AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038485

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038485.t1 MTR_8g095330 75.758 99 20 1 2 100 24 118 3.24e-46 151
MS.gene038485.t1 MTR_4g086855 84.416 77 12 0 24 100 60 136 4.43e-45 149
MS.gene038485.t1 MTR_3g097320 72.727 99 23 1 2 100 23 117 1.14e-44 147
MS.gene038485.t1 MTR_4g099240 83.117 77 13 0 24 100 42 118 1.33e-43 144
MS.gene038485.t1 MTR_1g034030 79.518 83 17 0 18 100 55 137 3.22e-43 144
MS.gene038485.t1 MTR_2g006330 73.684 95 21 1 6 100 27 117 3.24e-43 144
MS.gene038485.t1 MTR_1g034030 79.518 83 17 0 18 100 55 137 4.84e-43 142
MS.gene038485.t1 MTR_5g064540 73.810 84 22 0 18 101 35 118 7.22e-43 142
MS.gene038485.t1 MTR_8g079560 81.818 77 14 0 24 100 60 136 1.02e-42 142
MS.gene038485.t1 MTR_5g064540 73.810 84 22 0 18 101 35 118 3.51e-42 139
MS.gene038485.t1 MTR_8g089975 77.108 83 19 0 18 100 35 117 1.66e-41 139
MS.gene038485.t1 MTR_5g018050 76.623 77 18 0 24 100 55 131 7.42e-41 137
MS.gene038485.t1 MTR_3g086940 74.699 83 21 0 18 100 36 118 8.78e-41 137
MS.gene038485.t1 MTR_5g018050 74.684 79 20 0 22 100 20 98 8.82e-41 137
MS.gene038485.t1 MTR_5g018050 72.289 83 23 0 18 100 49 131 1.90e-40 134
MS.gene038485.t1 MTR_5g013550 72.289 83 23 0 18 100 37 119 1.00e-38 132
MS.gene038485.t1 MTR_4g099220 68.675 83 26 0 18 100 42 124 8.48e-35 121
MS.gene038485.t1 MTR_8g088740 64.103 78 28 0 23 100 40 117 1.80e-34 117
MS.gene038485.t1 MTR_4g086855 82.500 40 7 0 61 100 2 41 8.26e-19 78.6
MS.gene038485.t1 MTR_5g075100 50.685 73 36 0 27 99 67 139 1.07e-18 79.7
MS.gene038485.t1 MTR_8g089975 82.500 40 7 0 61 100 2 41 3.66e-18 76.6
MS.gene038485.t1 MTR_2g006330 80.000 40 8 0 61 100 2 41 1.04e-17 75.9
MS.gene038485.t1 MTR_6g012990 48.052 77 40 0 22 98 58 134 1.15e-17 76.3
MS.gene038485.t1 MTR_6g012990 48.052 77 40 0 22 98 58 134 1.56e-17 76.3
MS.gene038485.t1 MTR_2g049790 44.444 72 40 0 28 99 68 139 2.64e-17 75.9
MS.gene038485.t1 MTR_6g048250 46.753 77 41 0 22 98 58 134 4.58e-17 75.1
MS.gene038485.t1 MTR_6g048250 46.753 77 41 0 22 98 58 134 4.84e-17 75.1
MS.gene038485.t1 MTR_5g088350 40.000 85 49 1 15 99 47 129 6.38e-17 74.3
MS.gene038485.t1 MTR_5g088350 40.000 85 49 1 15 99 47 129 8.11e-17 74.3
MS.gene038485.t1 MTR_5g088350 40.000 85 49 1 15 99 47 129 9.43e-17 73.9
MS.gene038485.t1 MTR_1g013700 47.297 74 38 1 26 99 56 128 9.50e-17 73.9
