AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038511

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038511.t1 MTR_8g065740 97.436 468 11 1 1 468 1 467 0.0 936
MS.gene038511.t1 MTR_5g048860 57.875 527 146 13 1 460 1 518 2.95e-178 511
MS.gene038511.t1 MTR_1g017350 42.675 314 142 9 115 421 92 374 1.45e-56 193
MS.gene038511.t1 MTR_1g017350 42.675 314 142 9 115 421 92 374 1.46e-56 193
MS.gene038511.t1 MTR_1g017350 41.718 326 136 11 115 416 92 387 6.34e-54 186
MS.gene038511.t1 MTR_1g017350 41.718 326 136 11 115 416 92 387 9.33e-54 186
MS.gene038511.t1 MTR_3g116770 44.151 265 113 8 135 393 43 278 4.11e-51 178
MS.gene038511.t1 MTR_3g116770 44.151 265 113 8 135 393 43 278 4.32e-51 178
MS.gene038511.t1 MTR_7g053410 39.189 370 185 13 126 468 128 484 5.09e-51 181
MS.gene038511.t1 MTR_7g053410 39.189 370 185 13 126 468 128 484 7.78e-51 181
MS.gene038511.t1 MTR_8g012290 39.349 338 158 15 127 431 93 416 2.73e-49 176
MS.gene038511.t1 MTR_8g012290 39.349 338 158 15 127 431 93 416 2.91e-49 176
MS.gene038511.t1 MTR_4g070320 71.963 107 28 1 289 393 124 230 1.14e-45 162
MS.gene038511.t1 MTR_8g062240 50.588 170 64 3 240 395 77 240 1.76e-41 149
MS.gene038511.t1 MTR_3g498825 85.366 82 12 0 297 378 138 219 1.02e-40 149
MS.gene038511.t1 MTR_5g037250 63.115 122 43 2 284 405 91 210 1.42e-40 145
MS.gene038511.t1 MTR_8g099880 82.353 85 14 1 302 385 141 225 3.86e-40 147
MS.gene038511.t1 MTR_7g092510 73.034 89 24 0 303 391 170 258 2.42e-39 145
MS.gene038511.t1 MTR_1g059270 68.085 94 30 0 303 396 157 250 8.99e-39 141
MS.gene038511.t1 MTR_1g059270 72.093 86 24 0 303 388 157 242 1.47e-37 140
MS.gene038511.t1 MTR_6g084120 52.252 111 42 2 277 385 124 225 2.87e-26 107
MS.gene038511.t1 MTR_4g131160 64.935 77 26 1 295 371 185 260 1.12e-21 97.1
MS.gene038511.t1 MTR_4g131160 64.935 77 26 1 295 371 188 263 1.17e-21 97.1
MS.gene038511.t1 MTR_1g080890 68.182 66 20 1 306 371 193 257 3.90e-20 92.0
MS.gene038511.t1 MTR_4g033295 55.385 65 29 0 306 370 118 182 2.21e-15 75.1
MS.gene038511.t1 MTR_4g065870 58.462 65 27 0 306 370 355 419 2.77e-15 78.2
MS.gene038511.t1 MTR_4g033295 53.731 67 30 1 306 371 118 184 3.80e-15 73.9
MS.gene038511.t1 MTR_2g098310 50.704 71 35 0 306 376 332 402 5.49e-15 77.0
MS.gene038511.t1 MTR_4g065870 58.065 62 26 0 306 367 355 416 1.40e-14 75.9
MS.gene038511.t1 MTR_2g098310 56.250 64 28 0 306 369 332 395 2.10e-14 75.1
MS.gene038511.t1 MTR_1g052470 52.174 69 33 0 306 374 298 366 2.91e-14 74.7
MS.gene038511.t1 MTR_7g092540 50.725 69 34 0 306 374 243 311 3.31e-14 73.9
MS.gene038511.t1 MTR_1g084980 33.125 160 82 5 244 402 415 550 4.15e-14 75.1
MS.gene038511.t1 MTR_1g069155 54.688 64 28 1 308 371 319 381 4.48e-14 74.7
MS.gene038511.t1 MTR_1g070870 63.636 66 23 1 306 371 120 184 1.24e-13 71.6
MS.gene038511.t1 MTR_1g070870 63.636 66 23 1 306 371 123 187 1.42e-13 71.6
MS.gene038511.t1 MTR_7g092540 51.562 64 31 0 306 369 243 306 1.71e-13 71.6
MS.gene038511.t1 MTR_3g028520 50.769 65 32 0 306 370 322 386 8.58e-13 70.1
MS.gene038511.t1 MTR_3g027650 50.769 65 32 0 306 370 322 386 8.58e-13 70.1
MS.gene038511.t1 MTR_7g099540 51.562 64 30 1 308 371 254 316 1.74e-12 69.7
MS.gene038511.t1 MTR_1g019240 43.210 81 40 2 292 372 76 150 1.96e-12 67.8
MS.gene038511.t1 MTR_3g027650 51.613 62 30 0 306 367 322 383 4.48e-12 68.2
MS.gene038511.t1 MTR_8g036235 47.692 65 34 0 306 370 316 380 7.35e-12 67.4
MS.gene038511.t1 MTR_1g018090 50.769 65 31 1 306 370 274 337 1.90e-11 65.9
MS.gene038511.t1 MTR_3g449770 50.000 64 31 1 308 371 311 373 4.04e-11 65.5
MS.gene038511.t1 MTR_7g099540 48.438 64 32 1 308 371 254 316 4.22e-11 65.1
MS.gene038511.t1 MTR_5g017040 53.571 56 25 1 317 372 116 170 6.39e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038511.t1 AT1G68920 43.939 462 187 14 17 455 28 440 1.38e-96 300
MS.gene038511.t1 AT1G68920 43.939 462 188 14 17 455 28 441 1.45e-96 300
MS.gene038511.t1 AT1G68920 43.939 462 188 14 17 455 28 441 1.45e-96 300
MS.gene038511.t1 AT1G68920 43.939 462 188 14 17 455 28 441 1.45e-96 300
MS.gene038511.t1 AT1G26260 39.810 422 168 14 25 441 13 353 2.98e-70 228
MS.gene038511.t1 AT1G26260 39.810 422 168 14 25 441 13 353 2.98e-70 228
MS.gene038511.t1 AT1G26260 39.810 422 168 14 25 441 13 353 2.98e-70 228
MS.gene038511.t1 AT1G26260 39.810 422 168 14 25 441 13 353 2.98e-70 228
MS.gene038511.t1 AT1G26260 45.513 312 125 9 135 441 60 331 2.29e-66 218
MS.gene038511.t1 AT1G26260 52.137 234 85 4 208 441 96 302 6.07e-64 210
MS.gene038511.t1 AT1G10120 52.083 192 82 2 214 405 124 305 5.03e-54 185
MS.gene038511.t1 AT1G10120 52.083 192 82 2 214 405 124 305 5.03e-54 185
MS.gene038511.t1 AT3G07340 42.537 268 99 7 127 393 132 345 1.61e-48 172
MS.gene038511.t1 AT3G07340 42.537 268 99 7 127 393 132 345 2.55e-48 172
MS.gene038511.t1 AT5G48560 40.370 270 130 8 127 393 148 389 1.06e-45 166
MS.gene038511.t1 AT5G48560 40.370 270 130 8 127 393 148 389 2.30e-45 165
MS.gene038511.t1 AT4G34530 68.750 112 30 2 303 409 169 280 7.72e-45 160
