AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene038831

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038831.t1 MTR_0011s0260 88.981 363 31 4 1 358 1 359 0.0 600
MS.gene038831.t1 MTR_0011s0210 88.462 364 33 4 1 359 1 360 0.0 594
MS.gene038831.t1 MTR_6g047570 71.547 362 74 5 1 359 1 336 9.50e-178 496
MS.gene038831.t1 MTR_4g067010 66.295 359 79 7 1 357 1 319 8.47e-152 431
MS.gene038831.t1 MTR_4g066460 64.800 375 70 9 1 359 1 329 3.01e-142 406
MS.gene038831.t1 MTR_4g066380 64.075 373 71 6 1 358 1 325 1.49e-139 400
MS.gene038831.t1 MTR_0246s0020 60.825 388 114 9 1 359 1 379 2.27e-138 399
MS.gene038831.t1 MTR_0246s0020 59.504 363 109 9 1 334 1 354 4.95e-123 359
MS.gene038831.t1 MTR_0250s0040 63.799 279 69 4 86 359 14 265 3.73e-116 338
MS.gene038831.t1 MTR_6g047550 70.039 257 57 4 1 251 1 243 4.86e-114 333
MS.gene038831.t1 MTR_4g098035 50.949 369 144 10 1 359 1 342 6.94e-106 314
MS.gene038831.t1 MTR_0246s0050 50.292 342 133 10 28 359 7 321 3.55e-95 286
MS.gene038831.t1 MTR_5g014560 41.127 355 134 11 17 358 15 307 9.82e-67 213
MS.gene038831.t1 MTR_5g014520 40.556 360 150 8 17 358 20 333 7.36e-64 206
MS.gene038831.t1 MTR_2g010450 44.828 203 105 3 162 357 151 353 1.13e-47 165
MS.gene038831.t1 MTR_4g009540 39.044 251 132 4 112 355 95 331 1.60e-46 161
MS.gene038831.t1 MTR_5g014600 34.444 360 184 10 10 350 4 330 3.91e-46 160
MS.gene038831.t1 MTR_4g097920 38.247 251 136 4 115 349 58 305 5.91e-44 154
MS.gene038831.t1 MTR_4g097920 38.247 251 136 4 115 349 73 320 8.68e-44 154
MS.gene038831.t1 MTR_4g097940 36.452 310 159 9 70 349 19 320 2.08e-43 153
MS.gene038831.t1 MTR_4g009110 38.554 249 136 4 114 355 112 350 5.11e-43 152
MS.gene038831.t1 MTR_2g104490 38.136 236 130 6 127 349 70 302 1.89e-42 150
MS.gene038831.t1 MTR_2g104550 37.344 241 141 4 121 358 82 315 1.24e-41 148
MS.gene038831.t1 MTR_4g092700 43.575 179 101 0 172 350 148 326 8.79e-41 146
MS.gene038831.t1 MTR_8g009020 32.468 308 165 7 84 355 23 323 1.08e-39 143
MS.gene038831.t1 MTR_4g097950 46.842 190 86 4 172 350 60 245 3.48e-39 140
MS.gene038831.t1 MTR_4g009540 37.826 230 122 4 112 334 95 310 3.32e-38 139
MS.gene038831.t1 MTR_5g014640 35.743 249 146 4 114 351 75 320 1.02e-37 138
MS.gene038831.t1 MTR_2g104490 37.557 221 122 6 127 334 70 287 6.62e-36 132
MS.gene038831.t1 MTR_2g104650 35.821 268 155 5 100 353 3 267 8.40e-36 132
MS.gene038831.t1 MTR_7g080780 39.487 195 108 2 161 355 132 316 1.40e-35 132
MS.gene038831.t1 MTR_7g080780 39.487 195 108 2 161 355 145 329 1.80e-35 132
MS.gene038831.t1 MTR_2g104560 33.482 224 145 3 134 356 6 226 3.02e-35 129
MS.gene038831.t1 MTR_8g069740 40.116 172 98 3 166 333 95 265 1.72e-33 125
MS.gene038831.t1 MTR_2g104530 40.000 170 96 3 183 351 106 270 5.59e-31 119
MS.gene038831.t1 MTR_8g009010 31.716 268 137 5 92 350 37 267 2.59e-29 115
MS.gene038831.t1 MTR_2g104500 37.629 194 107 5 170 355 85 272 8.81e-29 113
MS.gene038831.t1 MTR_5g014550 52.381 126 52 2 212 333 54 175 1.94e-28 110
MS.gene038831.t1 MTR_2g104590 35.135 185 95 4 170 350 56 219 8.83e-28 109
