AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039080.t1 MTR_2g068880 91.026 312 26 2 1 310 1 312 0.0 593
MS.gene039080.t1 MTR_2g068920 80.386 311 40 3 1 310 1 291 0.0 510
MS.gene039080.t1 MTR_5g090970 52.000 300 133 8 9 304 6 298 1.06e-94 283
MS.gene039080.t1 MTR_5g090970 51.333 300 134 8 9 304 6 297 2.70e-93 279
MS.gene039080.t1 MTR_5g040420 52.137 234 98 5 18 243 11 238 1.12e-74 234
MS.gene039080.t1 MTR_8g467490 62.500 168 58 3 18 185 11 173 2.07e-72 229
MS.gene039080.t1 MTR_6g011860 57.143 189 59 6 3 185 1 173 4.76e-67 215
MS.gene039080.t1 MTR_4g134460 50.296 169 67 4 17 185 50 201 3.77e-50 172
MS.gene039080.t1 MTR_5g012080 42.254 213 98 6 20 224 7 202 1.47e-49 168
MS.gene039080.t1 MTR_3g088110 54.601 163 60 6 23 185 9 157 7.55e-49 164
MS.gene039080.t1 MTR_4g036030 46.199 171 72 4 20 188 7 159 1.46e-48 166
MS.gene039080.t1 MTR_7g085220 47.929 169 75 5 23 186 10 170 1.54e-48 165
MS.gene039080.t1 MTR_2g079990 52.071 169 65 4 23 191 18 170 2.33e-48 165
MS.gene039080.t1 MTR_8g094580 45.361 194 93 5 23 216 9 189 2.38e-48 163
MS.gene039080.t1 MTR_2g080010 45.930 172 82 4 23 190 17 181 3.84e-48 164
MS.gene039080.t1 MTR_2157s0010 45.783 166 82 4 23 186 10 169 1.04e-47 161
MS.gene039080.t1 MTR_4g089135 46.667 180 77 4 23 188 17 191 1.13e-47 163
MS.gene039080.t1 MTR_8g059170 51.149 174 65 6 23 193 16 172 2.13e-47 162
MS.gene039080.t1 MTR_5g041940 37.546 269 134 8 23 279 5 251 3.33e-47 159
MS.gene039080.t1 MTR_4g101680 44.809 183 79 5 20 198 7 171 3.60e-47 162
MS.gene039080.t1 MTR_4g081870 50.000 164 68 4 23 185 11 161 1.08e-46 159
MS.gene039080.t1 MTR_7g100990 40.097 207 107 5 23 229 13 202 2.32e-46 159
MS.gene039080.t1 MTR_6g012670 36.782 261 141 8 23 277 22 264 6.91e-46 158
MS.gene039080.t1 MTR_6g477900 37.281 228 105 6 23 241 8 206 7.95e-46 155
MS.gene039080.t1 MTR_2g064090 45.783 166 75 3 23 187 8 159 9.66e-46 158
MS.gene039080.t1 MTR_2g079990 47.312 186 76 5 23 191 18 198 2.11e-45 158
MS.gene039080.t1 MTR_3g435150 45.714 175 81 3 17 191 12 172 2.75e-45 155
MS.gene039080.t1 MTR_2g093810 45.238 168 82 3 23 190 16 173 6.53e-45 155
MS.gene039080.t1 MTR_4g108760 44.318 176 83 4 19 194 16 176 1.04e-44 156
MS.gene039080.t1 MTR_5g021710 41.000 200 98 4 20 217 8 189 1.32e-44 155
MS.gene039080.t1 MTR_3g064580 47.273 165 72 3 23 186 8 158 1.73e-44 160
MS.gene039080.t1 MTR_3g096920 49.080 163 69 6 23 185 9 157 1.98e-44 153
MS.gene039080.t1 MTR_7g005280 45.304 181 79 5 13 192 6 167 2.76e-44 152
MS.gene039080.t1 MTR_2g062730 37.903 248 119 9 20 262 10 227 3.34e-44 154
MS.gene039080.t1 MTR_7g085260 45.455 176 85 4 19 194 16 180 5.34e-44 154
MS.gene039080.t1 MTR_6g032770 47.368 171 77 4 17 186 13 171 5.93e-44 154
MS.gene039080.t1 MTR_8g024480 45.238 168 83 4 20 185 15 175 2.12e-43 154
MS.gene039080.t1 MTR_8g076110 44.444 171 75 4 20 188 6 158 2.75e-43 151
MS.gene039080.t1 MTR_5g076850 45.833 168 69 4 23 186 8 157 3.44e-43 157
MS.gene039080.t1 MTR_3g096920 42.708 192 75 6 23 185 9 194 1.30e-42 149
MS.gene039080.t1 MTR_4g098630 39.524 210 104 6 23 231 8 195 2.37e-41 146
MS.gene039080.t1 MTR_6g084430 41.714 175 83 4 17 191 2 157 3.03e-41 146
MS.gene039080.t1 MTR_7g011130 33.929 336 172 11 1 301 1 321 3.23e-41 146
MS.gene039080.t1 MTR_1g096430 43.636 165 74 3 23 185 9 156 5.47e-41 145
MS.gene039080.t1 MTR_3g109340 42.781 187 91 5 5 191 7 177 9.27e-41 145
MS.gene039080.t1 MTR_3g070030 34.576 295 165 11 3 283 1 281 1.15e-40 145
MS.gene039080.t1 MTR_3g109340 41.711 187 92 4 5 191 7 176 1.76e-40 144
MS.gene039080.t1 MTR_4g075980 41.053 190 88 4 1 190 1 166 2.01e-40 143
MS.gene039080.t1 MTR_5g014300 42.857 168 78 3 23 186 8 161 2.40e-40 144
MS.gene039080.t1 MTR_1g090723 45.349 172 77 5 23 192 10 166 3.36e-40 148