MS.gene038511.t1 AT3G23690 45.022 231 70 9 263 438 109 337 1.79e-44 160
MS.gene038511.t1 AT5G50915 56.410 156 49 6 261 414 106 244 2.78e-42 151
MS.gene038511.t1 AT5G50915 56.410 156 49 6 261 414 106 244 2.78e-42 151
MS.gene038511.t1 AT2G18300 54.110 146 62 1 240 385 124 264 3.41e-42 153
MS.gene038511.t1 AT2G18300 54.110 146 62 1 240 385 124 264 3.73e-42 152
MS.gene038511.t1 AT5G50915 51.667 180 62 8 261 437 106 263 3.76e-42 151
MS.gene038511.t1 AT5G50915 51.667 180 62 8 261 437 106 263 3.76e-42 151
MS.gene038511.t1 AT2G18300 54.110 146 62 1 240 385 124 264 7.72e-42 152
MS.gene038511.t1 AT1G59640 65.455 110 37 1 286 395 117 225 5.69e-41 147
MS.gene038511.t1 AT1G59640 42.424 198 108 3 197 393 31 223 8.70e-41 149
MS.gene038511.t1 AT4G36540 51.974 152 64 2 269 411 101 252 2.14e-40 147
MS.gene038511.t1 AT4G36540 59.200 125 48 1 269 390 101 225 3.12e-39 144
MS.gene038511.t1 AT2G42300 67.778 90 29 0 303 392 182 271 1.57e-38 141
MS.gene038511.t1 AT3G57800 73.256 86 23 0 303 388 201 286 1.36e-37 141
MS.gene038511.t1 AT2G42300 68.539 89 28 0 303 391 182 270 3.06e-37 139
MS.gene038511.t1 AT5G62610 74.074 81 20 1 297 377 145 224 1.00e-35 134
MS.gene038511.t1 AT5G62610 74.074 81 20 1 297 377 145 224 1.00e-35 134
MS.gene038511.t1 AT1G73830 61.321 106 41 0 280 385 121 226 2.27e-34 130
MS.gene038511.t1 AT1G73830 61.321 106 41 0 280 385 121 226 2.43e-34 129
MS.gene038511.t1 AT1G18400 62.264 106 35 2 304 407 143 245 2.44e-34 129
MS.gene038511.t1 AT1G18400 74.390 82 21 0 304 385 143 224 4.09e-34 129
MS.gene038511.t1 AT1G25330 52.713 129 55 2 270 394 66 192 4.81e-34 127
MS.gene038511.t1 AT3G57800 47.368 133 23 1 303 388 201 333 5.64e-29 118
MS.gene038511.t1 AT2G24260 59.091 88 33 2 284 371 15 99 6.28e-23 97.8
MS.gene038511.t1 AT4G30980 56.122 98 37 2 274 371 103 194 1.80e-22 98.2
MS.gene038511.t1 AT4G30980 56.122 98 37 2 274 371 151 242 3.63e-22 98.2
MS.gene038511.t1 AT2G24260 59.091 88 33 2 284 371 118 202 4.04e-22 97.8
MS.gene038511.t1 AT5G58010 70.149 67 19 1 305 371 98 163 3.67e-21 94.0
MS.gene038511.t1 AT2G42300 81.395 43 8 0 303 345 182 224 4.67e-17 80.5
MS.gene038511.t1 AT2G42300 81.395 43 8 0 303 345 182 224 4.67e-17 80.5
MS.gene038511.t1 AT2G42300 81.395 43 8 0 303 345 182 224 5.52e-17 80.5
MS.gene038511.t1 AT2G20180 40.909 110 57 3 262 371 241 342 4.92e-16 80.9
MS.gene038511.t1 AT2G20180 40.909 110 57 3 262 371 241 342 4.92e-16 80.9
MS.gene038511.t1 AT2G20180 40.909 110 57 3 262 371 241 342 4.92e-16 80.9
MS.gene038511.t1 AT2G20180 40.909 110 57 3 262 371 241 342 4.92e-16 80.9
MS.gene038511.t1 AT2G20180 40.909 110 57 3 262 371 170 271 5.21e-16 80.1
MS.gene038511.t1 AT2G20180 40.909 110 57 3 262 371 170 271 5.21e-16 80.1
MS.gene038511.t1 AT2G20180 40.909 110 57 3 262 371 170 271 5.21e-16 80.1
MS.gene038511.t1 AT2G20180 40.187 107 56 3 262 368 241 339 7.78e-15 75.9
MS.gene038511.t1 AT4G28790 33.562 146 82 4 275 416 236 370 1.06e-14 76.3
MS.gene038511.t1 AT1G51140 56.250 64 28 0 306 369 304 367 1.99e-14 75.1
MS.gene038511.t1 AT4G28800 34.959 123 60 3 268 389 229 332 5.58e-14 74.3
MS.gene038511.t1 AT1G35460 52.308 65 31 0 306 370 181 245 5.72e-14 72.4
MS.gene038511.t1 AT4G09180 51.515 66 32 0 305 370 183 248 7.53e-14 72.0
MS.gene038511.t1 AT2G42280 51.562 64 31 0 306 369 279 342 9.98e-14 72.8
MS.gene038511.t1 AT1G09530 51.562 64 30 1 308 371 339 401 1.23e-13 73.6
MS.gene038511.t1 AT1G09530 51.562 64 30 1 308 371 339 401 1.23e-13 73.6
MS.gene038511.t1 AT1G09530 51.562 64 30 1 308 371 339 401 1.23e-13 73.6
MS.gene038511.t1 AT1G09530 51.562 64 30 1 308 371 339 401 1.23e-13 73.6
MS.gene038511.t1 AT1G09530 51.562 64 30 1 308 371 339 401 1.23e-13 73.6
MS.gene038511.t1 AT1G09530 51.562 64 30 1 308 371 339 401 1.23e-13 73.6
MS.gene038511.t1 AT2G42280 53.030 66 29 1 306 369 279 344 2.17e-13 72.0
MS.gene038511.t1 AT4G28815 56.897 58 24 1 309 366 71 127 2.22e-13 70.1
MS.gene038511.t1 AT4G28800 34.375 128 59 3 268 389 241 349 3.04e-13 72.0
MS.gene038511.t1 AT4G02590 62.121 66 24 1 306 371 83 147 4.03e-13 69.7
MS.gene038511.t1 AT4G02590 62.121 66 24 1 306 371 146 210 5.78e-13 70.1
MS.gene038511.t1 AT4G02590 62.121 66 24 1 306 371 146 210 5.78e-13 70.1
MS.gene038511.t1 AT4G28815 56.897 58 24 1 309 366 147 203 6.63e-13 69.7
MS.gene038511.t1 AT1G03040 62.121 66 24 1 306 371 139 203 6.66e-13 69.7
MS.gene038511.t1 AT1G03040 62.121 66 24 1 306 371 144 208 8.33e-13 69.3
MS.gene038511.t1 AT1G03040 62.121 66 24 1 306 371 144 208 1.54e-12 68.9
MS.gene038511.t1 AT4G28790 34.951 103 62 2 275 373 236 337 3.70e-12 67.8
MS.gene038511.t1 AT2G46970 34.513 113 68 2 304 411 216 327 5.16e-12 68.2
MS.gene038511.t1 AT2G46970 34.513 113 68 2 304 411 185 296 5.43e-12 67.8
MS.gene038511.t1 AT4G00050 49.275 69 34 1 302 370 101 168 5.80e-12 67.0
MS.gene038511.t1 AT1G27740 37.398 123 60 4 264 370 109 230 6.05e-12 66.2
MS.gene038511.t1 AT2G46970 34.513 113 68 2 304 411 194 305 6.18e-12 67.8
MS.gene038511.t1 AT4G00050 49.275 69 34 1 302 370 203 270 1.30e-11 66.6
