Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038450.t1 | XP_003628788.1 | 95.5 | 376 | 15 | 2 | 1 | 374 | 1 | 376 | 7.70E-159 | 570.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038450.t1 | Q9LQM3 | 68.6 | 385 | 94 | 9 | 7 | 374 | 10 | 384 | 8.7e-95 | 348.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038450.t1 | G7LH15 | 95.5 | 376 | 15 | 2 | 1 | 374 | 1 | 376 | 5.5e-159 | 570.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene038450.t1 | TF | C3H |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038450.t1 | MTR_8g066730 | 98.670 | 376 | 3 | 2 | 1 | 374 | 1 | 376 | 0.0 | 750 |
| MS.gene038450.t1 | MTR_8g066730 | 97.232 | 289 | 6 | 2 | 1 | 287 | 1 | 289 | 0.0 | 564 |
| MS.gene038450.t1 | MTR_4g113860 | 30.612 | 294 | 141 | 9 | 80 | 372 | 76 | 307 | 3.81e-34 | 129 |
| MS.gene038450.t1 | MTR_4g113970 | 36.683 | 199 | 89 | 5 | 89 | 280 | 77 | 245 | 7.88e-34 | 126 |
| MS.gene038450.t1 | MTR_4g113940 | 27.246 | 345 | 154 | 7 | 35 | 372 | 16 | 270 | 1.74e-30 | 117 |
| MS.gene038450.t1 | MTR_3g050390 | 25.949 | 316 | 140 | 8 | 60 | 372 | 4 | 228 | 5.26e-26 | 105 |
| MS.gene038450.t1 | MTR_4g113890 | 36.975 | 119 | 46 | 2 | 80 | 198 | 56 | 145 | 1.20e-16 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene038450.t1 | AT1G32360 | 60.560 | 393 | 122 | 12 | 3 | 374 | 4 | 384 | 3.97e-132 | 383 |
| MS.gene038450.t1 | AT3G19360 | 36.755 | 302 | 154 | 10 | 84 | 373 | 98 | 374 | 6.90e-46 | 162 |
| MS.gene038450.t1 | AT3G19360 | 36.755 | 302 | 154 | 10 | 84 | 373 | 98 | 374 | 6.90e-46 | 162 |
| MS.gene038450.t1 | AT2G35430 | 41.739 | 230 | 63 | 9 | 167 | 374 | 72 | 252 | 1.79e-41 | 146 |
| MS.gene038450.t1 | AT2G35430 | 37.427 | 171 | 69 | 7 | 26 | 191 | 31 | 168 | 4.08e-20 | 89.0 |
Find 126 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTGGTGGAGGAGGAGGAGG+TGG | 0.204425 | 8.4:-35825003 | MS.gene038450:CDS |
| GGTGGAGGTGGTGGAGGAGG+AGG | 0.223597 | 8.4:-35825009 | MS.gene038450:CDS |
| GGAGGTGGTGGAGGAGGAGG+AGG | 0.235103 | 8.4:-35825006 | MS.gene038450:CDS |
| TATGAATAATAGGTCTTATA+AGG | 0.235365 | 8.4:-35825163 | MS.gene038450:CDS |
| ACTGAAGAAGGTTGTCCTTA+TGG | 0.260800 | 8.4:-35825117 | MS.gene038450:CDS |
| GGTGGTGGAGGTGGTGGAGG+AGG | 0.265178 | 8.4:-35825012 | MS.gene038450:CDS |
| TATGGTGGTGGTGGAGGTGG+TGG | 0.279719 | 8.4:-35825018 | MS.gene038450:CDS |
| CACATTATCAGCATGAGTTT+TGG | 0.299688 | 8.4:+35823459 | None:intergenic |
| GGTGGTGGTGGAGGTGGTGG+AGG | 0.301864 | 8.4:-35825015 | MS.gene038450:CDS |
| CAATTCGAAGGCTTCAAATT+AGG | 0.308899 | 8.4:+35824904 | None:intergenic |
| AAATTACAGTTCGTTATATA+AGG | 0.316371 | 8.4:+35825333 | None:intergenic |
| CAGATATGGAGGTGGGCTTA+TGG | 0.316746 | 8.4:-35823542 | MS.gene038450:CDS |
| GGTTCAGATGTTTATCATCT+TGG | 0.329111 | 8.4:-35823415 | MS.gene038450:CDS |
| AGTTTAGGTCCCGGTGGTTA+TGG | 0.330311 | 8.4:-35825036 | MS.gene038450:CDS |
| GATAAAATCAGTAGGATATA+TGG | 0.337131 | 8.4:-35823319 | MS.gene038450:CDS |
| GAAAGTGTGGCGATTAGTTT+AGG | 0.346387 | 8.4:-35825051 | MS.gene038450:CDS |
| TTGGGGAGAGTATGAATAAT+AGG | 0.346414 | 8.4:-35825173 | MS.gene038450:CDS |
| GGTTATGGTGGTGGTGGAGG+TGG | 0.349998 | 8.4:-35825021 | MS.gene038450:CDS |
| CTAATTTGAAGCCTTCGAAT+TGG | 0.351114 | 8.4:-35824903 | MS.gene038450:CDS |
| TGCGTCGGCCGCCGGAGAAT+TGG | 0.373994 | 8.4:-35825290 | MS.gene038450:CDS |
| TTCTGATGAGCTCTCTGTCC+TGG | 0.376334 | 8.4:+35823355 | None:intergenic |
| CAGCTGGTGCGGCCGCGGTT+GGG | 0.377275 | 8.4:-35824933 | MS.gene038450:CDS |
| GCAGCTGGTGCGGCCGCGGT+TGG | 0.388240 | 8.4:-35824934 | MS.gene038450:CDS |
| CTGTAGCACCATGAGCAAAA+TGG | 0.399102 | 8.4:+35824821 | None:intergenic |
| TGTAATAAGTGGGAGATGAC+TGG | 0.409320 | 8.4:-35824868 | MS.gene038450:CDS |
