AlfalfaGEDB | MS.gene039021

M. sativa cultivar XinJiangDaYe / MS.gene039021

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00564.27 PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039021.t1	RHN74468.1	96.2	1221	45	2	1	1219	1	1221	0.00E+00	2285.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039021.t1	Q9C9U5	38.6	280	154	7	925	1201	737	1001	7.6e-47	191.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039021.t1	A0A396JDJ3	96.2	1221	45	2	1	1219	1	1221	0.0e+00	2285.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039021.t1	MTR_8g442400	50.522	958	381	18	304	1219	762	1668	0.0	842
MS.gene039021.t1	MTR_8g442400	47.583	393	196	8	7	391	13	403	9.15e-93	329
MS.gene039021.t1	MTR_1g090020	78.873	284	60	0	923	1206	886	1169	6.46e-157	501
MS.gene039021.t1	MTR_1g090020	37.705	305	137	6	51	306	34	334	1.73e-42	170
MS.gene039021.t1	MTR_6g033130	75.325	308	74	1	899	1204	927	1234	1.20e-155	499
MS.gene039021.t1	MTR_6g033130	62.162	148	53	3	154	298	175	322	5.63e-44	175
MS.gene039021.t1	MTR_4g128650	64.348	345	116	3	863	1207	744	1081	8.99e-145	466
MS.gene039021.t1	MTR_4g128650	50.694	144	67	2	156	299	17	156	1.31e-27	122
MS.gene039021.t1	MTR_2g461180	72.241	299	82	1	918	1216	1108	1405	1.63e-143	470
MS.gene039021.t1	MTR_2g461180	50.311	161	69	4	144	298	191	346	4.62e-35	146

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039021.t1	AT1G79570	47.072	905	359	26	355	1219	424	1248	0.0	694
MS.gene039021.t1	AT1G79570	50.134	373	168	9	7	368	12	377	5.39e-92	323
MS.gene039021.t1	AT1G79570	47.072	905	359	26	355	1219	424	1248	0.0	694
MS.gene039021.t1	AT1G79570	50.134	373	168	9	7	368	12	377	5.39e-92	323
MS.gene039021.t1	AT1G16270	65.455	495	128	6	729	1219	692	1147	0.0	638
MS.gene039021.t1	AT1G16270	36.826	668	320	19	18	617	23	656	4.75e-91	319
MS.gene039021.t1	AT1G16270	65.455	495	128	6	729	1219	692	1147	0.0	638
MS.gene039021.t1	AT1G16270	36.826	668	320	19	18	617	23	656	4.75e-91	319
MS.gene039021.t1	AT1G16270	65.455	495	128	6	729	1219	692	1147	0.0	638
MS.gene039021.t1	AT1G16270	36.826	668	320	19	18	617	23	656	4.75e-91	319