MS.gene038511.t1 AT4G00050 49.275 69 34 1 302 370 203 270 1.54e-11 66.2
MS.gene038511.t1 AT2G43140 50.000 64 32 0 306 369 231 294 3.26e-11 64.7
MS.gene038511.t1 AT2G43140 50.000 64 32 0 306 369 134 197 3.52e-11 63.2
MS.gene038511.t1 AT4G33880 49.231 65 32 1 306 370 266 329 4.46e-11 64.7
MS.gene038511.t1 AT4G36930 50.820 61 29 1 312 372 197 256 7.04e-11 64.3

Find 128 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATATGGTCCTAATTTCT+TGG 0.241465 8.4:-36665579 MS.gene038511:CDS
TATGAATCCACCATTGAATT+AGG 0.277485 8.4:+36665596 None:intergenic
TGCAATGGATTAACCTGATT+TGG 0.278397 8.4:+36663066 None:intergenic
AGTGGAGAACCTTCTATTAA+AGG 0.279819 8.4:-36665053 MS.gene038511:CDS
GACTAGAACCGTACATCTTT+AGG 0.302334 8.4:+36663363 None:intergenic
GCTTCAACAACCAAGGCTTC+TGG 0.303821 8.4:-36664436 MS.gene038511:CDS
CACTTGCACAATCCAACATT+TGG 0.316306 8.4:+36665072 None:intergenic
CCTTCATCTTGAGACATTAC+AGG 0.318475 8.4:+36665161 None:intergenic
GCTCTCACAGTTGTCCTTTG+TGG 0.319104 8.4:+36664483 None:intergenic
TGCAAATTCATCTGTAGGTT+TGG 0.339897 8.4:-36665657 MS.gene038511:CDS
AGTCACTTCTTCGATCATTC+TGG 0.342191 8.4:+36665186 None:intergenic
ACCGGGTCCATCATCTGCTC+TGG 0.343461 8.4:-36663247 MS.gene038511:CDS
GGATTTAGACCTTTAATAGA+AGG 0.344206 8.4:+36665044 None:intergenic
GTAAGAAGGTCCAAGAAATT+AGG 0.353442 8.4:+36665569 None:intergenic
GAAAGGAGGGTCCTTTAGAT+TGG 0.355470 8.4:-36665703 MS.gene038511:CDS
TCAACCACAGTTGGAACCTT+TGG 0.357269 8.4:-36663106 MS.gene038511:CDS
TCTGATAAATTTGCCATGTT+AGG 0.358693 8.4:+36663147 None:intergenic
ATGTGGGATTCCTCAATCTA+TGG 0.359558 8.4:-36665267 MS.gene038511:CDS
TTCTGGGAAGAATGCCAAAC+AGG 0.361984 8.4:-36664419 MS.gene038511:CDS
ACGAGGGATACGTACATGTT+AGG 0.367434 8.4:-36664372 MS.gene038511:CDS
TCAGATTCTTCAACATCAAC+CGG 0.372154 8.4:-36663265 MS.gene038511:intron
TCTTACTAACTCTGAAAACT+TGG 0.374246 8.4:-36665552 MS.gene038511:CDS
AAGTGAGAAAGGATGGGTTT+GGG 0.386010 8.4:-36665496 MS.gene038511:CDS
TTCTTCATGTCCTAATTCAA+TGG 0.389007 8.4:-36665606 MS.gene038511:CDS
GGCATTCTTCCCAGAAGCCT+TGG 0.393219 8.4:+36664426 None:intergenic
ATCTGTAGGTTTGGTTTCCA+TGG 0.397148 8.4:-36665648 MS.gene038511:CDS
CTTCAACAACCAAGGCTTCT+GGG 0.404138 8.4:-36664435 MS.gene038511:CDS
TTCCATGGAAAATTCTATGA+TGG 0.411759 8.4:-36665633 MS.gene038511:CDS
GGTTGATATGAATGTGATAA+TGG 0.412278 8.4:+36663192 None:intergenic
CTTCTTCGATCATTCTGGAT+TGG 0.414720 8.4:+36665191 None:intergenic
GGGTTTGGGTTTGCAAGAGT+TGG 0.414735 8.4:-36665482 MS.gene038511:CDS
GTTGAGGAAATTTCAGTCCT+TGG 0.419505 8.4:+36663038 None:intergenic
CAGTCCTTGGCTGCTTGCAA+TGG 0.420935 8.4:+36663051 None:intergenic
GGAAATATCTCAGCCCCATT+TGG 0.426215 8.4:+36665386 None:intergenic
CCAAAGAAAAGGAAAAGAAA+TGG 0.434507 8.4:-36665023 MS.gene038511:CDS
CCGGGTCCATCATCTGCTCT+GGG 0.439623 8.4:-36663246 MS.gene038511:CDS
GAAGTGAGAAAGGATGGGTT+TGG 0.439721 8.4:-36665497 MS.gene038511:CDS
TTATTCTGTTTGTAGGTCAC+TGG 0.450051 8.4:-36664065 MS.gene038511:intron
TCTCGGTCTGTTGAGCATCT+TGG 0.450146 8.4:-36665227 MS.gene038511:CDS
GTTGGAATGGGTTGGGACCT+TGG 0.452583 8.4:-36665443 MS.gene038511:CDS
ACTTGCACAATCCAACATTT+GGG 0.456863 8.4:+36665073 None:intergenic
ACTTGGTAGCTCAAGAGTTC+CGG 0.459094 8.4:+36664510 None:intergenic
TTTCTTCAAGATCTTGTACC+TGG 0.462998 8.4:-36664186 MS.gene038511:CDS
AGGGTTTAAAGAGCCAAATC+AGG 0.463980 8.4:-36663079 MS.gene038511:CDS
CAAATTTATCAGATATGCTT+AGG 0.466891 8.4:-36663137 MS.gene038511:CDS
AATTCAATGGTGGATTCATA+TGG 0.475276 8.4:-36665593 MS.gene038511:CDS
CGAGGGATACGTACATGTTA+GGG 0.480619 8.4:-36664371 MS.gene038511:CDS
AGAAGCTTGAGACCCCTGTT+TGG 0.481555 8.4:+36664405 None:intergenic
AGCAATGAAGTGAGAAAGGA+TGG 0.482622 8.4:-36665503 MS.gene038511:CDS
AAGGTCTAAATCCAAAGAAA+AGG 0.482803 8.4:-36665034 MS.gene038511:CDS
CCACAGTTGGAACCTTTGGC+TGG 0.487866 8.4:-36663102 MS.gene038511:CDS
AGTTGGAACCTTTGGCTGGA+GGG 0.488222 8.4:-36663098 MS.gene038511:CDS
AAATGTACCTTGTTGCATCC+AGG 0.496384 8.4:+36664168 None:intergenic
CTCTACCTCTACATGTGTCT+CGG 0.501570 8.4:-36665244 MS.gene038511:CDS
TAGAACAGTTGGAATGGGTT+GGG 0.502266 8.4:-36665450 MS.gene038511:CDS
AGGAGGGTCCTTTAGATTGG+AGG 0.508576 8.4:-36665700 MS.gene038511:CDS
TCCATGGAAAATTCTATGAT+GGG 0.513525 8.4:-36665632 MS.gene038511:CDS
GAAAAGGAAAAGAAATGGAC+AGG 0.513621 8.4:-36665018 MS.gene038511:intron
TTGTCCTTTGTGGTTTCACT+TGG 0.513815 8.4:+36664493 None:intergenic
GGCTATTTGTTGCTTGACCA+CGG 0.515569 8.4:+36664344 None:intergenic
TTACTCTCTCTGCAAGGCTA+TGG 0.516396 8.4:+36664323 None:intergenic
CGATGATGGTTCCCAAATGT+TGG 0.518846 8.4:-36665084 MS.gene038511:CDS
CCTGTAATGTCTCAAGATGA+AGG 0.520207 8.4:-36665161 MS.gene038511:CDS
AGAAACCCCAGAGCAGATGA+TGG 0.522386 8.4:+36663240 None:intergenic
GATGAAGGGAAACAAGCTCT+TGG 0.524819 8.4:-36665146 MS.gene038511:CDS
CTCACAAACCTCCAATCTAA+AGG 0.533291 8.4:+36665692 None:intergenic
GCAGACTGTTCAACCACAGT+TGG 0.533598 8.4:-36663115 MS.gene038511:CDS
TCATAGCAATGAAGTGAGAA+AGG 0.537915 8.4:-36665507 MS.gene038511:CDS