MS.gene038485.t1 MTR_6g012980 45.333 75 41 0 24 98 114 188 1.04e-16 73.9
MS.gene038485.t1 MTR_5g067150 41.892 74 43 0 26 99 52 125 3.61e-16 72.4
MS.gene038485.t1 MTR_5g067150 41.892 74 43 0 26 99 52 125 3.96e-16 72.4
MS.gene038485.t1 MTR_5g067150 41.892 74 43 0 26 99 52 125 4.71e-16 72.0
MS.gene038485.t1 MTR_6g048250 46.753 77 41 0 22 98 58 134 5.70e-16 71.6
MS.gene038485.t1 MTR_1g076370 40.260 77 45 1 23 98 61 137 9.05e-16 71.2
MS.gene038485.t1 MTR_4g123940 38.462 78 48 0 22 99 65 142 1.51e-15 70.5
MS.gene038485.t1 MTR_4g123940 38.462 78 48 0 22 99 65 142 1.85e-15 70.5
MS.gene038485.t1 MTR_7g072575 40.000 80 47 1 20 99 49 127 2.34e-15 70.1
MS.gene038485.t1 MTR_8g024600 41.892 74 43 0 26 99 60 133 2.74e-15 70.1
MS.gene038485.t1 MTR_8g024590 41.892 74 43 0 26 99 60 133 2.76e-15 70.1
MS.gene038485.t1 MTR_2g045470 39.726 73 44 0 26 98 63 135 2.91e-15 70.1
MS.gene038485.t1 MTR_3g099920 42.857 77 44 0 22 98 58 134 6.10e-15 68.9
MS.gene038485.t1 MTR_4g128820 42.105 76 44 0 23 98 50 125 6.67e-15 68.9
MS.gene038485.t1 MTR_3g466480 46.154 78 41 1 22 99 60 136 9.07e-15 68.6
MS.gene038485.t1 MTR_4g029020 37.975 79 48 1 21 99 50 127 1.25e-14 68.2
MS.gene038485.t1 MTR_7g072605 42.466 73 42 0 27 99 61 133 2.35e-14 67.4
MS.gene038485.t1 MTR_8g086380 39.535 86 43 2 22 99 57 141 3.30e-14 67.0
MS.gene038485.t1 MTR_4g114670 38.356 73 45 0 26 98 54 126 3.36e-14 67.0
MS.gene038485.t1 MTR_4g114670 38.356 73 45 0 26 98 54 126 3.40e-14 67.0
MS.gene038485.t1 MTR_3g466400 41.892 74 42 1 26 99 57 129 6.64e-14 66.2
MS.gene038485.t1 MTR_4g114670 38.356 73 45 0 26 98 54 126 9.99e-14 65.5
MS.gene038485.t1 MTR_2g016340 39.744 78 46 1 21 98 50 126 1.06e-13 65.5
MS.gene038485.t1 MTR_4g006970 39.189 74 44 1 26 99 63 135 2.09e-13 64.7
MS.gene038485.t1 MTR_4g131060 36.709 79 49 1 21 99 56 133 7.28e-13 63.2
MS.gene038485.t1 MTR_1g103760 35.897 78 49 1 21 98 50 126 3.26e-12 61.2
MS.gene038485.t1 MTR_1g040875 36.364 77 48 1 23 98 64 140 5.32e-12 60.8
MS.gene038485.t1 MTR_5g075060 40.278 72 42 1 28 99 57 127 7.21e-12 60.5
MS.gene038485.t1 MTR_2g105010 36.486 74 46 1 26 99 57 129 9.57e-12 60.1
MS.gene038485.t1 MTR_3g072320 38.235 68 39 1 31 98 60 124 2.65e-11 58.5
MS.gene038485.t1 MTR_7g116530 52.542 59 17 1 22 80 27 74 3.65e-11 55.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038485.t1 AT1G10940 83.133 83 14 0 18 100 35 117 2.01e-44 147
