AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039332

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039332.t1 MTR_2g073370 98.639 294 4 0 1 294 1 294 0.0 609
MS.gene039332.t1 MTR_4g067320 60.550 109 43 0 1 109 1 109 5.30e-43 147
MS.gene039332.t1 MTR_4g067320 60.550 109 43 0 1 109 1 109 5.39e-43 147
MS.gene039332.t1 MTR_2g099010 34.211 266 126 6 1 266 1 217 1.12e-42 147
MS.gene039332.t1 MTR_2g099010 40.104 192 80 3 1 192 1 157 2.53e-42 145
MS.gene039332.t1 MTR_3g117320 50.685 146 71 1 1 145 1 146 5.25e-41 142
MS.gene039332.t1 MTR_4g071200 54.717 106 47 1 1 105 1 106 8.51e-36 128
MS.gene039332.t1 MTR_3g113070 54.717 106 46 1 1 104 1 106 9.67e-36 128
MS.gene039332.t1 MTR_1g023260 54.286 105 47 1 1 104 1 105 1.28e-35 129
MS.gene039332.t1 MTR_1g023260 54.286 105 47 1 1 104 1 105 3.41e-35 125
MS.gene039332.t1 MTR_5g021580 50.000 104 49 2 1 104 1 101 1.58e-26 103
MS.gene039332.t1 MTR_5g021580 50.000 104 49 2 1 104 1 101 1.87e-26 103
MS.gene039332.t1 MTR_1g013450 41.667 96 47 1 5 100 6 92 1.04e-18 84.7
MS.gene039332.t1 MTR_3g105710 44.792 96 44 1 5 100 6 92 1.71e-18 84.0
MS.gene039332.t1 MTR_7g018170 43.478 92 43 1 5 96 26 108 2.05e-17 82.0
MS.gene039332.t1 MTR_4g128930 38.043 92 48 1 5 96 22 104 1.77e-14 73.2
MS.gene039332.t1 MTR_5g069480 33.333 96 55 1 1 96 1 87 2.74e-11 63.9
MS.gene039332.t1 MTR_5g069480 33.333 96 55 1 1 96 1 87 4.77e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039332.t1 AT1G78600 52.448 286 114 4 1 273 1 277 4.96e-93 278
MS.gene039332.t1 AT1G78600 48.366 306 116 5 1 273 1 297 1.24e-90 272
MS.gene039332.t1 AT1G06040 64.220 109 39 0 1 109 1 109 1.73e-46 154
MS.gene039332.t1 AT1G06040 64.220 109 39 0 1 109 1 109 6.49e-46 155
MS.gene039332.t1 AT2G31380 61.468 109 42 0 1 109 1 109 2.48e-42 145
MS.gene039332.t1 AT4G10240 49.701 167 62 5 1 161 1 151 7.39e-41 139
MS.gene039332.t1 AT1G75540 40.090 222 114 6 1 211 1 214 5.86e-36 132
MS.gene039332.t1 AT4G39070 49.640 139 68 2 1 138 1 138 1.95e-35 128
MS.gene039332.t1 AT2G21320 50.000 104 49 2 1 104 1 101 1.80e-26 102
MS.gene039332.t1 AT4G38960 40.580 138 78 3 1 138 1 134 2.71e-26 102
MS.gene039332.t1 AT4G38960 40.580 138 78 3 1 138 1 134 2.71e-26 102
MS.gene039332.t1 AT5G15850 42.857 98 47 1 5 102 12 100 3.20e-18 84.0
MS.gene039332.t1 AT2G24790 41.667 96 47 1 5 100 8 94 9.81e-18 82.0
MS.gene039332.t1 AT5G24930 42.708 96 46 1 5 100 6 92 9.95e-18 82.8
MS.gene039332.t1 AT4G38960 30.939 181 78 4 1 138 1 177 1.27e-17 80.5
MS.gene039332.t1 AT3G02380 43.011 93 44 1 5 97 16 99 1.93e-17 81.6
MS.gene039332.t1 AT2G24790 41.667 96 47 1 5 100 8 94 3.03e-17 79.3
