCCCTTAATAGCAAGAT+TGG | - | chr8.4:35791429-35791448 | MS.gene038446:intron | 30.0% | |
| GCAAAAGAAAGAAAAAATGG+AGG | + | chr8.4:35791623-35791642 | None:intergenic | 30.0% | |
| TAATGTCCCAGTTGAAATTA+TGG | - | chr8.4:35791848-35791867 | MS.gene038446:CDS | 30.0% | |
| TCTTTGTTCTTACAAACTCT+TGG | + | chr8.4:35791211-35791230 | None:intergenic | 30.0% | |
| TGCTTTGTGAAAGATGTAAT+AGG | - | chr8.4:35791568-35791587 | MS.gene038446:intron | 30.0% | |
| TTGTGTATCCTCAATATACA+TGG | - | chr8.4:35792220-35792239 | MS.gene038446:intron | 30.0% | |
| TTTATGACTATCAATGAGGT+GGG | - | chr8.4:35791524-35791543 | MS.gene038446:intron | 30.0% | |
| TTTCCCTTAATAGCAAGATT+GGG | - | chr8.4:35791430-35791449 | MS.gene038446:intron | 30.0% | |
| ! | AAGCATATTTGTGCATGTTT+TGG | + | chr8.4:35791553-35791572 | None:intergenic | 30.0% |
| ! | ATGTGTATTTGTTAGGTGTT+TGG | + | chr8.4:35792248-35792267 | None:intergenic | 30.0% |
| ! | CTGTGATTTAAAACCTTGTT+TGG | + | chr8.4:35791709-35791728 | None:intergenic | 30.0% |
| ! | TGTGTATTTGTTAGGTGTTT+GGG | + | chr8.4:35792247-35792266 | None:intergenic | 30.0% |
| AGCACAAAACAATGAAGACA+TGG | - | chr8.4:35792167-35792186 | MS.gene038446:CDS | 35.0% | |
| CAAACCTTAGAATTCTCACT+AGG | - | chr8.4:35792322-35792341 | MS.gene038446:intron | 35.0% | |
| CAACTAACTAAATTAGTGGC+TGG | - | chr8.4:35792357-35792376 | MS.gene038446:intron | 35.0% | |
| CATTGATATGTAGGATGCTA+AGG | + | chr8.4:35792398-35792417 | None:intergenic | 35.0% | |
| CCATTTACTTGGAAGAATTG+AGG | - | chr8.4:35793080-35793099 | MS.gene038446:CDS | 35.0% | |
| CCTCAATTCTTCCAAGTAAA+TGG | + | chr8.4:35793083-35793102 | None:intergenic | 35.0% | |
| CTGATAGAGTAGAATACCAA+AGG | + | chr8.4:35792435-35792454 | None:intergenic | 35.0% | |
| CTTTATGACTATCAATGAGG+TGG | - | chr8.4:35791523-35791542 | MS.gene038446:intron | 35.0% | |
| GTAGAATACCAAAGGTTGTA+TGG | + | chr8.4:35792427-35792446 | None:intergenic | 35.0% | |
| GTCTTGGATGTGTATTTGTT+AGG | + | chr8.4:35792255-35792274 | None:intergenic | 35.0% | |
| TTGTCCTAGTGAGAATTCTA+AGG | + | chr8.4:35792329-35792348 | None:intergenic | 35.0% | |
| ! | TGGTAGTGACATTGATATGT+AGG | + | chr8.4:35792407-35792426 | None:intergenic | 35.0% |
| !! | ATCTCCCAATCTTGCTATTA+AGG | + | chr8.4:35791437-35791456 | None:intergenic | 35.0% |
| !! | TCTCCCAATCTTGCTATTAA+GGG | + | chr8.4:35791436-35791455 | None:intergenic | 35.0% |
| AAGTGGTGCAAAGGAAAAAG+AGG | - | chr8.4:35791176-35791195 | MS.gene038446:CDS | 40.0% | |
| ACAGCAGTTCACCATTTACT+TGG | - | chr8.4:35793069-35793088 | MS.gene038446:CDS | 40.0% | |
| ACCCTTTGAACATAGGATTC+AGG | + | chr8.4:35791328-35791347 | None:intergenic | 40.0% | |
| ATAATCCTCAAGTGGTGCAA+AGG | - | chr8.4:35791167-35791186 | MS.gene038446:CDS | 40.0% | |
| ATTCTACTCTATCAGTGCCA+AGG | - | chr8.4:35792440-35792459 | MS.gene038446:intron | 40.0% | |