MS.gene038831.t1 MTR_4g009420 36.601 153 65 2 205 350 65 192 1.23e-22 94.4
MS.gene038831.t1 MTR_4g009510 37.126 167 77 5 193 350 53 200 2.00e-22 94.0
MS.gene038831.t1 MTR_7g451650 36.986 146 82 2 205 350 57 192 3.06e-22 93.2
MS.gene038831.t1 MTR_7g050350 35.714 140 80 2 211 350 1 130 3.19e-20 85.9
MS.gene038831.t1 MTR_7g451650 35.714 140 80 2 211 350 1 130 3.19e-20 85.9
MS.gene038831.t1 MTR_1g072320 33.103 145 83 3 182 315 470 611 2.42e-18 86.7
MS.gene038831.t1 MTR_5g058600 51.765 85 12 1 246 330 34 89 3.53e-17 77.0
MS.gene038831.t1 MTR_8g067280 33.939 165 95 3 168 318 445 609 4.38e-17 83.2
MS.gene038831.t1 MTR_8g024790 33.088 136 82 3 182 311 291 423 1.76e-15 77.8
MS.gene038831.t1 MTR_5g030430 32.402 179 79 6 168 318 476 640 3.35e-15 77.4
MS.gene038831.t1 MTR_7g451650 34.615 130 75 2 205 334 57 176 5.08e-15 73.2
MS.gene038831.t1 MTR_4g009420 34.043 141 61 2 205 338 65 180 6.31e-15 73.2
MS.gene038831.t1 MTR_8g064700 25.946 185 110 4 161 331 227 398 1.13e-13 72.0
MS.gene038831.t1 MTR_8g027495 28.736 174 109 3 182 352 458 619 3.29e-13 71.2
MS.gene038831.t1 MTR_7g117670 52.381 63 26 1 179 237 395 457 5.94e-13 70.5
MS.gene038831.t1 MTR_7g096350 43.333 90 42 2 155 235 319 408 8.87e-13 69.7
MS.gene038831.t1 MTR_3g030700 30.178 169 107 3 173 333 187 352 1.52e-12 68.6
MS.gene038831.t1 MTR_8g024770 34.188 117 67 3 182 291 279 392 1.91e-12 68.6
MS.gene038831.t1 MTR_1g112680 26.606 218 128 6 133 318 264 481 4.42e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene038831.t1 AT4G37850 43.814 194 106 2 166 357 136 328 3.02e-42 150
MS.gene038831.t1 AT4G37850 43.814 194 106 2 166 357 136 328 3.02e-42 150
MS.gene038831.t1 AT2G22760 34.364 291 152 7 86 350 14 291 1.90e-38 139
MS.gene038831.t1 AT2G22750 46.032 189 96 2 166 349 110 297 3.68e-37 136
MS.gene038831.t1 AT2G22750 46.032 189 96 2 166 349 138 325 4.14e-37 137
MS.gene038831.t1 AT2G22750 46.032 189 96 2 166 349 134 321 4.35e-37 136
MS.gene038831.t1 AT2G22750 46.032 189 95 3 166 349 138 324 5.96e-36 133
MS.gene038831.t1 AT2G22750 46.032 189 95 3 166 349 110 296 6.00e-36 133
MS.gene038831.t1 AT2G22760 33.942 274 143 6 86 334 14 274 6.00e-34 127
MS.gene038831.t1 AT2G22770 33.077 260 120 7 120 350 81 315 8.86e-32 122
MS.gene038831.t1 AT5G46760 32.394 213 111 8 151 338 388 592 1.79e-18 87.0
MS.gene038831.t1 AT4G17880 35.802 162 86 5 168 315 399 556 2.39e-17 84.0
MS.gene038831.t1 AT1G32640 32.704 159 95 4 168 318 435 589 2.56e-16 80.9
MS.gene038831.t1 AT1G01260 29.091 165 91 3 171 331 418 560 1.72e-14 75.1
MS.gene038831.t1 AT1G01260 29.091 165 91 3 171 331 418 560 1.72e-14 75.1
MS.gene038831.t1 AT1G01260 29.091 165 91 3 171 331 418 560 1.72e-14 75.1
MS.gene038831.t1 AT1G63650 29.825 171 93 5 182 330 405 570 2.29e-14 74.7
MS.gene038831.t1 AT1G63650 29.825 171 93 5 182 330 405 570 2.29e-14 74.7
MS.gene038831.t1 AT1G63650 29.825 171 93 5 182 330 405 570 2.29e-14 74.7
MS.gene038831.t1 AT2G46510 45.000 80 39 2 168 244 378 455 1.08e-13 72.8
MS.gene038831.t1 AT4G16430 46.154 78 39 1 168 242 303 380 1.95e-13 71.6
