Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039070.t1 | XP_003596140.2 | 98.1 | 266 | 5 | 0 | 1 | 266 | 8 | 273 | 2.20E-152 | 548.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039070.t1 | Q940T9 | 30.6 | 170 | 103 | 7 | 47 | 212 | 186 | 344 | 5.8e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039070.t1 | G7ITD4 | 98.1 | 266 | 5 | 0 | 1 | 266 | 1 | 266 | 1.6e-152 | 548.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene039070.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039070.t1 | MTR_2g068730 | 98.120 | 266 | 5 | 0 | 1 | 266 | 1 | 266 | 0.0 | 560 |
| MS.gene039070.t1 | MTR_8g098725 | 77.419 | 62 | 14 | 0 | 149 | 210 | 211 | 272 | 1.83e-24 | 100 |
| MS.gene039070.t1 | MTR_8g098725 | 77.419 | 62 | 14 | 0 | 149 | 210 | 215 | 276 | 1.94e-24 | 100 |
| MS.gene039070.t1 | MTR_5g010120 | 53.846 | 91 | 39 | 1 | 136 | 226 | 149 | 236 | 1.39e-23 | 96.3 |
| MS.gene039070.t1 | MTR_1g044785 | 45.192 | 104 | 47 | 1 | 117 | 210 | 78 | 181 | 1.71e-22 | 92.8 |
| MS.gene039070.t1 | MTR_1g073350 | 56.164 | 73 | 32 | 0 | 144 | 216 | 297 | 369 | 2.42e-21 | 92.8 |
| MS.gene039070.t1 | MTR_2g096080 | 74.074 | 54 | 14 | 0 | 154 | 207 | 146 | 199 | 4.04e-19 | 84.3 |
| MS.gene039070.t1 | MTR_4g061823 | 61.667 | 60 | 23 | 0 | 148 | 207 | 130 | 189 | 1.52e-17 | 79.7 |
| MS.gene039070.t1 | MTR_4g061910 | 61.667 | 60 | 23 | 0 | 148 | 207 | 130 | 189 | 1.52e-17 | 79.7 |
| MS.gene039070.t1 | MTR_3g091340 | 60.000 | 50 | 20 | 0 | 159 | 208 | 197 | 246 | 3.73e-13 | 67.8 |
| MS.gene039070.t1 | MTR_3g091340 | 60.000 | 50 | 20 | 0 | 159 | 208 | 190 | 239 | 3.83e-13 | 67.8 |
| MS.gene039070.t1 | MTR_3g091340 | 60.000 | 50 | 20 | 0 | 159 | 208 | 226 | 275 | 7.15e-13 | 67.4 |
| MS.gene039070.t1 | MTR_1g008220 | 53.061 | 49 | 23 | 0 | 159 | 207 | 228 | 276 | 1.20e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039070.t1 | AT3G12890 | 54.348 | 138 | 59 | 3 | 119 | 256 | 98 | 231 | 1.48e-43 | 148 |
| MS.gene039070.t1 | AT5G41380 | 75.806 | 62 | 15 | 0 | 149 | 210 | 201 | 262 | 5.44e-25 | 101 |
| MS.gene039070.t1 | AT1G63820 | 60.241 | 83 | 31 | 1 | 149 | 229 | 178 | 260 | 1.06e-23 | 97.8 |
| MS.gene039070.t1 | AT1G04500 | 42.857 | 126 | 55 | 3 | 100 | 224 | 237 | 346 | 4.64e-23 | 97.4 |
| MS.gene039070.t1 | AT1G04500 | 42.857 | 126 | 55 | 3 | 100 | 224 | 237 | 346 | 4.64e-23 | 97.4 |
| MS.gene039070.t1 | AT1G04500 | 42.857 | 126 | 55 | 3 | 100 | 224 | 228 | 337 | 4.73e-23 | 97.1 |
| MS.gene039070.t1 | AT2G33350 | 69.355 | 62 | 19 | 0 | 154 | 215 | 302 | 363 | 3.00e-22 | 95.5 |
