AlfalfaGEDB | MS.gene039033

M. sativa cultivar XinJiangDaYe / MS.gene039033

KEGG: -
GO: GO:0003674 GO:0005488 GO:0005515 GO:0046983
PFAM: PF00010.29

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039033.t1	KEH42071.1	88.4	319	17	10	1	308	178	487	3.50E-141	511.1

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039033.t1	Q9SA82	36.3	267	141	9	53	301	7	262	2.2e-27	124.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039033.t1	A0A072VKB3	88.4	319	17	10	1	308	178	487	2.5e-141	511.1

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene039033.t1	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039033.t1	MTR_1g060700	89.655	319	13	10	1	308	178	487	0.0	540
MS.gene039033.t1	MTR_2g067000	86.817	311	25	4	1	308	1	298	0.0	502
MS.gene039033.t1	MTR_8g093500	58.491	53	22	0	178	230	125	177	9.30e-13	67.8
MS.gene039033.t1	MTR_3g101810	58.491	53	22	0	178	230	182	234	3.30e-12	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039033.t1	AT1G30670	38.596	228	121	7	87	301	41	262	3.84e-30	115
MS.gene039033.t1	AT2G34820	40.084	237	107	8	87	301	66	289	5.51e-26	104
MS.gene039033.t1	AT3G21330	60.377	53	21	0	178	230	280	332	4.37e-13	69.3
MS.gene039033.t1	AT5G01305	50.000	58	29	0	178	235	48	105	4.69e-12	63.9

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Find 48 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAAATCTTCCTCATT+TGG	0.263570	2.2:+24326318	None:intergenic
AAATAACACTATTCTTGCTT+TGG	0.365183	2.2:+24324813	None:intergenic
AAATGAAATCTTCCTCATTT+GGG	0.325640	2.2:+24326319	None:intergenic
AAGCAAAAGGGTTAGGGTTA+GGG	0.345934	2.2:+24326172	None:intergenic
AAGGGTCTGAAACAGCTTGT+TGG	0.460418	2.2:-24324855	MS.gene039033:CDS
AAGTTTCTTCAAGCTCAAGT+TGG	0.567049	2.2:-24325949	MS.gene039033:CDS
AATTTGGTGACAAACTCTTT+TGG	0.289383	2.2:+24324918	None:intergenic
ACTGAGAAGACACAAGAGCT+TGG	0.499993	2.2:-24326039	MS.gene039033:CDS
ACTTATGGAAACATTTAGCA+AGG	0.569731	2.2:-24325917	MS.gene039033:intron
AGAGTATCGCGGCTCGAGAA+AGG	0.514420	2.2:-24326074	MS.gene039033:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGACAAAATTGAGACAGT+AGG	+	chr2.2:24325905-24325924	None:intergenic	30.0%
ACTTATGGAAACATTTAGCA+AGG	-	chr2.2:24325510-24325529	MS.gene039033:intron	30.0%
AGTTTGTGTAAATCTTCACT+TGG	+	chr2.2:24326434-24326453	None:intergenic	30.0%
GAAAAAAAGGGTTAAGGAAA+CGG	-	chr2.2:24326049-24326068	MS.gene039033:CDS	30.0%
TAATATCCTTCCAAGTGTTT+GGG	+	chr2.2:24326231-24326250	None:intergenic	30.0%
TTAATATCCTTCCAAGTGTT+TGG	+	chr2.2:24326232-24326251	None:intergenic	30.0%
TTGTTCATGATGTTGAAAAG+TGG	+	chr2.2:24324906-24324925	None:intergenic	30.0%
AAGTTTCTTCAAGCTCAAGT+TGG	-	chr2.2:24325478-24325497	MS.gene039033:intron	35.0%
AGTAGTTGATCATCTTGACA+AGG	+	chr2.2:24325031-24325050	None:intergenic	35.0%
AGTTGGAATGCTTCAACTTA+TGG	-	chr2.2:24325495-24325514	MS.gene039033:intron	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	24324821	24326628	24324821	ID=MS.gene039033
chr2.2	mRNA	24324821	24326628	24324821	ID=MS.gene039033.t1;Parent=MS.gene039033
chr2.2	exon	24325918	24326628	24325918	ID=MS.gene039033.t1.exon1;Parent=MS.gene039033.t1
chr2.2	CDS	24325918	24326628	24325918	ID=cds.MS.gene039033.t1;Parent=MS.gene039033.t1
chr2.2	exon	24324821	24325036	24324821	ID=MS.gene039033.t1.exon2;Parent=MS.gene039033.t1
chr2.2	CDS	24324821	24325036	24324821	ID=cds.MS.gene039033.t1;Parent=MS.gene039033.t1