MS.gene038831.t1 AT4G09820 33.333 126 54 3 183 303 364 464 3.71e-13 70.9
MS.gene038831.t1 AT5G41315 28.495 186 100 6 172 330 437 616 1.67e-12 68.9
MS.gene038831.t1 AT5G41315 28.495 186 100 6 172 330 432 611 1.78e-12 68.9
MS.gene038831.t1 AT5G41315 28.495 186 100 6 172 330 440 619 1.98e-12 68.9
MS.gene038831.t1 AT4G00870 33.036 112 72 1 183 291 250 361 3.56e-11 64.7
MS.gene038831.t1 AT1G12860 28.889 180 107 6 183 349 268 439 5.84e-11 63.9

Find 47 sgRNAs with CRISPR-Local

Find 135 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACTAGTGGTAGGTGAATT+TGG 0.153287 2.1:-36386041 None:intergenic
CAAATCGAAGCAAAAGTATT+AGG 0.159030 2.1:+36386637 MS.gene038831:CDS
AACTAGTGGTAGGTGAATTT+GGG 0.226459 2.1:-36386040 None:intergenic
TCTTGTTCCCAACCTTAAAA+AGG 0.269180 2.1:+36386268 MS.gene038831:CDS
CAGCAGCTGGTTATCTGATT+TGG 0.298434 2.1:+36384478 MS.gene038831:CDS
CGATATTGATAAGACAATTA+TGG 0.305371 2.1:+36385920 MS.gene038831:CDS
TTCAGTGTCTCCAACTGAAT+TGG 0.327767 2.1:+36386118 MS.gene038831:CDS
CACCAGTATCAAGGAAATTC+AGG 0.328339 2.1:-36385761 None:intergenic
AAATCGAAGCAAAAGTATTA+GGG 0.346642 2.1:+36386638 MS.gene038831:CDS
CTGCAAGAGCAATGAAGCTT+TGG 0.357341 2.1:-36386244 None:intergenic
AAACAACAACGTTTAACTTC+GGG 0.382774 2.1:+36385834 MS.gene038831:CDS
AACCTGAATTTCCTTGATAC+TGG 0.413104 2.1:+36385759 MS.gene038831:CDS
AAAAGGTCTCGTGCTAATAA+TGG 0.413380 2.1:+36386176 MS.gene038831:CDS
CAAAAGATGGGATTTGAACT+TGG 0.429625 2.1:-36386010 None:intergenic
TAGGGAAATATATGTTGATT+CGG 0.431533 2.1:+36386656 MS.gene038831:CDS
TCATCATCGCTGCAGAGGTC+TGG 0.452669 2.1:-36386565 None:intergenic
TAAACAACAACGTTTAACTT+CGG 0.458515 2.1:+36385833 MS.gene038831:CDS
TGCAAGAGCAATGAAGCTTT+GGG 0.460124 2.1:-36386243 None:intergenic
GTCCCTTGTGTTCCTTACAT+TGG 0.460906 2.1:-36386681 None:intergenic
ATCGCTGCAGAGGTCTGGTT+TGG 0.461442 2.1:-36386560 None:intergenic
GGTCAAATCCAGAAAATTGT+TGG 0.469734 2.1:-36386064 None:intergenic
TGATATTACTATCATTGCTC+AGG 0.480526 2.1:+36386789 MS.gene038831:CDS
ATTTAGTGATGAAACAAAGT+TGG 0.485603 2.1:+36385884 MS.gene038831:CDS
GTCAAATCCAGAAAATTGTT+GGG 0.487558 2.1:-36386063 None:intergenic
GAGCGCAATGAAAGTGTTGT+TGG 0.490652 2.1:+36386604 MS.gene038831:CDS
GTTGATTCGGATCCAATGTA+AGG 0.498122 2.1:+36386669 MS.gene038831:CDS
CGAACACAATTTATTTGTTG+AGG 0.507704 2.1:+36385731 MS.gene038831:CDS
AATCTTCCACACCAGTATCA+AGG 0.520277 2.1:-36385770 None:intergenic
GAGCAATGATAGTAATATCA+AGG 0.524666 2.1:-36386786 None:intergenic
ACTAGTGGTAGGTGAATTTG+GGG 0.540705 2.1:-36386039 None:intergenic
TCAAGGATTGAATCTCCAAA+GGG 0.541373 2.1:-36386769 None:intergenic
AGAAAATTGTTGGGAACTAG+TGG 0.549969 2.1:-36386054 None:intergenic
ACGTATCATCAAGCAGCAGC+TGG 0.560203 2.1:+36384465 MS.gene038831:CDS
TAATGGTGAGGATCATATCA+TGG 0.568755 2.1:+36386193 MS.gene038831:CDS
ATCAAGGATTGAATCTCCAA+AGG 0.576697 2.1:-36386770 None:intergenic
AACAACAACGTTTAACTTCG+GGG 0.603388 2.1:+36385835 MS.gene038831:CDS
ATTGCGCTCATCAAATGATG+AGG 0.605739 2.1:-36386590 None:intergenic
AATTGTTGGGAACTAGTGGT+AGG 0.606056 2.1:-36386050 None:intergenic