| MS.gene039070.t1 | AT2G33350 | 69.355 | 62 | 19 | 0 | 154 | 215 | 301 | 362 | 3.07e-22 | 95.1 |
| MS.gene039070.t1 | AT2G33350 | 69.355 | 62 | 19 | 0 | 154 | 215 | 290 | 351 | 3.35e-22 | 95.1 |
| MS.gene039070.t1 | AT2G33350 | 69.355 | 62 | 19 | 0 | 154 | 215 | 310 | 371 | 4.29e-22 | 95.1 |
| MS.gene039070.t1 | AT5G59990 | 43.119 | 109 | 61 | 1 | 106 | 214 | 107 | 214 | 6.00e-15 | 72.8 |
| MS.gene039070.t1 | AT4G27900 | 53.061 | 49 | 23 | 0 | 159 | 207 | 210 | 258 | 6.04e-12 | 64.7 |
| MS.gene039070.t1 | AT4G27900 | 53.061 | 49 | 23 | 0 | 159 | 207 | 210 | 258 | 6.04e-12 | 64.7 |
| MS.gene039070.t1 | AT5G53420 | 55.102 | 49 | 22 | 0 | 159 | 207 | 135 | 183 | 7.33e-12 | 63.2 |
| MS.gene039070.t1 | AT5G53420 | 55.102 | 49 | 22 | 0 | 159 | 207 | 135 | 183 | 7.33e-12 | 63.2 |
| MS.gene039070.t1 | AT5G53420 | 55.102 | 49 | 22 | 0 | 159 | 207 | 135 | 183 | 7.33e-12 | 63.2 |
| MS.gene039070.t1 | AT5G53420 | 55.102 | 49 | 22 | 0 | 159 | 207 | 214 | 262 | 8.72e-12 | 64.3 |
| MS.gene039070.t1 | AT5G24930 | 30.460 | 174 | 102 | 6 | 47 | 214 | 186 | 346 | 7.86e-11 | 62.0 |
Find 52 sgRNAs with CRISPR-Local
Find 97 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCTTCTTGGATTCCAAATT+TGG | 0.102128 | 2.4:-26711959 | MS.gene039070:CDS |
| TCTTGTTGCTCAACCAAATT+TGG | 0.128585 | 2.4:+26711946 | None:intergenic |
| ATTGTGACGCTTCGGCTTCT+TGG | 0.223720 | 2.4:-26711972 | MS.gene039070:CDS |
| ATGCCTGTTTATGATAATTA+TGG | 0.229776 | 2.4:-26712021 | MS.gene039070:CDS |
| TTTATTATCAGATTGTAAAA+TGG | 0.231726 | 2.4:-26711908 | MS.gene039070:CDS |
| CTAATGTTGCAAGAGAAAAT+TGG | 0.300530 | 2.4:-26711753 | MS.gene039070:CDS |
| AATAATCAGCCACATATTAT+TGG | 0.303040 | 2.4:-26711841 | MS.gene039070:CDS |
| TGCTGATTCATTTCAGTTCC+AGG | 0.315116 | 2.4:-26710880 | MS.gene039070:intron |
| CACATTAATGAAGATTTCTA+TGG | 0.323076 | 2.4:-26710903 | MS.gene039070:CDS |
| TCAAGAGGCCATGGCAAGTT+TGG | 0.324460 | 2.4:-26710266 | MS.gene039070:CDS |
| TACCTTCCTACCTTTATGTT+TGG | 0.326979 | 2.4:+26711227 | None:intergenic |
| GCAACAAGATTTCGCTGTTC+CGG | 0.338361 | 2.4:-26711932 | MS.gene039070:CDS |
| TTATTATCAGATTGTAAAAT+GGG | 0.383948 | 2.4:-26711907 | MS.gene039070:CDS |
| GCTCCATAATTATCATAAAC+AGG | 0.394748 | 2.4:+26712018 | None:intergenic |
| GAAAATATATAAGACCTTGA+TGG | 0.404923 | 2.4:+26711133 | None:intergenic |
| GTCACTTGATTGTGACGCTT+CGG | 0.429884 | 2.4:-26711980 | MS.gene039070:CDS |
| TAATGTTGCAAGAGAAAATT+GGG | 0.435066 | 2.4:-26711752 | MS.gene039070:intron |
| CATATCATCTGGTGATGAAT+GGG | 0.440400 | 2.4:+26710234 | None:intergenic |
