AlfalfaGEDB | MS.gene039327

M. sativa cultivar XinJiangDaYe / MS.gene039327

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039327.t1	XP_013464514.1	95.3	789	37	0	1	789	1	789	0.00E+00	1453.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039327.t1	Q8RWZ5	57.2	822	304	8	12	789	4	821	1.2e-250	867.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039327.t1	A0A072V924	95.3	789	37	0	1	789	1	789	0.0e+00	1453.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039327.t1	MTR_2g073250	95.437	789	36	0	1	789	1	789	0.0	1533
MS.gene039327.t1	MTR_2g080080	83.586	792	122	5	1	789	1	787	0.0	1345
MS.gene039327.t1	MTR_2g080100	81.345	788	105	5	6	789	7	756	0.0	1307
MS.gene039327.t1	MTR_3g107070	76.309	802	151	10	23	789	1	798	0.0	1228
MS.gene039327.t1	MTR_2g080090	78.137	773	130	4	1	772	1	735	0.0	1206
MS.gene039327.t1	MTR_1g012550	61.585	833	261	16	5	789	4	825	0.0	981
MS.gene039327.t1	MTR_2g103810	51.572	795	341	11	32	789	28	815	0.0	782
MS.gene039327.t1	MTR_3g072800	35.373	817	426	18	37	769	28	826	3.84e-143	443
MS.gene039327.t1	MTR_6g043790	38.566	739	379	25	77	766	64	776	5.19e-137	426
MS.gene039327.t1	MTR_6g043510	38.095	756	394	27	77	782	59	790	3.70e-133	416

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene039327.t1	AT4G32300	56.813	822	307	10	12	789	4	821	0.0	909
MS.gene039327.t1	AT5G35370	34.035	808	446	26	27	765	23	812	2.10e-138	431
MS.gene039327.t1	AT5G24080	34.035	808	404	27	43	758	33	803	8.10e-134	419
MS.gene039327.t1	AT2G19130	36.780	764	405	22	56	766	38	776	1.14e-130	409
MS.gene039327.t1	AT1G34300	35.815	779	424	29	58	788	44	794	1.85e-126	398
MS.gene039327.t1	AT5G24080	35.209	693	364	22	134	758	1	676	1.51e-121	383
MS.gene039327.t1	AT5G24080	35.209	693	364	22	134	758	1	676	1.51e-121	383
MS.gene039327.t1	AT4G00340	34.845	772	401	27	51	758	28	761	2.84e-115	369
MS.gene039327.t1	AT4G00340	34.245	768	390	26	51	758	28	740	1.57e-112	361
MS.gene039327.t1	AT5G20050	44.054	370	186	6	420	768	31	400	5.87e-95	304

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Find 144 sgRNAs with CRISPR-Local

Find 175 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGGGGATAAAACAT+TGG	0.545486	2.2:-19323330	None:intergenic
AAAAGTGATGTATACAGTTA+TGG	0.367740	2.2:-19321330	MS.gene039327:CDS
AAACACGAAACTATCGTAAT+TGG	0.292609	2.2:+19323027	None:intergenic
AAACTATCGTAATTGGTAAC+AGG	0.395111	2.2:+19323034	None:intergenic
AAACTCTATTCTTTGAGAGG+AGG	0.590843	2.2:+19323161	None:intergenic
AAACTTGGTGGTGTCATTGA+CGG	0.523719	2.2:+19323117	None:intergenic
AAAGTGATGTATACAGTTAT+GGG	0.404935	2.2:-19321329	MS.gene039327:CDS
AAATACAATTAGCAAAGTAA+TGG	0.545228	2.2:-19322951	MS.gene039327:CDS
AAATCTGATGACGCTGATTC+TGG	0.310400	2.2:-19322131	MS.gene039327:CDS
AACAGTTCCCTGAACTTGTA+TGG	0.464385	2.2:+19322183	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACACGAAACTATCGTAAT+TGG	+	chr2.2:19321279-19321298	None:intergenic	30.0%
AAGCTTCAGTAAGAAGTTAT+TGG	+	chr2.2:19322431-19322450	None:intergenic	30.0%
AATAACTTCTTACTGAAGCT+TGG	-	chr2.2:19322430-19322449	MS.gene039327:CDS	30.0%
AATATCACACAAACACAGTT+TGG	+	chr2.2:19321051-19321070	None:intergenic	30.0%
AGAACATAGGTCAAGTTATT+TGG	+	chr2.2:19321521-19321540	None:intergenic	30.0%
AGAAGTTGTTCAAATGTTAG+AGG	-	chr2.2:19323227-19323246	MS.gene039327:CDS	30.0%
AGAATACCACAAGATTATTG+TGG	-	chr2.2:19321836-19321855	MS.gene039327:CDS	30.0%
ATAAAACCTGGTTTACAACT+AGG	+	chr2.2:19321935-19321954	None:intergenic	30.0%
ATAGCATTAGGAACAGAAAA+AGG	-	chr2.2:19322736-19322755	MS.gene039327:CDS	30.0%
ATCATCTTAAAAGCAAAACG+AGG	+	chr2.2:19323072-19323091	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	19320978	19323347	19320978	ID=MS.gene039327
chr2.2	mRNA	19320978	19323347	19320978	ID=MS.gene039327.t1;Parent=MS.gene039327
chr2.2	exon	19320978	19323347	19320978	ID=MS.gene039327.t1.exon1;Parent=MS.gene039327.t1
chr2.2	CDS	19320978	19323347	19320978	ID=cds.MS.gene039327.t1;Parent=MS.gene039327.t1