MS.gene038485.t1 AT3G50500 83.117 77 13 0 24 100 60 136 3.29e-44 147
MS.gene038485.t1 AT3G50500 83.117 77 13 0 24 100 60 136 4.71e-44 146
MS.gene038485.t1 AT1G60940 81.928 83 15 0 18 100 35 117 6.58e-44 145
MS.gene038485.t1 AT1G60940 81.928 83 15 0 18 100 35 117 6.58e-44 145
MS.gene038485.t1 AT4G33950 79.518 83 17 0 18 100 52 134 2.92e-43 144
MS.gene038485.t1 AT4G33950 79.518 83 17 0 18 100 52 134 3.38e-43 144
MS.gene038485.t1 AT5G66880 79.221 77 16 0 24 100 59 135 3.41e-43 144
MS.gene038485.t1 AT5G66880 79.221 77 16 0 24 100 59 135 3.41e-43 144
MS.gene038485.t1 AT5G63650 72.632 95 22 1 6 100 27 117 8.59e-42 140
MS.gene038485.t1 AT1G10940 75.824 91 14 1 18 100 35 125 1.62e-41 140
MS.gene038485.t1 AT4G40010 75.904 83 20 0 18 100 35 117 1.19e-40 137
MS.gene038485.t1 AT5G08590 69.474 95 25 1 6 100 27 117 2.01e-40 136
MS.gene038485.t1 AT2G23030 76.923 78 18 0 23 100 40 117 3.18e-37 128
MS.gene038485.t1 AT1G78290 71.084 83 24 0 18 100 35 117 1.35e-36 126
MS.gene038485.t1 AT1G78290 71.084 83 24 0 18 100 35 117 1.35e-36 126
MS.gene038485.t1 AT4G11373 70.886 79 16 1 23 101 9 80 7.13e-32 108
MS.gene038485.t1 AT2G26980 40.000 85 49 1 15 99 48 130 4.80e-19 80.5
MS.gene038485.t1 AT2G26980 40.000 85 49 1 15 99 48 130 5.92e-19 80.5
MS.gene038485.t1 AT2G26980 40.000 85 49 1 15 99 58 140 6.04e-19 80.5
MS.gene038485.t1 AT2G26980 40.000 85 49 1 15 99 48 130 6.79e-19 80.1
MS.gene038485.t1 AT2G26980 40.000 85 49 1 15 99 48 130 6.95e-19 79.0
MS.gene038485.t1 AT3G01090 48.052 77 40 0 22 98 58 134 3.48e-17 75.5
MS.gene038485.t1 AT3G01090 48.052 77 40 0 22 98 58 134 3.48e-17 75.5
MS.gene038485.t1 AT3G01090 48.052 77 40 0 22 98 81 157 3.50e-17 75.5
MS.gene038485.t1 AT1G30270 43.056 72 41 0 28 99 76 147 1.33e-16 73.9
MS.gene038485.t1 AT1G30270 43.056 72 41 0 28 99 76 147 1.34e-16 73.9
MS.gene038485.t1 AT1G01140 40.000 80 48 0 20 99 56 135 1.91e-16 73.2
MS.gene038485.t1 AT1G01140 40.000 80 48 0 20 99 56 135 1.91e-16 73.2
MS.gene038485.t1 AT1G01140 40.000 80 48 0 20 99 56 135 1.92e-16 73.2
MS.gene038485.t1 AT5G39440 45.455 77 42 0 22 98 58 134 2.33e-16 73.2
MS.gene038485.t1 AT5G21326 37.647 85 51 1 15 99 47 129 2.37e-16 73.2
MS.gene038485.t1 AT4G24400 43.243 74 42 0 26 99 52 125 3.14e-16 72.8
MS.gene038485.t1 AT4G24400 43.243 74 42 0 26 99 52 125 3.93e-16 72.4