| GGTGCGGCCGCGGTTGGGAA+TGG | 0.416021 | 8.4:-35824928 | MS.gene038450:CDS |
| GGTGGTGGTGGCAGTGGAGG+AGG | 0.418521 | 8.4:-35825432 | MS.gene038450:CDS |
| ATGACTGGGTATTGTCCCTT+TGG | 0.419828 | 8.4:-35824853 | MS.gene038450:CDS |
| ATGAATAATAGGTCTTATAA+GGG | 0.419939 | 8.4:-35825162 | MS.gene038450:CDS |
| GGAGGAGGAGGTGGGAGTGT+TGG | 0.423488 | 8.4:-35824994 | MS.gene038450:CDS |
| CGGAAGATGAGTATCGTTAC+TGG | 0.423843 | 8.4:-35825551 | MS.gene038450:CDS |
| GGTGTTGTTGTTGTTGCAGC+TGG | 0.426984 | 8.4:-35824949 | MS.gene038450:CDS |
| ACTGCAGAATTACACAGATA+TGG | 0.430785 | 8.4:-35823556 | MS.gene038450:intron |
| GTTGGTAGTGTTGGTGGTAG+TGG | 0.432301 | 8.4:-35824976 | MS.gene038450:CDS |
| CAAGATGGTGGTGGTGGCAG+TGG | 0.435000 | 8.4:-35825438 | MS.gene038450:CDS |
| GCGGCGGAGCCGCCGATAGC+TGG | 0.440541 | 8.4:-35825599 | MS.gene038450:CDS |
| AAACTAGGATTTGTAATAAG+TGG | 0.442008 | 8.4:-35824879 | MS.gene038450:CDS |
| GGTGGGAGTGTTGGTAGTGT+TGG | 0.443949 | 8.4:-35824985 | MS.gene038450:CDS |
| GGTCAACCGACCAAGCTGAC+TGG | 0.444227 | 8.4:-35825578 | MS.gene038450:CDS |
| TTGCTTCTCGATTTCTTACT+CGG | 0.445185 | 8.4:+35825465 | None:intergenic |
| AGCCTTCGAATTGGAAAACT+AGG | 0.448493 | 8.4:-35824894 | MS.gene038450:CDS |
| GCTATCGGCGGCTCCGCCGC+CGG | 0.448730 | 8.4:+35825602 | None:intergenic |
| GGAGTGTGATTGAGCAGCCT+AGG | 0.450759 | 8.4:-35825236 | MS.gene038450:CDS |
| GATGGTGGTGGTGGCAGTGG+AGG | 0.455113 | 8.4:-35825435 | MS.gene038450:CDS |
| TACTGGAACGGAAACGATGC+TGG | 0.458682 | 8.4:-35825534 | MS.gene038450:CDS |
| GGGAGTGTTGGTAGTGTTGG+TGG | 0.465014 | 8.4:-35824982 | MS.gene038450:CDS |
| GTGGTGGAGGAGGAGGAGGT+GGG | 0.465072 | 8.4:-35825002 | MS.gene038450:CDS |
| GGTGGTTATGGTGGTGGTGG+AGG | 0.469378 | 8.4:-35825024 | MS.gene038450:CDS |
| CCGTCTTCAAATTCGCGTGC+AGG | 0.475752 | 8.4:-35825498 | MS.gene038450:CDS |
| CCCGGTGGTTATGGTGGTGG+TGG | 0.477029 | 8.4:-35825027 | MS.gene038450:CDS |
| GGAGGAGCTGCGTCGGCCGC+CGG | 0.477423 | 8.4:-35825298 | MS.gene038450:CDS |
| TGTTGCGTCTGACACAAAAC+AGG | 0.484755 | 8.4:-35823491 | MS.gene038450:CDS |
| AGTTTCAGATACCGACGGTT+GGG | 0.486443 | 8.4:-35825209 | MS.gene038450:CDS |
| CTTCCGTCGCCCAGTCAGCT+TGG | 0.490823 | 8.4:+35825568 | None:intergenic |
| TGTTGCAGCTGGTGCGGCCG+CGG | 0.493113 | 8.4:-35824938 | MS.gene038450:CDS |
| GTCAACCGACCAAGCTGACT+GGG | 0.495786 | 8.4:-35825577 | MS.gene038450:CDS |
| AACTAGGATTTGTAATAAGT+GGG | 0.496877 | 8.4:-35824878 | MS.gene038450:CDS |
| GTTGCATCAAATCCTCCTAC+TGG | 0.500963 | 8.4:-35823436 | MS.gene038450:CDS |
| AGTGTTGGTGGTAGTGGTAG+TGG | 0.513157 | 8.4:-35824970 | MS.gene038450:CDS |
| ATCGGCGGCTCCGCCGCCGG+TGG | 0.513840 | 8.4:+35825605 | None:intergenic |
| TCGAATCGCGCGAAAGCGAT+AGG | 0.514745 | 8.4:-35825408 | MS.gene038450:CDS |
| CGTCGCCCAGTCAGCTTGGT+CGG | 0.519038 | 8.4:+35825572 | None:intergenic |
| AAAGTACAACTATCTCCATA+AGG | 0.520248 | 8.4:+35825102 | None:intergenic |
| CAAATCATCACCACCGGCGG+CGG | 0.520822 | 8.4:-35825615 | MS.gene038450:CDS |
| TCAGTAGGATATATGGCGAT+TGG | 0.521816 | 8.4:-35823312 | MS.gene038450:CDS |
| ACAATCTCCTGCCAATTCTC+CGG | 0.526020 | 8.4:+35825279 | None:intergenic |
| CAATGGAAGGTCTTTGTGAA+GGG | 0.529629 | 8.4:+35823389 | None:intergenic |
| GGAGAATTGGCAGGAGATTG+TGG | 0.530968 | 8.4:-35825277 | MS.gene038450:CDS |
| TCCACCACCACCATAACCAC+CGG | 0.534604 | 8.4:+35825026 | None:intergenic |
| TCGGCCGCCGGAGAATTGGC+AGG | 0.541968 | 8.4:-35825286 | MS.gene038450:CDS |
| GGTCCCGGTGGTTATGGTGG+TGG | 0.546890 | 8.4:-35825030 | MS.gene038450:CDS |
| AAAATGGCATTTGTTACCAA+AGG | 0.546912 | 8.4:+35824837 | None:intergenic |
| GACAGAGAGCTCATCAGAAG+TGG | 0.547469 | 8.4:-35823351 | MS.gene038450:CDS |