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Find 310 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCACGAGCCTAAAAGT+TGG	0.600577	2.2:+24468755	MS.gene039021:CDS
AAACGGAATACCCTGGTGAC+AGG	0.540318	2.2:+24470840	MS.gene039021:CDS
AAAGGAATCTTAGGTCATCC+AGG	0.545485	2.2:+24466684	MS.gene039021:CDS
AACACTGATGGAGCAGTGTT+GGG	0.480300	2.2:+24472232	MS.gene039021:CDS
AACAGATCTGCCTGTTCCCT+GGG	0.457615	2.2:-24468079	None:intergenic
AACAGGCAGATCTGTTGAAC+CGG	0.470724	2.2:+24468086	MS.gene039021:CDS
AACAGTTCGGCTCTCAATCT+AGG	0.443807	2.2:+24467599	MS.gene039021:CDS
AACCAAGGAATCACGAGCAA+AGG	0.580951	2.2:+24467659	MS.gene039021:CDS
AACCATAAACTCCGTAACCG+TGG	0.656474	2.2:-24470164	None:intergenic
AACTCGGATCTGGTACCTTT+GGG	0.408303	2.2:+24469836	MS.gene039021:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTAAACGGAATACCC+TGG	+	chr2.2:24470833-24470852	MS.gene039021:CDS	30.0%
AAACAAGTAGCAAAATGATC+GGG	-	chr2.2:24470473-24470492	None:intergenic	30.0%
AAAGAGGTTATCAAAGAGAA+GGG	-	chr2.2:24471364-24471383	None:intergenic	30.0%
AAATATCAAAGAAGATGGAG+CGG	-	chr2.2:24471669-24471688	None:intergenic	30.0%
AAGAACCATTAAAAACGTAC+AGG	-	chr2.2:24469117-24469136	None:intergenic	30.0%
AATAAAGTAAAAGAAGGGGA+TGG	+	chr2.2:24468862-24468881	MS.gene039021:CDS	30.0%
AATGTCATGATCTACAAAGA+AGG	+	chr2.2:24467153-24467172	MS.gene039021:CDS	30.0%
ACATAATTTCTCCATACAGA+CGG	+	chr2.2:24466554-24466573	MS.gene039021:CDS	30.0%
ACTCTTAGTAAGCATAACTA+TGG	+	chr2.2:24469618-24469637	MS.gene039021:intron	30.0%
AGACAAATATCTCCAAAGAT+AGG	+	chr2.2:24468398-24468417	MS.gene039021:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	24466408	24472364	24466408	ID=MS.gene039021
chr2.2	mRNA	24466408	24472364	24466408	ID=MS.gene039021.t1;Parent=MS.gene039021
chr2.2	exon	24466408	24469116	24466408	ID=MS.gene039021.t1.exon1;Parent=MS.gene039021.t1
chr2.2	CDS	24466408	24469116	24466408	ID=cds.MS.gene039021.t1;Parent=MS.gene039021.t1
chr2.2	exon	24469204	24469284	24469204	ID=MS.gene039021.t1.exon2;Parent=MS.gene039021.t1
chr2.2	CDS	24469204	24469284	24469204	ID=cds.MS.gene039021.t1;Parent=MS.gene039021.t1
chr2.2	exon	24469802	24469954	24469802	ID=MS.gene039021.t1.exon3;Parent=MS.gene039021.t1
chr2.2	CDS	24469802	24469954	24469802	ID=cds.MS.gene039021.t1;Parent=MS.gene039021.t1
chr2.2	exon	24470061	24470224	24470061	ID=MS.gene039021.t1.exon4;Parent=MS.gene039021.t1
chr2.2	CDS	24470061	24470224	24470061	ID=cds.MS.gene039021.t1;Parent=MS.gene039021.t1
chr2.2	exon	24470578	24470725	24470578	ID=MS.gene039021.t1.exon5;Parent=MS.gene039021.t1
chr2.2	CDS	24470578	24470725	24470578	ID=cds.MS.gene039021.t1;Parent=MS.gene039021.t1
chr2.2	exon	24470813	24470935	24470813	ID=MS.gene039021.t1.exon6;Parent=MS.gene039021.t1
chr2.2	CDS	24470813	24470935	24470813	ID=cds.MS.gene039021.t1;Parent=MS.gene039021.t1
chr2.2	exon	24471260	24471347	24471260	ID=MS.gene039021.t1.exon7;Parent=MS.gene039021.t1
chr2.2	CDS	24471260	24471347	24471260	ID=cds.MS.gene039021.t1;Parent=MS.gene039021.t1
chr2.2	exon	24472171	24472364	24472171	ID=MS.gene039021.t1.exon8;Parent=MS.gene039021.t1
chr2.2	CDS	24472171	24472364	24472171	ID=cds.MS.gene039021.t1;Parent=MS.gene039021.t1

