AlfalfaGEDB | MS.gene03893

M. sativa cultivar XinJiangDaYe / MS.gene03893

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03893.t1	XP_003599324.1	83.7	343	56	0	1	343	458	800	6.30E-168	600.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03893.t1	P17801	47.9	303	150	4	40	338	516	814	2.6e-77	290.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03893.t1	G7J0Q7	83.7	343	56	0	1	343	458	800	4.6e-168	600.1

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03893.t1	MTR_3g031640	83.673	343	56	0	1	343	458	800	0.0	615
MS.gene03893.t1	MTR_3g031610	80.758	343	64	2	1	343	456	796	0.0	570
MS.gene03893.t1	MTR_3g031600	79.009	343	71	1	1	343	458	799	0.0	563
MS.gene03893.t1	MTR_3g031490	77.976	336	73	1	1	336	453	787	0.0	546
MS.gene03893.t1	MTR_3g031480	76.232	345	78	3	1	342	461	804	0.0	535
MS.gene03893.t1	MTR_3g031510	78.659	328	68	2	16	343	26	351	0.0	528
MS.gene03893.t1	MTR_3g031470	75.872	344	78	4	1	342	469	809	0.0	524
MS.gene03893.t1	MTR_3g031500	73.824	340	87	2	1	339	368	706	2.56e-180	516
MS.gene03893.t1	MTR_3g031580	73.824	340	87	2	1	339	447	785	8.36e-179	515
MS.gene03893.t1	MTR_7g058550	66.082	342	111	4	1	342	456	792	9.24e-159	464

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03893.t1	AT1G34300	43.077	325	164	7	21	337	446	757	2.89e-80	261
MS.gene03893.t1	AT4G00340	43.624	298	151	5	48	337	451	739	5.89e-78	254
MS.gene03893.t1	AT4G00340	43.189	301	154	5	45	337	469	760	6.81e-78	254
MS.gene03893.t1	AT2G19130	43.750	304	138	7	48	337	483	767	2.02e-77	253
MS.gene03893.t1	AT5G35370	42.193	301	158	6	46	333	503	800	1.07e-72	241
MS.gene03893.t1	AT4G32300	40.193	311	166	6	34	337	468	765	1.41e-71	238
MS.gene03893.t1	AT5G24080	37.805	328	183	6	18	337	361	675	7.19e-69	229
MS.gene03893.t1	AT5G24080	37.805	328	183	6	18	337	361	675	7.19e-69	229
MS.gene03893.t1	AT5G24080	37.805	328	183	6	18	337	488	802	2.69e-68	229
MS.gene03893.t1	AT3G26940	37.950	361	182	9	10	337	1	352	5.42e-68	219

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Find 86 sgRNAs with CRISPR-Local

Find 94 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGTATAAAATAGCACT+AGG	0.624101	3.2:-56324268	MS.gene03893:CDS
AAAGGTTATAGTGAAGAGAT+TGG	0.456149	3.2:-56324547	MS.gene03893:CDS
AAGAAGGAAAGTATCAGAAG+TGG	0.450363	3.2:-56323879	MS.gene03893:CDS
AAGAATCATGCTCATGACTT+TGG	0.409097	3.2:+56323711	None:intergenic
AAGCAAGACTACGTTCTTGC+AGG	0.416378	3.2:-56324619	MS.gene03893:CDS
AAGGTTGATGTTTATAGCTA+TGG	0.386928	3.2:-56324013	MS.gene03893:CDS
AAGTATCAGAAGTGGGATGT+TGG	0.479266	3.2:-56323871	MS.gene03893:CDS
AATCCAAAATCCGCTACCTT+GGG	0.507379	3.2:+56324145	None:intergenic
ACAAATAGTTGACCCTGCAT+TGG	0.498939	3.2:-56323843	MS.gene03893:CDS
ACATCAACCTTGGAAGTGAT+TGG	0.451120	3.2:+56324025	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGTTATAGTGAAGAGAT+TGG	-	chr3.2:56323880-56323899	MS.gene03893:CDS	30.0%
AGATTATGACTTTGCTCAAT+TGG	-	chr3.2:56324611-56324630	MS.gene03893:CDS	30.0%
ATAATGAGAGGTTAGTAACA+TGG	-	chr3.2:56324514-56324533	MS.gene03893:CDS	30.0%
ATAGCTATAAACATCAACCT+TGG	+	chr3.2:56324415-56324434	None:intergenic	30.0%
CATAATCTAATTCCAATGCA+GGG	+	chr3.2:56324599-56324618	None:intergenic	30.0%
CATGAACTTAATTGACATGA+TGG	-	chr3.2:56324038-56324057	MS.gene03893:CDS	30.0%
GAACTAAAACTAGCAACAAA+AGG	-	chr3.2:56323862-56323881	MS.gene03893:CDS	30.0%
GTCATCAAATGCACTTAATT+GGG	-	chr3.2:56324134-56324153	MS.gene03893:CDS	30.0%
TAATGAGAGGTTAGTAACAT+GGG	-	chr3.2:56324515-56324534	MS.gene03893:CDS	30.0%
TATAGTGAAGAGATTGGAAA+GGG	-	chr3.2:56323886-56323905	MS.gene03893:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	56323709	56324740	56323709	ID=MS.gene03893
chr3.2	mRNA	56323709	56324740	56323709	ID=MS.gene03893.t1;Parent=MS.gene03893
chr3.2	exon	56323709	56324740	56323709	ID=MS.gene03893.t1.exon1;Parent=MS.gene03893.t1
chr3.2	CDS	56323709	56324740	56323709	ID=cds.MS.gene03893.t1;Parent=MS.gene03893.t1