MS.gene038485.t1 AT2G30360 41.558 77 45 0 23 99 62 138 3.96e-16 72.4
MS.gene038485.t1 AT1G48260 39.744 78 47 0 21 98 49 126 5.51e-16 72.0
MS.gene038485.t1 AT5G35410 41.096 73 43 0 26 98 54 126 7.43e-16 71.6
MS.gene038485.t1 AT5G35410 41.096 73 43 0 26 98 54 126 7.79e-16 71.6
MS.gene038485.t1 AT2G25090 41.772 79 46 0 21 99 54 132 1.59e-15 70.9
MS.gene038485.t1 AT5G25110 41.772 79 45 1 21 99 81 158 1.73e-15 70.5
MS.gene038485.t1 AT5G01820 43.421 76 42 1 24 99 63 137 1.97e-15 70.5
MS.gene038485.t1 AT2G38490 47.945 73 37 1 27 99 72 143 2.35e-15 70.1
MS.gene038485.t1 AT3G29160 45.455 77 42 0 22 98 59 135 2.36e-15 70.1
MS.gene038485.t1 AT3G29160 45.455 77 42 0 22 98 59 135 3.19e-15 70.1
MS.gene038485.t1 AT3G29160 45.455 77 42 0 22 98 59 135 3.19e-15 70.1
MS.gene038485.t1 AT5G08590 72.500 40 11 0 61 100 2 41 4.32e-15 68.6
MS.gene038485.t1 AT5G21222 39.189 74 45 0 26 99 56 129 5.50e-15 69.3
MS.gene038485.t1 AT5G21222 39.189 74 45 0 26 99 56 129 5.50e-15 69.3
MS.gene038485.t1 AT5G21222 39.189 74 45 0 26 99 56 129 5.50e-15 69.3
MS.gene038485.t1 AT5G21222 39.189 74 45 0 26 99 56 129 5.50e-15 69.3
MS.gene038485.t1 AT5G01810 39.241 79 47 1 21 99 50 127 7.61e-15 68.6
MS.gene038485.t1 AT5G01810 39.241 79 47 1 21 99 50 127 8.13e-15 68.6
MS.gene038485.t1 AT5G01810 39.241 79 47 1 21 99 50 127 8.13e-15 68.6
MS.gene038485.t1 AT3G17510 38.889 72 44 0 28 99 65 136 1.26e-14 68.2
MS.gene038485.t1 AT5G10930 41.772 79 45 1 21 99 51 128 1.27e-14 68.2
MS.gene038485.t1 AT4G18700 34.906 106 49 2 13 99 37 141 1.17e-13 65.5
MS.gene038485.t1 AT5G45810 41.667 72 41 1 27 98 72 142 2.23e-13 64.7
MS.gene038485.t1 AT4G14580 37.037 81 46 1 23 98 57 137 3.91e-13 63.9
MS.gene038485.t1 AT5G07070 36.709 79 49 1 21 99 50 127 1.58e-12 62.4
MS.gene038485.t1 AT5G58380 37.975 79 48 1 21 99 50 127 2.20e-12 62.0
MS.gene038485.t1 AT5G57630 35.556 90 57 1 9 98 38 126 2.49e-12 61.6
MS.gene038485.t1 AT5G57630 35.556 90 57 1 9 98 38 126 2.51e-12 61.6
MS.gene038485.t1 AT1G29230 41.096 73 42 1 27 99 118 189 4.21e-12 60.8
MS.gene038485.t1 AT5G45820 34.177 79 51 1 21 99 50 127 4.41e-12 60.8
MS.gene038485.t1 AT4G30960 36.486 74 46 1 26 99 67 139 1.65e-11 59.3
MS.gene038485.t1 AT3G23000 33.696 92 60 1 8 98 50 141 2.37e-11 58.9
MS.gene038485.t1 AT2G34180 42.466 73 41 1 27 99 101 172 3.61e-11 58.5

Find 31 sgRNAs with CRISPR-Local