MS.gene039080.t1 MTR_8g099750 45.783 166 79 4 23 188 16 170 3.96e-40 140
MS.gene039080.t1 MTR_1g090723 44.186 172 78 4 23 192 10 165 5.24e-40 147
MS.gene039080.t1 MTR_1g090723 44.186 172 78 4 23 192 10 165 6.01e-40 148
MS.gene039080.t1 MTR_2g078700 44.118 170 82 4 17 186 20 176 9.18e-40 143
MS.gene039080.t1 MTR_4g035590 37.619 210 100 7 20 227 8 188 1.68e-39 142
MS.gene039080.t1 MTR_1g008740 40.217 184 94 4 9 191 1 169 2.37e-39 141
MS.gene039080.t1 MTR_1g008740 39.894 188 97 4 5 191 11 183 2.68e-39 142
MS.gene039080.t1 MTR_7g011120 34.532 278 163 7 9 283 1 262 2.69e-39 140
MS.gene039080.t1 MTR_2g064470 46.341 164 71 5 23 186 13 159 4.11e-39 140
MS.gene039080.t1 MTR_0036s0150 44.767 172 77 5 23 192 7 162 4.69e-38 141
MS.gene039080.t1 MTR_3g098810 38.424 203 100 3 23 225 16 193 1.00e-37 134
MS.gene039080.t1 MTR_1g097300 41.279 172 85 4 22 192 20 176 1.26e-37 140
MS.gene039080.t1 MTR_8g063550 40.698 172 86 3 22 192 7 163 1.67e-37 136
MS.gene039080.t1 MTR_2g086880 42.581 155 78 3 22 169 19 169 2.90e-37 140
MS.gene039080.t1 MTR_3g096140 40.116 172 87 3 22 192 8 164 2.90e-37 134
MS.gene039080.t1 MTR_1g069805 36.681 229 115 8 23 248 12 213 2.94e-37 134
MS.gene039080.t1 MTR_8g063550 40.698 172 86 3 22 192 7 163 3.66e-37 137
MS.gene039080.t1 MTR_2g086880 42.581 155 78 3 22 169 19 169 3.76e-37 139
MS.gene039080.t1 MTR_5g069030 43.713 167 77 5 20 185 25 175 5.20e-37 139
MS.gene039080.t1 MTR_8g063550 40.698 172 86 3 22 192 7 163 8.64e-37 136
MS.gene039080.t1 MTR_1g090720 44.242 165 82 3 23 186 44 199 1.01e-36 137
MS.gene039080.t1 MTR_3g096140 40.116 172 87 3 22 192 8 164 1.53e-36 134
MS.gene039080.t1 MTR_3g116070 49.242 132 63 3 23 153 25 153 1.53e-36 134
MS.gene039080.t1 MTR_3g093050 41.011 178 88 5 10 186 12 173 3.19e-36 137
MS.gene039080.t1 MTR_8g093580 39.535 172 88 3 22 192 7 163 3.38e-36 135
MS.gene039080.t1 MTR_3g093050 41.011 178 88 5 10 186 12 173 4.54e-36 137
MS.gene039080.t1 MTR_3g093040 40.476 168 83 6 20 186 108 259 2.44e-34 127
MS.gene039080.t1 MTR_7g097090 41.615 161 76 3 23 183 12 154 4.10e-34 126
MS.gene039080.t1 MTR_3g098810 46.565 131 67 1 23 153 16 143 1.62e-33 121
MS.gene039080.t1 MTR_3g070040 39.053 169 87 4 25 192 12 165 1.07e-32 123
MS.gene039080.t1 MTR_8g023840 47.368 133 64 5 19 149 10 138 2.70e-32 124
MS.gene039080.t1 MTR_4g052620 40.838 191 94 8 18 203 2 178 7.98e-32 119
MS.gene039080.t1 MTR_8g023860 45.522 134 67 5 18 149 10 139 3.34e-29 115
MS.gene039080.t1 MTR_7g105170 33.846 195 111 8 18 207 2 183 9.70e-29 111
MS.gene039080.t1 MTR_2g086690 34.536 194 109 6 23 211 6 186 7.00e-28 108
MS.gene039080.t1 MTR_8g023900 36.313 179 94 6 9 185 1 161 1.23e-26 109
MS.gene039080.t1 MTR_8g023900 38.415 164 80 5 24 185 196 340 2.14e-26 108
MS.gene039080.t1 MTR_3g096140 36.306 157 84 3 37 192 2 143 1.30e-26 107
MS.gene039080.t1 MTR_8g094580 39.860 143 74 4 74 216 5 135 1.12e-24 99.8
MS.gene039080.t1 MTR_8g023930 34.286 210 108 8 18 225 22 203 1.46e-24 103
MS.gene039080.t1 MTR_4g094302 32.934 167 90 5 23 186 13 160 1.59e-24 98.6
MS.gene039080.t1 MTR_4g094302 37.879 132 65 4 23 151 13 130 2.74e-23 94.4
MS.gene039080.t1 MTR_7g070140 50.000 80 38 1 75 154 17 94 2.01e-19 83.2
MS.gene039080.t1 MTR_8g023880 33.690 187 85 9 24 194 10 173 1.36e-18 84.0
MS.gene039080.t1 MTR_7g083330 35.570 149 78 7 9 149 3 141 2.47e-18 81.6
MS.gene039080.t1 MTR_8g093790 30.675 163 77 7 23 185 12 138 4.38e-17 78.2
MS.gene039080.t1 MTR_7g083370 33.333 135 80 6 17 149 7 133 8.40e-17 76.3
MS.gene039080.t1 MTR_1g087190 64.583 48 16 1 23 69 7 54 1.85e-16 72.8
MS.gene039080.t1 MTR_7g083360 34.286 140 84 5 19 156 7 140 3.23e-16 75.1
MS.gene039080.t1 MTR_3g096400 29.940 167 97 6 23 184 9 160 8.62e-16 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039080.t1 AT2G43000 65.829 199 50 5 16 211 13 196 1.69e-85 258