| GTGGCGATTAGTTTAGGTCC+CGG | 0.552008 | 8.4:-35825045 | MS.gene038450:CDS |
| GGTATCTGAAACTCCTCCCT+AGG | 0.552310 | 8.4:+35825219 | None:intergenic |
| GGCCTCTGACTCACAATGGA+AGG | 0.553370 | 8.4:+35823376 | None:intergenic |
| TCGAGAAGCAATTCGCAAGA+TGG | 0.554276 | 8.4:-35825453 | MS.gene038450:CDS |
| GAGTGTGATTGAGCAGCCTA+GGG | 0.557000 | 8.4:-35825235 | MS.gene038450:CDS |
| AAATGGCATTTGTTACCAAA+GGG | 0.557541 | 8.4:+35824838 | None:intergenic |
| GTAATAAGTGGGAGATGACT+GGG | 0.557999 | 8.4:-35824867 | MS.gene038450:CDS |
| AATTCGCAAGATGGTGGTGG+TGG | 0.565492 | 8.4:-35825444 | MS.gene038450:CDS |
| TCCATTGTGAGTCAGAGGCC+AGG | 0.568730 | 8.4:-35823373 | MS.gene038450:CDS |
| CTATGCTGTAAGTTTCGTGT+GGG | 0.569773 | 8.4:-35825363 | MS.gene038450:CDS |
| GACCTTCCATTGTGAGTCAG+AGG | 0.580448 | 8.4:-35823378 | MS.gene038450:CDS |
| TATGGAGGTGGGCTTATGGA+AGG | 0.583879 | 8.4:-35823538 | MS.gene038450:CDS |
| CGAATCGCGCGAAAGCGATA+GGG | 0.588275 | 8.4:-35825407 | MS.gene038450:CDS |
| CCACCACCACCATAACCACC+GGG | 0.590124 | 8.4:+35825027 | None:intergenic |
| AGCAATTCGCAAGATGGTGG+TGG | 0.591086 | 8.4:-35825447 | MS.gene038450:CDS |
| GAATTACACAGATATGGAGG+TGG | 0.593880 | 8.4:-35823550 | MS.gene038450:CDS |
| ACAATGGAAGGTCTTTGTGA+AGG | 0.593936 | 8.4:+35823388 | None:intergenic |
| TCCTGGCCTCTGACTCACAA+TGG | 0.594508 | 8.4:+35823372 | None:intergenic |
| TGTTGTTGTTGCAGCTGGTG+CGG | 0.594830 | 8.4:-35824944 | MS.gene038450:CDS |
| CGACCAAGCTGACTGGGCGA+CGG | 0.595148 | 8.4:-35825571 | MS.gene038450:CDS |
| TTGGTCGGTTGACCAGCTAT+CGG | 0.595738 | 8.4:+35825587 | None:intergenic |
| GATGAGTATCGTTACTGGAA+CGG | 0.598603 | 8.4:-35825546 | MS.gene038450:CDS |
| CAAAACTCATGCTGATAATG+TGG | 0.598802 | 8.4:-35823458 | MS.gene038450:CDS |
| GTCGTTCAAATCATCACCAC+CGG | 0.600321 | 8.4:-35825621 | MS.gene038450:CDS |
| AGAGCTCATCAGAAGTGGAA+AGG | 0.606297 | 8.4:-35823346 | MS.gene038450:CDS |
| TTAGGTCCCGGTGGTTATGG+TGG | 0.607828 | 8.4:-35825033 | MS.gene038450:CDS |
| GAGTTTCAGATACCGACGGT+TGG | 0.612303 | 8.4:-35825210 | MS.gene038450:CDS |
| AAAGTACTCGACCCAACCGT+CGG | 0.614579 | 8.4:+35825198 | None:intergenic |
| ACTATGCTGTAAGTTTCGTG+TGG | 0.615988 | 8.4:-35825364 | MS.gene038450:CDS |
| ATCGAAGAATCGTGAAAGTG+TGG | 0.618402 | 8.4:-35825064 | MS.gene038450:CDS |
| AAGGTCCCGATAAAATCAGT+AGG | 0.622761 | 8.4:-35823327 | MS.gene038450:CDS |
| GGAGGAGTTTCAGATACCGA+CGG | 0.623970 | 8.4:-35825214 | MS.gene038450:CDS |
| TGTGATTGAGCAGCCTAGGG+AGG | 0.629299 | 8.4:-35825232 | MS.gene038450:CDS |
| ATAGTGTGGAGGAGCTGCGT+CGG | 0.631733 | 8.4:-35825305 | MS.gene038450:CDS |
| TAAACATCTGAACCAGTAGG+AGG | 0.634383 | 8.4:+35823424 | None:intergenic |
| AATTACACAGATATGGAGGT+GGG | 0.635355 | 8.4:-35823549 | MS.gene038450:CDS |
| AGAAGCAATTCGCAAGATGG+TGG | 0.638549 | 8.4:-35825450 | MS.gene038450:CDS |
| TGATAAACATCTGAACCAGT+AGG | 0.638955 | 8.4:+35823421 | None:intergenic |
| TGAATAATAGGTCTTATAAG+GGG | 0.644881 | 8.4:-35825161 | MS.gene038450:CDS |
| CCTGCACGCGAATTTGAAGA+CGG | 0.647659 | 8.4:+35825498 | None:intergenic |
| TGGCTGCTCATGAAGAAGAG+AGG | 0.650335 | 8.4:-35825257 | MS.gene038450:CDS |
| ACAATGGATTACAACAGAGA+CGG | 0.651622 | 8.4:-35825648 | MS.gene038450:CDS |
| ATGGAAGGAGAAAGCAGAGA+CGG | 0.651866 | 8.4:-35823523 | MS.gene038450:CDS |
| ATCTCCTGCCAATTCTCCGG+CGG | 0.654680 | 8.4:+35825282 | None:intergenic |
| GTTCAAATCATCACCACCGG+CGG | 0.671677 | 8.4:-35825618 | MS.gene038450:CDS |
| GTCGGTTGACCAGCTATCGG+CGG | 0.673668 | 8.4:+35825590 | None:intergenic |
| GCAGAATTACACAGATATGG+AGG | 0.676863 | 8.4:-35823553 | MS.gene038450:intron |
| TGGAACGGAAACGATGCTGG+TGG | 0.699268 | 8.4:-35825531 | MS.gene038450:CDS |