Find 69 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTTTCGGCAGCTGATATA+TGG 0.264209 8.4:+36357545 MS.gene038485:CDS
TCCTTGAAACGAATTATATT+CGG 0.302255 8.4:-36357217 None:intergenic
GCTGAACCGACCAGCATTAC+AGG 0.337585 8.4:-36357414 None:intergenic
TCCAGGCTAGATATTTCTTT+CGG 0.398144 8.4:+36357531 MS.gene038485:intron
CCCGAATATAATTCGTTTCA+AGG 0.408070 8.4:+36357216 MS.gene038485:CDS
AGGCTTGATGGTGCAATTCA+TGG 0.410361 8.4:-36356748 None:intergenic
AAGCTTCACCAGAGGCTTGA+TGG 0.417893 8.4:-36356760 None:intergenic
CCTTGAAACGAATTATATTC+GGG 0.472706 8.4:-36357216 None:intergenic
TTACTATTGCTAAATGAGTA+GGG 0.480215 8.4:-36357355 None:intergenic
GTTACTATTGCTAAATGAGT+AGG 0.487288 8.4:-36357356 None:intergenic
ATCAAGCCTCTGGTGAAGCT+TGG 0.488088 8.4:+36356762 MS.gene038485:CDS
ATACCGATACTCGGTATTCA+AGG 0.517798 8.4:-36356800 None:intergenic
GAATTGCACCATCAAGCCTC+TGG 0.521090 8.4:+36356752 MS.gene038485:CDS
ATAGTAACACAGTATGCAGC+TGG 0.534252 8.4:+36357371 MS.gene038485:CDS
TTATCAACCACAGATCTCTT+CGG 0.555612 8.4:+36357191 MS.gene038485:CDS
TTTCCAGATTGATGAGAATG+TGG 0.567042 8.4:+36357159 MS.gene038485:intron
TTTGAGAGGACCTGTAATGC+TGG 0.569556 8.4:+36357404 MS.gene038485:CDS
GGTGAAGCTTGGCTTTCTCG+AGG 0.584023 8.4:+36356773 MS.gene038485:CDS
TTGCCTTGAATACCGAGTAT+CGG 0.587998 8.4:+36356797 MS.gene038485:CDS
AGAGGACCTGTAATGCTGGT+CGG 0.592162 8.4:+36357408 MS.gene038485:CDS
AACACAGTATGCAGCTGGAG+GGG 0.600335 8.4:+36357376 MS.gene038485:CDS
TGTCTATTACTGTCATGCTA+TGG 0.610007 8.4:+36357568 MS.gene038485:CDS
TAACACAGTATGCAGCTGGA+GGG 0.620264 8.4:+36357375 MS.gene038485:CDS
TGGTCGGTTCAGCGAAGATG+AGG 0.629226 8.4:+36357424 MS.gene038485:CDS
CTGGAGGGGAACTCTTTGAG+AGG 0.634190 8.4:+36357390 MS.gene038485:CDS
TACTATTGCTAAATGAGTAG+GGG 0.652424 8.4:-36357354 None:intergenic
GTAACACAGTATGCAGCTGG+AGG 0.656720 8.4:+36357374 MS.gene038485:CDS
GGAGCATGAATACCGATACT+CGG 0.660481 8.4:-36356809 None:intergenic
TCGGGTGCCGAAGAGATCTG+TGG 0.687028 8.4:-36357198 None:intergenic
AGAAAGCCAAGCTTCACCAG+AGG 0.702351 8.4:-36356768 None:intergenic
GAATATAATTCGTTTCAAGG+AGG 0.712614 8.4:+36357219 MS.gene038485:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAACTTTTCAAAATC+AGG - chr8.4:36357060-36357079 None:intergenic 15.0%
!!! ATAATAACTTTTCAAAATCA+GGG - chr8.4:36357059-36357078 None:intergenic 15.0%
!! AAATTAAAGAAATTGAACAG+GGG + chr8.4:36356987-36357006 MS.gene038485:intron 20.0%