MS.gene039332.t1 AT5G15840 37.755 98 52 1 5 102 20 108 5.55e-16 77.8
MS.gene039332.t1 AT5G15840 39.785 93 47 1 5 97 20 103 1.18e-15 75.9
MS.gene039332.t1 AT2G47890 38.710 93 48 1 5 97 13 96 1.12e-12 67.8
MS.gene039332.t1 AT2G47890 38.710 93 48 1 5 97 13 96 1.16e-12 67.4
MS.gene039332.t1 AT2G47890 38.710 93 48 1 5 97 13 96 3.11e-12 65.5
MS.gene039332.t1 AT5G57660 34.783 92 47 2 5 96 22 100 3.29e-11 63.5
MS.gene039332.t1 AT4G38960 33.981 103 64 3 36 138 3 101 6.27e-11 60.1
MS.gene039332.t1 AT4G38960 33.981 103 64 3 36 138 3 101 6.27e-11 60.1

Find 59 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCATTGGATCTTAAAAT+AGG 0.258790 2.2:+19175821 None:intergenic
CCACCAGCCAAGGTGTCTTA+TGG 0.275750 2.2:-19176686 MS.gene039332:CDS
CCTACCGAAGCCGGAGGATT+TGG 0.277213 2.2:-19176716 MS.gene039332:CDS
GTATTCCATTTCCTCTTCAT+TGG 0.304492 2.2:+19175808 None:intergenic
AATTCGTTGAAGACAGATTC+TGG 0.304552 2.2:-19176824 MS.gene039332:CDS
TGATAATGCTCTATTTGTTC+CGG 0.342587 2.2:-19175678 MS.gene039332:CDS
TTCCGTGATCAGTAGCTTCT+AGG 0.348013 2.2:+19176855 None:intergenic
CCATCACCACCTACAGCTTC+GGG 0.354633 2.2:-19175734 MS.gene039332:CDS
CTGATGAAGCTGCTTTGTGC+TGG 0.357019 2.2:-19178159 MS.gene039332:CDS
CCCATCACCACCTACAGCTT+CGG 0.391074 2.2:-19175735 MS.gene039332:CDS
AAGATCCAATGAAGAGGAAA+TGG 0.393956 2.2:-19175813 MS.gene039332:CDS
GGAACTGTCCAAGACGAATC+TGG 0.395347 2.2:+19175764 None:intergenic
ATCTGTCTTCAACGAATTTG+AGG 0.404754 2.2:+19176829 None:intergenic
ACCTGACAAATATCACATTT+AGG 0.415653 2.2:+19178052 None:intergenic
ATCTCCAAATCCTCCGGCTT+CGG 0.419987 2.2:+19176712 None:intergenic
ATCTTCTTCTGTCTCGAGAA+AGG 0.428233 2.2:-19176780 MS.gene039332:CDS
CTACAGCTTCGGGGCTAAGC+TGG 0.429718 2.2:-19175724 MS.gene039332:CDS
GCTCTATTTGTTCCGGACAT+AGG 0.432303 2.2:-19175671 MS.gene039332:CDS
TAAACCTTTCAGGAAGCATT+CGG 0.445968 2.2:-19176998 MS.gene039332:intron
GCCTAAATGTGATATTTGTC+AGG 0.459129 2.2:-19178053 MS.gene039332:intron
CCCGAAGCTGTAGGTGGTGA+TGG 0.475557 2.2:+19175734 None:intergenic
TATGGTGGTGGTTCTAACTC+TGG 0.487845 2.2:-19176668 MS.gene039332:CDS
GAAATGTTGCCTACCGAAGC+CGG 0.489819 2.2:-19176725 MS.gene039332:CDS
TGGATGGATCATCAAATTCA+AGG 0.498918 2.2:-19176577 MS.gene039332:CDS
CAGTCAGAATTATAACTACA+TGG 0.503150 2.2:-19176597 MS.gene039332:CDS
GCCAAGGTGTCTTATGGTGG+TGG 0.508324 2.2:-19176680 MS.gene039332:CDS
CCACCATAAGACACCTTGGC+TGG 0.515474 2.2:+19176683 None:intergenic
ACTGCAAATGCATTTGTCTC+AGG 0.516070 2.2:-19176914 MS.gene039332:CDS
TGGAAAATCTCCAAATCCTC+CGG 0.517904 2.2:+19176706 None:intergenic
CAGAATTATAACTACATGGA+TGG 0.518101 2.2:-19176593 MS.gene039332:CDS