CTGGATTTGTTGATGCTGCA+AGG 0.542019 8.4:-36665334 MS.gene038511:CDS
TGATGATAGAACAGTTGGAA+TGG 0.544564 8.4:-36665456 MS.gene038511:CDS
ATAGAACAGTTGGAATGGGT+TGG 0.546913 8.4:-36665451 MS.gene038511:CDS
GAAGGGAAACAAGCTCTTGG+AGG 0.547800 8.4:-36665143 MS.gene038511:CDS
TAATCCATTGCAAGCAGCCA+AGG 0.549245 8.4:-36663055 MS.gene038511:CDS
GTTGAGCATCTTGGTAGTGA+TGG 0.549328 8.4:-36665218 MS.gene038511:CDS
TCTTTAAACCCTCCAGCCAA+AGG 0.552371 8.4:+36663090 None:intergenic
AACCTTGCAAATTCATCTGT+AGG 0.552403 8.4:-36665662 MS.gene038511:CDS
GGTTGTGATGATAGAACAGT+TGG 0.552863 8.4:-36665461 MS.gene038511:CDS
GATGAATCAAGTGGCGATGA+TGG 0.553713 8.4:-36665098 MS.gene038511:CDS
CCCAGAGCAGATGATGGACC+CGG 0.555611 8.4:+36663246 None:intergenic
TTCATGTCCTAATTCAATGG+TGG 0.556761 8.4:-36665603 MS.gene038511:CDS
CAGTTGGAACCTTTGGCTGG+AGG 0.557432 8.4:-36663099 MS.gene038511:CDS
GATGATAGAACAGTTGGAAT+GGG 0.563426 8.4:-36665455 MS.gene038511:CDS
ACTAACTCTGAAAACTTGGG+TGG 0.566336 8.4:-36665548 MS.gene038511:CDS
GTAGTAGTTCTATGATGAAG+AGG 0.567662 8.4:-36665421 MS.gene038511:CDS
AGAGGTAGAGCCATAGATTG+AGG 0.574801 8.4:+36665257 None:intergenic
CTGTAATGTCTCAAGATGAA+GGG 0.576780 8.4:-36665160 MS.gene038511:CDS
CTTACTAACTCTGAAAACTT+GGG 0.579332 8.4:-36665551 MS.gene038511:CDS
AGAGTTGAATGAATCAGTCC+TGG 0.580047 8.4:+36663171 None:intergenic
CAAATGTTGGATTGTGCAAG+TGG 0.582909 8.4:-36665071 MS.gene038511:CDS
AGCTTCTGATCCGCCTAACG+AGG 0.590451 8.4:-36664389 MS.gene038511:CDS
TCTGGGAAGAATGCCAAACA+GGG 0.593622 8.4:-36664418 MS.gene038511:CDS
ACATGTACGTATCCCTCGTT+AGG 0.594600 8.4:+36664376 None:intergenic
AAGGGAAACAAGCTCTTGGA+GGG 0.596219 8.4:-36665142 MS.gene038511:CDS
TAGATATGATGAACTCATGT+GGG 0.599148 8.4:-36665283 MS.gene038511:CDS
TAGTAGTTCTATGATGAAGA+GGG 0.601347 8.4:-36665420 MS.gene038511:CDS
CATCATATCTACGAAACTCC+CGG 0.605426 8.4:+36665295 None:intergenic
TTTGAGGTAGATAGAAAGGA+GGG 0.606702 8.4:-36665716 MS.gene038511:CDS
CTGTTTGTAGGTCACTGGCA+AGG 0.607483 8.4:-36664060 MS.gene038511:intron
TCCATATTAAAATCCACATG+TGG 0.609814 8.4:+36663396 None:intergenic
GATAATGGAGGAAAAGCCAT+TGG 0.610652 8.4:+36663207 None:intergenic
TCATTCAACTCTACCTAACA+TGG 0.611728 8.4:-36663160 MS.gene038511:CDS
AACCTACAGATGAATTTGCA+AGG 0.617947 8.4:+36665660 None:intergenic
CAGATTCTTCAACATCAACC+GGG 0.618225 8.4:-36663264 MS.gene038511:CDS
TGGTAGCTCAAGAGTTCCGG+TGG 0.619141 8.4:+36664513 None:intergenic
CCAGCCAAAGGTTCCAACTG+TGG 0.623573 8.4:+36663102 None:intergenic
GGGTCTTGTAATGAAGCTGA+TGG 0.623907 8.4:-36665122 MS.gene038511:CDS
TGTACGTATCCCTCGTTAGG+CGG 0.628257 8.4:+36664379 None:intergenic
AACATCTTACTCTCTCTGCA+AGG 0.632535 8.4:+36664317 None:intergenic
TCATCATAGAACTACTACCA+AGG 0.632663 8.4:+36665426 None:intergenic
GTAGATATGATGAACTCATG+TGG 0.633019 8.4:-36665284 MS.gene038511:CDS
AGTTCTATGATGAAGAGGGA+TGG 0.633166 8.4:-36665416 MS.gene038511:CDS
GTCTCTTCAACAACAAGTTG+AGG 0.634721 8.4:-36664003 MS.gene038511:intron
GGTGATAGTGATAAAGCCAC+CGG 0.644324 8.4:-36664529 MS.gene038511:CDS
TGCAACAGTAAATCCACATG+TGG 0.646636 8.4:-36663409 MS.gene038511:CDS
GCTTCTGATCCGCCTAACGA+GGG 0.648015 8.4:-36664388 MS.gene038511:CDS
GCAAACAGCTTCAACAACCA+AGG 0.656445 8.4:-36664443 MS.gene038511:CDS
TGATATGAATGTGATAATGG+AGG 0.657822 8.4:+36663195 None:intergenic
CGGGTCCATCATCTGCTCTG+GGG 0.660359 8.4:-36663245 MS.gene038511:CDS
GTTTCTCAGAGAAATGCCAA+TGG 0.663274 8.4:-36663223 MS.gene038511:CDS
TCTTGTACCTGGATGCAACA+AGG 0.668293 8.4:-36664175 MS.gene038511:intron
ACAGACCGAGACACATGTAG+AGG 0.676355 8.4:+36665239 None:intergenic
GAAAATTGAGACAAACTCTG+AGG 0.678884 8.4:+36665365 None:intergenic
GCAATGAAGTGAGAAAGGAT+GGG 0.691342 8.4:-36665502 MS.gene038511:CDS
TTATCACATTCATATCAACC+AGG 0.710399 8.4:-36663189 MS.gene038511:CDS
GCTACCAAGTGAAACCACAA+AGG 0.714013 8.4:-36664497 MS.gene038511:CDS
CTGGGAAGAATGCCAAACAG+GGG 0.714387 8.4:-36664417 MS.gene038511:CDS
GCTGATGGAGATGAATCAAG+TGG 0.719164 8.4:-36665107 MS.gene038511:CDS
GTACATGTTAGGGCTCGCCG+TGG 0.768171 8.4:-36664361 MS.gene038511:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTATTTTATTTTCTGTT+AGG - chr8.4:36664230-36664249 MS.gene038511:intron 10.0%
!! ATGAGAAAAAAAAAATTGTT+TGG - chr8.4:36664507-36664526 MS.gene038511:CDS 15.0%
!! TAAATTAAAATAAACTCACA+TGG + chr8.4:36664216-36664235 None:intergenic 15.0%
!!! ATACAATAAATTGTTTTGTT+AGG - chr8.4:36665246-36665265 MS.gene038511:CDS 15.0%
!!! GACAATATTCAATTTTATAA+AGG + chr8.4:36665501-36665520 None:intergenic 15.0%
!!! TACAATAAATTGTTTTGTTA+GGG - chr8.4:36665247-36665266 MS.gene038511:CDS 15.0%
!! AAAAAATTGGTATTGTTTAG+CGG + chr8.4:36665001-36665020 None:intergenic 20.0%
!! AAATATGAATTATAAGCTGT+AGG - chr8.4:36663927-36663946 MS.gene038511:intron 20.0%
!! AAATTATTGCAATTTCAAAC+AGG + chr8.4:36665155-36665174 None:intergenic 20.0%
!! ATAGCAGAATTTGAAAAAAT+TGG + chr8.4:36665014-36665033 None:intergenic 20.0%
!! ATTATTTAGATTTCAACTGT+AGG - chr8.4:36664543-36664562 MS.gene038511:intron 20.0%