GTCTCGTGCTAATAATGGTG+AGG 0.616632 2.1:+36386181 MS.gene038831:CDS
GAATTTCCTTGATACTGGTG+TGG 0.624759 2.1:+36385764 MS.gene038831:CDS
AGGAATCATCATCGCTGCAG+AGG 0.642820 2.1:-36386570 None:intergenic
GATCCAATGTAAGGAACACA+AGG 0.646884 2.1:+36386678 MS.gene038831:CDS
ACTTGTGAAGAACATACGCA+AGG 0.658289 2.1:+36387056 MS.gene038831:CDS
TAGTGGTAGGTGAATTTGGG+GGG 0.663891 2.1:-36386037 None:intergenic
GTTGCTGAGAGTTGTGCAAG+TGG 0.691092 2.1:-36385859 None:intergenic
ATCCAATGTAAGGAACACAA+GGG 0.769724 2.1:+36386679 MS.gene038831:CDS
CTAGTGGTAGGTGAATTTGG+GGG 0.803417 2.1:-36386038 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTATTTATTCAATTTAAAAA+GGG - chr2.1:36385195-36385214 None:intergenic 10.0%
!! TGTATTTATTCAATTTAAAA+AGG - chr2.1:36385196-36385215 None:intergenic 10.0%
!! TTAAATAATAAAAAATGTGA+AGG + chr2.1:36384858-36384877 MS.gene038831:intron 10.0%
!!! AATCTTAATTATTTTATAGT+TGG + chr2.1:36387005-36387024 MS.gene038831:intron 10.0%
!!! ATCTTAATTATTTTATAGTT+GGG + chr2.1:36387006-36387025 MS.gene038831:intron 10.0%
!! AATATATCAAGCAAATATAT+TGG - chr2.1:36386929-36386948 None:intergenic 15.0%
!! ATAAATACAACAACAAAAAA+TGG + chr2.1:36385207-36385226 MS.gene038831:intron 15.0%
!! ATTTAATATGTCATAAGAAA+TGG + chr2.1:36385259-36385278 MS.gene038831:intron 15.0%
!!! AAATTAAAGTATTTTATTCC+AGG + chr2.1:36386897-36386916 MS.gene038831:intron 15.0%
!!! ATAGTTAGACTTTTTTAAAA+TGG - chr2.1:36384960-36384979 None:intergenic 15.0%
!! TTGTGTAAAATTATGTTAGA+TGG + chr2.1:36386423-36386442 MS.gene038831:intron 20.0%
!!! AACATGTAAAAACATTCTTT+TGG - chr2.1:36385085-36385104 None:intergenic 20.0%
!!! ATTTTGTTGTCTTTGAATTT+TGG + chr2.1:36386950-36386969 MS.gene038831:intron 20.0%
!!! TTACTTATTGTACCTTTTTA+AGG - chr2.1:36386283-36386302 None:intergenic 20.0%
!!! TTCATTTTGTTTTGAGTTTA+AGG - chr2.1:36386093-36386112 None:intergenic 20.0%
!!! TTTTGTTGCAATTTAAAGAT+AGG - chr2.1:36386840-36386859 None:intergenic 20.0%
! AATTTGTCCATGACAATATT+TGG - chr2.1:36385035-36385054 None:intergenic 25.0%
! ACTTAGGGATATTATGTATT+AGG - chr2.1:36384673-36384692 None:intergenic 25.0%
! ATTTAGTGATGAAACAAAGT+TGG + chr2.1:36385884-36385903 MS.gene038831:CDS 25.0%
! ATTTGTCCATGACAATATTT+GGG - chr2.1:36385034-36385053 None:intergenic 25.0%
! CAAATATATTGGAAAAAACC+TGG - chr2.1:36386918-36386937 None:intergenic 25.0%
! CAATTATTAAGAATATCGAC+AGG + chr2.1:36384733-36384752 MS.gene038831:intron 25.0%
! CGATATTGATAAGACAATTA+TGG + chr2.1:36385920-36385939 MS.gene038831:CDS 25.0%
! CGTAGTTAATCACAAATAAA+TGG + chr2.1:36385648-36385667 MS.gene038831:intron 25.0%
! TGATACCAAAAGTTAAAAAG+TGG - chr2.1:36386874-36386893 None:intergenic 25.0%
! TGCACATGTTAATAAATTCA+AGG - chr2.1:36385592-36385611 None:intergenic 25.0%
! TTATTATTGAAGTGTGTTAG+AGG + chr2.1:36385400-36385419 MS.gene038831:intron 25.0%
! TTATTTAAGAGATATTGCCA+GGG - chr2.1:36385443-36385462 None:intergenic 25.0%
! TTGCAATTTAAAGATAGGTA+GGG - chr2.1:36386835-36386854 None:intergenic 25.0%
!! TAAACAACAACGTTTAACTT+CGG + chr2.1:36385833-36385852 MS.gene038831:CDS 25.0%