!! ACCAATGTTTATTAAAATAG+GGG - chr8.4:36356905-36356924 None:intergenic 20.0%
!! CAAATTAAAGAAATTGAACA+GGG + chr8.4:36356986-36357005 MS.gene038485:intron 20.0%
!! CACCAATGTTTATTAAAATA+GGG - chr8.4:36356906-36356925 None:intergenic 20.0%
!!! GTTATTATTTGTTGAAAAGA+AGG + chr8.4:36357071-36357090 MS.gene038485:intron 20.0%
!!! TAATAACTTTTCAAAATCAG+GGG - chr8.4:36357058-36357077 None:intergenic 20.0%
! CCACCAATGTTTATTAAAAT+AGG - chr8.4:36356907-36356926 None:intergenic 25.0%
! GCAAATTAAAGAAATTGAAC+AGG + chr8.4:36356985-36357004 MS.gene038485:intron 25.0%
! TCCTTGAAACGAATTATATT+CGG - chr8.4:36357220-36357239 None:intergenic 25.0%
! TTACTATTGCTAAATGAGTA+GGG - chr8.4:36357358-36357377 None:intergenic 25.0%
!! TTGTTAACTGTTACTTCAAT+GGG + chr8.4:36357306-36357325 MS.gene038485:intron 25.0%
!!! AAAGCTATTATTTTGACATC+TGG + chr8.4:36357098-36357117 MS.gene038485:intron 25.0%
!!! AACCCTTTTAAGAGAAAAAA+TGG - chr8.4:36356870-36356889 None:intergenic 25.0%
!!! AAGCTATTATTTTGACATCT+GGG + chr8.4:36357099-36357118 MS.gene038485:intron 25.0%
!!! AGACCATTTTTTCTCTTAAA+AGG + chr8.4:36356864-36356883 MS.gene038485:intron 25.0%
!!! CCTATTTTAATAAACATTGG+TGG + chr8.4:36356904-36356923 MS.gene038485:intron 25.0%
!!! GACCATTTTTTCTCTTAAAA+GGG + chr8.4:36356865-36356884 MS.gene038485:intron 25.0%
!!! TATTTTTCCTTTGTTTATCC+AGG + chr8.4:36357514-36357533 MS.gene038485:intron 25.0%
!!! TCCCCTATTTTAATAAACAT+TGG + chr8.4:36356901-36356920 MS.gene038485:intron 25.0%
ATGAGGTTAATAACTTGACA+TGG + chr8.4:36357441-36357460 MS.gene038485:intron 30.0%
CCTTGAAACGAATTATATTC+GGG - chr8.4:36357219-36357238 None:intergenic 30.0%
GAATATAATTCGTTTCAAGG+AGG + chr8.4:36357219-36357238 MS.gene038485:CDS 30.0%
GTTACTATTGCTAAATGAGT+AGG - chr8.4:36357359-36357378 None:intergenic 30.0%
TACTATTGCTAAATGAGTAG+GGG - chr8.4:36357357-36357376 None:intergenic 30.0%
! GACTTTATTTGTTTACCTGT+TGG + chr8.4:36357246-36357265 MS.gene038485:intron 30.0%
! GTTGTTAACTGTTACTTCAA+TGG + chr8.4:36357305-36357324 MS.gene038485:intron 30.0%
! TGTTAACTGTTACTTCAATG+GGG + chr8.4:36357307-36357326 MS.gene038485:intron 30.0%
CCCGAATATAATTCGTTTCA+AGG + chr8.4:36357216-36357235 MS.gene038485:CDS 35.0%
TAATTCGTTTCAAGGAGGTA+AGG + chr8.4:36357224-36357243 MS.gene038485:intron 35.0%
TATCTAGCCTGGATAAACAA+AGG - chr8.4:36357524-36357543 None:intergenic 35.0%
TCAATACAAACTGATCCAAC+AGG - chr8.4:36357264-36357283 None:intergenic 35.0%