| TGATAGAAGAGTAAGAGTGA+GGG | 0.443578 | 2.4:-26711000 | MS.gene039070:CDS |
| GAAGAGTAAGAGTGAGGGGA+AGG | 0.444124 | 2.4:-26710995 | MS.gene039070:CDS |
| AATTAATTGCAGGGGATTCA+AGG | 0.444134 | 2.4:-26711275 | MS.gene039070:intron |
| ACATATCATCTGGTGATGAA+TGG | 0.448395 | 2.4:+26710233 | None:intergenic |
| AGTTGAAGAGCCAAACATAA+AGG | 0.450736 | 2.4:-26711237 | MS.gene039070:CDS |
| GCAACATTAGGATAAGTTGT+AGG | 0.468600 | 2.4:+26711766 | None:intergenic |
| TAATTAATTCACATATCATC+TGG | 0.472556 | 2.4:+26710223 | None:intergenic |
| CTGATAGAAGAGTAAGAGTG+AGG | 0.485744 | 2.4:-26711001 | MS.gene039070:CDS |
| AGAAGATCAATGTTGTGGTT+TGG | 0.497235 | 2.4:-26711806 | MS.gene039070:CDS |
| GGAGGGTTTCAGAATTTCAA+TGG | 0.499215 | 2.4:-26711874 | MS.gene039070:CDS |
| TTACAATCTGATAATAAAGC+CGG | 0.515082 | 2.4:+26711913 | None:intergenic |
| GAAGGTACTCAGAAGAAGAA+AGG | 0.519719 | 2.4:-26711211 | MS.gene039070:CDS |
| GATAGAAGAGTAAGAGTGAG+GGG | 0.529042 | 2.4:-26710999 | MS.gene039070:CDS |
| ATAGAAGTGATGAGGGATTG+TGG | 0.543919 | 2.4:+26712134 | None:intergenic |
| GCAGTTAAAGAATGAAGAAG+AGG | 0.550467 | 2.4:-26710296 | MS.gene039070:intron |
| AACTCATGACCAATAATATG+TGG | 0.550988 | 2.4:+26711832 | None:intergenic |
| TAGTTTGTATAGAAGTGATG+AGG | 0.558490 | 2.4:+26712126 | None:intergenic |
| TATGGACAATACTATGATGT+GGG | 0.559347 | 2.4:-26712061 | MS.gene039070:CDS |
| AGTTTGTATAGAAGTGATGA+GGG | 0.571794 | 2.4:+26712127 | None:intergenic |
| TCTGATTTCACCACACAACA+AGG | 0.572962 | 2.4:-26712099 | MS.gene039070:CDS |
| GAAGAGCCAAACATAAAGGT+AGG | 0.576416 | 2.4:-26711233 | MS.gene039070:CDS |
| AGCCAAACATAAAGGTAGGA+AGG | 0.578415 | 2.4:-26711229 | MS.gene039070:CDS |
| TAAAGAATGAAGAAGAGGAC+TGG | 0.579395 | 2.4:-26710291 | MS.gene039070:CDS |
| GGACTGGCTTCAAGAGGCCA+TGG | 0.582269 | 2.4:-26710275 | MS.gene039070:CDS |
| AAACTTCAACAAAACCATCA+AGG | 0.586667 | 2.4:-26711147 | MS.gene039070:intron |
| TTATGGACAATACTATGATG+TGG | 0.594335 | 2.4:-26712062 | MS.gene039070:CDS |
| TAAATAGACCAAACTTGCCA+TGG | 0.601398 | 2.4:+26710258 | None:intergenic |
| ACATTAGGATAAGTTGTAGG+TGG | 0.601914 | 2.4:+26711769 | None:intergenic |
| CTGATTTCACCACACAACAA+GGG | 0.621194 | 2.4:-26712098 | MS.gene039070:CDS |
| AGAAGAGGACTGGCTTCAAG+AGG | 0.645775 | 2.4:-26710281 | MS.gene039070:CDS |
| GACATGTGAAGAAGATCACA+TGG | 0.652465 | 2.4:-26710955 | MS.gene039070:CDS |
| TTTGTAGAAGATCAATGTTG+TGG | 0.662640 | 2.4:-26711811 | MS.gene039070:CDS |
| TGAAGAAAACCCTTGTTGTG+TGG | 0.693927 | 2.4:+26712089 | None:intergenic |