| ATTAGGTCCATTCCCAACCG+CGG | 0.701157 | 8.4:+35824921 | None:intergenic |
| CTTCTCGATTTCTTACTCGG+CGG | 0.702870 | 8.4:+35825468 | None:intergenic |
| GCGATTAGTTTAGGTCCCGG+TGG | 0.706931 | 8.4:-35825042 | MS.gene038450:CDS |
| TATGCTGTAAGTTTCGTGTG+GGG | 0.708514 | 8.4:-35825362 | MS.gene038450:CDS |
| GTTGCGTCTGACACAAAACA+GGG | 0.785414 | 8.4:-35823490 | MS.gene038450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTAAAGATTTTAATTTTA+TGG | - | chr8.4:35824182-35824201 | MS.gene038450:intron | 10.0% |
| !!! | TTTTAATTTTATGGTAATTG+AGG | - | chr8.4:35824191-35824210 | MS.gene038450:intron | 15.0% |
| !! | AAATTACAGTTCGTTATATA+AGG | + | chr8.4:35823609-35823628 | None:intergenic | 20.0% |
| !! | ACATAACAAAATCATCAAAA+TGG | + | chr8.4:35824156-35824175 | None:intergenic | 20.0% |
| !!! | AAGAAATTTTATACTGAAGA+AGG | - | chr8.4:35823810-35823829 | MS.gene038450:intron | 20.0% |
| !!! | ATATATCCTACTGATTTTAT+CGG | + | chr8.4:35825621-35825640 | None:intergenic | 20.0% |
| !!! | ATGAATAATAGGTCTTATAA+GGG | - | chr8.4:35823777-35823796 | MS.gene038450:intron | 20.0% |
| !!! | GGTTTTTTCTTCATTTAATA+TGG | - | chr8.4:35824364-35824383 | MS.gene038450:intron | 20.0% |
| !!! | TATGAATAATAGGTCTTATA+AGG | - | chr8.4:35823776-35823795 | MS.gene038450:intron | 20.0% |
| ! | AAAATGTATATGTGCATGTT+TGG | + | chr8.4:35825247-35825266 | None:intergenic | 25.0% |
| ! | AAACTAGGATTTGTAATAAG+TGG | - | chr8.4:35824060-35824079 | MS.gene038450:intron | 25.0% |
| ! | AACTAGGATTTGTAATAAGT+GGG | - | chr8.4:35824061-35824080 | MS.gene038450:intron | 25.0% |
| ! | AAGAAAAAACCAATCTTGTA+TGG | + | chr8.4:35824355-35824374 | None:intergenic | 25.0% |
| ! | ATGAAAAGTAATCGCAAAAA+AGG | + | chr8.4:35824740-35824759 | None:intergenic | 25.0% |
| ! | GATAAAATCAGTAGGATATA+TGG | - | chr8.4:35825620-35825639 | MS.gene038450:CDS | 25.0% |
| !! | ATTTGAATTTGAAGCATACA+AGG | + | chr8.4:35824766-35824785 | None:intergenic | 25.0% |
| !! | CTTTTTAATCCATACAAGAT+TGG | - | chr8.4:35824343-35824362 | MS.gene038450:intron | 25.0% |
| !! | GTTATAAATAGTTTGTGTTG+TGG | - | chr8.4:35824263-35824282 | MS.gene038450:intron | 25.0% |
| !! | TACCATTTGGATACAATTTT+GGG | - | chr8.4:35824305-35824324 | MS.gene038450:intron | 25.0% |
| !! | TGAATAATAGGTCTTATAAG+GGG | - | chr8.4:35823778-35823797 | MS.gene038450:intron | 25.0% |
| !! | TTACCATTTGGATACAATTT+TGG | - | chr8.4:35824304-35824323 | MS.gene038450:intron | 25.0% |
| !! | TTTTCATTGTGCAAAACATA+AGG | + | chr8.4:35824632-35824651 | None:intergenic | 25.0% |
| !! | TTTTCTTAATCAGAAAGTGA+AGG | + | chr8.4:35824796-35824815 | None:intergenic | 25.0% |
| !! | TTTTGATATGTATGTGAATG+TGG | - | chr8.4:35824487-35824506 | MS.gene038450:intron | 25.0% |
| !!! | ATAGAAAGTGCTATTAGAAT+TGG | - | chr8.4:35824237-35824256 | MS.gene038450:intron | 25.0% |
| !!! | GATGATTTTGTTATGTGAAT+TGG | - | chr8.4:35824160-35824179 | MS.gene038450:intron | 25.0% |
| !!! | TATATCCTACTGATTTTATC+GGG | + | chr8.4:35825620-35825639 | None:intergenic | 25.0% |
| AAACATGCACATAATGAACA+AGG | + | chr8.4:35825101-35825120 | None:intergenic | 30.0% | |
| AAAGTACAACTATCTCCATA+AGG | + | chr8.4:35823840-35823859 | None:intergenic | 30.0% | |
| ACCAAAACAAAATTGACACT+AGG | + | chr8.4:35824444-35824463 | None:intergenic | 30.0% | |
| ACTGTAAACCAAAAAACACT+TGG | + | chr8.4:35824713-35824732 | None:intergenic | 30.0% | |
| ACTTTCATTGCTTTGATGTT+TGG | - | chr8.4:35825075-35825094 | MS.gene038450:CDS | 30.0% | |
| ATTGCATAGATTACTCAAGT+CGG | + | chr8.4:35824548-35824567 | None:intergenic | 30.0% | |
| CCAAAACAAAATTGACACTA+GGG | + | chr8.4:35824443-35824462 | None:intergenic | 30.0% | |
| GAAAAGAATAGTTTCATGAG+TGG | - | chr8.4:35824836-35824855 | MS.gene038450:CDS | 30.0% | |