!! TAAATCCTCATATGAATATA+AGG + chr8.4:36664670-36664689 None:intergenic 20.0%
!!! ACAATAAATTGTTTTGTTAG+GGG - chr8.4:36665248-36665267 MS.gene038511:CDS 20.0%
!!! GATTTCTAGAAACATATATA+AGG + chr8.4:36665289-36665308 None:intergenic 20.0%
!!! TATTTTATTTTCTGTTAGGA+TGG - chr8.4:36664234-36664253 MS.gene038511:intron 20.0%
!!! TTTTAGTATAGTTGATACTA+TGG - chr8.4:36663809-36663828 MS.gene038511:intron 20.0%
! AAAAATATGGGAAAATGAGT+TGG + chr8.4:36664849-36664868 None:intergenic 25.0%
! AAAATTCATCACAGTGAATT+GGG - chr8.4:36664051-36664070 MS.gene038511:CDS 25.0%
! ATCTTTGTTACAATTGGTAA+AGG - chr8.4:36665210-36665229 MS.gene038511:CDS 25.0%
! CAAATTTATCAGATATGCTT+AGG - chr8.4:36665647-36665666 MS.gene038511:CDS 25.0%
! GTCATTAATCAAATGACAAA+AGG - chr8.4:36663977-36663996 MS.gene038511:intron 25.0%
! TTGGATGATTTAATAATCAG+TGG + chr8.4:36664830-36664849 None:intergenic 25.0%
!! AACTCATTTTCCCATATTTT+TGG - chr8.4:36664848-36664867 MS.gene038511:intron 25.0%
!! ACTATCTATTTTCTGAATTG+TGG - chr8.4:36663863-36663882 MS.gene038511:intron 25.0%
!! ATCATTGTTATTCTGTTTGT+AGG - chr8.4:36664712-36664731 MS.gene038511:intron 25.0%
!! TAACTGTTATTTGACAACAT+AGG - chr8.4:36665056-36665075 MS.gene038511:CDS 25.0%
!! TTGTCATTTGATTAATGACT+TGG + chr8.4:36663976-36663995 None:intergenic 25.0%
!!! AAATTTTGAGGTAGATAGAA+AGG - chr8.4:36663064-36663083 MS.gene038511:CDS 25.0%
!!! ATGTGGATTTTAATATGGAA+CGG - chr8.4:36665392-36665411 MS.gene038511:CDS 25.0%
!!! ATTGTAAGCTTTAAAATTGC+TGG + chr8.4:36665457-36665476 None:intergenic 25.0%
AAAATAAACTCACATGGACA+AGG + chr8.4:36664210-36664229 None:intergenic 30.0%
AAATAAACTCACATGGACAA+GGG + chr8.4:36664209-36664228 None:intergenic 30.0%
AAGGTCTAAATCCAAAGAAA+AGG - chr8.4:36663750-36663769 MS.gene038511:intron 30.0%
AATTGTAACAAAGATGACAC+CGG + chr8.4:36665205-36665224 None:intergenic 30.0%
ATACTATGGTTATCAATCTG+AGG - chr8.4:36663823-36663842 MS.gene038511:intron 30.0%
ATATAAGGAACAACTGACAA+TGG + chr8.4:36665274-36665293 None:intergenic 30.0%
ATATCCAAAATCGATACACT+AGG - chr8.4:36664091-36664110 MS.gene038511:intron 30.0%
ATGTTAATGAGAAACTCTAC+TGG + chr8.4:36665107-36665126 None:intergenic 30.0%
ATTGATAAAAACTGCCAAGA+GGG + chr8.4:36665349-36665368 None:intergenic 30.0%
CAAAATTCATCACAGTGAAT+TGG - chr8.4:36664050-36664069 MS.gene038511:CDS 30.0%
CACTACCTTATATTCATATG+AGG - chr8.4:36664662-36664681 MS.gene038511:intron 30.0%
CCAAAGAAAAGGAAAAGAAA+TGG - chr8.4:36663761-36663780 MS.gene038511:intron 30.0%
GAAGCAGAATCCAAAAATAT+GGG + chr8.4:36664861-36664880 None:intergenic 30.0%
GGATTTAGACCTTTAATAGA+AGG + chr8.4:36663743-36663762 None:intergenic 30.0%
GTGAATTGGGATTAAAAATG+AGG - chr8.4:36664064-36664083 MS.gene038511:intron 30.0%
TAGATATGATGAACTCATGT+GGG - chr8.4:36663501-36663520 MS.gene038511:intron 30.0%
TATCCAAAATCGATACACTA+GGG - chr8.4:36664092-36664111 MS.gene038511:intron 30.0%
TATGAATCCACCATTGAATT+AGG + chr8.4:36663191-36663210 None:intergenic 30.0%
TCCATATTAAAATCCACATG+TGG + chr8.4:36665391-36665410 None:intergenic 30.0%
TCCATGGAAAATTCTATGAT+GGG - chr8.4:36663152-36663171 MS.gene038511:CDS 30.0%
TCTGATAAATTTGCCATGTT+AGG + chr8.4:36665640-36665659 None:intergenic 30.0%
TGAAGCAGAATCCAAAAATA+TGG + chr8.4:36664862-36664881 None:intergenic 30.0%
TTATCACATTCATATCAACC+AGG - chr8.4:36665595-36665614 MS.gene038511:CDS 30.0%
TTCATATGGTCCTAATTTCT+TGG - chr8.4:36663205-36663224 MS.gene038511:CDS 30.0%
TTCCATGGAAAATTCTATGA+TGG - chr8.4:36663151-36663170 MS.gene038511:CDS 30.0%
TTCTTCATGTCCTAATTCAA+TGG - chr8.4:36663178-36663197 MS.gene038511:CDS 30.0%
! ACTAGAGCTACACTAATTTT+AGG - chr8.4:36664006-36664025 MS.gene038511:CDS 30.0%
! AGTTTTCAGAGTTAGTAAGA+AGG + chr8.4:36663232-36663251 None:intergenic 30.0%
! CAATTTTATAAAGGTCAGTC+AGG + chr8.4:36665492-36665511 None:intergenic 30.0%
! CCATTTCTTTTCCTTTTCTT+TGG + chr8.4:36663764-36663783 None:intergenic 30.0%
! CTTACTAACTCTGAAAACTT+GGG - chr8.4:36663233-36663252 MS.gene038511:CDS 30.0%
! GAGTGAAAGTGAAAATTTTG+AGG - chr8.4:36663052-36663071 MS.gene038511:CDS 30.0%
! GGTTGATATGAATGTGATAA+TGG + chr8.4:36665595-36665614 None:intergenic 30.0%
! GTACATTTAAAACTTGAGAC+TGG - chr8.4:36664631-36664650 MS.gene038511:intron 30.0%
! TAGTAGTTCTATGATGAAGA+GGG - chr8.4:36663364-36663383 MS.gene038511:intron 30.0%
! TCTTACTAACTCTGAAAACT+TGG - chr8.4:36663232-36663251 MS.gene038511:CDS 30.0%
!! AATTCAATGGTGGATTCATA+TGG - chr8.4:36663191-36663210 MS.gene038511:CDS 30.0%
!! TCCACATGTGGATTTTAATA+TGG - chr8.4:36665387-36665406 MS.gene038511:CDS 30.0%
!! TCTCAATTTTCAACTGATTC+TGG - chr8.4:36663431-36663450 MS.gene038511:intron 30.0%
!! TGATATGAATGTGATAATGG+AGG + chr8.4:36665592-36665611 None:intergenic 30.0%
AACCTACAGATGAATTTGCA+AGG + chr8.4:36663127-36663146 None:intergenic 35.0%
AACCTTGCAAATTCATCTGT+AGG - chr8.4:36663122-36663141 MS.gene038511:CDS 35.0%
AACTGTGAGAGCAGAAAAAA+GGG - chr8.4:36664312-36664331 MS.gene038511:intron 35.0%
AATAAACTCACATGGACAAG+GGG + chr8.4:36664208-36664227 None:intergenic 35.0%