MS.gene039080.t1 AT3G12910 47.973 296 132 9 16 304 16 296 1.53e-82 251
MS.gene039080.t1 AT1G26870 45.486 288 126 7 18 305 13 269 3.14e-70 224
MS.gene039080.t1 AT5G39820 59.777 179 57 4 18 185 17 191 3.58e-69 219
MS.gene039080.t1 AT3G04070 50.303 165 76 3 23 186 12 171 8.99e-54 179
MS.gene039080.t1 AT3G04070 48.023 177 78 4 23 186 12 187 1.36e-52 176
MS.gene039080.t1 AT1G61110 49.444 180 76 4 23 196 18 188 2.02e-51 172
MS.gene039080.t1 AT2G02450 51.829 164 62 4 22 185 52 198 2.09e-51 174
MS.gene039080.t1 AT2G02450 51.829 164 62 4 22 185 52 198 2.39e-51 174
MS.gene039080.t1 AT1G01720 40.541 259 129 8 23 278 9 245 2.62e-50 168
MS.gene039080.t1 AT1G69490 50.307 163 69 3 23 185 11 161 5.61e-50 167
MS.gene039080.t1 AT1G12260 37.786 262 131 7 20 269 7 248 3.23e-49 167
MS.gene039080.t1 AT5G08790 45.098 204 91 8 24 226 10 193 1.68e-48 164
MS.gene039080.t1 AT1G12260 46.067 178 76 4 20 195 7 166 3.64e-48 166
MS.gene039080.t1 AT4G27410 49.432 176 72 5 23 197 16 175 9.26e-48 162
MS.gene039080.t1 AT2G43000 64.885 131 29 4 84 211 2 118 1.41e-47 158
MS.gene039080.t1 AT1G52890 49.714 175 68 4 23 195 16 172 1.82e-47 162
MS.gene039080.t1 AT3G15500 50.292 171 65 4 23 191 16 168 4.12e-47 161
MS.gene039080.t1 AT3G15510 47.059 170 79 4 25 190 21 183 8.80e-47 161
MS.gene039080.t1 AT5G63790 45.312 192 87 7 24 215 53 226 1.28e-46 159
MS.gene039080.t1 AT5G61430 44.385 187 85 5 19 201 15 186 1.46e-46 160
MS.gene039080.t1 AT5G63790 45.312 192 87 7 24 215 63 236 1.64e-46 159
MS.gene039080.t1 AT5G07680 34.767 279 156 7 16 288 11 269 2.88e-46 159
MS.gene039080.t1 AT5G62380 45.238 168 73 3 23 188 9 159 2.91e-46 159
MS.gene039080.t1 AT5G62380 45.238 168 73 3 23 188 9 159 2.91e-46 159
MS.gene039080.t1 AT5G07680 34.909 275 153 7 19 288 2 255 2.93e-46 159
MS.gene039080.t1 AT3G17730 45.833 168 69 4 23 186 8 157 3.22e-46 156
MS.gene039080.t1 AT5G13180 45.405 185 82 4 9 192 1 167 5.65e-46 156
MS.gene039080.t1 AT1G77450 48.000 175 77 6 23 197 12 172 9.21e-46 155
MS.gene039080.t1 AT3G61910 35.887 248 143 6 23 260 13 254 1.21e-45 157
MS.gene039080.t1 AT3G03200 43.915 189 85 5 23 210 8 176 2.29e-45 160
MS.gene039080.t1 AT1G71930 38.189 254 116 8 23 262 11 237 3.34e-45 156
MS.gene039080.t1 AT1G71930 38.189 254 116 8 23 262 11 237 3.34e-45 156
MS.gene039080.t1 AT5G39610 45.304 181 84 4 12 191 10 176 3.58e-45 155
MS.gene039080.t1 AT1G62700 45.614 171 73 4 20 188 7 159 6.83e-45 157
MS.gene039080.t1 AT1G62700 45.614 171 73 4 20 188 7 159 6.83e-45 157
MS.gene039080.t1 AT2G18060 46.023 176 74 5 20 192 9 166 6.94e-45 156
MS.gene039080.t1 AT2G18060 46.023 176 74 5 20 192 9 166 6.94e-45 156
MS.gene039080.t1 AT4G36160 44.865 185 80 5 12 192 2 168 8.30e-45 156
MS.gene039080.t1 AT4G36160 44.865 185 80 5 12 192 2 168 8.30e-45 156
MS.gene039080.t1 AT1G65910 45.902 183 79 5 23 203 8 172 8.50e-45 161
MS.gene039080.t1 AT4G36160 45.455 176 76 4 12 185 6 163 8.59e-45 157
MS.gene039080.t1 AT4G27410 44.000 200 80 6 23 205 16 200 9.34e-45 155
MS.gene039080.t1 AT5G17260 44.253 174 74 4 23 191 8 163 2.32e-44 157
MS.gene039080.t1 AT3G04060 48.235 170 72 5 19 187 19 173 3.01e-44 154
MS.gene039080.t1 AT5G18270 47.929 169 72 5 19 186 20 173 3.22e-44 154
MS.gene039080.t1 AT5G18270 47.337 169 73 5 19 186 20 173 1.45e-43 152
MS.gene039080.t1 AT2G46770 43.860 171 80 4 23 185 18 180 1.77e-43 153
MS.gene039080.t1 AT3G12977 38.723 235 107 9 23 254 20 220 1.89e-43 150
MS.gene039080.t1 AT2G17040 44.118 170 77 3 19 188 4 155 2.44e-43 150
MS.gene039080.t1 AT2G33480 47.590 166 68 4 23 188 17 163 2.63e-43 150
MS.gene039080.t1 AT1G52880 51.220 164 76 3 25 188 21 180 4.71e-43 150
MS.gene039080.t1 AT2G33480 47.590 166 66 4 23 188 17 161 5.68e-43 149