| GGCTTAAATTGATTATCTGT+CGG | - | chr8.4:35825306-35825325 | MS.gene038450:CDS | 30.0% | |
| TTCCCAAAATTGTATCCAAA+TGG | + | chr8.4:35824310-35824329 | None:intergenic | 30.0% | |
| TTGTTCATTATGTGCATGTT+TGG | - | chr8.4:35825100-35825119 | MS.gene038450:CDS | 30.0% | |
| ! | AAAATGGCATTTGTTACCAA+AGG | + | chr8.4:35824105-35824124 | None:intergenic | 30.0% |
| ! | AAATGGCATTTGTTACCAAA+GGG | + | chr8.4:35824104-35824123 | None:intergenic | 30.0% |
| ! | TTGATACACGAGTGTTTTAT+TGG | - | chr8.4:35825285-35825304 | MS.gene038450:CDS | 30.0% |
| !!! | GCAAATTTCCAAGTGTTTTT+TGG | - | chr8.4:35824702-35824721 | MS.gene038450:intron | 30.0% |
| !!! | TTTTGTTTTGGTTGATGCTA+AGG | - | chr8.4:35824452-35824471 | MS.gene038450:intron | 30.0% |
| AAGAATAGTTTCATGAGTGG+TGG | - | chr8.4:35824839-35824858 | MS.gene038450:CDS | 35.0% | |
| AATTACACAGATATGGAGGT+GGG | - | chr8.4:35825390-35825409 | MS.gene038450:CDS | 35.0% | |
| ACTGCAGAATTACACAGATA+TGG | - | chr8.4:35825383-35825402 | MS.gene038450:CDS | 35.0% | |
| AGAATAGTTTCATGAGTGGT+GGG | - | chr8.4:35824840-35824859 | MS.gene038450:CDS | 35.0% | |
| CAATTCGAAGGCTTCAAATT+AGG | + | chr8.4:35824038-35824057 | None:intergenic | 35.0% | |
| CATTGTGCAAAACATAAGGA+AGG | + | chr8.4:35824628-35824647 | None:intergenic | 35.0% | |
| GGTTCAGATGTTTATCATCT+TGG | - | chr8.4:35825524-35825543 | MS.gene038450:CDS | 35.0% | |
| TATGTGCATGTTTGGATTGA+CGG | - | chr8.4:35825108-35825127 | MS.gene038450:CDS | 35.0% | |
| TGATAAACATCTGAACCAGT+AGG | + | chr8.4:35825521-35825540 | None:intergenic | 35.0% | |
| TGTACTTAATCGCATATTCG+TGG | + | chr8.4:35824964-35824983 | None:intergenic | 35.0% | |
| TGTTGTCAAATAGCGTCTAT+AGG | - | chr8.4:35824987-35825006 | MS.gene038450:CDS | 35.0% | |
| TTGCTTCTCGATTTCTTACT+CGG | + | chr8.4:35823477-35823496 | None:intergenic | 35.0% | |
| ! | CAAAACTCATGCTGATAATG+TGG | - | chr8.4:35825481-35825500 | MS.gene038450:CDS | 35.0% |
| ! | CACATTATCAGCATGAGTTT+TGG | + | chr8.4:35825483-35825502 | None:intergenic | 35.0% |
| ! | CTAATTTGAAGCCTTCGAAT+TGG | - | chr8.4:35824036-35824055 | MS.gene038450:intron | 35.0% |
| ! | CTGTAATTTTGCTCATAGTG+TGG | - | chr8.4:35823620-35823639 | MS.gene038450:intron | 35.0% |
| ! | TAATTTTGCTCATAGTGTGG+AGG | - | chr8.4:35823623-35823642 | MS.gene038450:intron | 35.0% |
| ! | TTGGGGAGAGTATGAATAAT+AGG | - | chr8.4:35823766-35823785 | MS.gene038450:intron | 35.0% |
| !! | ATCCTAGTTTTCCAATTCGA+AGG | + | chr8.4:35824050-35824069 | None:intergenic | 35.0% |
| !! | CCCTAGTGTCAATTTTGTTT+TGG | - | chr8.4:35824440-35824459 | MS.gene038450:intron | 35.0% |
| !!! | AACAAATGCCATTTTGCTCA+TGG | - | chr8.4:35824110-35824129 | MS.gene038450:intron | 35.0% |
| !!! | TTATCAGCATGAGTTTTGGA+AGG | + | chr8.4:35825479-35825498 | None:intergenic | 35.0% |
| AAGGTCCCGATAAAATCAGT+AGG | - | chr8.4:35825612-35825631 | MS.gene038450:CDS | 40.0% | |
| ACAATGGAAGGTCTTTGTGA+AGG | + | chr8.4:35825554-35825573 | None:intergenic | 40.0% | |
| ACTATGCTGTAAGTTTCGTG+TGG | - | chr8.4:35823575-35823594 | MS.gene038450:intron | 40.0% | |
| ACTGAAGAAGGTTGTCCTTA+TGG | - | chr8.4:35823822-35823841 | MS.gene038450:intron | 40.0% | |
| AGACTGGCATGACATAATCA+TGG | + | chr8.4:35825214-35825233 | None:intergenic | 40.0% | |
| AGCCTTCGAATTGGAAAACT+AGG | - | chr8.4:35824045-35824064 | MS.gene038450:intron | 40.0% | |
| ATCGAAGAATCGTGAAAGTG+TGG | - | chr8.4:35823875-35823894 | MS.gene038450:intron | 40.0% | |
| CAATGGAAGGTCTTTGTGAA+GGG | + | chr8.4:35825553-35825572 | None:intergenic | 40.0% | |
| CTATGCTGTAAGTTTCGTGT+GGG | - | chr8.4:35823576-35823595 | MS.gene038450:intron | 40.0% | |
| GAATTACACAGATATGGAGG+TGG | - | chr8.4:35825389-35825408 | MS.gene038450:CDS | 40.0% | |