!! TAGGGAAATATATGTTGATT+CGG + chr2.1:36386656-36386675 MS.gene038831:CDS 25.0%
!! TGAAGAAAGTTTTTGTGTAA+AGG - chr2.1:36385985-36386004 None:intergenic 25.0%
!!! AAATCGAAGCAAAAGTATTA+GGG + chr2.1:36386638-36386657 MS.gene038831:CDS 25.0%
!!! ACGGTAAACAATTCATTTTT+CGG + chr2.1:36384831-36384850 MS.gene038831:intron 25.0%
!!! AGACTTTTTTAAAATGGATC+CGG - chr2.1:36384954-36384973 None:intergenic 25.0%
!!! ATCTATACTGTTTTAGAGAT+AGG - chr2.1:36385289-36385308 None:intergenic 25.0%
!!! ATTATTTTATAGTTGGGTGA+AGG + chr2.1:36387012-36387031 MS.gene038831:intron 25.0%
!!! ATTTTGTTTTGAGTTTAAGG+TGG - chr2.1:36386090-36386109 None:intergenic 25.0%
!!! GGGACTTTTAGTTAAAATTA+TGG + chr2.1:36386699-36386718 MS.gene038831:CDS 25.0%
!!! GTTGTTGTTTATTTTGTTCT+TGG - chr2.1:36385824-36385843 None:intergenic 25.0%
!!! GTTTTCTTCTGTACTTTTTA+CGG + chr2.1:36384812-36384831 MS.gene038831:intron 25.0%
!!! TATCTGATTTGGTAAGAAAA+TGG + chr2.1:36384489-36384508 MS.gene038831:intron 25.0%
!!! TATTGTACCTTTTTAAGGTT+GGG - chr2.1:36386278-36386297 None:intergenic 25.0%
!!! TCTATACTGTTTTAGAGATA+GGG - chr2.1:36385288-36385307 None:intergenic 25.0%
!!! TCTCACTAGTGTTTTTTTAT+AGG - chr2.1:36385534-36385553 None:intergenic 25.0%
!!! TTAATTTGTTGACCTATTAC+CGG + chr2.1:36384932-36384951 MS.gene038831:intron 25.0%
!!! TTATTGTACCTTTTTAAGGT+TGG - chr2.1:36386279-36386298 None:intergenic 25.0%
!!! TTCTTATTTTCCAATTCAGT+TGG - chr2.1:36386131-36386150 None:intergenic 25.0%
!!! TTTCACCACTTTTTAACTTT+TGG + chr2.1:36386866-36386885 MS.gene038831:intron 25.0%
!!! TTTTGTTTTGAGTTTAAGGT+GGG - chr2.1:36386089-36386108 None:intergenic 25.0%
AAATATGAGATGGTCAACTT+AGG - chr2.1:36384689-36384708 None:intergenic 30.0%
AACCTAGCGAAAATTAAAGA+TGG + chr2.1:36385230-36385249 MS.gene038831:intron 30.0%
AAGTTGACCATCTCATATTT+AGG + chr2.1:36384689-36384708 MS.gene038831:intron 30.0%
AATAAAAACAGAGTCACATG+TGG + chr2.1:36386531-36386550 MS.gene038831:CDS 30.0%
AATATGAGATGGTCAACTTA+GGG - chr2.1:36384688-36384707 None:intergenic 30.0%
AATGTATAAAAAAGTGACCC+TGG + chr2.1:36385423-36385442 MS.gene038831:intron 30.0%
ATGAGAACCTAAATATGAGA+TGG - chr2.1:36384699-36384718 None:intergenic 30.0%
CAAAAACCTCAAAAAGCAAA+AGG + chr2.1:36386159-36386178 MS.gene038831:CDS 30.0%
GAGCAATGATAGTAATATCA+AGG - chr2.1:36386789-36386808 None:intergenic 30.0%
GTCAAATCCAGAAAATTGTT+GGG - chr2.1:36386066-36386085 None:intergenic 30.0%
GTTATAAACGTACTACGAAA+TGG - chr2.1:36384601-36384620 None:intergenic 30.0%
GTTATGCTTCTGTATATGAA+CGG + chr2.1:36385145-36385164 MS.gene038831:intron 30.0%
GTTATTTAAGAGATATTGCC+AGG - chr2.1:36385444-36385463 None:intergenic 30.0%
GTTGCAATTTAAAGATAGGT+AGG - chr2.1:36386836-36386855 None:intergenic 30.0%
TGACATGTTAGTGTTATACT+TGG - chr2.1:36384903-36384922 None:intergenic 30.0%
TGATATTACTATCATTGCTC+AGG + chr2.1:36386789-36386808 MS.gene038831:CDS 30.0%
TTTGTCCATGACAATATTTG+GGG - chr2.1:36385033-36385052 None:intergenic 30.0%
! AAACAACAACGTTTAACTTC+GGG + chr2.1:36385834-36385853 MS.gene038831:CDS 30.0%
! CGAACACAATTTATTTGTTG+AGG + chr2.1:36385731-36385750 MS.gene038831:CDS 30.0%
