AlfalfaGEDB | MS.gene03895

M. sativa cultivar XinJiangDaYe / MS.gene03895

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008037 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0022414 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048544 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF00954.23 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03895.t1	XP_003599321.1	88.3	761	62	2	1	735	36	795	0.00E+00	1390.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03895.t1	P17801	37.0	779	424	19	2	729	50	812	1.2e-132	475.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03895.t1	G7J0Q4	88.3	761	62	2	1	735	36	795	0.0e+00	1390.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MS.gene03895.t1	MTR_3g031610	88.305	761	62	2	1	735	36	795	1396
MS.gene03895.t1	MTR_3g031600	82.962	763	102	2	1	735	36	798	1301
MS.gene03895.t1	MTR_3g031640	76.178	764	153	2	1	735	36	799	1220
MS.gene03895.t1	MTR_3g031490	69.605	760	192	6	1	729	36	787	1070
MS.gene03895.t1	MTR_3g031480	69.492	767	201	6	1	735	39	804	1069
MS.gene03895.t1	MTR_3g031580	66.010	762	214	7	1	732	39	785	997
MS.gene03895.t1	MTR_3g031470	65.633	774	225	7	1	735	38	809	976
MS.gene03895.t1	MTR_3g031500	64.730	723	208	8	40	732	1	706	907
MS.gene03895.t1	MTR_7g058550	54.641	765	301	10	1	735	44	792	803
MS.gene03895.t1	MTR_7g058530	54.581	764	303	8	1	735	45	793	792

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03895.t1	AT5G24080	30.330	788	460	25	1	730	46	802	1.07e-97	322
MS.gene03895.t1	AT4G00340	29.065	781	449	22	1	730	34	760	1.34e-86	291
MS.gene03895.t1	AT4G00340	29.140	779	430	22	1	730	34	739	4.19e-85	286
MS.gene03895.t1	AT5G24080	29.815	701	409	21	87	730	1	675	5.17e-84	282
MS.gene03895.t1	AT5G24080	29.815	701	409	21	87	730	1	675	5.17e-84	282
MS.gene03895.t1	AT1G34300	30.194	775	434	31	2	730	44	757	4.83e-81	276
MS.gene03895.t1	AT5G35370	29.975	814	418	38	1	726	51	800	3.98e-77	266
MS.gene03895.t1	AT1G11303	27.273	792	454	25	6	735	48	779	1.29e-70	247
MS.gene03895.t1	AT1G11300	27.006	785	465	25	6	735	48	779	2.66e-66	235
MS.gene03895.t1	AT1G11300	26.641	777	463	26	6	735	48	764	1.77e-63	227