| ATGGACAATACTATGATGTG+GGG | 0.739532 | 2.4:-26712060 | MS.gene039070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTTAAAAATTAAGTAA+AGG | + | chr2.4:26710844-26710863 | None:intergenic | 10.0% |
| !!! | AAGTATATAACTTTTTTTTA+AGG | - | chr2.4:26711912-26711931 | MS.gene039070:CDS | 10.0% |
| !!! | CATTTTTATTAGATTTTTTT+TGG | - | chr2.4:26711606-26711625 | MS.gene039070:intron | 10.0% |
| !!! | TTATATACTTTTTTTTTGTA+GGG | + | chr2.4:26711902-26711921 | None:intergenic | 10.0% |
| !! | ATCAATTTAAGAACATAATT+AGG | + | chr2.4:26712049-26712068 | None:intergenic | 15.0% |
| !! | TTATTATCAGATTGTAAAAT+GGG | - | chr2.4:26710468-26710487 | MS.gene039070:intron | 15.0% |
| !! | TTTATTATCAGATTGTAAAA+TGG | - | chr2.4:26710467-26710486 | MS.gene039070:intron | 15.0% |
| !!! | AAAATTCATCTCTAATTTTA+TGG | + | chr2.4:26711959-26711978 | None:intergenic | 15.0% |
| !!! | ATAGTTTAGTACTTTTTTTA+GGG | + | chr2.4:26711654-26711673 | None:intergenic | 15.0% |
| !!! | GTTATATACTTTTTTTTTGT+AGG | + | chr2.4:26711903-26711922 | None:intergenic | 15.0% |
| !!! | TATAGTTTAGTACTTTTTTT+AGG | + | chr2.4:26711655-26711674 | None:intergenic | 15.0% |
| !!! | TATATACTTTTTTTTTGTAG+GGG | + | chr2.4:26711901-26711920 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAGAAAAAATCCT+AGG | - | chr2.4:26710887-26710906 | MS.gene039070:CDS | 15.0% |
| !! | TTTAATTCATATACACTAAG+TGG | - | chr2.4:26711743-26711762 | MS.gene039070:intron | 20.0% |
| !!! | AACTAAACAGTTTTTATAGT+CGG | + | chr2.4:26711777-26711796 | None:intergenic | 20.0% |
| !!! | TCAAAGTGTTATTTATATCA+TGG | - | chr2.4:26710690-26710709 | MS.gene039070:intron | 20.0% |
| !!! | TTATATATTTTCTCACATGA+TGG | - | chr2.4:26711253-26711272 | MS.gene039070:CDS | 20.0% |
| !!! | TTTTTGGTGAAAATGTTTAA+CGG | + | chr2.4:26711698-26711717 | None:intergenic | 20.0% |
| ! | AATAATCAGCCACATATTAT+TGG | - | chr2.4:26710534-26710553 | MS.gene039070:intron | 25.0% |
| ! | ATGCCTGTTTATGATAATTA+TGG | - | chr2.4:26710354-26710373 | MS.gene039070:intron | 25.0% |
| ! | CACATTAATGAAGATTTCTA+TGG | - | chr2.4:26711472-26711491 | MS.gene039070:intron | 25.0% |
| ! | GAAAATATATAAGACCTTGA+TGG | + | chr2.4:26711245-26711264 | None:intergenic | 25.0% |
| ! | TAATGTTGCAAGAGAAAATT+GGG | - | chr2.4:26710623-26710642 | MS.gene039070:intron | 25.0% |
| ! | TCTAATGCATTAATAAGCAT+AGG | - | chr2.4:26710863-26710882 | MS.gene039070:intron | 25.0% |
| ! | TTAACGTGAAATTAATTGCA+GGG | - | chr2.4:26711091-26711110 | MS.gene039070:intron | 25.0% |
| ! | TTACAATCTGATAATAAAGC+CGG | + | chr2.4:26710465-26710484 | None:intergenic | 25.0% |