! CTCAACTTGAAATATTTTGC+AGG - chr2.1:36384554-36384573 None:intergenic 30.0%
! TTTAAAATGGATCCGGTAAT+AGG - chr2.1:36384947-36384966 None:intergenic 30.0%
! TTTTTCCCCAAATATTGTCA+TGG + chr2.1:36385025-36385044 MS.gene038831:intron 30.0%
!! CAAATCGAAGCAAAAGTATT+AGG + chr2.1:36386637-36386656 MS.gene038831:CDS 30.0%
!! TTCCATCTTTAATTTTCGCT+AGG - chr2.1:36385235-36385254 None:intergenic 30.0%
!!! TTTGTTTTGAGTTTAAGGTG+GGG - chr2.1:36386088-36386107 None:intergenic 30.0%
AAAAGGTCTCGTGCTAATAA+TGG + chr2.1:36386176-36386195 MS.gene038831:CDS 35.0%
AACCTGAATTTCCTTGATAC+TGG + chr2.1:36385759-36385778 MS.gene038831:CDS 35.0%
AACTAGTGGTAGGTGAATTT+GGG - chr2.1:36386043-36386062 None:intergenic 35.0%
AGAAAATTGTTGGGAACTAG+TGG - chr2.1:36386057-36386076 None:intergenic 35.0%
AGAGCTAGTTAATAGCTATG+AGG - chr2.1:36386317-36386336 None:intergenic 35.0%
ATCAAGGATTGAATCTCCAA+AGG - chr2.1:36386773-36386792 None:intergenic 35.0%
ATCCAATGTAAGGAACACAA+GGG + chr2.1:36386679-36386698 MS.gene038831:CDS 35.0%
CAAAAGATGGGATTTGAACT+TGG - chr2.1:36386013-36386032 None:intergenic 35.0%
GAGCTAGTTAATAGCTATGA+GGG - chr2.1:36386316-36386335 None:intergenic 35.0%
GGGATATTATGTATTAGGAG+AGG - chr2.1:36384668-36384687 None:intergenic 35.0%
GGTCAAATCCAGAAAATTGT+TGG - chr2.1:36386067-36386086 None:intergenic 35.0%
TAATGGTGAGGATCATATCA+TGG + chr2.1:36386193-36386212 MS.gene038831:CDS 35.0%
TCAAGGATTGAATCTCCAAA+GGG - chr2.1:36386772-36386791 None:intergenic 35.0%
TCTTGTTCCCAACCTTAAAA+AGG + chr2.1:36386268-36386287 MS.gene038831:CDS 35.0%
! AACAACAACGTTTAACTTCG+GGG + chr2.1:36385835-36385854 MS.gene038831:CDS 35.0%
! AATAGCAGTGTTTTACCCTT+TGG + chr2.1:36386754-36386773 MS.gene038831:CDS 35.0%
! ACTAGTTCCCAACAATTTTC+TGG + chr2.1:36386056-36386075 MS.gene038831:CDS 35.0%
! GCAGGAAATTTCAAGTGTTA+AGG - chr2.1:36384536-36384555 None:intergenic 35.0%
!! GAAAGAGCTTAAAAAGCGTT+TGG + chr2.1:36386483-36386502 MS.gene038831:CDS 35.0%
!!! TTAACAGTTCCTTTTTTCCC+AGG + chr2.1:36385701-36385720 MS.gene038831:intron 35.0%
AATCTTCCACACCAGTATCA+AGG - chr2.1:36385773-36385792 None:intergenic 40.0%
AATTGTGTTCGTCCATTTCC+TGG - chr2.1:36385722-36385741 None:intergenic 40.0%
AATTGTTGGGAACTAGTGGT+AGG - chr2.1:36386053-36386072 None:intergenic 40.0%
ACTAGTGGTAGGTGAATTTG+GGG - chr2.1:36386042-36386061 None:intergenic 40.0%
ACTATTGACCAAGCCATTGA+TGG + chr2.1:36385310-36385329 MS.gene038831:intron 40.0%
ACTTGTGAAGAACATACGCA+AGG + chr2.1:36387056-36387075 MS.gene038831:CDS 40.0%
ATTGCGCTCATCAAATGATG+AGG - chr2.1:36386593-36386612 None:intergenic 40.0%
ATTGTGTTCGTCCATTTCCT+GGG - chr2.1:36385721-36385740 None:intergenic 40.0%
CACCAGTATCAAGGAAATTC+AGG - chr2.1:36385764-36385783 None:intergenic 40.0%
CATATTACACTGCTCACTGA+TGG + chr2.1:36386399-36386418 MS.gene038831:intron 40.0%
GAACTAGTGGTAGGTGAATT+TGG - chr2.1:36386044-36386063 None:intergenic 40.0%
GAATTTCCTTGATACTGGTG+TGG + chr2.1:36385764-36385783 MS.gene038831:CDS 40.0%
GATCCAATGTAAGGAACACA+AGG + chr2.1:36386678-36386697 MS.gene038831:CDS 40.0%