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Find 159 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTTCCTACCAGTTCT+TGG	0.273398	3.1:+49591181	None:intergenic
AAATTATGACATGGTTAAAT+TGG	0.196556	3.1:-49589807	MS.gene03895:CDS
AACAATCGTGTTCATGAGTT+TGG	0.268229	3.1:+49589702	None:intergenic
AACATTGAAATAGGATGCGT+CGG	0.598363	3.1:+49591774	None:intergenic
AACCAAAGCATGAAGTTCAT+TGG	0.464025	3.1:+49590719	None:intergenic
AACCATTTGTGTTGCGTTCT+CGG	0.294308	3.1:+49591683	None:intergenic
AACCCAAAATCCGCTACCTT+GGG	0.496813	3.1:+49590134	None:intergenic
AACTTTGCCAATCACTTCCA+AGG	0.555774	3.1:-49590020	MS.gene03895:intron
AAGAGGTATAAAATTGCTCT+CGG	0.567686	3.1:-49590257	MS.gene03895:CDS
AAGATTGATCCTTGAAAATT+TGG	0.138884	3.1:+49590872	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGGTAGATGTTTATAGCTA+TGG	-	chr3.1:49591666-49591685	MS.gene03895:CDS	30.0%
ACATAAATTTGATCGGTATG+TGG	-	chr3.1:49591288-49591307	MS.gene03895:CDS	30.0%
ACATACCGATCAAATTTATG+TGG	+	chr3.1:49591289-49591308	None:intergenic	30.0%
AGTAAATACTGGAAACTTGA+GGG	+	chr3.1:49590176-49590195	None:intergenic	30.0%
ATAAATTTGATCGGTATGTG+GGG	-	chr3.1:49591290-49591309	MS.gene03895:CDS	30.0%
ATAGCTATAAACATCTACCT+TGG	+	chr3.1:49591667-49591686	None:intergenic	30.0%
ATCAGAAATGAAATCTTTGG+TGG	-	chr3.1:49591809-49591828	MS.gene03895:CDS	30.0%
ATTGGGATCAAATTATGACA+TGG	-	chr3.1:49591851-49591870	MS.gene03895:CDS	30.0%
CAACAACCTTTCAAAATACA+TGG	-	chr3.1:49590429-49590448	MS.gene03895:CDS	30.0%
CACTTTGTTAGAGATAATCA+AGG	-	chr3.1:49591044-49591063	MS.gene03895:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.1	gene	49589700	49591989	49589700	ID=MS.gene03895
chr3.1	mRNA	49589700	49591989	49589700	ID=MS.gene03895.t1;Parent=MS.gene03895
chr3.1	exon	49590021	49591989	49590021	ID=MS.gene03895.t1.exon1;Parent=MS.gene03895.t1
chr3.1	CDS	49590021	49591989	49590021	ID=cds.MS.gene03895.t1;Parent=MS.gene03895.t1
chr3.1	exon	49589700	49589941	49589700	ID=MS.gene03895.t1.exon2;Parent=MS.gene03895.t1
chr3.1	CDS	49589700	49589941	49589700	ID=cds.MS.gene03895.t1;Parent=MS.gene03895.t1

Gene Sequence

>MS.gene03895

ATGTCACCTAAAGGCACATTCACTGCAGGCTTTTATCCCGTAGGTGAAAATGCTTATTCCTTTGCTATATGGTTCACCCAAAAACATAAAAGTCTCAACAACGCTACCGTTGTTTGGATGGCAAATCGTGACCAACCAGTTAACGGGAAACGCTCAACACTTTCCCTTCTCAAAACTGGAAACGTCGTCTTAACCGACGCATCCTATTTCAATGTTTGGTCCACAAACACAAACTCATCCAAACCACTTGAGTTGTTTCTATACGACACAGGAAACCTCGTTCTCCGAGAACGCAACACAAATGGTTTCATTTTGTGGCAAAGCTTTGATTTCCCAACAGATACCCTCCTTCCTGATCAAAGTTTCACAAGGCACATGACTCTTGTTTCCTCCAAAAGCGACAACATATATTCATCAGGGTTCTATAAGCTTTTTTTCGACAATGATAATCTTTTAAGTCTTCTCTATGATGGCCCTCAAGTTTCCAGTATTTACTGGCCATATTCTTGGCTCGTGAGCTGGGATGCTGGTAGATCTTCATATAATAGTAGCAGGGTTGCAAAACTAGACATTTGGGGGAGCTTTAGATCTTCCGATGATTTTACTTTAAATACAAGTGATTATGGGACAGTGCTCCTACGAAGATTGACACTAGACTTTGATGGTAATGTTCGTGTTTATAGCCGAAAACACGGACAAGAGAAGTGGTCAATTTCAGGACAATTCCACCAACAACCTTTCAAAATACATGGAATTTGTGGACCTAATAGCTTTTGCATTAACAATCCAAGAACTGGTAGGAAATGTTTGTGTCTTCCTGGTTATAGGAGGATCCATAATCAAGATTGGTCACAAGGGTGCAAACCAAGCTTCCGACTTTCATGCAACAATAGAACCGAGTTAGAGACTCGTTTCCAACGCTTATCACATGTTCAGTTTTATGGATATGATGATGGCTTCCAAGCAAATTACACTTATAAACAATGTAAGCATTTATGCATGAGAACGTGCCAATGCATAGCCTTCCAGTATCGTTTGGACAAGGGTGTATTTTATTGCTATCCTAAGTCACAATTACAAAATGGATTCAGTTCACCAAATTTTCAAGGATCAATCTTCTTGCGATTGCCAAAAAGAAAACATGTTTATTTCCATGAGAATGTTGTAAAAAATGGTATCTTGGATTGTTCTAGAAATAATGGAGTAAAACAACTAAGAAGATCATATGTTGAAGGCGAAGAAAATGGACCAATGAACTTCATGCTTTGGTTTACTTCTGGCTTAGGGGTGATCGAGGCCTTGTGCTTCTTTATGATCTGGTGGTTGTTATTTAAGAATAAGAAGCACTTTGTTAGAGATAATCAAGGCTACGTTCTTGCAGGAGCAACAGGATTTCGAAAATTCACTTACTCTGAACTAAAACAAGCAACAAAATGTTTTAGTCAAGAGATTGGAAAGGGTGCTGGAGGAACTGTGTATAAGGGTTTATTATCTGATAATAGAGTTGTGGCTATAAAGAGACTGCATGAAGCAAACAAAGGAGAGAGTGAATTTCTTGCTGAAGTTAGCGTCATTGGAAGGCTTAACCACATAAATTTGATCGGTATGTGGGGGTATTGTGCAGAGGGAAAACACAGATTGTTAGTTTTTGAGTACATGGAAAAAGGTTCTTTAGCCGATAATTTGTCATCAAATGCACTTAATTGGGGTAAGAGGTATAAAATTGCTCTCGGAACTGCAAAGTGCCTTGCATATTTACATGAACAATGTTTGGAGTGGATTTTGCATTGTGACATAAAGCCGCAAAACATACTAATTGACTCCGATTACCAACCCAAGGTAGCGGATTTTGGGTTGTCTAAGTTACTACAAAGGAACAATCTTGATAATTCAAGTTTCTCAAGGATGAGAGGGACAAGAGGTTACATGGCACCTGAATGGATTTTCAACTTTGCCAATCACTTCCAAGGTAGATGTTTATAGCTATGGAGTTGTGCTGCTAGAGATGATTACCGGGAAGAGTGCAATGACGGGTATCTTAATCACAGATGGAGAAGAGACTCATAAGGAGAGTTTGGTATCATGGGTGAGAGATAAAAGAAGGAAATTATCAGAAATGAAATCTTTGGTGGAACAAATAGTAGACCCTACATTGGGATCAAATTATGACATGGTTAAATTGGAGACTTTGACAATGGTTGCTCTAAACTGTGTTGAGGAAGAGAAAGACATGAGACCCAACATGAGTGAAGTTGTTGAAAGGCTCCAAACTCATGAACACGATTGTTGA