Gene Sequence

>MS.gene03893

ATGCTTTGGTTTGCGACTAGCTTGGGGGTGATTGAGGCATTGTGCTTCTTTATGGTAGGATGCTTCTTATTTAAGAATAAGAAACACTCTATCAGAGACAAGCAAGACTACGTTCTTGCAGGAGCAACAGGATTTCGAAAATTCACTTACTCTGAACTAAAACTAGCAACAAAAGGTTATAGTGAAGAGATTGGAAAGGGTGCTGGAGGAACTGTGTATAAGGGAATTTTATCTAATAATCGAGTTGTGGCTATAAAGCGATTGCATCAAGTGAATCAAGGGGAGAATGAGTTTCTGGCTGAAGTGACCCTCATTGGGAGGCTCAACCACATGAACTTAATTGACATGATGGGGTATTGTGCCGAGGGAAAACACAGATTGTTGGTTTTTGAGTACATGGAAAAGGGTTCTTTAGCTGAGAATTTGTCATCAAATGCACTTAATTGGGGCAAAAGGTATAAAATAGCACTAGGAACTGCAAAAGCTCTTGCCTATTTACATGAAGAATGTTTGGAGTGGATTTTGCATTGTGACATAAAACCCCAAAACATACTAATTGACTCTGATTACCAACCCAAGGTAGCGGATTTTGGATTGTCTAAGCTTCTACAAAGGAACACTCTTGATAATTCAAGTTTTTCAAGGATGAGAGGAACAAGAGGTTATATGGCACCTGAATGGGTTTTCAACTTGCCAATCACTTCCAAGGTTGATGTTTATAGCTATGGAATTGTAGTGTTGGAGATGATTACTGGAAAGAGTCCAACAACATGTATCCAAATCACAGATGATGGAATAGTGTCACATAATGAGAGGTTAGTAACATGGGTGAGAGAGAAAAGAAGGAAAGTATCAGAAGTGGGATGTTGGGTTGAACAAATAGTTGACCCTGCATTGGAATTAGATTATGACTTTGCTCAATTGGAGACTTTGGCAGTGGTGGCTTTGGCTTGTGTAGAGGAAGAGAAAAATGTGAGACCCACCATGAGTCAAGTTGTTGAGAGGCTCCAAAGTCATGAGCATGATTCTTGA

Protein sequence

>MS.gene03893.t1

MLWFATSLGVIEALCFFMVGCFLFKNKKHSIRDKQDYVLAGATGFRKFTYSELKLATKGYSEEIGKGAGGTVYKGILSNNRVVAIKRLHQVNQGENEFLAEVTLIGRLNHMNLIDMMGYCAEGKHRLLVFEYMEKGSLAENLSSNALNWGKRYKIALGTAKALAYLHEECLEWILHCDIKPQNILIDSDYQPKVADFGLSKLLQRNTLDNSSFSRMRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMITGKSPTTCIQITDDGIVSHNERLVTWVREKRRKVSEVGCWVEQIVDPALELDYDFAQLETLAVVALACVEEEKNVRPTMSQVVERLQSHEHDS