ACTGCTGATGATTTAAATGC+CGG - chr8.4:36665183-36665202 MS.gene038511:CDS 35.0%
ACTTGCACAATCCAACATTT+GGG + chr8.4:36663714-36663733 None:intergenic 35.0%
AGTGGAGAACCTTCTATTAA+AGG - chr8.4:36663731-36663750 MS.gene038511:intron 35.0%
CATTGATAAAAACTGCCAAG+AGG + chr8.4:36665350-36665369 None:intergenic 35.0%
CTGAGGTTCAAATCATGAAT+TGG - chr8.4:36663840-36663859 MS.gene038511:intron 35.0%
CTGTAATGTCTCAAGATGAA+GGG - chr8.4:36663624-36663643 MS.gene038511:intron 35.0%
GAAAAGGAAAAGAAATGGAC+AGG - chr8.4:36663766-36663785 MS.gene038511:intron 35.0%
GAAAATTGAGACAAACTCTG+AGG + chr8.4:36663422-36663441 None:intergenic 35.0%
GATGATAGAACAGTTGGAAT+GGG - chr8.4:36663329-36663348 MS.gene038511:intron 35.0%
GTAAGAAGGTCCAAGAAATT+AGG + chr8.4:36663218-36663237 None:intergenic 35.0%
GTAGATATGATGAACTCATG+TGG - chr8.4:36663500-36663519 MS.gene038511:intron 35.0%
TCAGATTCTTCAACATCAAC+CGG - chr8.4:36665519-36665538 MS.gene038511:CDS 35.0%
TCATAGCAATGAAGTGAGAA+AGG - chr8.4:36663277-36663296 MS.gene038511:intron 35.0%
TCATCATAGAACTACTACCA+AGG + chr8.4:36663361-36663380 None:intergenic 35.0%
TCATTCAACTCTACCTAACA+TGG - chr8.4:36665624-36665643 MS.gene038511:CDS 35.0%
TGATGATAGAACAGTTGGAA+TGG - chr8.4:36663328-36663347 MS.gene038511:intron 35.0%
TGCAAATTCATCTGTAGGTT+TGG - chr8.4:36663127-36663146 MS.gene038511:CDS 35.0%
TTAGATTTCAACTGTAGGTG+AGG - chr8.4:36664548-36664567 MS.gene038511:intron 35.0%
TTATTCTGTTTGTAGGTCAC+TGG - chr8.4:36664719-36664738 MS.gene038511:intron 35.0%
TTCATGTCCTAATTCAATGG+TGG - chr8.4:36663181-36663200 MS.gene038511:CDS 35.0%
TTTCTTCAAGATCTTGTACC+TGG - chr8.4:36664598-36664617 MS.gene038511:intron 35.0%
! ACCCATCATAGAATTTTCCA+TGG + chr8.4:36663156-36663175 None:intergenic 35.0%
! GGTGGTTTTTGTGATGTTAA+TGG - chr8.4:36663254-36663273 MS.gene038511:CDS 35.0%
! GGTGTCATCTTTGTTACAAT+TGG - chr8.4:36665204-36665223 MS.gene038511:CDS 35.0%
! GTAGTAGTTCTATGATGAAG+AGG - chr8.4:36663363-36663382 MS.gene038511:intron 35.0%
! TTCAACAACAAGTTGAGGTA+TGG - chr8.4:36664786-36664805 MS.gene038511:intron 35.0%
! TTTGAGGTAGATAGAAAGGA+GGG - chr8.4:36663068-36663087 MS.gene038511:CDS 35.0%
!! TGCAATGGATTAACCTGATT+TGG + chr8.4:36665721-36665740 None:intergenic 35.0%
!!! AATCCCTAGTGTATCGATTT+TGG + chr8.4:36664098-36664117 None:intergenic 35.0%
!!! TTTTGAGGTAGATAGAAAGG+AGG - chr8.4:36663067-36663086 MS.gene038511:CDS 35.0%
AAATGTACCTTGTTGCATCC+AGG + chr8.4:36664619-36664638 None:intergenic 40.0%
AACATCTTACTCTCTCTGCA+AGG + chr8.4:36664470-36664489 None:intergenic 40.0%
AGAGTTGAATGAATCAGTCC+TGG + chr8.4:36665616-36665635 None:intergenic 40.0%
AGCAATGAAGTGAGAAAGGA+TGG - chr8.4:36663281-36663300 MS.gene038511:intron 40.0%
AGGGTTTAAAGAGCCAAATC+AGG - chr8.4:36665705-36665724 MS.gene038511:CDS 40.0%
AGTCACTTCTTCGATCATTC+TGG + chr8.4:36663601-36663620 None:intergenic 40.0%
AGTTCTATGATGAAGAGGGA+TGG - chr8.4:36663368-36663387 MS.gene038511:intron 40.0%
ATAAACTCACATGGACAAGG+GGG + chr8.4:36664207-36664226 None:intergenic 40.0%
ATAGAACAGTTGGAATGGGT+TGG - chr8.4:36663333-36663352 MS.gene038511:intron 40.0%
ATGTGGGATTCCTCAATCTA+TGG - chr8.4:36663517-36663536 MS.gene038511:intron 40.0%
CAAATGTTGGATTGTGCAAG+TGG - chr8.4:36663713-36663732 MS.gene038511:intron 40.0%
CAACTGTGAGAGCAGAAAAA+AGG - chr8.4:36664311-36664330 MS.gene038511:intron 40.0%
CACTTGCACAATCCAACATT+TGG + chr8.4:36663715-36663734 None:intergenic 40.0%
CAGATTCTTCAACATCAACC+GGG - chr8.4:36665520-36665539 MS.gene038511:CDS 40.0%
CATCATATCTACGAAACTCC+CGG + chr8.4:36663492-36663511 None:intergenic 40.0%
CCTGTAATGTCTCAAGATGA+AGG - chr8.4:36663623-36663642 MS.gene038511:intron 40.0%
CCTTCATCTTGAGACATTAC+AGG + chr8.4:36663626-36663645 None:intergenic 40.0%
CTCACAAACCTCCAATCTAA+AGG + chr8.4:36663095-36663114 None:intergenic 40.0%
CTTCTTCGATCATTCTGGAT+TGG + chr8.4:36663596-36663615 None:intergenic 40.0%
GACTAGAACCGTACATCTTT+AGG + chr8.4:36665424-36665443 None:intergenic 40.0%
GCAATGAAGTGAGAAAGGAT+GGG - chr8.4:36663282-36663301 MS.gene038511:intron 40.0%
GGTTGTGATGATAGAACAGT+TGG - chr8.4:36663323-36663342 MS.gene038511:intron 40.0%
GTCTCTTCAACAACAAGTTG+AGG - chr8.4:36664781-36664800 MS.gene038511:intron 40.0%
GTGAACCTCAATATAGTCGT+AGG - chr8.4:36663949-36663968 MS.gene038511:intron 40.0%
GTTTCTCAGAGAAATGCCAA+TGG - chr8.4:36665561-36665580 MS.gene038511:CDS 40.0%
TATAGCACCAATAGCGCAAA+TGG + chr8.4:36665038-36665057 None:intergenic 40.0%
TGCAACAGTAAATCCACATG+TGG - chr8.4:36665375-36665394 MS.gene038511:CDS 40.0%
TTGGACCTACGACTATATTG+AGG + chr8.4:36663957-36663976 None:intergenic 40.0%
TTGTCCTTTGTGGTTTCACT+TGG + chr8.4:36664294-36664313 None:intergenic 40.0%
TTGTTTAGCGGTACACTTAG+AGG + chr8.4:36664989-36665008 None:intergenic 40.0%
! AAGTGAGAAAGGATGGGTTT+GGG - chr8.4:36663288-36663307 MS.gene038511:intron 40.0%
! ACTAACTCTGAAAACTTGGG+TGG - chr8.4:36663236-36663255 MS.gene038511:CDS 40.0%
! AGGGATGGTGTTTTACCAAA+TGG - chr8.4:36663383-36663402 MS.gene038511:CDS 40.0%
! ATCTGTAGGTTTGGTTTCCA+TGG - chr8.4:36663136-36663155 MS.gene038511:CDS 40.0%