Gene Sequence

>MS.gene039327

ATGGGGATAAAACATTGGTTTTTATCGAATATTGTTGTTGTTCTGTCCATCTCCCTCCTCTTGATCATGTCCAAACTGTGTTTGTGTGATATTCAATATATTGGCACAATCTCACCAGGGATGGAAGGTTCTCAAATGAATTTCAACGACAAAGACTTCAAGTTCCTCCTCTCAAAGAATAGAGTTTTTGCTTTTGGTTTTGTCGCTGCCGTCAATGACACCACCAAGTTTTTACTGGCAATCGTCCACACGGCTAGCTCCACCATGCTTTGGGCTGCTAATAGAGCATTACCTGTTACCAATTACGATAGTTTCGTGTTTGATAAAAACGGAAATGCCTTTTTACGGAAAGATGGAACTGTGATCTGGTCTACAAATACAATTAGCAAAGTAATGGAATTGCAAGACAATGGAAACTTGGTTTTGCTTGGTGACGACGACAATGATACGGTAATTTGGCAAAGTTTTAGTTATCCAACTGATACTTTGATGCCTTCGCAAGATTTCAAAGAGGGAATGAAACTTACCAGTGAACCTAGTCCAAATAACTTGACCTATGTTCTTGAGATCAAATCAGGTAATGTTATTCTTTCAGCTGGTTACAAAACTCCACAGACTTATTGGACTATGCAGAAGGATAACCGTAAAATCATCGATAAGGTCGGCCATGTTGTGGCTTTTGCAAATCTTAGTGACAATTCTTGGAGGTTCTATGATAACAATAAGTCTTTGTTATGGCAATTTATTTTCTCTGCTGATGGAGGCATAAATGGAAGCTGGATTGCAGTTTTAGGAAGGGATGGTGTCATTACTTTCTCGAATCTCAACGGTGGTGGATCAAACGGTGATTCTTCAACGAGAATACCACAAGATTATTGTGGTACACCAGAACCTTGTGATCCCTACAATATATGCGCAAACAAACATACGTGTAGCTGTCCTCATGTTCTTCTTCCTAGTTGTAAACCAGGTTTTATCTCTCCTTGTGATGACGATAAATCAAAAAAGTCTATAGAATTTCTGAAAGCTGATGATGGGCTCAGCTACTTTGCGCTTGATTTTCTTCATCCCTATTTGAATACCGATTTGGCCGGTTGTCAGACATCTTGCCGTGGAAATTGCTCCTGTCTTGCAATGTTCTACCATACAAGTTCAGGGAACTGTTTCTTGTTGGACAGTATTGGAAGTTTTCAGAAATCTGATGACGCTGATTCTGGTTATGTTTCTTACATTAAGGTCTCAAGCGATGGAAGTGGAAGCAGCAATAAGCACATCATAGTTGTTGTAGTCGTTGTCATATTATCAACTCTGCTTGTTCTGCTCTTTGCAGGTGTTCTATACTGCAGAAAAAAGAAAAAGTTTGCTCAAGAGAATTCAGAAGAAGACAATTTCTTGGAGAATTTAACCGGTATGCCAATCCGTTTCCGCTATAAAGATCTTGAAGTTGCAACCAATAACTTCTTACTGAAGCTTGGTCAAGGTGGTTTTGGATCAGTTTATAAAGGAGTTCTACCTGATGGGAGTGAATTAGCTGTGAAGAAGCTAGAAGGTATTGGTCAAGGGATGAAAGAGTTCAGAGCTGAAGTTAGCATCATTGGAAGCATTCATCACCTTAATTTGATAAAACTTAGAGGATTTTGTGCAGAAGGAACTCATAGGCTTCTAGTTTATGAATATATGGCTAATAACTCATTGGATAAATGGATATTCAAGAAGAAAAAATGTGAATTTCTTTTGGATTGGGATACAAGGTTTAATATAGCATTAGGAACAGAAAAAGGGCTAGCTTATCTGCATCAAGAATGTGAGTCAAAAATTGTTCACTGTGACATCAAGCCTGAAAATGTACTTCTAGATGATCATTTCATTGCCAAAGTTTCAGATTTTGGTTTAGCCAAGCTCATGAATAGAGAACAAAGCCATGTTTTTACGACACTAAGAGGAACGCGTGGCTACCTTGCACCTGAGTGGATAACAAACCATGCTATATCAGAGAAAAGTGATGTATACAGTTATGGGATGATGTTGCTAGAGATAATTGGGGGACGGAAGAATTATGATCCTAATGAGACTTCAAAGAAATCGAATTTCCCTCGTTTTGCTTTTAAGATGATGGAAGAAGGTAAAGTGAGAGATATCATTGATTCAGAGATGAAAATAGATGATGAGTTTGATGATAGGGTTCACTGTGCTATAAGTGTTGCATTGTGGTGTATACAGGAAGACATGTCTACGAGACCTTCCATGACAGAAGTTGTTCAAATGTTAGAGGGTCTTTGTATTGTTCCTAAACCACCAAAATCCTCCAATGAAGGAGACACCTCTTCTGATGCTTATCTATCAGCAGTTAGTCTTTCAGGTCCAAGATAG

Protein sequence

>MS.gene039327.t1

MGIKHWFLSNIVVVLSISLLLIMSKLCLCDIQYIGTISPGMEGSQMNFNDKDFKFLLSKNRVFAFGFVAAVNDTTKFLLAIVHTASSTMLWAANRALPVTNYDSFVFDKNGNAFLRKDGTVIWSTNTISKVMELQDNGNLVLLGDDDNDTVIWQSFSYPTDTLMPSQDFKEGMKLTSEPSPNNLTYVLEIKSGNVILSAGYKTPQTYWTMQKDNRKIIDKVGHVVAFANLSDNSWRFYDNNKSLLWQFIFSADGGINGSWIAVLGRDGVITFSNLNGGGSNGDSSTRIPQDYCGTPEPCDPYNICANKHTCSCPHVLLPSCKPGFISPCDDDKSKKSIEFLKADDGLSYFALDFLHPYLNTDLAGCQTSCRGNCSCLAMFYHTSSGNCFLLDSIGSFQKSDDADSGYVSYIKVSSDGSGSSNKHIIVVVVVVILSTLLVLLFAGVLYCRKKKKFAQENSEEDNFLENLTGMPIRFRYKDLEVATNNFLLKLGQGGFGSVYKGVLPDGSELAVKKLEGIGQGMKEFRAEVSIIGSIHHLNLIKLRGFCAEGTHRLLVYEYMANNSLDKWIFKKKKCEFLLDWDTRFNIALGTEKGLAYLHQECESKIVHCDIKPENVLLDDHFIAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNHAISEKSDVYSYGMMLLEIIGGRKNYDPNETSKKSNFPRFAFKMMEEGKVRDIIDSEMKIDDEFDDRVHCAISVALWCIQEDMSTRPSMTEVVQMLEGLCIVPKPPKSSNEGDTSSDAYLSAVSLSGPR