Gene Sequence

>MS.gene039021

ATGCAGAAACATCAATACAATTCTCTGGATCCTCGAAATGAGGAATACCATTCTGCACCGCAACCGGTCCGGCAAGACCATCTGGATGGCATGCATACCAATACAAGGCCTCCTCCTGCCTTTAGCATGTCAGAAAATAAACCTGTACATAATTTCTCCATACAGACGGGTGAGGAATTCGCTCTCGAGTTTATGAGAGATAGGGTGAATGTCAAGAAGCCTGCGTTTCCAAATGTCGTGGGCGAGCCTAGTTATTCAACAGGGTATATGGAATTGAAAGGAATCTTAGGTCATCCAGGATCTGAAAGTGGTACCGAGATTTCTATCCTCACAAATATTGAAAAAGTTCCGAAAGAGTTTGACAGAAGGAATTCTGTTCTACATCAGGAAAGAAGTAATTATGGCTCAGCTCGATCGATTCCAAGATCATCTAATCAAGACAATAACCGAGTCTTTCAAGGAATTTCCTCCTCTGGATCTTCTGAAAACTTATCTATGAAGATGAAGATTCTATGCAGCTTTGGTGGTAGAATATTACCACGTCCGGGTGACGGAAAGCTTAGATATGTCGGGGGTGAAACACGGATTATTAGTATAAGAAAGGACATAAGTTGGCCGGAGCTTATGCAGAAAATATTATCGATCTATAATGAAACTCGTGTAATAAAGTATCAGCTCCCTGGAGAAGATCTTGATGCCCTAGTTTCGGTATCTTCCGATGAGGATCTCCGGAATATGATGGAGGAATGTCATGATCTACAAAGAAGGAGAGGATCGTTAAAGCTTAGGATGTTCTTATTCTCAATAAATGAATTGGAGGATACCCAGTTTGGTCTTGGTAGCATGGATGGTGGTGATTCTGAAATCCAGTATGTCGTTGCTATTAATGGTATGGACATGGAATCAAGAAGCAACTCTATCCTTCATTGCGGAGGAAGTTCTAATAATATAAATGAATTGGACAGACAAAGTATTGACAGGGAGACTAAAAGAGTTGCGGTAGAATCATATGGTGTCGGTAGTTCTTCCTTAACCGGCAATGTTAACTCGGTATTGACAAATCAGTCTTCGCAACCAATTCTACCAACACCCTCAAATGCTTATGAAGCTTATCCGTTCTTTTACGAGGATCCGATCATTCAACAAGGGGGAACTGGTCAATATCCAATACACACTGGTCCTTTTCCTTCTAACAGTTCGGCTCTCAATCTAGGAGAGGTTCCTGTTTCTTTGCCTACTCATGGTGTTGTGAACCAAGGAATCACGAGCAAAGGACAATTATCCAGTGAGTTGCAAGTACAAAGAAGGGGTGATAATGTCATTCATGCAGCAAATGACCGAGTGAACGCTTTATCAACAGAAGCACCATATTCTCTTCCTTTGAATCCATTCGAGGGAAGTTTGCAAGGTAATTTATCAGAGGCATCAGTTCCAGCTGCTGTATCAGAAGCAATCCATCCTGCAGTTCCATTAGAAAACAAGATTCCAGCTGCTGTATCAGAAGTGCTGAATCCTACACAGATTCCAAGATCTGGGAAAGATGACTTCTATACTGCATCCACAGACGCATTCAGTCGTGCTCTTGTTGATGCCGAGTCCAATGTAATTGATTTCAGTTGCCTTGAACCACCTCCGCTTCCTAATAGAGTATATTATTCAGAGAGAGTTTTTCCCAGGGAACAGGCAGATCTGTTGAACCGGTCTGCAAAGTCGGATGATGCATATGGTTCTCACTTACTCATGTCAGATTTACTTTCCGATTTGAACCATATGAATTCAGTTAATGAATCCAGTGACATGTTGCACAGCGAGAATATGTCGAATCTGAACACAGTGTCCAACACATCAGCAAAGCCCTTGCATGCAGATGGCCATAGCATCAGCAGCAAACCTTTGCCTGATGCAACAAGTCAGGTGAATTCAAAGTTATATCAGCGTGTGGATTCTGATTTGAAGCCGGTATTATCAGATAACAAAATTTCTGAAAATGAGACAAATATCTCCAAAGATAGGCATAAAATTCCTCAAGTCGATGAAACCAAGGGCAGTGAGCATCTTGCATTTCATCGTGTTCCTTCTGTTGAACATAATGAGAATCTTGCATCTAAACTTCAAGAGCAAAATTTGTCTGCGGTTCCTACAAGGGATCCCAATAATGATGCTAAAGTCCAAGCTCCGCCTTTTGATGCTAAACCTAAACCTTCTCAAGGTGACATTCTGATTGATATTGAAGACAGGTTTCCCCGTGATTTCCTTTATGATATGTTCTCAAAAGCAGTTCATTCTGAAGATTCCGCAAATATTAGTCCATTACCAGCTGATAGAGCAGGTTTGAGCTTAAAAATGGAAAATCACGAGCCTAAAAGTTGGTCATATTTTCAGAAGCTGGCACATGAAGGGTTTGATAATGTTTCTCTAATTGATCAGGATAATCTCGGTTATTCATCAGCTGTTAATAAAGTAAAAGAAGGGGATGGTATGTTACAGCATTCTGCACCTCTACCAGCAGAGAGTGTTATGATGACAGGACCCAAGGAATCCCATTCCCAACTAAATGTAGAGGAAAATCAGAAAAGTTTACCTGTAACCACCAAAACCGAGGCTGTTGTTTTTCAACCAGAAAGTAACCCTTCTGAACTTAAGGGAAATGAAAATAACAACGTCAACGCCACAGTGGAAAACGATAGAGCTCAGGAGACTGAATATCCTGTACGTTTTTAATGGTTCTTTATCTTATGAACATGCCGACAATATGATTATTTTTTGCTGACAAATCCTTTGATGGACTGAATGTAGGATGGCAATGATGAGACAAGGGATGTGGTTTCAATTCCTCAAGATATTAGTTTTGGGGAGTTTGACATTAGTACTTTGCAGGTAAAATCATACTTTGATGTATCATAGTTCTTCAGCGCCGATGCATTATGAGTATCAATCTTCTCCATTTCTGAAAAGAAATGGACATTAAATTACTATATTTTTAATAAATAAATGATATAAAATCACACATTTTCACAATTGGTGACATTTATTGAGTATTTTTTTATTCAAAACTATGGTTATAGAGCCTTTCTTTTCTCTTGAGATATGGAAAGAATCTCTGGTACATTATATCTGCCTTTTCTACAAAATCTACTAATTTTAGTTCAACTAGTGAGCAAAGTAAATAAATTTTTCATTATTATTACAATTTTTCGAAATGAAAATATCACTCTTAGTAAGCATAACTATGGCATATTCAGTACAAATTAGTTTCTATGATAATGGCTTCATGAATATCTGTACTAGATGATGGCTTGGGGGCTTAACGGTCAATTTATCGTTATGTTATAAAATTAAAGTTAATATTTTCCAACACTTATTACATTACATATATTTATGATAAACATGACAGATCATAATGAATGCGGATCTTGAAGAACTGAGAGAACTCGGATCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGGGGATCTGATGTTGCAATTAAAAGAATAAAGAAAAGCTGTTTCTCCGGTCGGTCTTCAGAACAAGAGAGACTGGTAACTTGTCTATAAATCACATGGAGTGCTTTTTGTTCCATTTTCCTTTGTTTTCCGTGCCACTATTAAAATGACTTATATCGATGAAATCTGCGTCCTCTTTTAGACGATAGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTGGCCTTTTATGGTGTAGTTCAAGATGGACCAGGAGGTACAATGGCCACGGTTACGGAGTTTATGGTTGATGGTTCTCTTCGGCATGTTTTGCTACGTAAGGATAGGTAATGCATCCATCTGCAAAATTATAGCATTTCTATTGAGTAGCTTATTATTCAATGAGCTTAATTTTGATACATTGTGAGTGTAAAACTTTACACTTTCAGCGAATCACAAGCAATCATCTGTGAGTTTAAACGTAGTTATGATTAAAGTCAACTGTTTTTAATGATCCAACTATTATGACTAATTAACATTGTAAAATATCTTAACACTGATGGTGAACATGAATTAAATTCTTCAATTAAAGCCCGATCATTTTGCTACTTGTTTAGTCTTTAGATACCATTAACTATTTTATCATCAAGAAAATTGTTGAAGGGATTTTTGCATGATCTTATCATATGGTTCCATCCAGGTATCTTGATCGCCGCAAGAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAGTACTTACATGCAAAAAATATTGTTCATTTTGACTTAAAATGTGACAATTTGCTTGTGAACATGAAGGATCCTTTACGGCCAATATGCAAGGTATTTATTCATGTATTGTGGATTATTGATTCTATTAAACTTTGTCTTCAGTATTTTGACAACGTTGAAAAACTTGATTTTCATCAGGTTGGAGATTTTGGCCTGTCAAAAATTAAACGGAATACCCTGGTGACAGGTGGTGTGCGTGGAACTCTACCTTGGATGGCACCGGAGCTGCTGAATGGGAGCAGCAATAAGGTTTCAGAAAAGGTAAAAGTTTAACCACGATATATGTTCACCAAGGTTTCATTAGGCATGAAAATTATGTTCAAATATACACTACTTTCAGGTATTAAAAAATACATGATATTTATTAACTAAGATATATGTTCAATGGATGATTAATGGGCTGCGACACTTTGTTATACCCATTAATCATCCATTGAATGTAATTAACCATATATTTGAATATCACTAACTACTAAAATTGTTGTCAAAAGTTGTCCCATTTCGTGTCAAAATAACACAGTTCTGTCTCATTATCTCATTAACTGAGAAGCCTTAGTGACTAATGCTATCTTGCCTAATGTTTAGGTTGATGTATTTTCCTTTGGCATTGTACTATGGGAGATTCTTACTGGGGAGGAGCCATATGCTAATATGCACTATGGTGCAATCATAGGTACTTTTCTTTTCCCTTCTCTTTGATAACCTCTTTACAGTTGCTTGGATTCAAGTTGTGTCGAACCTTTCTAAAGCACTAGTTTGCATCAATTGTACTTTCACTGCATTGATAGAATTTTAATTAAATCTCATAATAACACATGTCGGACTAGTTCTGTAGTTTAATTTACATCCAACAATATCAAATGTGTGGATAAAATAAAGAAACAAAACAACTCTTACAGAACCTGGAGAAAACACAACTTTGTAGCAGAACTTTCATCGGAGAGCTCAATCATCTTATCTTGCCAATTGTAACTTTGCACCTAAACATTTTCCGCTCCATCTTCTTTGATATTTTCAAATACGTTGCTTCCTTAAATTTTCTATGACAGTTCATATCAGTGGATGAGAAAATTGCAAAGATTCAATGCCTTTTGTTTTTCTGTATAAATTTAAGAATGACTATGACTTGTTCTTACAAGGAACTTCAGATAGTGTGCATAAATTTATGCTGCTCTTGCATGCATGCATTTCTGAATTTATTTTTCCTGTGATAATTGTTTAACCTCTCAGAGCTTAGATGATCTGCTTTCTCATATTTATTGCCTATGTATCACCGACACTTTTATTGTCTGATGTCTAACACATGTTAGTATCCGACATGGACATGTGGTTACATTCAAATATTTCATATCTCAAATTATTACTAGTGTCAACATGCCAGTGTAAATGTCAGTGGCGTGTCTAGTCATATTTGTTCATGCATAAAAAAGCCATTCTGTACTCTTATTCAAATTCTATATATTTCTCCTCACTCTCTTGCACACTCATATATACAGGAGGTATTGTGAACAACACATTAAGACCAACAATCCCAAGTTATTGTGATCTAGAATGGAGAACACTGATGGAGCAGTGTTGGGCACCTAACCCTGCAGTAAGGCCATCCTTTACAGAAATTGCGCGCCGCTTGCGCGTGATGTCCGCAGCTGCTGCTCATACCAAAGGACAAGGACACAAGGCATCTAAATGA