Protein sequence

>MS.gene03895.t1

MSPKGTFTAGFYPVGENAYSFAIWFTQKHKSLNNATVVWMANRDQPVNGKRSTLSLLKTGNVVLTDASYFNVWSTNTNSSKPLELFLYDTGNLVLRERNTNGFILWQSFDFPTDTLLPDQSFTRHMTLVSSKSDNIYSSGFYKLFFDNDNLLSLLYDGPQVSSIYWPYSWLVSWDAGRSSYNSSRVAKLDIWGSFRSSDDFTLNTSDYGTVLLRRLTLDFDGNVRVYSRKHGQEKWSISGQFHQQPFKIHGICGPNSFCINNPRTGRKCLCLPGYRRIHNQDWSQGCKPSFRLSCNNRTELETRFQRLSHVQFYGYDDGFQANYTYKQCKHLCMRTCQCIAFQYRLDKGVFYCYPKSQLQNGFSSPNFQGSIFLRLPKRKHVYFHENVVKNGILDCSRNNGVKQLRRSYVEGEENGPMNFMLWFTSGLGVIEALCFFMIWWLLFKNKKHFVRDNQGYVLAGATGFRKFTYSELKQATKCFSQEIGKGAGGTVYKGLLSDNRVVAIKRLHEANKGESEFLAEVSVIGRLNHINLIGMWGYCAEGKHRLLVFEYMEKGSLADNLSSNALNWGKRYKIALGTAKCLAYLHEQCLEWILHCDIKPQNILIDSDYQPKVADFGLSKLLQRNNLDNSSFSRMRGTRGYMAPEWIFNFANHFQDGEETHKESLVSWVRDKRRKLSEMKSLVEQIVDPTLGSNYDMVKLETLTMVALNCVEEEKDMRPNMSEVVERLQTHEHDC