! GGATGGTGTTTTACCAAATG+GGG - chr8.4:36663385-36663404 MS.gene038511:CDS 40.0%
! GGGATGGTGTTTTACCAAAT+GGG - chr8.4:36663384-36663403 MS.gene038511:CDS 40.0%
! TAGAACAGTTGGAATGGGTT+GGG - chr8.4:36663334-36663353 MS.gene038511:intron 40.0%
! TGACACATTTTTCTCCCTCT+TGG - chr8.4:36665332-36665351 MS.gene038511:CDS 40.0%
!! GATAATGGAGGAAAAGCCAT+TGG + chr8.4:36665580-36665599 None:intergenic 40.0%
!!! AGGATGTCATGTTTTAGTGC+CGG - chr8.4:36663470-36663489 MS.gene038511:intron 40.0%
AAGGGAAACAAGCTCTTGGA+GGG - chr8.4:36663642-36663661 MS.gene038511:intron 45.0%
ACATGTACGTATCCCTCGTT+AGG + chr8.4:36664411-36664430 None:intergenic 45.0%
ACGAGGGATACGTACATGTT+AGG - chr8.4:36664412-36664431 MS.gene038511:CDS 45.0%
AGAGGTAGAGCCATAGATTG+AGG + chr8.4:36663530-36663549 None:intergenic 45.0%
CGAGGGATACGTACATGTTA+GGG - chr8.4:36664413-36664432 MS.gene038511:CDS 45.0%
CTCTACCTCTACATGTGTCT+CGG - chr8.4:36663540-36663559 MS.gene038511:intron 45.0%
CTTCAACAACCAAGGCTTCT+GGG - chr8.4:36664349-36664368 MS.gene038511:CDS 45.0%
GAAAGGAGGGTCCTTTAGAT+TGG - chr8.4:36663081-36663100 MS.gene038511:CDS 45.0%
GATGAAGGGAAACAAGCTCT+TGG - chr8.4:36663638-36663657 MS.gene038511:intron 45.0%
GATGAATCAAGTGGCGATGA+TGG - chr8.4:36663686-36663705 MS.gene038511:intron 45.0%
GCAAACAGCTTCAACAACCA+AGG - chr8.4:36664341-36664360 MS.gene038511:CDS 45.0%
GCTACCAAGTGAAACCACAA+AGG - chr8.4:36664287-36664306 MS.gene038511:intron 45.0%
GCTGATGGAGATGAATCAAG+TGG - chr8.4:36663677-36663696 MS.gene038511:intron 45.0%
GGAAATATCTCAGCCCCATT+TGG + chr8.4:36663401-36663420 None:intergenic 45.0%
GGCTGCTTCCTAAAGATGTA+CGG - chr8.4:36665413-36665432 MS.gene038511:CDS 45.0%
TAATCCATTGCAAGCAGCCA+AGG - chr8.4:36665729-36665748 MS.gene038511:CDS 45.0%
TCAACCACAGTTGGAACCTT+TGG - chr8.4:36665678-36665697 MS.gene038511:CDS 45.0%
TCTGGGAAGAATGCCAAACA+GGG - chr8.4:36664366-36664385 MS.gene038511:CDS 45.0%
TCTTGTACCTGGATGCAACA+AGG - chr8.4:36664609-36664628 MS.gene038511:intron 45.0%
TCTTTAAACCCTCCAGCCAA+AGG + chr8.4:36665697-36665716 None:intergenic 45.0%
TTACTCTCTCTGCAAGGCTA+TGG + chr8.4:36664464-36664483 None:intergenic 45.0%
! ACTTGGTAGCTCAAGAGTTC+CGG + chr8.4:36664277-36664296 None:intergenic 45.0%
! CGATGATGGTTCCCAAATGT+TGG - chr8.4:36663700-36663719 MS.gene038511:intron 45.0%
! GAAGTGAGAAAGGATGGGTT+TGG - chr8.4:36663287-36663306 MS.gene038511:intron 45.0%
! GGCTATTTGTTGCTTGACCA+CGG + chr8.4:36664443-36664462 None:intergenic 45.0%
! GGGTCTTGTAATGAAGCTGA+TGG - chr8.4:36663662-36663681 MS.gene038511:intron 45.0%
! GGTGATAGTGATAAAGCCAC+CGG - chr8.4:36664255-36664274 MS.gene038511:intron 45.0%
! TGCTATGCCATTTGCGCTAT+TGG - chr8.4:36665028-36665047 MS.gene038511:CDS 45.0%
! TTCTGGGAAGAATGCCAAAC+AGG - chr8.4:36664365-36664384 MS.gene038511:CDS 45.0%
!! CTGGATTTGTTGATGCTGCA+AGG - chr8.4:36663450-36663469 MS.gene038511:intron 45.0%
!! GTTGAGCATCTTGGTAGTGA+TGG - chr8.4:36663566-36663585 MS.gene038511:intron 45.0%
!!! GGATGTCATGTTTTAGTGCC+GGG - chr8.4:36663471-36663490 MS.gene038511:intron 45.0%
ACAAGTGTGCTATAGCGCTG+TGG + chr8.4:36664941-36664960 None:intergenic 50.0%
ACAGACCGAGACACATGTAG+AGG + chr8.4:36663548-36663567 None:intergenic 50.0%
AGAAACCCCAGAGCAGATGA+TGG + chr8.4:36665547-36665566 None:intergenic 50.0%
AGAAGCTTGAGACCCCTGTT+TGG + chr8.4:36664382-36664401 None:intergenic 50.0%
AGGAGGGTCCTTTAGATTGG+AGG - chr8.4:36663084-36663103 MS.gene038511:CDS 50.0%
AGTTGGAACCTTTGGCTGGA+GGG - chr8.4:36665686-36665705 MS.gene038511:CDS 50.0%
CTGGGAAGAATGCCAAACAG+GGG - chr8.4:36664367-36664386 MS.gene038511:CDS 50.0%
CTGTTTGTAGGTCACTGGCA+AGG - chr8.4:36664724-36664743 MS.gene038511:intron 50.0%
GAAGGGAAACAAGCTCTTGG+AGG - chr8.4:36663641-36663660 MS.gene038511:intron 50.0%
GCAGACTGTTCAACCACAGT+TGG - chr8.4:36665669-36665688 MS.gene038511:CDS 50.0%
GCTATAGCGCTGTGGAATAG+CGG + chr8.4:36664933-36664952 None:intergenic 50.0%
GCTCTCACAGTTGTCCTTTG+TGG + chr8.4:36664304-36664323 None:intergenic 50.0%
GCTTCAACAACCAAGGCTTC+TGG - chr8.4:36664348-36664367 MS.gene038511:CDS 50.0%
GGGGGAAACAGTATCAGTCA+TGG + chr8.4:36664189-36664208 None:intergenic 50.0%
TCTCGGTCTGTTGAGCATCT+TGG - chr8.4:36663557-36663576 MS.gene038511:intron 50.0%
TGTACGTATCCCTCGTTAGG+CGG + chr8.4:36664408-36664427 None:intergenic 50.0%
! GGGTTTGGGTTTGCAAGAGT+TGG - chr8.4:36663302-36663321 MS.gene038511:intron 50.0%
AGCTTCTGATCCGCCTAACG+AGG - chr8.4:36664395-36664414 MS.gene038511:CDS 55.0%
CAGTCCTTGGCTGCTTGCAA+TGG + chr8.4:36665736-36665755 None:intergenic 55.0%
CAGTTGGAACCTTTGGCTGG+AGG - chr8.4:36665685-36665704 MS.gene038511:CDS 55.0%
CCACAGTTGGAACCTTTGGC+TGG - chr8.4:36665682-36665701 MS.gene038511:CDS 55.0%
CCAGCCAAAGGTTCCAACTG+TGG + chr8.4:36665685-36665704 None:intergenic 55.0%
GCTTCTGATCCGCCTAACGA+GGG - chr8.4:36664396-36664415 MS.gene038511:CDS 55.0%
GGCATTCTTCCCAGAAGCCT+TGG + chr8.4:36664361-36664380 None:intergenic 55.0%
TGGTAGCTCAAGAGTTCCGG+TGG + chr8.4:36664274-36664293 None:intergenic 55.0%