TGCAAGAGCAATGAAGCTTT+GGG - chr2.1:36386246-36386265 None:intergenic 40.0%
TTCAGTGTCTCCAACTGAAT+TGG + chr2.1:36386118-36386137 MS.gene038831:CDS 40.0%
! GGACAAGTTTTCTGTACTAG+TGG + chr2.1:36386444-36386463 MS.gene038831:CDS 40.0%
!! GTTGATTCGGATCCAATGTA+AGG + chr2.1:36386669-36386688 MS.gene038831:CDS 40.0%
!!! ACGAGACCTTTTGCTTTTTG+AGG - chr2.1:36386168-36386187 None:intergenic 40.0%
!!! GTTCCTTTTTTCCCAGGAAA+TGG + chr2.1:36385707-36385726 MS.gene038831:intron 40.0%
CAGCAGCTGGTTATCTGATT+TGG + chr2.1:36384478-36384497 MS.gene038831:CDS 45.0%
CGTCCATTTCCTGGGAAAAA+AGG - chr2.1:36385713-36385732 None:intergenic 45.0%
CTAGTGGTAGGTGAATTTGG+GGG - chr2.1:36386041-36386060 None:intergenic 45.0%
CTGCAAGAGCAATGAAGCTT+TGG - chr2.1:36386247-36386266 None:intergenic 45.0%
GTCCCTTGTGTTCCTTACAT+TGG - chr2.1:36386684-36386703 None:intergenic 45.0%
GTCTCGTGCTAATAATGGTG+AGG + chr2.1:36386181-36386200 MS.gene038831:CDS 45.0%
TAGTGGTAGGTGAATTTGGG+GGG - chr2.1:36386040-36386059 None:intergenic 45.0%
TCTGTCTCATCTCAAAGCTC+TGG - chr2.1:36385339-36385358 None:intergenic 45.0%
! AAAGCTCTGGTGTCCATCAA+TGG - chr2.1:36385326-36385345 None:intergenic 45.0%
!! AGGAGAGGCATTTGTATGTG+AGG - chr2.1:36384653-36384672 None:intergenic 45.0%
!! GAGCGCAATGAAAGTGTTGT+TGG + chr2.1:36386604-36386623 MS.gene038831:CDS 45.0%
!! TAATATGAAAAAAAAAAAAT+AGG - chr2.1:36386386-36386405 None:intergenic 5.0%
ACGTATCATCAAGCAGCAGC+TGG + chr2.1:36384465-36384484 MS.gene038831:CDS 50.0%
AGGAATCATCATCGCTGCAG+AGG - chr2.1:36386573-36386592 None:intergenic 50.0%
GAGATGAGACAGATCGATCG+CGG + chr2.1:36385346-36385365 MS.gene038831:intron 50.0%
GTTGCTGAGAGTTGTGCAAG+TGG - chr2.1:36385862-36385881 None:intergenic 50.0%
TCTGGTGTCCATCAATGGCT+TGG - chr2.1:36385321-36385340 None:intergenic 50.0%
TTGGGGGGCTGTCAAAAGAT+GGG - chr2.1:36386025-36386044 None:intergenic 50.0%
TTTGGGGGGCTGTCAAAAGA+TGG - chr2.1:36386026-36386045 None:intergenic 50.0%
ATCGCTGCAGAGGTCTGGTT+TGG - chr2.1:36386563-36386582 None:intergenic 55.0%
TCATCATCGCTGCAGAGGTC+TGG - chr2.1:36386568-36386587 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 36384437 36387104 36384437 ID=MS.gene038831
chr2.1 mRNA 36384437 36387104 36384437 ID=MS.gene038831.t1;Parent=MS.gene038831
chr2.1 exon 36384437 36384499 36384437 ID=MS.gene038831.t1.exon1;Parent=MS.gene038831.t1
chr2.1 CDS 36384437 36384499 36384437 ID=cds.MS.gene038831.t1;Parent=MS.gene038831.t1
chr2.1 exon 36385723 36386289 36385723 ID=MS.gene038831.t1.exon2;Parent=MS.gene038831.t1
chr2.1 CDS 36385723 36386289 36385723 ID=cds.MS.gene038831.t1;Parent=MS.gene038831.t1
chr2.1 exon 36386442 36386810 36386442 ID=MS.gene038831.t1.exon3;Parent=MS.gene038831.t1
chr2.1 CDS 36386442 36386810 36386442 ID=cds.MS.gene038831.t1;Parent=MS.gene038831.t1
chr2.1 exon 36387024 36387104 36387024 ID=MS.gene038831.t1.exon4;Parent=MS.gene038831.t1
chr2.1 CDS 36387024 36387104 36387024 ID=cds.MS.gene038831.t1;Parent=MS.gene038831.t1
Gene Sequence

>MS.gene038831