TCCAGGCTAGATATTTCTTT+CGG + chr8.4:36357531-36357550 MS.gene038485:intron 35.0%
TGTCTATTACTGTCATGCTA+TGG + chr8.4:36357568-36357587 MS.gene038485:CDS 35.0%
TTATCAACCACAGATCTCTT+CGG + chr8.4:36357191-36357210 MS.gene038485:CDS 35.0%
TTTCCAGATTGATGAGAATG+TGG + chr8.4:36357159-36357178 MS.gene038485:intron 35.0%
TTTGCACAAATGCATTGAAG+CGG - chr8.4:36356970-36356989 None:intergenic 35.0%
!! TACTTCAATGGGGTTTTGAT+TGG + chr8.4:36357317-36357336 MS.gene038485:intron 35.0%
AAGCGGCCTAAAAAATTCGA+GGG - chr8.4:36356953-36356972 None:intergenic 40.0%
ATACCGATACTCGGTATTCA+AGG - chr8.4:36356803-36356822 None:intergenic 40.0%
ATAGTAACACAGTATGCAGC+TGG + chr8.4:36357371-36357390 MS.gene038485:CDS 40.0%
TAGCCACATTCTCATCAATC+TGG - chr8.4:36357165-36357184 None:intergenic 40.0%
TTCTTTCGGCAGCTGATATA+TGG + chr8.4:36357545-36357564 MS.gene038485:CDS 40.0%
TTGCCTTGAATACCGAGTAT+CGG + chr8.4:36356797-36356816 MS.gene038485:CDS 40.0%
ACCTCGAGATTATTCTAGCC+AGG - chr8.4:36356836-36356855 None:intergenic 45.0%
GAAGCGGCCTAAAAAATTCG+AGG - chr8.4:36356954-36356973 None:intergenic 45.0%
GCCGAAAGAAATATCTAGCC+TGG - chr8.4:36357535-36357554 None:intergenic 45.0%
GGAGCATGAATACCGATACT+CGG - chr8.4:36356812-36356831 None:intergenic 45.0%
TAACACAGTATGCAGCTGGA+GGG + chr8.4:36357375-36357394 MS.gene038485:CDS 45.0%
TCCTGGCTAGAATAATCTCG+AGG + chr8.4:36356832-36356851 MS.gene038485:intron 45.0%
TCGAGATTATTCTAGCCAGG+AGG - chr8.4:36356833-36356852 None:intergenic 45.0%
TTTGAGAGGACCTGTAATGC+TGG + chr8.4:36357404-36357423 MS.gene038485:CDS 45.0%
!!! CAATGGGGTTTTGATTGGTC+AGG + chr8.4:36357322-36357341 MS.gene038485:intron 45.0%
!!! GAGCAGCCCTCGAATTTTTT+AGG + chr8.4:36356944-36356963 MS.gene038485:intron 45.0%
AACACAGTATGCAGCTGGAG+GGG + chr8.4:36357376-36357395 MS.gene038485:CDS 50.0%
AAGCTTCACCAGAGGCTTGA+TGG - chr8.4:36356763-36356782 None:intergenic 50.0%
AGAAAGCCAAGCTTCACCAG+AGG - chr8.4:36356771-36356790 None:intergenic 50.0%
AGAGGACCTGTAATGCTGGT+CGG + chr8.4:36357408-36357427 MS.gene038485:CDS 50.0%
ATCAAGCCTCTGGTGAAGCT+TGG + chr8.4:36356762-36356781 MS.gene038485:CDS 50.0%
ATCGGTATTCATGCTCCTCC+TGG + chr8.4:36356815-36356834 MS.gene038485:intron 50.0%
GAATTGCACCATCAAGCCTC+TGG + chr8.4:36356752-36356771 MS.gene038485:CDS 50.0%
GTAACACAGTATGCAGCTGG+AGG + chr8.4:36357374-36357393 MS.gene038485:CDS 50.0%