| GCAGAATTACACAGATATGG+AGG | - | chr8.4:35825386-35825405 | MS.gene038450:CDS | 40.0% | |
| GTAATAAGTGGGAGATGACT+GGG | - | chr8.4:35824072-35824091 | MS.gene038450:intron | 40.0% | |
| TAAACATCTGAACCAGTAGG+AGG | + | chr8.4:35825518-35825537 | None:intergenic | 40.0% | |
| TATGCTGTAAGTTTCGTGTG+GGG | - | chr8.4:35823577-35823596 | MS.gene038450:intron | 40.0% | |
| TATGTGCATGTTTGGATCGA+CGG | + | chr8.4:35825239-35825258 | None:intergenic | 40.0% | |
| TCAGTAGGATATATGGCGAT+TGG | - | chr8.4:35825627-35825646 | MS.gene038450:CDS | 40.0% | |
| TGTAATAAGTGGGAGATGAC+TGG | - | chr8.4:35824071-35824090 | MS.gene038450:intron | 40.0% | |
| ! | CTCTTTTTGTGATCCGCAAT+CGG | - | chr8.4:35825046-35825065 | MS.gene038450:CDS | 40.0% |
| ! | GATGAGTATCGTTACTGGAA+CGG | - | chr8.4:35823393-35823412 | MS.gene038450:CDS | 40.0% |
| ! | GGCAGTGTTTTCTTACCATT+TGG | - | chr8.4:35824292-35824311 | MS.gene038450:intron | 40.0% |
| ! | TAGTTTGTGTTGTGGAGTTG+TGG | - | chr8.4:35824271-35824290 | MS.gene038450:intron | 40.0% |
| ! | TGAAAGTATGTTGCCGATTG+CGG | + | chr8.4:35825062-35825081 | None:intergenic | 40.0% |
| ! | TTGGGTCGAGTACTTTTGTT+GGG | - | chr8.4:35823748-35823767 | MS.gene038450:intron | 40.0% |
| !! | GAAAGTGTGGCGATTAGTTT+AGG | - | chr8.4:35823888-35823907 | MS.gene038450:intron | 40.0% |
| ACAATCTCCTGCCAATTCTC+CGG | + | chr8.4:35823663-35823682 | None:intergenic | 45.0% | |
| AGAAGCAATTCGCAAGATGG+TGG | - | chr8.4:35823489-35823508 | MS.gene038450:CDS | 45.0% | |
| AGAGCTCATCAGAAGTGGAA+AGG | - | chr8.4:35825593-35825612 | MS.gene038450:CDS | 45.0% | |
| AGTTTCAGATACCGACGGTT+GGG | - | chr8.4:35823730-35823749 | MS.gene038450:intron | 45.0% | |
| ATGGAAGGAGAAAGCAGAGA+CGG | - | chr8.4:35825416-35825435 | MS.gene038450:CDS | 45.0% | |
| ATTGACACTAGGGACAATGC+AGG | + | chr8.4:35824433-35824452 | None:intergenic | 45.0% | |
| CTGTAGCACCATGAGCAAAA+TGG | + | chr8.4:35824121-35824140 | None:intergenic | 45.0% | |
| CTTCTCGATTTCTTACTCGG+CGG | + | chr8.4:35823474-35823493 | None:intergenic | 45.0% | |
| GTCGTTCAAATCATCACCAC+CGG | - | chr8.4:35823318-35823337 | MS.gene038450:CDS | 45.0% | |
| GTTGCATCAAATCCTCCTAC+TGG | - | chr8.4:35825503-35825522 | MS.gene038450:CDS | 45.0% | |
| GTTGCGTCTGACACAAAACA+GGG | - | chr8.4:35825449-35825468 | MS.gene038450:CDS | 45.0% | |
| TAGGATAGCACAGTACGTAG+TGG | - | chr8.4:35825006-35825025 | MS.gene038450:CDS | 45.0% | |
| TCGAGAAGCAATTCGCAAGA+TGG | - | chr8.4:35823486-35823505 | MS.gene038450:CDS | 45.0% | |
| TGTTGCGTCTGACACAAAAC+AGG | - | chr8.4:35825448-35825467 | MS.gene038450:CDS | 45.0% | |
| TTGACACTAGGGACAATGCA+GGG | + | chr8.4:35824432-35824451 | None:intergenic | 45.0% | |
| ! | ATGACTGGGTATTGTCCCTT+TGG | - | chr8.4:35824086-35824105 | MS.gene038450:intron | 45.0% |
| ! | CGGAAGATGAGTATCGTTAC+TGG | - | chr8.4:35823388-35823407 | MS.gene038450:CDS | 45.0% |
| ! | GGTGGGTTCAGAATGAAAGA+TGG | - | chr8.4:35824857-35824876 | MS.gene038450:CDS | 45.0% |
| ! | GTTGGGTCGAGTACTTTTGT+TGG | - | chr8.4:35823747-35823766 | MS.gene038450:intron | 45.0% |
| ! | TGGGTCGAGTACTTTTGTTG+GGG | - | chr8.4:35823749-35823768 | MS.gene038450:intron | 45.0% |
| !!! | CATTTTGCTCATGGTGCTAC+AGG | - | chr8.4:35824119-35824138 | MS.gene038450:intron | 45.0% |
| AGTTTAGGTCCCGGTGGTTA+TGG | - | chr8.4:35823903-35823922 | MS.gene038450:intron | 50.0% | |
| ATTAGGTCCATTCCCAACCG+CGG | + | chr8.4:35824021-35824040 | None:intergenic | 50.0% | |
| CCTGCACGCGAATTTGAAGA+CGG | + | chr8.4:35823444-35823463 | None:intergenic | 50.0% | |
| GACAGAGAGCTCATCAGAAG+TGG | - | chr8.4:35825588-35825607 | MS.gene038450:CDS | 50.0% | |
| GACCTTCCATTGTGAGTCAG+AGG | - | chr8.4:35825561-35825580 | MS.gene038450:CDS | 50.0% | |