| ATTGAGTCTATGGTTAAGCG+CGG | + | chr8.4:35791807-35791826 | None:intergenic | 40.0% | |
| GCCTGAATCCTATGTTCAAA+GGG | - | chr8.4:35791324-35791343 | MS.gene038446:intron | 40.0% | |
| GTTGAAGAAGGATTCCAACT+TGG | - | chr8.4:35793027-35793046 | MS.gene038446:CDS | 40.0% | |
| TAGCTCCTTCACAAACTCTA+TGG | + | chr8.4:35792091-35792110 | None:intergenic | 40.0% | |
| TGCCTGAATCCTATGTTCAA+AGG | - | chr8.4:35791323-35791342 | MS.gene038446:intron | 40.0% | |
| TGTAACCTCGATATCAGCTA+TGG | + | chr8.4:35792286-35792305 | None:intergenic | 40.0% | |
| TGTCACTACCATACAACCTT+TGG | - | chr8.4:35792416-35792435 | MS.gene038446:intron | 40.0% | |
| TTCCAACTTGGTTCAGTAGA+CGG | - | chr8.4:35793039-35793058 | MS.gene038446:CDS | 40.0% | |
| ! | GTCTTTGAGGATTGAGTCTA+TGG | + | chr8.4:35791817-35791836 | None:intergenic | 40.0% |
| ! | GTTTGGGACCATGTATATTG+AGG | + | chr8.4:35792231-35792250 | None:intergenic | 40.0% |
| ! | TTTTTCCTTTGCACCACTTG+AGG | + | chr8.4:35791175-35791194 | None:intergenic | 40.0% |
| ACTTCTTGCGGTACCAAACA+AGG | - | chr8.4:35791693-35791712 | MS.gene038446:intron | 45.0% | |
| ATTCTCACTAGGACAAGACC+AGG | - | chr8.4:35792333-35792352 | MS.gene038446:intron | 45.0% | |
| GATATCAGCTATGGCAGCTT+TGG | + | chr8.4:35792277-35792296 | None:intergenic | 45.0% | |
| TATGGCACCACCTACTATTG+AGG | + | chr8.4:35792073-35792092 | None:intergenic | 45.0% | |
| TTCCGTCTACTGAACCAAGT+TGG | + | chr8.4:35793044-35793063 | None:intergenic | 45.0% | |
| !! | TGGTGCCATAGAGTTTGTGA+AGG | - | chr8.4:35792083-35792102 | MS.gene038446:CDS | 45.0% |
| AGCTGCCATAGCTGATATCG+AGG | - | chr8.4:35792278-35792297 | MS.gene038446:intron | 50.0% | |
| CACCACCTACTATTGAGGCT+TGG | + | chr8.4:35792068-35792087 | None:intergenic | 50.0% | |
| GACCAAGCCTCAATAGTAGG+TGG | - | chr8.4:35792063-35792082 | MS.gene038446:CDS | 50.0% | |
| GGTGACCAAGCCTCAATAGT+AGG | - | chr8.4:35792060-35792079 | MS.gene038446:CDS | 50.0% | |
| ! | AGCTATGGCAGCTTTGGTCT+TGG | + | chr8.4:35792271-35792290 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 35791145 | 35793128 | 35791145 | ID=MS.gene038446 |
| chr8.4 | mRNA | 35791145 | 35793128 | 35791145 | ID=MS.gene038446.t1;Parent=MS.gene038446 |
| chr8.4 | exon | 35792928 | 35793128 | 35792928 | ID=MS.gene038446.t1.exon1;Parent=MS.gene038446.t1 |
| chr8.4 | CDS | 35792928 | 35793128 | 35792928 | ID=cds.MS.gene038446.t1;Parent=MS.gene038446.t1 |
| chr8.4 | exon | 35791812 | 35792213 | 35791812 | ID=MS.gene038446.t1.exon2;Parent=MS.gene038446.t1 |
| chr8.4 | CDS | 35791812 | 35792213 | 35791812 | ID=cds.MS.gene038446.t1;Parent=MS.gene038446.t1 |
| chr8.4 | exon | 35791145 | 35791246 | 35791145 | ID=MS.gene038446.t1.exon3;Parent=MS.gene038446.t1 |
| chr8.4 | CDS | 35791145 | 35791246 | 35791145 | ID=cds.MS.gene038446.t1;Parent=MS.gene038446.t1 |
| Gene Sequence |
| Protein sequence |