| !! | GATTGTAAAATGGGATTTTA+TGG | - | chr2.4:26710477-26710496 | MS.gene039070:intron | 25.0% |
| !! | GTCTACATTTTGTGTTTAAT+TGG | - | chr2.4:26712004-26712023 | MS.gene039070:CDS | 25.0% |
| !! | TTATTTTCTCAAGATGTCAA+GGG | + | chr2.4:26710914-26710933 | None:intergenic | 25.0% |
| !! | TTTTGGTGAAAATGTTTAAC+GGG | + | chr2.4:26711697-26711716 | None:intergenic | 25.0% |
| !!! | TTTATTTTCTCAAGATGTCA+AGG | + | chr2.4:26710915-26710934 | None:intergenic | 25.0% |
| AAACTTCAACAAAACCATCA+AGG | - | chr2.4:26711228-26711247 | MS.gene039070:CDS | 30.0% | |
| AACTCATGACCAATAATATG+TGG | + | chr2.4:26710546-26710565 | None:intergenic | 30.0% | |
| AGTTTGTATAGAAGTGATGA+GGG | + | chr2.4:26710251-26710270 | None:intergenic | 30.0% | |
| CAGGTAACTTTCATGATTTA+AGG | - | chr2.4:26711514-26711533 | MS.gene039070:intron | 30.0% | |
| CATACTGCAAAATTATGTGA+AGG | + | chr2.4:26711336-26711355 | None:intergenic | 30.0% | |
| CTAATGTTGCAAGAGAAAAT+TGG | - | chr2.4:26710622-26710641 | MS.gene039070:intron | 30.0% | |
| CTTAAATCATGAAAGTTACC+TGG | + | chr2.4:26711516-26711535 | None:intergenic | 30.0% | |
| GCTCCATAATTATCATAAAC+AGG | + | chr2.4:26710360-26710379 | None:intergenic | 30.0% | |
| GGGAATTATAGTTAAGTACT+TGG | + | chr2.4:26711634-26711653 | None:intergenic | 30.0% | |
| GTTAACGTGAAATTAATTGC+AGG | - | chr2.4:26711090-26711109 | MS.gene039070:intron | 30.0% | |
| TAACGTGAAATTAATTGCAG+GGG | - | chr2.4:26711092-26711111 | MS.gene039070:intron | 30.0% | |
| TATGGACAATACTATGATGT+GGG | - | chr2.4:26710314-26710333 | MS.gene039070:intron | 30.0% | |
| TTATGGACAATACTATGATG+TGG | - | chr2.4:26710313-26710332 | MS.gene039070:intron | 30.0% | |
| TTTGTAGAAGATCAATGTTG+TGG | - | chr2.4:26710564-26710583 | MS.gene039070:intron | 30.0% | |
| ! | AAAAGTGCACATATGAATGA+TGG | - | chr2.4:26711844-26711863 | MS.gene039070:CDS | 30.0% |
| ! | AGGGTTTTCTTCAACAATTA+TGG | - | chr2.4:26710296-26710315 | MS.gene039070:intron | 30.0% |
| ! | CAATTTTCTCTTGCAACATT+AGG | + | chr2.4:26710624-26710643 | None:intergenic | 30.0% |
| ! | GTTTTTCTTGATCAAGTACA+TGG | - | chr2.4:26710712-26710731 | MS.gene039070:intron | 30.0% |
| ! | TAAACAGTTTTTATAGTCGG+AGG | + | chr2.4:26711774-26711793 | None:intergenic | 30.0% |
| ! | TAGTTTGTATAGAAGTGATG+AGG | + | chr2.4:26710252-26710271 | None:intergenic | 30.0% |
| ! | TCATCTCTAATTTTATGGAG+TGG | + | chr2.4:26711954-26711973 | None:intergenic | 30.0% |
| ! | TGTAAAATGGGATTTTATGG+TGG | - | chr2.4:26710480-26710499 | MS.gene039070:intron | 30.0% |