MS.gene039080.t1 AT3G18400 44.571 175 79 5 17 191 2 158 8.66e-43 149
MS.gene039080.t1 AT1G54330 45.783 166 71 3 23 187 8 155 1.12e-42 149
MS.gene039080.t1 AT1G76420 44.767 172 77 5 23 193 24 178 2.56e-42 149
MS.gene039080.t1 AT5G66300 38.318 214 108 5 23 228 14 211 2.94e-42 147
MS.gene039080.t1 AT3G29035 49.045 157 72 4 14 168 16 166 3.15e-42 148
MS.gene039080.t1 AT3G10500 45.614 171 77 4 23 192 11 166 1.21e-41 151
MS.gene039080.t1 AT2G24430 43.182 176 84 5 16 191 12 171 2.22e-41 146
MS.gene039080.t1 AT2G24430 43.182 176 84 5 16 191 12 171 2.22e-41 146
MS.gene039080.t1 AT5G46590 50.000 130 61 2 23 151 8 134 4.45e-41 144
MS.gene039080.t1 AT1G79580 43.030 165 75 4 23 185 19 166 5.80e-41 146
MS.gene039080.t1 AT1G79580 43.030 165 75 4 23 185 19 166 5.80e-41 146
MS.gene039080.t1 AT1G79580 43.030 165 75 4 23 185 19 166 5.80e-41 146
MS.gene039080.t1 AT1G79580 43.030 165 75 4 23 185 19 166 5.80e-41 146
MS.gene039080.t1 AT1G79580 43.030 165 75 4 23 185 19 166 5.80e-41 146
MS.gene039080.t1 AT5G46590 50.000 130 61 2 23 151 8 134 8.39e-41 144
MS.gene039080.t1 AT1G32510 40.556 180 93 3 23 198 8 177 1.30e-40 143
MS.gene039080.t1 AT4G17980 44.848 165 79 4 23 186 8 161 1.80e-40 142
MS.gene039080.t1 AT5G04410 46.784 171 75 5 23 192 11 166 2.08e-40 148
MS.gene039080.t1 AT3G15170 41.989 181 91 4 16 194 15 183 2.88e-40 143
MS.gene039080.t1 AT4G17980 44.848 165 79 4 23 186 8 161 3.62e-40 142
MS.gene039080.t1 AT3G10480 43.636 165 77 4 23 186 29 178 5.47e-40 145
MS.gene039080.t1 AT1G56010 44.571 175 80 5 23 193 21 182 7.65e-40 142
MS.gene039080.t1 AT3G10480 43.636 165 78 4 23 186 29 179 7.66e-40 145
MS.gene039080.t1 AT4G10350 39.899 198 87 6 20 215 9 176 8.66e-40 142
MS.gene039080.t1 AT1G32770 41.040 173 89 4 23 190 18 182 1.28e-39 142
MS.gene039080.t1 AT1G33280 43.030 165 74 4 23 185 10 156 1.51e-38 138
MS.gene039080.t1 AT1G34180 42.105 171 83 4 23 192 18 173 2.14e-38 141
MS.gene039080.t1 AT3G10490 41.818 165 81 5 23 186 29 179 2.65e-38 135
MS.gene039080.t1 AT1G34190 42.690 171 82 4 23 192 18 173 4.34e-38 142
MS.gene039080.t1 AT2G27300 46.094 128 65 1 22 149 15 138 7.25e-38 137
MS.gene039080.t1 AT1G34180 42.105 171 83 4 23 192 18 173 8.01e-38 141
MS.gene039080.t1 AT3G10490 41.818 165 81 5 23 186 29 179 1.93e-37 139
MS.gene039080.t1 AT4G35580 44.379 169 77 6 18 185 7 159 2.09e-37 140
MS.gene039080.t1 AT4G35580 44.379 169 77 6 18 185 7 159 2.14e-37 140
MS.gene039080.t1 AT4G35580 44.379 169 77 6 18 185 7 159 2.26e-37 139
MS.gene039080.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.32e-37 138
MS.gene039080.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.32e-37 138
MS.gene039080.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.32e-37 138
MS.gene039080.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.32e-37 138
MS.gene039080.t1 AT5G09330 39.181 171 88 3 23 192 8 163 4.32e-37 138
MS.gene039080.t1 AT5G53950 42.222 180 91 5 15 194 12 178 8.31e-37 135
MS.gene039080.t1 AT3G44290 42.969 128 69 1 22 149 15 138 1.10e-36 131
MS.gene039080.t1 AT5G22290 43.750 128 68 1 22 149 22 145 3.82e-36 133
MS.gene039080.t1 AT3G44290 42.969 128 69 1 22 149 15 138 7.02e-36 132
MS.gene039080.t1 AT1G33060 48.485 132 62 3 20 150 24 150 8.09e-36 136
MS.gene039080.t1 AT1G33060 48.485 132 62 3 20 150 24 150 8.25e-36 136
MS.gene039080.t1 AT1G34180 39.344 183 83 4 23 192 18 185 9.46e-36 134
MS.gene039080.t1 AT1G34180 39.344 183 83 4 23 192 18 185 2.96e-35 134
MS.gene039080.t1 AT5G64060 38.788 165 85 3 23 186 8 157 1.62e-34 129
MS.gene039080.t1 AT3G10480 36.364 198 78 4 23 186 29 212 2.60e-34 131
MS.gene039080.t1 AT3G49530 45.390 141 72 4 11 150 4 140 1.52e-33 127
MS.gene039080.t1 AT5G24590 48.855 131 62 3 22 150 13 140 2.15e-33 127