| GAGTGTGATTGAGCAGCCTA+GGG | - | chr8.4:35823704-35823723 | MS.gene038450:intron | 50.0% | |
| GAGTTTCAGATACCGACGGT+TGG | - | chr8.4:35823729-35823748 | MS.gene038450:intron | 50.0% | |
| GGAGAATTGGCAGGAGATTG+TGG | - | chr8.4:35823662-35823681 | MS.gene038450:intron | 50.0% | |
| GGAGGAGTTTCAGATACCGA+CGG | - | chr8.4:35823725-35823744 | MS.gene038450:intron | 50.0% | |
| GTTCAAATCATCACCACCGG+CGG | - | chr8.4:35823321-35823340 | MS.gene038450:CDS | 50.0% | |
| TACTGGAACGGAAACGATGC+TGG | - | chr8.4:35823405-35823424 | MS.gene038450:CDS | 50.0% | |
| TGGCTGCTCATGAAGAAGAG+AGG | - | chr8.4:35823682-35823701 | MS.gene038450:intron | 50.0% | |
| TTCTGATGAGCTCTCTGTCC+TGG | + | chr8.4:35825587-35825606 | None:intergenic | 50.0% | |
| TTGGTCGGTTGACCAGCTAT+CGG | + | chr8.4:35823355-35823374 | None:intergenic | 50.0% | |
| ! | AAAGTACTCGACCCAACCGT+CGG | + | chr8.4:35823744-35823763 | None:intergenic | 50.0% |
| ! | AGCAATTCGCAAGATGGTGG+TGG | - | chr8.4:35823492-35823511 | MS.gene038450:CDS | 50.0% |
| ! | CAGATATGGAGGTGGGCTTA+TGG | - | chr8.4:35825397-35825416 | MS.gene038450:CDS | 50.0% |
| ! | GGTATCTGAAACTCCTCCCT+AGG | + | chr8.4:35823723-35823742 | None:intergenic | 50.0% |
| ! | TATGGAGGTGGGCTTATGGA+AGG | - | chr8.4:35825401-35825420 | MS.gene038450:CDS | 50.0% |
| ! | TGTTGTTGTTGCAGCTGGTG+CGG | - | chr8.4:35823995-35824014 | MS.gene038450:intron | 50.0% |
| !! | AATTCGCAAGATGGTGGTGG+TGG | - | chr8.4:35823495-35823514 | MS.gene038450:CDS | 50.0% |
| !! | AGTGTTGGTGGTAGTGGTAG+TGG | - | chr8.4:35823969-35823988 | MS.gene038450:intron | 50.0% |
| !! | GGTGTTGTTGTTGTTGCAGC+TGG | - | chr8.4:35823990-35824009 | MS.gene038450:intron | 50.0% |
| !! | GTGGCGATTAGTTTAGGTCC+CGG | - | chr8.4:35823894-35823913 | MS.gene038450:intron | 50.0% |
| !! | GTTGGTAGTGTTGGTGGTAG+TGG | - | chr8.4:35823963-35823982 | MS.gene038450:intron | 50.0% |
| AGTGCTACAGCGCTATCGTG+TGG | - | chr8.4:35824912-35824931 | MS.gene038450:CDS | 55.0% | |
| ATAGTGTGGAGGAGCTGCGT+CGG | - | chr8.4:35823634-35823653 | MS.gene038450:intron | 55.0% | |
| ATCTCCTGCCAATTCTCCGG+CGG | + | chr8.4:35823660-35823679 | None:intergenic | 55.0% | |
| CCGTCTTCAAATTCGCGTGC+AGG | - | chr8.4:35823441-35823460 | MS.gene038450:CDS | 55.0% | |
| CGAATCGCGCGAAAGCGATA+GGG | - | chr8.4:35823532-35823551 | MS.gene038450:CDS | 55.0% | |
| CGAGTTTAGCGAAATCGCGG+TGG | - | chr8.4:35825131-35825150 | MS.gene038450:CDS | 55.0% | |
| CGGCGAGTTTAGCGAAATCG+CGG | - | chr8.4:35825128-35825147 | MS.gene038450:CDS | 55.0% | |
| GGAGTGTGATTGAGCAGCCT+AGG | - | chr8.4:35823703-35823722 | MS.gene038450:intron | 55.0% | |
| GGCCTCTGACTCACAATGGA+AGG | + | chr8.4:35825566-35825585 | None:intergenic | 55.0% | |
| GTCAACCGACCAAGCTGACT+GGG | - | chr8.4:35823362-35823381 | MS.gene038450:CDS | 55.0% | |
| GTTTGGATCGACGGTGAGAC+TGG | + | chr8.4:35825230-35825249 | None:intergenic | 55.0% | |
| TCCACCACCACCATAACCAC+CGG | + | chr8.4:35823916-35823935 | None:intergenic | 55.0% | |
| TCCATTGTGAGTCAGAGGCC+AGG | - | chr8.4:35825566-35825585 | MS.gene038450:CDS | 55.0% | |
| TCCTGGCCTCTGACTCACAA+TGG | + | chr8.4:35825570-35825589 | None:intergenic | 55.0% | |
| TCGAATCGCGCGAAAGCGAT+AGG | - | chr8.4:35823531-35823550 | MS.gene038450:CDS | 55.0% | |
| TGGAACGGAAACGATGCTGG+TGG | - | chr8.4:35823408-35823427 | MS.gene038450:CDS | 55.0% | |
| TGTGATTGAGCAGCCTAGGG+AGG | - | chr8.4:35823707-35823726 | MS.gene038450:intron | 55.0% | |
| TTAGGTCCCGGTGGTTATGG+TGG | - | chr8.4:35823906-35823925 | MS.gene038450:intron | 55.0% | |
| !! | GCGATTAGTTTAGGTCCCGG+TGG | - | chr8.4:35823897-35823916 | MS.gene038450:intron | 55.0% |
| !! | GGGAGTGTTGGTAGTGTTGG+TGG | - | chr8.4:35823957-35823976 | MS.gene038450:intron | 55.0% |