!!! TGGGGTTTTGATTGGTCAGG+TGG + chr8.4:36357325-36357344 MS.gene038485:intron 50.0%
CTGGAGGGGAACTCTTTGAG+AGG + chr8.4:36357390-36357409 MS.gene038485:CDS 55.0%
GCTGAACCGACCAGCATTAC+AGG - chr8.4:36357417-36357436 None:intergenic 55.0%
! GGTGAAGCTTGGCTTTCTCG+AGG + chr8.4:36356773-36356792 MS.gene038485:CDS 55.0%
! TGGTCGGTTCAGCGAAGATG+AGG + chr8.4:36357424-36357443 MS.gene038485:CDS 55.0%
!! TCGGGTGCCGAAGAGATCTG+TGG - chr8.4:36357201-36357220 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 36356750 36357595 36356750 ID=MS.gene038485
chr8.4 mRNA 36356750 36357595 36356750 ID=MS.gene038485.t1;Parent=MS.gene038485
chr8.4 exon 36356750 36356818 36356750 ID=MS.gene038485.t1.exon1;Parent=MS.gene038485.t1
chr8.4 CDS 36356750 36356818 36356750 ID=cds.MS.gene038485.t1;Parent=MS.gene038485.t1
chr8.4 exon 36357166 36357240 36357166 ID=MS.gene038485.t1.exon2;Parent=MS.gene038485.t1
chr8.4 CDS 36357166 36357240 36357166 ID=cds.MS.gene038485.t1;Parent=MS.gene038485.t1
chr8.4 exon 36357344 36357445 36357344 ID=MS.gene038485.t1.exon3;Parent=MS.gene038485.t1
chr8.4 CDS 36357344 36357445 36357344 ID=cds.MS.gene038485.t1;Parent=MS.gene038485.t1
chr8.4 exon 36357536 36357595 36357536 ID=MS.gene038485.t1.exon4;Parent=MS.gene038485.t1
chr8.4 CDS 36357536 36357595 36357536 ID=cds.MS.gene038485.t1;Parent=MS.gene038485.t1
Gene Sequence

>MS.gene038485

ATGAATTGCACCATCAAGCCTCTGGTGAAGCTTGGCTTTCTCGAGGTTTGCCTTGAATACCGAGTATCGGTATTCATGCTCCTCCTGGCTAGAATAATCTCGAGGTTTTCTCAAAGACCATTTTTTCTCTTAAAAGGGTTTTTTCGACGTTTCCCCTATTTTAATAAACATTGGTGGCGACTTCATTGTCTTTCGAGCAGCCCTCGAATTTTTTAGGCCGCTTCAATGCATTTGTGCAAATTAAAGAAATTGAACAGGGGATAGAAAAATTCAATTAAAAATTATAGCTTTCACACATGAAGCTTCCCCTGATTTTGAAAAGTTATTATTTGTTGAAAAGAAGGAAAAAAAGCTATTATTTTGACATCTGGGATTATCAGTTTTTTTTCTAGTTTTTTCTGCTACTTCATTTCCAGATTGATGAGAATGTGGCTAGCGAGATTATCAACCACAGATCTCTTCGGCACCCGAATATAATTCGTTTCAAGGAGGTAAGGACTTTATTTGTTTACCTGTTGGATCAGTTTGTATTGATTACACTGTTAATTGTTCTGAGTTGTTAACTGTTACTTCAATGGGGTTTTGATTGGTCAGGTGGTTTTGACCCCTACTCATTTAGCAATAGTAACACAGTATGCAGCTGGAGGGGAACTCTTTGAGAGGACCTGTAATGCTGGTCGGTTCAGCGAAGATGAGGTTAATAACTTGACATGGTTTCAGAATTTTCTGTTTCAGTGTCATTGTTGTTGTATTCATATCTCATTTATTTTTCCTTTGTTTATCCAGGCTAGATATTTCTTTCGGCAGCTGATATATGGTGTCTATTACTGTCATGCTATGGTATAA
Protein sequence

>MS.gene038485.t1

MNCTIKPLVKLGFLEVCLEYRVSIDENVASEIINHRSLRHPNIIRFKEVVLTPTHLAIVTQYAAGGELFERTCNAGRFSEDEARYFFRQLIYGVYYCHAMV