MS.gene039080.t1 AT3G49530 45.390 141 72 4 11 150 4 140 3.87e-33 127
MS.gene039080.t1 AT4G28530 41.111 180 70 6 23 185 12 172 4.34e-31 119
MS.gene039080.t1 AT5G04395 39.333 150 77 3 14 151 22 169 9.37e-31 114
MS.gene039080.t1 AT3G44350 33.878 245 132 11 24 261 8 229 8.38e-29 111
MS.gene039080.t1 AT3G12977 38.462 182 76 8 76 254 19 167 9.63e-29 110
MS.gene039080.t1 AT5G61430 43.182 132 58 3 74 201 5 123 9.65e-29 111
MS.gene039080.t1 AT5G64530 34.104 173 96 6 23 192 5 162 4.10e-28 107
MS.gene039080.t1 AT5G22380 30.802 237 140 8 18 243 3 226 1.58e-27 107
MS.gene039080.t1 AT1G32870 39.306 173 85 5 23 192 12 167 7.26e-27 110
MS.gene039080.t1 AT1G32870 39.306 173 85 5 23 192 12 167 7.50e-27 110
MS.gene039080.t1 AT1G32870 39.306 173 85 5 23 192 48 203 1.09e-26 110
MS.gene039080.t1 AT5G64530 40.000 130 63 4 23 152 5 119 9.69e-26 100
MS.gene039080.t1 AT3G44350 40.141 142 74 4 24 159 8 144 2.41e-25 99.8
MS.gene039080.t1 AT4G01550 41.667 132 74 3 22 151 5 135 2.80e-24 102
MS.gene039080.t1 AT1G56010 43.802 121 53 3 76 193 7 115 6.47e-24 98.6
MS.gene039080.t1 AT4G01540 42.105 133 73 4 22 151 5 136 6.43e-23 98.2
MS.gene039080.t1 AT4G01540 42.105 133 73 4 22 151 5 136 6.70e-23 98.2
MS.gene039080.t1 AT4G01540 42.105 133 73 4 22 151 5 136 7.88e-23 98.2
MS.gene039080.t1 AT4G01540 42.105 133 73 4 22 151 5 136 8.17e-23 98.6
MS.gene039080.t1 AT4G01520 40.458 131 74 4 24 151 7 136 1.03e-22 96.3
MS.gene039080.t1 AT2G33480 44.348 115 49 3 74 188 7 106 1.39e-22 94.0
MS.gene039080.t1 AT4G10350 38.298 141 58 4 75 215 18 129 3.76e-21 91.7
MS.gene039080.t1 AT1G02230 40.602 133 72 5 24 153 6 134 7.80e-20 89.0
MS.gene039080.t1 AT1G02250 40.310 129 70 5 24 149 6 130 2.82e-19 87.4
MS.gene039080.t1 AT3G04420 38.760 129 72 4 24 149 6 130 1.30e-18 84.7
MS.gene039080.t1 AT3G04420 38.760 129 72 4 24 149 6 130 3.71e-18 84.0
MS.gene039080.t1 AT4G28530 43.925 107 41 3 23 112 12 116 9.16e-18 82.4
MS.gene039080.t1 AT5G50820 35.556 135 72 5 23 154 19 141 1.54e-16 77.0
MS.gene039080.t1 AT2G18060 42.553 94 36 3 100 192 2 78 3.19e-16 77.8
MS.gene039080.t1 AT5G14000 29.677 155 99 4 14 165 7 154 3.36e-16 75.1
MS.gene039080.t1 AT5G14000 29.870 154 98 4 14 164 7 153 2.48e-15 73.9
MS.gene039080.t1 AT1G02220 37.209 129 71 5 24 149 6 127 2.25e-14 73.6
MS.gene039080.t1 AT1G01010 35.000 160 88 8 24 170 6 162 5.16e-14 72.4
MS.gene039080.t1 AT3G56530 30.882 136 88 2 23 156 54 185 5.26e-13 68.9
MS.gene039080.t1 AT3G10490 36.957 92 44 4 95 186 2 79 4.39e-12 66.2
MS.gene039080.t1 AT3G10490 36.957 92 44 4 95 186 2 79 4.39e-12 66.2

Find 48 sgRNAs with CRISPR-Local

Find 76 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTATTATCATTTGATAAT+TGG 0.114896 2.4:-26608440 MS.gene039080:CDS
CAACAAACATATATCAATTT+TGG 0.187147 2.4:-26608633 MS.gene039080:CDS
TATACGACATGCAGGAAATT+TGG 0.191903 2.4:-26608791 MS.gene039080:intron
GAGTCACTGGCTCTGGATTC+TGG 0.244802 2.4:-26609244 MS.gene039080:CDS
GTTATTATCATTTGATAATT+GGG 0.315345 2.4:-26608439 MS.gene039080:CDS
CATTAATTTGTTGAGGTTGA+TGG 0.315956 2.4:+26608505 None:intergenic
CCAGAGCCAGTGACTCTATT+TGG 0.333205 2.4:+26609251 None:intergenic
GATGATGATGTTCCACTTCC+TGG 0.336439 2.4:-26610199 MS.gene039080:CDS
ATGCATCATCCAATCAGTTT+TGG 0.355638 2.4:+26609112 None:intergenic
TTGATAAGATCAATAGCAAT+AGG 0.382635 2.4:+26610109 None:intergenic
GCCAAAGAGGAAGAAAATAT+AGG 0.410785 2.4:-26609286 MS.gene039080:CDS
TAGTAGAATGAATAGCAATA+TGG 0.412099 2.4:-26608670 MS.gene039080:CDS
CCAAATAGAGTCACTGGCTC+TGG 0.412912 2.4:-26609251 MS.gene039080:CDS
TTCATGAATGGTTTGACGCT+TGG 0.438624 2.4:+26608698 None:intergenic
ATATCTACAAATATGATCCT+TGG 0.441210 2.4:-26610078 MS.gene039080:CDS
TCTGGATTCTGGAAAGCAAC+TGG 0.467422 2.4:-26609233 MS.gene039080:CDS