| !! | GGTGGGAGTGTTGGTAGTGT+TGG | - | chr8.4:35823954-35823973 | MS.gene038450:intron | 55.0% |
| CAAATCATCACCACCGGCGG+CGG | - | chr8.4:35823324-35823343 | MS.gene038450:CDS | 60.0% | |
| CCACCACCACCATAACCACC+GGG | + | chr8.4:35823915-35823934 | None:intergenic | 60.0% | |
| GGTCAACCGACCAAGCTGAC+TGG | - | chr8.4:35823361-35823380 | MS.gene038450:CDS | 60.0% | |
| GTCGGTTGACCAGCTATCGG+CGG | + | chr8.4:35823352-35823371 | None:intergenic | 60.0% | |
| !! | CAAGATGGTGGTGGTGGCAG+TGG | - | chr8.4:35823501-35823520 | MS.gene038450:CDS | 60.0% |
| !! | GGTGGTTATGGTGGTGGTGG+AGG | - | chr8.4:35823915-35823934 | MS.gene038450:intron | 60.0% |
| !! | GGTTATGGTGGTGGTGGAGG+TGG | - | chr8.4:35823918-35823937 | MS.gene038450:intron | 60.0% |
| !! | TATGGTGGTGGTGGAGGTGG+TGG | - | chr8.4:35823921-35823940 | MS.gene038450:intron | 60.0% |
| CGACCAAGCTGACTGGGCGA+CGG | - | chr8.4:35823368-35823387 | MS.gene038450:CDS | 65.0% | |
| CGTCGCCCAGTCAGCTTGGT+CGG | + | chr8.4:35823370-35823389 | None:intergenic | 65.0% | |
| CTTCCGTCGCCCAGTCAGCT+TGG | + | chr8.4:35823374-35823393 | None:intergenic | 65.0% | |
| GGTCCCGGTGGTTATGGTGG+TGG | - | chr8.4:35823909-35823928 | MS.gene038450:intron | 65.0% | |
| ! | GGAGGAGGAGGTGGGAGTGT+TGG | - | chr8.4:35823945-35823964 | MS.gene038450:intron | 65.0% |
| ! | GTGGTGGAGGAGGAGGAGGT+GGG | - | chr8.4:35823937-35823956 | MS.gene038450:intron | 65.0% |
| !! | CCCGGTGGTTATGGTGGTGG+TGG | - | chr8.4:35823912-35823931 | MS.gene038450:intron | 65.0% |
| !! | GATGGTGGTGGTGGCAGTGG+AGG | - | chr8.4:35823504-35823523 | MS.gene038450:CDS | 65.0% |
| TCGGCCGCCGGAGAATTGGC+AGG | - | chr8.4:35823653-35823672 | MS.gene038450:intron | 70.0% | |
| TGTTGCAGCTGGTGCGGCCG+CGG | - | chr8.4:35824001-35824020 | MS.gene038450:intron | 70.0% | |
| ! | TGCGTCGGCCGCCGGAGAAT+TGG | - | chr8.4:35823649-35823668 | MS.gene038450:intron | 70.0% |
| !! | GGAGGTGGTGGAGGAGGAGG+AGG | - | chr8.4:35823933-35823952 | MS.gene038450:intron | 70.0% |
| !! | GGTGGAGGTGGTGGAGGAGG+AGG | - | chr8.4:35823930-35823949 | MS.gene038450:intron | 70.0% |
| !! | GGTGGTGGAGGAGGAGGAGG+TGG | - | chr8.4:35823936-35823955 | MS.gene038450:intron | 70.0% |
| !! | GGTGGTGGAGGTGGTGGAGG+AGG | - | chr8.4:35823927-35823946 | MS.gene038450:intron | 70.0% |
| !! | GGTGGTGGTGGAGGTGGTGG+AGG | - | chr8.4:35823924-35823943 | MS.gene038450:intron | 70.0% |
| !! | GGTGGTGGTGGCAGTGGAGG+AGG | - | chr8.4:35823507-35823526 | MS.gene038450:CDS | 70.0% |
| CAGCTGGTGCGGCCGCGGTT+GGG | - | chr8.4:35824006-35824025 | MS.gene038450:intron | 75.0% | |
| GGTGCGGCCGCGGTTGGGAA+TGG | - | chr8.4:35824011-35824030 | MS.gene038450:intron | 75.0% | |
| ! | GCAGCTGGTGCGGCCGCGGT+TGG | - | chr8.4:35824005-35824024 | MS.gene038450:intron | 80.0% |
| ! | GCGGCGGAGCCGCCGATAGC+TGG | - | chr8.4:35823340-35823359 | MS.gene038450:CDS | 80.0% |
| ! | GCTATCGGCGGCTCCGCCGC+CGG | + | chr8.4:35823340-35823359 | None:intergenic | 80.0% |
| !! | GGAGGAGCTGCGTCGGCCGC+CGG | - | chr8.4:35823641-35823660 | MS.gene038450:intron | 80.0% |
| ! | ATCGGCGGCTCCGCCGCCGG+TGG | + | chr8.4:35823337-35823356 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 35823294 | 35825667 | 35823294 | ID=MS.gene038450 |
| chr8.4 | mRNA | 35823294 | 35825667 | 35823294 | ID=MS.gene038450.t1;Parent=MS.gene038450 |
| chr8.4 | exon | 35824821 | 35825667 | 35824821 | ID=MS.gene038450.t1.exon1;Parent=MS.gene038450.t1 |
| chr8.4 | CDS | 35824821 | 35825667 | 35824821 | ID=cds.MS.gene038450.t1;Parent=MS.gene038450.t1 |
| chr8.4 | exon | 35823294 | 35823571 | 35823294 | ID=MS.gene038450.t1.exon2;Parent=MS.gene038450.t1 |
| chr8.4 | CDS | 35823294 | 35823571 | 35823294 | ID=cds.MS.gene038450.t1;Parent=MS.gene038450.t1 |
| Gene Sequence |
| Protein sequence |