Protein sequence

>MS.gene039021.t1

MQKHQYNSLDPRNEEYHSAPQPVRQDHLDGMHTNTRPPPAFSMSENKPVHNFSIQTGEEFALEFMRDRVNVKKPAFPNVVGEPSYSTGYMELKGILGHPGSESGTEISILTNIEKVPKEFDRRNSVLHQERSNYGSARSIPRSSNQDNNRVFQGISSSGSSENLSMKMKILCSFGGRILPRPGDGKLRYVGGETRIISIRKDISWPELMQKILSIYNETRVIKYQLPGEDLDALVSVSSDEDLRNMMEECHDLQRRRGSLKLRMFLFSINELEDTQFGLGSMDGGDSEIQYVVAINGMDMESRSNSILHCGGSSNNINELDRQSIDRETKRVAVESYGVGSSSLTGNVNSVLTNQSSQPILPTPSNAYEAYPFFYEDPIIQQGGTGQYPIHTGPFPSNSSALNLGEVPVSLPTHGVVNQGITSKGQLSSELQVQRRGDNVIHAANDRVNALSTEAPYSLPLNPFEGSLQGNLSEASVPAAVSEAIHPAVPLENKIPAAVSEVLNPTQIPRSGKDDFYTASTDAFSRALVDAESNVIDFSCLEPPPLPNRVYYSERVFPREQADLLNRSAKSDDAYGSHLLMSDLLSDLNHMNSVNESSDMLHSENMSNLNTVSNTSAKPLHADGHSISSKPLPDATSQVNSKLYQRVDSDLKPVLSDNKISENETNISKDRHKIPQVDETKGSEHLAFHRVPSVEHNENLASKLQEQNLSAVPTRDPNNDAKVQAPPFDAKPKPSQGDILIDIEDRFPRDFLYDMFSKAVHSEDSANISPLPADRAGLSLKMENHEPKSWSYFQKLAHEGFDNVSLIDQDNLGYSSAVNKVKEGDGMLQHSAPLPAESVMMTGPKESHSQLNVEENQKSLPVTTKTEAVVFQPESNPSELKGNENNNVNATVENDRAQETEYPDGNDETRDVVSIPQDISFGEFDISTLQIIMNADLEELRELGSGTFGTVYHGKWRGSDVAIKRIKKSCFSGRSSEQERLTIEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEFMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHAKNIVHFDLKCDNLLVNMKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSYCDLEWRTLMEQCWAPNPAVRPSFTEIARRLRVMSAAAAHTKGQGHKASK