ATGGAGGAAATCAACAACACAGCTATGAACGTATCATCAAGCAGCAGCTGGTTATCTGATTTGGTAAGAAAATGGTTGATTATATATAAATTAATTCCTTAACACTTGAAATTTCCTGCAAAATATTTCAAGTTGAGTGTCATCATTCATTTAATAATAAACCATTTCGTAGTACGTTTATAACAAAATTTAAAGAGAAACTATAATTAATGACCTCACATACAAATGCCTCTCCTAATACATAATATCCCTAAGTTGACCATCTCATATTTAGGTTCTCATGTACAATATTTCTACAATTATTAAGAATATCGACAGGTAATGATTCAAATATTGATTTAAAGATATAATTTTAATAGAATCTAATATGTGAATGTTTTCTTCTGTACTTTTTACGGTAAACAATTCATTTTTCGGTTTATTAAATAATAAAAAATGTGAAGGTCATACTCTCTAAGACACTCCAAGTATAACACTAACATGTCATCAATCTTTTTAATTTGTTGACCTATTACCGGATCCATTTTAAAAAAGTCTAACTATTTATTTTATGATAAAAAAGAAAAAAGACTTTTAGATCTAAGTTGTTTTTTCCCCAAATATTGTCATGGACAAATTAAGTTAAATATCTTTTGTAAACAATCACCAAAAGAATGTTTTTACATGTTTTTCAATTACAAAACAAAAGAGAATGTCATTGTAGATGATGTTATGCTTCTGTATATGAACGGAAAAAACTTATGCAAAAGATAATGCCCTTTTTAAATTGAATAAATACAACAACAAAAAATGGAACCTAGCGAAAATTAAAGATGGAAATAAATTTAATATGTCATAAGAAATGGAATCCCTATCTCTAAAACAGTATAGATCACTATTGACCAAGCCATTGATGGACACCAGAGCTTTGAGATGAGACAGATCGATCGCGGCAAAAAAAAATTGATTATGTGATGTTGCTGATTATTATTGAAGTGTGTTAGAGGAATGTATAAAAAAGTGACCCTGGCAATATCTCTTAAATAACTGATGTATCTGATCTTTAATATAGACTAAATATATCAGTTATTAATGAATCTAAGAAGTGAATATTTCCTATAAAAAAACACTAGTGAGAGTATATAAATTTTGAGAGATATAATTTAATAACAACCTTGAATTTATTAACATGTGCAAATTTGCACATGAGAGACAAACTTGCTCTTAATTGTCGTAGTTAATCACAAATAAATGGTTGATTATAAATTAATTCTTTAATATATACTTAACAGTTCCTTTTTTCCCAGGAAATGGACGAACACAATTTATTTGTTGAGGAATGCAACCTGAATTTCCTTGATACTGGTGTGGAAGATTTTCTTTCACATGACATAGCTAATGTCTTCCAAGAACAAAATAAACAACAACGTTTAACTTCGGGGTCCACTTGCACAACTCTCAGCAACGCATTTAGTGATGAAACAAAGTTGGATTGTTTTGACTTCGATATTGATAAGACAATTATGGAGATGAAAACTATTGATCATAGTGACAAAATCAATGAAACCTTTACACAAAAACTTTCTTCATCTTTCCAAGTTCAAATCCCATCTTTTGACAGCCCCCCAAATTCACCTACCACTAGTTCCCAACAATTTTCTGGATTTGACCCCACCTTAAACTCAAAACAAAATGAAACAGTTTCAGTGTCTCCAACTGAATTGGAAAATAAGAATCATTCAACAAAAACCTCAAAAAGCAAAAGGTCTCGTGCTAATAATGGTGAGGATCATATCATGGCAGAGAGAAAGCGAAGAGAGAAACTCACCCAAAGCTTCATTGCTCTTGCAGCTCTTGTTCCCAACCTTAAAAAGGTACAATAAGTAATTTTTATTTACCCTCATAGCTATTAACTAGCTCTTTTAATTGATCTTTAAAATTAATAATTAAATGAACTTATTTTTTTTCCTATTTTTTTTTTTTCATATTACACTGCTCACTGATGGTTTGTGTAAAATTATGTTAGATGGACAAGTTTTCTGTACTAGTGGACACTATCAAATACATGAAAGAGCTTAAAAAGCGTTTGGAAGTTTTAGAAGAACAAAACAAGAGAATAAAAACAGAGTCACATGTGGTTCTGACCAAACCAGACCTCTGCAGCGATGATGATTCCTCATCATTTGATGAGCGCAATGAAAGTGTTGTTGGTTCAATATTTCAAATCGAAGCAAAAGTATTAGGGAAATATATGTTGATTCGGATCCAATGTAAGGAACACAAGGGACTTTTAGTTAAAATTATGGTCGAGATTCAAAGATTTCAACTATTTGTTGTCAATAGCAGTGTTTTACCCTTTGGAGATTCAATCCTTGATATTACTATCATTGCTCAGGTAGTGAATGTCTCTCTACAACCCTACCTATCTTTAAATTGCAACAAAAAACTTTTTTCACCACTTTTTAACTTTTGGTATCATCAAAATTAAAGTATTTTATTCCAGGTTTTTTCCAATATATTTGCTTGATATATTCATTTTGTTGTCTTTGAATTTTGGTGTTTTTATTATTTATCATTGTATTTAATATTAATCTTAATTATTTTATAGTTGGGTGAAGGCTATAACTTGAGCATAAAAGAACTTGTGAAGAACATACGCAAGGAAGCATTGAAGTTTATGTCATCATAA
Protein sequence

>MS.gene038831.t1

MEEINNTAMNVSSSSSWLSDLEMDEHNLFVEECNLNFLDTGVEDFLSHDIANVFQEQNKQQRLTSGSTCTTLSNAFSDETKLDCFDFDIDKTIMEMKTIDHSDKINETFTQKLSSSFQVQIPSFDSPPNSPTTSSQQFSGFDPTLNSKQNETVSVSPTELENKNHSTKTSKSKRSRANNGEDHIMAERKRREKLTQSFIALAALVPNLKKMDKFSVLVDTIKYMKELKKRLEVLEEQNKRIKTESHVVLTKPDLCSDDDSSSFDERNESVVGSIFQIEAKVLGKYMLIRIQCKEHKGLLVKIMVEIQRFQLFVVNSSVLPFGDSILDITIIAQLGEGYNLSIKELVKNIRKEALKFMSS