TTTGATAATTGGGATGAGCT+TGG 0.467447 2.4:-26608429 MS.gene039080:CDS
GACAAAGCAATATACTCAAA+TGG 0.469362 2.4:-26609206 MS.gene039080:CDS
GGTTTGACGCTTGGTAGCTA+AGG 0.470329 2.4:+26608707 None:intergenic
TATCTACAAATATGATCCTT+GGG 0.485955 2.4:-26610077 MS.gene039080:CDS
AGAATTACTATTTACAAACT+AGG 0.491310 2.4:+26608378 None:intergenic
GTAAAGGCACCAAAACTGAT+TGG 0.491861 2.4:-26609121 MS.gene039080:CDS
GTTTACTATCGTGGTAGTGC+TGG 0.494944 2.4:-26609143 MS.gene039080:CDS
AAATATACCAGGAGCAGAGA+AGG 0.498611 2.4:-26609324 MS.gene039080:CDS
TAACCTTCCTTCTCTGCTCC+TGG 0.500000 2.4:+26609317 None:intergenic
CTGATTGTAGAATTATTGAC+TGG 0.519068 2.4:+26608576 None:intergenic
CCTCATTGTGATGATGCTCA+TGG 0.528975 2.4:+26608604 None:intergenic
GTAACAAGTTCTTCATCTGT+AGG 0.530457 2.4:+26610163 None:intergenic
ATATACTCAAATGGAGGAGA+AGG 0.533042 2.4:-26609197 MS.gene039080:CDS
TGGAATCTGAATCCAGGAAG+TGG 0.538809 2.4:+26610187 None:intergenic
AAAACACTTGTTTACTATCG+TGG 0.541680 2.4:-26609152 MS.gene039080:CDS
CAAGTTCTTCATCTGTAGGA+TGG 0.549129 2.4:+26610167 None:intergenic
TATCGTGGTAGTGCTGGTAA+AGG 0.553822 2.4:-26609137 MS.gene039080:CDS
GTTTGACGCTTGGTAGCTAA+GGG 0.553957 2.4:+26608708 None:intergenic
GTTAGACCAAATAGAGTCAC+TGG 0.561770 2.4:-26609257 MS.gene039080:CDS
GTAGGATGGAATCTGAATCC+AGG 0.567210 2.4:+26610181 None:intergenic
GACATACTTGGAAGATCCCA+AGG 0.569277 2.4:+26610061 None:intergenic
ATTCTACAATCAGTGATCAA+AGG 0.581662 2.4:-26608566 MS.gene039080:CDS
GGAGAAGGAAATGATTGTGT+TGG 0.583944 2.4:-26609182 MS.gene039080:CDS
ATCAGCATCATTCTTAGCAT+AGG 0.603706 2.4:+26609046 None:intergenic
AGAGAAGATGGGTATGAACG+AGG 0.606606 2.4:-26610254 None:intergenic
ATACCAGGAGCAGAGAAGGA+AGG 0.629648 2.4:-26609320 MS.gene039080:CDS
TGTGTTACATTAATTTGTTG+AGG 0.634779 2.4:+26608498 None:intergenic
TTAAAAGAAATGTATCACAA+AGG 0.637410 2.4:-26608752 MS.gene039080:CDS
AAAGCAATATACTCAAATGG+AGG 0.648134 2.4:-26609203 MS.gene039080:CDS
TATGCAGAAGTAAATATACC+AGG 0.662988 2.4:-26609335 MS.gene039080:intron
CCATGAGCATCATCACAATG+AGG 0.679725 2.4:-26608604 MS.gene039080:CDS
TATGAACGAGGATTTCAACA+TGG 0.688452 2.4:-26610242 MS.gene039080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATAAAAAATAAATAAATA+GGG - chr2.4:26608732-26608751 MS.gene039080:CDS 0.0%
!! ACAAAAAAAGAATAAAAAAA+AGG + chr2.4:26608614-26608633 None:intergenic 10.0%
!! CTATTGTAAAAATAAGAATA+GGG - chr2.4:26608706-26608725 MS.gene039080:CDS 15.0%
!! TATTGTAAAAATAAGAATAG+GGG - chr2.4:26608707-26608726 MS.gene039080:CDS 15.0%
!! TCTATTGTAAAAATAAGAAT+AGG - chr2.4:26608705-26608724 MS.gene039080:CDS 15.0%
!!! AGTTATTATCATTTGATAAT+TGG - chr2.4:26610196-26610215 MS.gene039080:CDS 15.0%
!!! GTTATTATCATTTGATAATT+GGG - chr2.4:26610197-26610216 MS.gene039080:CDS 15.0%
!!! TTATTTTTCCTTTTCATTAT+AGG - chr2.4:26609248-26609267 MS.gene039080:CDS 15.0%
!! ACATTATAGCTTATATATAG+AGG - chr2.4:26609051-26609070 MS.gene039080:CDS 20.0%
!! CTTGTGTTAATTAAATTAGA+TGG + chr2.4:26608761-26608780 None:intergenic 20.0%
!! TATAGTTACCTATAATGAAA+AGG + chr2.4:26609259-26609278 None:intergenic 20.0%
!! TGAAAAGGAAAAATAAAGAA+AGG + chr2.4:26609244-26609263 None:intergenic 20.0%
!! TTAAAAGAAATGTATCACAA+AGG - chr2.4:26609884-26609903 MS.gene039080:intron 20.0%
!!! CAACAAACATATATCAATTT+TGG - chr2.4:26610003-26610022 MS.gene039080:intron 20.0%
!!! TAACACAATCTTCAAATTTT+TGG - chr2.4:26610154-26610173 MS.gene039080:CDS 20.0%
! ATAAATTAGAGAGACATACT+TGG + chr2.4:26608590-26608609 None:intergenic 25.0%
! ATATCTACAAATATGATCCT+TGG - chr2.4:26608558-26608577 MS.gene039080:CDS 25.0%
! ATCATTAGAACAAGTTTAAG+AGG + chr2.4:26609820-26609839 None:intergenic 25.0%
! ATTTGCACTATGTAAAAAAG+TGG + chr2.4:26609211-26609230 None:intergenic 25.0%
! TAGTAGAATGAATAGCAATA+TGG - chr2.4:26609966-26609985 MS.gene039080:intron 25.0%