TGATGAAGCTGCTTTGTGCT+GGG 0.522643 2.2:-19178158 MS.gene039332:CDS
ACCGTGTTCCAGATTCGTCT+TGG 0.527866 2.2:-19175772 MS.gene039332:CDS
TCATTGTACTCAGATGATTG+AGG 0.549321 2.2:+19176746 None:intergenic
TGAGAAGAAGAAGCAGAAAG+AGG 0.549965 2.2:+19178079 None:intergenic
CTTCTCACCGGTGTAAAAGT+CGG 0.551046 2.2:-19176878 MS.gene039332:CDS
CAGCTTAGCCCCGAAGCTGT+AGG 0.553429 2.2:+19175725 None:intergenic
CCGAAGCTGTAGGTGGTGAT+GGG 0.554827 2.2:+19175735 None:intergenic
AATGGAATACGACGACTACA+TGG 0.559471 2.2:-19175795 MS.gene039332:CDS
ATGCTTGTAAAGCCTATGTC+CGG 0.560747 2.2:+19175659 None:intergenic
CATCAAAGGTTTCTTCTCAC+CGG 0.573699 2.2:-19176890 MS.gene039332:CDS
CCAGCCAAGGTGTCTTATGG+TGG 0.576805 2.2:-19176683 MS.gene039332:CDS
CCAAATCCTCCGGCTTCGGT+AGG 0.580489 2.2:+19176716 None:intergenic
CATTTGTCTCAGGACATCAA+AGG 0.584028 2.2:-19176904 MS.gene039332:CDS
ACCACCACCATAAGACACCT+TGG 0.592536 2.2:+19176679 None:intergenic
TTGTGAAGGTGCTGAAGCTA+AGG 0.593143 2.2:-19178194 MS.gene039332:CDS
CCATAAGACACCTTGGCTGG+TGG 0.594137 2.2:+19176686 None:intergenic
GGCCTAGAAGCTACTGATCA+CGG 0.598771 2.2:-19176857 MS.gene039332:CDS
GGATGGATCATCAAATTCAA+GGG 0.601507 2.2:-19176576 MS.gene039332:intron
CATTATCAAATGAATACCGA+GGG 0.621477 2.2:+19175693 None:intergenic
ATTCAGTGTAATGTTTGTGA+AGG 0.627076 2.2:-19178208 MS.gene039332:CDS
CCGAATTAGTGATGATTCCG+CGG 0.646351 2.2:+19175602 None:intergenic
CTTAGCCCCGAAGCTGTAGG+TGG 0.647227 2.2:+19175728 None:intergenic
GCATTATCAAATGAATACCG+AGG 0.666251 2.2:+19175692 None:intergenic
TCCAAGACGAATCTGGAACA+CGG 0.671574 2.2:+19175771 None:intergenic
GTAGGTGGTGATGGGATCTG+AGG 0.674067 2.2:+19175743 None:intergenic
CATCACCACCTACAGCTTCG+GGG 0.682711 2.2:-19175733 MS.gene039332:CDS
GAGTTTATGCAGGCTGACAG+TGG 0.687400 2.2:-19175866 MS.gene039332:intron
ATGTTGCCTACCGAAGCCGG+AGG 0.732134 2.2:-19176722 MS.gene039332:CDS
ACTCTGGAAACATGTCACAG+TGG 0.763112 2.2:-19176652 MS.gene039332:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGAAAAAAAAAATTGA+GGG + chr2.2:19177295-19177314 None:intergenic 10.0%
!! AGTTCAAAAATATAAATAAA+AGG + chr2.2:19176049-19176068 None:intergenic 10.0%
!!! GTATTTTTTTGAAATTAATT+TGG - chr2.2:19175867-19175886 MS.gene039332:intron 10.0%
!!! TTTTTATTGATTTATTTGAA+TGG - chr2.2:19175845-19175864 MS.gene039332:CDS 10.0%
!! CAAATAGAAAAAAAAAATTG+AGG + chr2.2:19177296-19177315 None:intergenic 15.0%
!! CATGAAAAAGTAAAAAAATT+TGG - chr2.2:19175902-19175921 MS.gene039332:intron 15.0%
!! TCATAAAATCTTATCATTTA+AGG - chr2.2:19176293-19176312 MS.gene039332:intron 15.0%
!!! CTCAATTTTTTTTTTCTATT+TGG - chr2.2:19177294-19177313 MS.gene039332:intron 15.0%