!! GTTGGAATGGGTTGGGACCT+TGG - chr8.4:36663341-36663360 MS.gene038511:intron 55.0%
ACCGGGTCCATCATCTGCTC+TGG - chr8.4:36665537-36665556 MS.gene038511:CDS 60.0%
CCGGGTCCATCATCTGCTCT+GGG - chr8.4:36665538-36665557 MS.gene038511:CDS 60.0%
CGGGTCCATCATCTGCTCTG+GGG - chr8.4:36665539-36665558 MS.gene038511:CDS 60.0%
GTACATGTTAGGGCTCGCCG+TGG - chr8.4:36664423-36664442 MS.gene038511:CDS 60.0%
!! CCCAGAGCAGATGATGGACC+CGG + chr8.4:36665541-36665560 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 36663050 36665756 36663050 ID=MS.gene038511
chr8.4 mRNA 36663050 36665756 36663050 ID=MS.gene038511.t1;Parent=MS.gene038511
chr8.4 exon 36665019 36665756 36665019 ID=MS.gene038511.t1.exon1;Parent=MS.gene038511.t1
chr8.4 CDS 36665019 36665756 36665019 ID=cds.MS.gene038511.t1;Parent=MS.gene038511.t1
chr8.4 exon 36664327 36664554 36664327 ID=MS.gene038511.t1.exon2;Parent=MS.gene038511.t1
chr8.4 CDS 36664327 36664554 36664327 ID=cds.MS.gene038511.t1;Parent=MS.gene038511.t1
chr8.4 exon 36664176 36664241 36664176 ID=MS.gene038511.t1.exon3;Parent=MS.gene038511.t1
chr8.4 CDS 36664176 36664241 36664176 ID=cds.MS.gene038511.t1;Parent=MS.gene038511.t1
chr8.4 exon 36664004 36664072 36664004 ID=MS.gene038511.t1.exon4;Parent=MS.gene038511.t1
chr8.4 CDS 36664004 36664072 36664004 ID=cds.MS.gene038511.t1;Parent=MS.gene038511.t1
chr8.4 exon 36663377 36663448 36663377 ID=MS.gene038511.t1.exon5;Parent=MS.gene038511.t1
chr8.4 CDS 36663377 36663448 36663377 ID=cds.MS.gene038511.t1;Parent=MS.gene038511.t1
chr8.4 exon 36663050 36663283 36663050 ID=MS.gene038511.t1.exon6;Parent=MS.gene038511.t1
chr8.4 CDS 36663050 36663283 36663050 ID=cds.MS.gene038511.t1;Parent=MS.gene038511.t1
Gene Sequence

>MS.gene038511

ATGAGTGAAAGTGAAAATTTTGAGGTAGATAGAAAGGAGGGTCCTTTAGATTGGAGGTTTGTGAGTTGCAACAACCTTGCAAATTCATCTGTAGGTTTGGTTTCCATGGAAAATTCTATGATGGGTTCTTCTTCATGTCCTAATTCAATGGTGGATTCATATGGTCCTAATTTCTTGGACCTTCTTACTAACTCTGAAAACTTGGGTGGTTTTTGTGATGTTAATGGTCATAGCAATGAAGTGAGAAAGGATGGGTTTGGGTTTGCAAGAGTTGGTTGTGATGATAGAACAGTTGGAATGGGTTGGGACCTTGGTAGTAGTTCTATGATGAAGAGGGATGGTGTTTTACCAAATGGGGCTGAGATATTTCCTCAGAGTTTGTCTCAATTTTCAACTGATTCTGGATTTGTTGATGCTGCAAGGATGTCATGTTTTAGTGCCGGGAGTTTCGTAGATATGATGAACTCATGTGGGATTCCTCAATCTATGGCTCTACCTCTACATGTGTCTCGGTCTGTTGAGCATCTTGGTAGTGATGGAAGTCCAATCCAGAATGATCGAAGAAGTGACTGTCCTGTAATGTCTCAAGATGAAGGGAAACAAGCTCTTGGAGGGTCTTGTAATGAAGCTGATGGAGATGAATCAAGTGGCGATGATGGTTCCCAAATGTTGGATTGTGCAAGTGGAGAACCTTCTATTAAAGGTCTAAATCCAAAGAAAAGGAAAAGAAATGGACAGGTATATTTCTTTGAGTTGTATTTTTAGTATAGTTGATACTATGGTTATCAATCTGAGGTTCAAATCATGAATTGGACTATCTATTTTCTGAATTGTGGATTGAATCTTTTATTATGAATCGTAAGATGAATTACGAATAAAATATGAATTATAAGCTGTAGGTGAACCTCAATATAGTCGTAGGTCCAAGTCATTAATCAAATGACAAAAGGAAAGTGACTAGAGCTACACTAATTTTAGGTTGTGATTTATTAGAAACAATCAAAATTCATCACAGTGAATTGGGATTAAAAATGAGGTTTCATATCCAAAATCGATACACTAGGGATTTGTATTGATTGAGTTTAGTTTTGTATCGAATCAAGATACAACTCACATATATCGTAAGATATCGATAACCATGACTGATACTGTTTCCCCCTTGTCCATGTGAGTTTATTTTAATTTATTTTATTTTCTGTTAGGATGGTGATAGTGATAAAGCCACCGGAACTCTTGAGCTACCAAGTGAAACCACAAAGGACAACTGTGAGAGCAGAAAAAAGGGAAAGCAGCAAACAGCTTCAACAACCAAGGCTTCTGGGAAGAATGCCAAACAGGGGTCTCAAGCTTCTGATCCGCCTAACGAGGGATACGTACATGTTAGGGCTCGCCGTGGTCAAGCAACAAATAGCCATAGCCTTGCAGAGAGAGTAAGATGTTCTAACTAAATTTATGTGATGAGAAAAAAAAAATTGTTTGGATTTAGATTTCTAATTATTTAGATTTCAACTGTAGGTGAGGAGAGAAAAGATTAGTGAAAGAATGAAGTTTCTTCAAGATCTTGTACCTGGATGCAACAAGGTACATTTAAAACTTGAGACTGGAAGATTTTCACTACCTTATATTCATATGAGGATTTAGAGTGTTGTTTTCTTTTGATATATCATTGTTATTCTGTTTGTAGGTCACTGGCAAGGCAGTGATGCTAGATGAAATCATTAATTATGTACAGTCTCTTCAACAACAAGTTGAGGTATGGCTAAAAGCATATTTCTAACCACTGATTATTAAATCATCCAACTCATTTTCCCATATTTTTGGATTCTGCTTCAGTAAGTGTTGTCAATCATGAATCAGAGAAAATAACATTTGTTAAAATTCCGCTATTCCACAGCGCTATAGCACACTTGTATAGCTTCTATTTGATAACACTTGTCCTCTAAGTGTACCGCTAAACAATACCAATTTTTTCAAATTCTGCTATGCCATTTGCGCTATTGGTGCTATAACTGTTATTTGACAACATAGGCTTCTGTACGCTATCAGCATATGTTCCAGTAGAGTTTCTCATTAACATCGTTGACTGTTATAATGTTATTCTACCTGTTTGAAATTGCAATAATTTGAACGATCACTGCTGATGATTTAAATGCCGGTGTCATCTTTGTTACAATTGGTAAAGGATTACGAATAATTATACAATAAATTGTTTTGTTAGGGGCCATTGTCAGTTGTTCCTTATATATGTTTCTAGAAATCTATGCATCTTTTTCAGTTGAAGTTGACACATTTTTCTCCCTCTTGGCAGTTTTTATCAATGAAACTTGCAACAGTAAATCCACATGTGGATTTTAATATGGAACGGCTGCTTCCTAAAGATGTACGGTTCTAGTCAATCTGCATACCAGCAATTTTAAAGCTTACAATTAGCTATATATGCCTGACTGACCTTTATAAAATTGAATATTGTCAGATTCTTCAACATCAACCGGGTCCATCATCTGCTCTGGGGTTTCTCAGAGAAATGCCAATGGCTTTTCCTCCATTATCACATTCATATCAACCAGGACTGATTCATTCAACTCTACCTAACATGGCAAATTTATCAGATATGCTTAGGCAGACTGTTCAACCACAGTTGGAACCTTTGGCTGGAGGGTTTAAAGAGCCAAATCAGGTTAATCCATTGCAAGCAGCCAAGGACTGA
Protein sequence

>MS.gene038511.t1

MSESENFEVDRKEGPLDWRFVSCNNLANSSVGLVSMENSMMGSSSCPNSMVDSYGPNFLDLLTNSENLGGFCDVNGHSNEVRKDGFGFARVGCDDRTVGMGWDLGSSSMMKRDGVLPNGAEIFPQSLSQFSTDSGFVDAARMSCFSAGSFVDMMNSCGIPQSMALPLHVSRSVEHLGSDGSPIQNDRRSDCPVMSQDEGKQALGGSCNEADGDESSGDDGSQMLDCASGEPSIKGLNPKKRKRNGQDGDSDKATGTLELPSETTKDNCESRKKGKQQTASTTKASGKNAKQGSQASDPPNEGYVHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPHVDFNMERLLPKDILQHQPGPSSALGFLREMPMAFPPLSHSYQPGLIHSTLPNMANLSDMLRQTVQPQLEPLAGGFKEPNQVNPLQAAKD