| !!! | ATGATTCTCAAGCTTTTTTG+TGG | + | chr2.4:26711446-26711465 | None:intergenic | 30.0% |
| AATTAATTGCAGGGGATTCA+AGG | - | chr2.4:26711100-26711119 | MS.gene039070:intron | 35.0% | |
| ACATTAGGATAAGTTGTAGG+TGG | + | chr2.4:26710609-26710628 | None:intergenic | 35.0% | |
| AGAAGATCAATGTTGTGGTT+TGG | - | chr2.4:26710569-26710588 | MS.gene039070:intron | 35.0% | |
| AGTTGAAGAGCCAAACATAA+AGG | - | chr2.4:26711138-26711157 | MS.gene039070:intron | 35.0% | |
| ATGGACAATACTATGATGTG+GGG | - | chr2.4:26710315-26710334 | MS.gene039070:intron | 35.0% | |
| GCAACATTAGGATAAGTTGT+AGG | + | chr2.4:26710612-26710631 | None:intergenic | 35.0% | |
| GCAGTTAAAGAATGAAGAAG+AGG | - | chr2.4:26712079-26712098 | MS.gene039070:CDS | 35.0% | |
| GTGTTGCAACGTCAATATAA+AGG | + | chr2.4:26710781-26710800 | None:intergenic | 35.0% | |
| TAAAGAATGAAGAAGAGGAC+TGG | - | chr2.4:26712084-26712103 | MS.gene039070:CDS | 35.0% | |
| TAAATAGACCAAACTTGCCA+TGG | + | chr2.4:26712120-26712139 | None:intergenic | 35.0% | |
| TACCTTCCTACCTTTATGTT+TGG | + | chr2.4:26711151-26711170 | None:intergenic | 35.0% | |
| TCTTGTTGCTCAACCAAATT+TGG | + | chr2.4:26710432-26710451 | None:intergenic | 35.0% | |
| TGATAGAAGAGTAAGAGTGA+GGG | - | chr2.4:26711375-26711394 | MS.gene039070:intron | 35.0% | |
| ! | AAAATGGGATTTTATGGTGG+AGG | - | chr2.4:26710483-26710502 | MS.gene039070:intron | 35.0% |
| ! | ACATATCATCTGGTGATGAA+TGG | + | chr2.4:26712145-26712164 | None:intergenic | 35.0% |
| ! | CATATCATCTGGTGATGAAT+GGG | + | chr2.4:26712144-26712163 | None:intergenic | 35.0% |
| !! | AAATGGGATTTTATGGTGGA+GGG | - | chr2.4:26710484-26710503 | MS.gene039070:intron | 35.0% |
| !!! | ACATGGTTTTGAATTGCCAT+TGG | - | chr2.4:26710729-26710748 | MS.gene039070:intron | 35.0% |
| AATTGCAAAAGCGACTCCAA+TGG | + | chr2.4:26710748-26710767 | None:intergenic | 40.0% | |
| AGCCAAACATAAAGGTAGGA+AGG | - | chr2.4:26711146-26711165 | MS.gene039070:intron | 40.0% | |
| ATAGAAGTGATGAGGGATTG+TGG | + | chr2.4:26710244-26710263 | None:intergenic | 40.0% | |
| CTGATAGAAGAGTAAGAGTG+AGG | - | chr2.4:26711374-26711393 | MS.gene039070:intron | 40.0% | |
| CTGATTTCACCACACAACAA+GGG | - | chr2.4:26710277-26710296 | MS.gene039070:CDS | 40.0% | |
| GAAGAGCCAAACATAAAGGT+AGG | - | chr2.4:26711142-26711161 | MS.gene039070:intron | 40.0% | |
| GACATGTGAAGAAGATCACA+TGG | - | chr2.4:26711420-26711439 | MS.gene039070:intron | 40.0% | |
| GATAGAAGAGTAAGAGTGAG+GGG | - | chr2.4:26711376-26711395 | MS.gene039070:intron | 40.0% | |
| GGAGGGTTTCAGAATTTCAA+TGG | - | chr2.4:26710501-26710520 | MS.gene039070:intron | 40.0% | |