! TATCTACAAATATGATCCTT+GGG - chr2.4:26608559-26608578 MS.gene039080:CDS 25.0%
! TTGATAAGATCAATAGCAAT+AGG + chr2.4:26608530-26608549 None:intergenic 25.0%
! TTTAATTAACACAAGCTAGA+AGG - chr2.4:26608766-26608785 MS.gene039080:CDS 25.0%
!!! AATGTTTGTTTTGACATCAA+TGG + chr2.4:26609569-26609588 None:intergenic 25.0%
!!! ACTATTACTTTTGTAGTAGA+TGG + chr2.4:26609030-26609049 None:intergenic 25.0%
!!! TGTGTTACATTAATTTGTTG+AGG + chr2.4:26610141-26610160 None:intergenic 25.0%
AAAACACTTGTTTACTATCG+TGG - chr2.4:26609484-26609503 MS.gene039080:intron 30.0%
AAAGCAATATACTCAAATGG+AGG - chr2.4:26609433-26609452 MS.gene039080:intron 30.0%
ATAGATGGTTTGATCGATTA+TGG - chr2.4:26608829-26608848 MS.gene039080:intron 30.0%
ATTCTACAATCAGTGATCAA+AGG - chr2.4:26610070-26610089 MS.gene039080:CDS 30.0%
CTGATTGTAGAATTATTGAC+TGG + chr2.4:26610063-26610082 None:intergenic 30.0%
CTTAGCTAGCAATATATTCA+AGG - chr2.4:26608863-26608882 MS.gene039080:intron 30.0%
GAACAAGTTTAAGAGGAAAA+AGG + chr2.4:26609813-26609832 None:intergenic 30.0%
GACAAAGCAATATACTCAAA+TGG - chr2.4:26609430-26609449 MS.gene039080:intron 30.0%
TATGCAGAAGTAAATATACC+AGG - chr2.4:26609301-26609320 MS.gene039080:CDS 30.0%
TATTTGCATGCAGAAATAGA+TGG - chr2.4:26608814-26608833 MS.gene039080:intron 30.0%
TGTATCACAAAGGAAAAACA+TGG - chr2.4:26609894-26609913 MS.gene039080:intron 30.0%
! TCCTATATTTTCTTCCTCTT+TGG + chr2.4:26609354-26609373 None:intergenic 30.0%
! TCTACTACTCTTTTCATGAA+TGG + chr2.4:26609953-26609972 None:intergenic 30.0%
!! CATTAATTTGTTGAGGTTGA+TGG + chr2.4:26610134-26610153 None:intergenic 30.0%
ATATACTCAAATGGAGGAGA+AGG - chr2.4:26609439-26609458 MS.gene039080:intron 35.0%
ATCAGCATCATTCTTAGCAT+AGG + chr2.4:26609593-26609612 None:intergenic 35.0%
GCCAAAGAGGAAGAAAATAT+AGG - chr2.4:26609350-26609369 MS.gene039080:intron 35.0%
GTAACAAGTTCTTCATCTGT+AGG + chr2.4:26608476-26608495 None:intergenic 35.0%
TATACGACATGCAGGAAATT+TGG - chr2.4:26609845-26609864 MS.gene039080:intron 35.0%
TATGAACGAGGATTTCAACA+TGG - chr2.4:26608394-26608413 MS.gene039080:CDS 35.0%
! ATGCATCATCCAATCAGTTT+TGG + chr2.4:26609527-26609546 None:intergenic 35.0%
! GATTTTTCTATACGACATGC+AGG - chr2.4:26609837-26609856 MS.gene039080:intron 35.0%
! TTTGATAATTGGGATGAGCT+TGG - chr2.4:26610207-26610226 MS.gene039080:CDS 35.0%
!! GTTTTGACATCAATGGTTGA+TGG + chr2.4:26609562-26609581 None:intergenic 35.0%
!!! GGTTACTTTTTTTGCCAAAG+AGG - chr2.4:26609337-26609356 MS.gene039080:intron 35.0%
AAATATACCAGGAGCAGAGA+AGG - chr2.4:26609312-26609331 MS.gene039080:CDS 40.0%
CAAGTTCTTCATCTGTAGGA+TGG + chr2.4:26608472-26608491 None:intergenic 40.0%
GGAGAAGGAAATGATTGTGT+TGG - chr2.4:26609454-26609473 MS.gene039080:intron 40.0%
GTTAGACCAAATAGAGTCAC+TGG - chr2.4:26609379-26609398 MS.gene039080:intron 40.0%
TTCATGAATGGTTTGACGCT+TGG + chr2.4:26609941-26609960 None:intergenic 40.0%
!! GTAAAGGCACCAAAACTGAT+TGG - chr2.4:26609515-26609534 MS.gene039080:intron 40.0%
CCATGAGCATCATCACAATG+AGG - chr2.4:26610032-26610051 MS.gene039080:intron 45.0%
GACATACTTGGAAGATCCCA+AGG + chr2.4:26608578-26608597 None:intergenic 45.0%
GTAGGATGGAATCTGAATCC+AGG + chr2.4:26608458-26608477 None:intergenic 45.0%
TGGAATCTGAATCCAGGAAG+TGG + chr2.4:26608452-26608471 None:intergenic 45.0%
! CCTCATTGTGATGATGCTCA+TGG + chr2.4:26610035-26610054 None:intergenic 45.0%
! GATGATGATGTTCCACTTCC+TGG - chr2.4:26608437-26608456 MS.gene039080:CDS 45.0%
! GTTTACTATCGTGGTAGTGC+TGG - chr2.4:26609493-26609512 MS.gene039080:intron 45.0%
! GTTTGACGCTTGGTAGCTAA+GGG + chr2.4:26609931-26609950 None:intergenic 45.0%
! TCTGGATTCTGGAAAGCAAC+TGG - chr2.4:26609403-26609422 MS.gene039080:intron 45.0%
!! TATCGTGGTAGTGCTGGTAA+AGG - chr2.4:26609499-26609518 MS.gene039080:intron 45.0%