Gene Sequence

>MS.gene039033

ATGGGAGCACTTAGCACATACTTTAACTATAATTGTTACCCTTATCAACCTATTCAAACTGCTACCAACAACTCAGAAATCACCACTTTTCAACATCATGAACAAGAACAACTTGTGCAACAAAACCACTATTTCAATGAAGCTTCTCTTTTAGATGAAAGCTTCATTTTTCAAACTCCTAATTGTTTTTACTCAAATGAGACTTACCCTTGTCAAGATGATCAACTACTTGTTGACTCCACTTTTTCTTCTCAAAACGATGGCTTCGTTTCAATGAATGAAATTTTCCCAAATGAGGAAGATTTCATTTTCAACAACTACCAGCTTCATTGTCCAAAACGCCAAAAGCTGTTATACTATGAGGAGAAAAGAGAAGAGCCACAACAAGAGCTTTTCAACTCAACCAATTTTTTTGTGGATGAGTTTATGACTAACCCTAACCCTAACCCTTTTGCTTCCTTTGAGGCAGAACCAAAAATTGTTGATGTTGTTCAATGTGAGAAGAAAGTTGGTGAAAGGACTATCTCGTCGCAGAGTATCGCGGCTCGAGAAAGGAGAAGGAAGATAACTGAGAAGACACAAGAGCTTGGGAAGTTGGTTCCTGGTGGACCAAAGATGAACACAGCAGAGATGCTTCATGCTGCTGCTAATTATGTCAAGTTTCTTCAAGCTCAAGTTGGAATGCTTCAACTTATGGAAACATTTAGCAAGGTAACTGTTTTTGCTTTTTTATTGTTGCAATGTTCTTATATTATTAGAGCTCATAATTGAAGTTAATTACTTTTCTTCACTTGAGTTTCGATTTCAACTGTTTTATGTCCTTAGGTCTTATGTAATACTCCGATTGAATTTGCATGTTTTTCTTTTGAATGATGTTTTTTGCTTTTTATATTATGCTATGCTACTTGATTTTGTTTTTGGACCCTTTCTTGTAATCATTTGAGTATATTTTGTTTGATCAAAATAATATTGAGTATGTATATGTCATTTATTGTAGTGTTATTATGTCATGTATTGTGGTAAATATCTAGATGGATGTTAATTCTTTTTTCATTTATGTATGTAATGTAATCCATGACTACCTACTGTCTCAATTTTGTCTTTTTTATATTGGTTTTTTTTTCTTACCAATTTTTACTCCATGAAAATATTTAGCAATTGTTATAAAAATTGATGGATGCAATTGTTAGGATTAAGAAAATGTTTGTTAGTGTGTGTGTGTGTGAGAGAAAAAAAGGGTTAAGGAAACGGTTACTAAGAAGAGGAAATGGTAAATAATGAGAGAGTATTTAGGAACAACAAGTGTATATCAAATGAGCTGGCTATGTAACTGTTCAACAAGGAATTATCCACTTTTTTTAAAAAAAAAATATTCATTATTTTTACTTTCTTTATTGTATTTAGTTTCCCAAACACTTGGAAGGATATTAAAAAATTTATCATCCCATGACATGATTCAGCACCTAGAAAATAATAAAATTAATAGTGTAACATTTTTGTAAAAGCTGAATTCCTAGTGTAACTTTATACAATAAAATTAATTAATGCTTAGAATATTCATTCTCTTAGATTTTGCTAATTGATTATTTCAGGAAGAAAAGGAACCTCCTCCAAGTGAAGATTTACACAAACTAGTTGTTTCTCCATTTGTTCAAGAGAAATTGTATTCAGAAGAAAAGTGCTTTGTTCCAAAAGAGTTTGTCACCAAATTGAGCAATCATAATGATGTTCAATCAAAACCTACCATCCTTAAGGGTCTGAAACAGCTTGTTGGAACTGAGATTGAGAAGAAACCAAAGCAAGAATAG

Protein sequence

>MS.gene039033.t1

MGALSTYFNYNCYPYQPIQTATNNSEITTFQHHEQEQLVQQNHYFNEASLLDESFIFQTPNCFYSNETYPCQDDQLLVDSTFSSQNDGFVSMNEIFPNEEDFIFNNYQLHCPKRQKLLYYEEKREEPQQELFNSTNFFVDEFMTNPNPNPFASFEAEPKIVDVVQCEKKVGERTISSQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAANYVKFLQAQVGMLQLMETFSKEEKEPPPSEDLHKLVVSPFVQEKLYSEEKCFVPKEFVTKLSNHNDVQSKPTILKGLKQLVGTEIEKKPKQE