| GGCTTCTTGGATTCCAAATT+TGG | - | chr2.4:26710416-26710435 | MS.gene039070:intron | 40.0% | |
| TCTGATTTCACCACACAACA+AGG | - | chr2.4:26710276-26710295 | MS.gene039070:CDS | 40.0% | |
| TTGACGTTGCAACACAATTG+TGG | - | chr2.4:26710786-26710805 | MS.gene039070:intron | 40.0% | |
| ! | TGAAGAAAACCCTTGTTGTG+TGG | + | chr2.4:26710289-26710308 | None:intergenic | 40.0% |
| !! | GAAGGTACTCAGAAGAAGAA+AGG | - | chr2.4:26711164-26711183 | MS.gene039070:CDS | 40.0% |
| !! | TGCTGATTCATTTCAGTTCC+AGG | - | chr2.4:26711495-26711514 | MS.gene039070:intron | 40.0% |
| GCAACAAGATTTCGCTGTTC+CGG | - | chr2.4:26710443-26710462 | MS.gene039070:intron | 45.0% | |
| GTCACTTGATTGTGACGCTT+CGG | - | chr2.4:26710395-26710414 | MS.gene039070:intron | 45.0% | |
| !!! | CAAATTAATATTAAATTTTA+AGG | - | chr2.4:26711719-26711738 | MS.gene039070:intron | 5.0% |
| !!! | TTTAATATTAATTTGATTTT+TGG | + | chr2.4:26711714-26711733 | None:intergenic | 5.0% |
| ATTGTGACGCTTCGGCTTCT+TGG | - | chr2.4:26710403-26710422 | MS.gene039070:intron | 50.0% | |
| CTCAAGATGTCAAGGGACCT+AGG | + | chr2.4:26710907-26710926 | None:intergenic | 50.0% | |
| GAAGAGTAAGAGTGAGGGGA+AGG | - | chr2.4:26711380-26711399 | MS.gene039070:intron | 50.0% | |
| TCAAGAGGCCATGGCAAGTT+TGG | - | chr2.4:26712109-26712128 | MS.gene039070:CDS | 50.0% | |
| !! | AGAAGAGGACTGGCTTCAAG+AGG | - | chr2.4:26712094-26712113 | MS.gene039070:CDS | 50.0% |
| !! | GGACTGGCTTCAAGAGGCCA+TGG | - | chr2.4:26712100-26712119 | MS.gene039070:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 26710231 | 26712166 | 26710231 | ID=MS.gene039070 |
| chr2.4 | mRNA | 26710231 | 26712166 | 26710231 | ID=MS.gene039070.t1;Parent=MS.gene039070 |
| chr2.4 | exon | 26711753 | 26712166 | 26711753 | ID=MS.gene039070.t1.exon1;Parent=MS.gene039070.t1 |
| chr2.4 | CDS | 26711753 | 26712166 | 26711753 | ID=cds.MS.gene039070.t1;Parent=MS.gene039070.t1 |
| chr2.4 | exon | 26711148 | 26711285 | 26711148 | ID=MS.gene039070.t1.exon2;Parent=MS.gene039070.t1 |
| chr2.4 | CDS | 26711148 | 26711285 | 26711148 | ID=cds.MS.gene039070.t1;Parent=MS.gene039070.t1 |
| chr2.4 | exon | 26710881 | 26711045 | 26710881 | ID=MS.gene039070.t1.exon3;Parent=MS.gene039070.t1 |
| chr2.4 | CDS | 26710881 | 26711045 | 26710881 | ID=cds.MS.gene039070.t1;Parent=MS.gene039070.t1 |
| chr2.4 | exon | 26710231 | 26710314 | 26710231 | ID=MS.gene039070.t1.exon4;Parent=MS.gene039070.t1 |
| chr2.4 | CDS | 26710231 | 26710314 | 26710231 | ID=cds.MS.gene039070.t1;Parent=MS.gene039070.t1 |
| Gene Sequence |
| Protein sequence |