!! AATTAAAGAAATATAATATT+CGG - chr2.4:26609142-26609161 MS.gene039080:CDS 5.0%
!! ATAAAAAATTTGTAAAAATT+TGG + chr2.4:26609656-26609675 None:intergenic 5.0%
!! GTAATAAAAAATAAATAAAT+AGG - chr2.4:26608731-26608750 MS.gene039080:CDS 5.0%
ATACCAGGAGCAGAGAAGGA+AGG - chr2.4:26609316-26609335 MS.gene039080:CDS 50.0%
CCAGAGCCAGTGACTCTATT+TGG + chr2.4:26609388-26609407 None:intergenic 50.0%
TAACCTTCCTTCTCTGCTCC+TGG + chr2.4:26609322-26609341 None:intergenic 50.0%
! GGTTTGACGCTTGGTAGCTA+AGG + chr2.4:26609932-26609951 None:intergenic 50.0%
!! CCAAATAGAGTCACTGGCTC+TGG - chr2.4:26609385-26609404 MS.gene039080:intron 50.0%
!! GAGTCACTGGCTCTGGATTC+TGG - chr2.4:26609392-26609411 MS.gene039080:intron 55.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 26608389 26610269 26608389 ID=MS.gene039080
chr2.4 mRNA 26608389 26610269 26608389 ID=MS.gene039080.t1;Parent=MS.gene039080
chr2.4 exon 26610068 26610269 26610068 ID=MS.gene039080.t1.exon1;Parent=MS.gene039080.t1
chr2.4 CDS 26610068 26610269 26610068 ID=cds.MS.gene039080.t1;Parent=MS.gene039080.t1
chr2.4 exon 26609031 26609350 26609031 ID=MS.gene039080.t1.exon2;Parent=MS.gene039080.t1
chr2.4 CDS 26609031 26609350 26609031 ID=cds.MS.gene039080.t1;Parent=MS.gene039080.t1
chr2.4 exon 26608389 26608799 26608389 ID=MS.gene039080.t1.exon3;Parent=MS.gene039080.t1
chr2.4 CDS 26608389 26608799 26608389 ID=cds.MS.gene039080.t1;Parent=MS.gene039080.t1
Gene Sequence

>MS.gene039080

ATGGGTATGAACGAGGATTTCAACATGGATAATGAATATGTCGCAGATGATGATGATGTTCCACTTCCTGGATTCAGATTCCATCCTACAGATGAAGAACTTGTTACTTTTTATCTTAGAAGAAAACTTGACAAGAAACCTATTGCTATTGATCTTATCAAACAAATTGATATCTACAAATATGATCCTTGGGATCTTCCAAGTATGTCTCTCTAATTTATACCTTTTTTTTATTCTTTTTTTGTATTTATTGATATTGTTCTATCAGTTTATCTTACAAGTATTGAAGATTAATTAATTCTTACAAGATGAAATCTCTATTGTAAAAATAAGAATAGGGGTGTAATAAAAAATAAATAAATAGGGTTTCCATCTAATTTAATTAACACAAGCTAGAAGGAAGAATGAAAAAAAAATTGAGATGATATTTGCATGCAGAAATAGATGGTTTGATCGATTATGGCATACGTATATCTTAGCTAGCAATATATTCAAGGTTATTTGTTGTAGTCTTTATATTCTATATTTCAGAAGATTTTGATTTTTTTTATAAAATAAAGTATTCTGACGAATATAAATTAGCAATAAAAATTTAAAAATCAAAACATGAAATTCATTTCTAATTTCATCATGAGCATCCATCTACTACAAAAGTAATAGTAACATTATAGCTTATATATAGAGGATTTTGTGCAGACATGTAAAAAGAAGAAAGTCATAGAGTAACAATATAGCTTAATATTTTCTTTAACTAATTAAAGAAATATAATATTCGGTGTAAAATTTTATGCAACAACTACACTGAAAATATATTCTAATCCACTTTTTTACATAGTGCAAATTTTGTTTTGTCCTTTCTTTATTTTTCCTTTTCATTATAGGTAACTATACTAATTGCTTAGTTACATGCATTATGCAGAAGTAAATATACCAGGAGCAGAGAAGGAAGGTTACTTTTTTTGCCAAAGAGGAAGAAAATATAGGAACAGCGTTAGACCAAATAGAGTCACTGGCTCTGGATTCTGGAAAGCAACTGGAATAGACAAAGCAATATACTCAAATGGAGGAGAAGGAAATGATTGTGTTGGACTCAAAAAAACACTTGTTTACTATCGTGGTAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGTCTTCCATCAACCATTGATGTCAAAACAAACATTTCCTATGCTAAGAATGATGCTGATTGTGCTCATGAAGCTGTAAATAACTTACATATGAGCTATACCAAATTTTTACAAATTTTTTATGCTACAATATTTGTTCACAAGCACATTATTAATTTCTCTCTTACTTTTCAGTCACATTTTTCTTGATATGTACATTTGCACTAGAAAATAAATTATCTAGCAATGAGAGTTTCATATTATGATTCTTAGTTAAACCTTTTTCCTCTTAAACTTGTTCTAATGATTTTTCTATACGACATGCAGGAAATTTGGACATTGTGTAGAATTTTTAAAAGAAATGTATCACAAAGGAAAAACATGGTAGATGTGAAACCCTTAGCTACCAAGCGTCAAACCATTCATGAAAAGAGTAGTAGAATGAATAGCAATATGGAGTTCAACACAAATCAACAAACATATATCAATTTTGGTACAAGCCATGAGCATCATCACAATGAGGATAAACCAGTCAATAATTCTACAATCAGTGATCAAAGGAATCAATTTCATGTAGATCAATTGAGCTCTTCAGTAGACCATCAACCTCAACAAATTAATGTAACACAATCTTCAAATTTTTGGATTAAGCAAGCTGCTAATGAGTTATTATCATTTGATAATTGGGATGAGCTTGGATCAGTTGTGAACTTTGTTTCACGTTCACCTAGTTTGTAA
Protein sequence

>MS.gene039080.t1

MGMNEDFNMDNEYVADDDDVPLPGFRFHPTDEELVTFYLRRKLDKKPIAIDLIKQIDIYKYDPWDLPKVNIPGAEKEGYFFCQRGRKYRNSVRPNRVTGSGFWKATGIDKAIYSNGGEGNDCVGLKKTLVYYRGSAGKGTKTDWMMHEFRLPSTIDVKTNISYAKNDADCAHEAEIWTLCRIFKRNVSQRKNMVDVKPLATKRQTIHEKSSRMNSNMEFNTNQQTYINFGTSHEHHHNEDKPVNNSTISDQRNQFHVDQLSSSVDHQPQQINVTQSSNFWIKQAANELLSFDNWDELGSVVNFVSRSPSL