!!! GAAATCTATAATTTTGTATA+GGG - chr2.2:19176187-19176206 MS.gene039332:intron 15.0%
!!! TGAAATCTATAATTTTGTAT+AGG - chr2.2:19176186-19176205 MS.gene039332:intron 15.0%
!!! TTTAATTTTGTATAAGGTTT+TGG - chr2.2:19175813-19175832 MS.gene039332:CDS 15.0%
!! AAAAATTACTACTATTCTGA+GGG + chr2.2:19178194-19178213 None:intergenic 20.0%
!! TATGAAAAATCGTATTTACA+AGG + chr2.2:19176278-19176297 None:intergenic 20.0%
!! TTAGAAACAGCTAAAATATT+TGG - chr2.2:19176142-19176161 MS.gene039332:intron 20.0%
!!! AATAAGTTTAAAACAGCTTA+TGG - chr2.2:19177786-19177805 MS.gene039332:intron 20.0%
!!! TGAAATATTTGACTTTTGAA+AGG + chr2.2:19176245-19176264 None:intergenic 20.0%
!!! TTGGTAATATTTTGAGAAAA+TGG - chr2.2:19176564-19176583 MS.gene039332:intron 20.0%
!!! TTTTAAGTGCTTTTTAACTA+TGG - chr2.2:19177513-19177532 MS.gene039332:intron 20.0%
!!! TTTTTGAAATTAATTTGGAG+TGG - chr2.2:19175872-19175891 MS.gene039332:intron 20.0%
!!! TTTTTTTTCTATTTGGATCA+TGG - chr2.2:19177301-19177320 MS.gene039332:intron 20.0%
! AATGCAGAAATATTAAGAAC+TGG - chr2.2:19177435-19177454 MS.gene039332:intron 25.0%
! ATGAATGTTGAAAGTAGTAA+AGG - chr2.2:19177599-19177618 MS.gene039332:intron 25.0%
! GAAAAATTACTACTATTCTG+AGG + chr2.2:19178195-19178214 None:intergenic 25.0%
! GGACAAATAACAAATTAACA+AGG + chr2.2:19176769-19176788 None:intergenic 25.0%
! TCTTCATTGGATCTTAAAAT+AGG + chr2.2:19178003-19178022 None:intergenic 25.0%
! TTAAAACGTTTATCCAAACA+AGG + chr2.2:19177655-19177674 None:intergenic 25.0%
! TTAGTTCCAGAATCATATAA+AGG + chr2.2:19176104-19176123 None:intergenic 25.0%
! TTATATTCAAGTGCTTATGT+CGG - chr2.2:19177846-19177865 MS.gene039332:intron 25.0%
! TTGAAACCTTTATATGATTC+TGG - chr2.2:19176095-19176114 MS.gene039332:intron 25.0%
! TTGAAAGGAATAATTTCTTC+TGG + chr2.2:19176230-19176249 None:intergenic 25.0%
!! AAATCCTTTTCCTTGAATAT+GGG - chr2.2:19176489-19176508 MS.gene039332:intron 25.0%
!! TGGACAATTGATGAATTTTT+CGG - chr2.2:19177189-19177208 MS.gene039332:intron 25.0%
!!! TATTTTAAGATCCAATGAAG+AGG - chr2.2:19178002-19178021 MS.gene039332:intron 25.0%
!!! TGTTAATTTGTTATTTGTCC+TGG - chr2.2:19176769-19176788 MS.gene039332:CDS 25.0%
!!! TTGTGTTATTTAAACCTTTC+AGG - chr2.2:19176813-19176832 MS.gene039332:CDS 25.0%
ACCTGACAAATATCACATTT+AGG + chr2.2:19175772-19175791 None:intergenic 30.0%
AGTGCTATATATGTTTCTTG+TGG - chr2.2:19176652-19176671 MS.gene039332:CDS 30.0%
ATATGTTTCTTGTGGTTGTA+TGG - chr2.2:19176660-19176679 MS.gene039332:CDS 30.0%
ATTCAGTGTAATGTTTGTGA+AGG - chr2.2:19175613-19175632 MS.gene039332:CDS 30.0%
CAGAATTATAACTACATGGA+TGG - chr2.2:19177228-19177247 MS.gene039332:intron 30.0%
CAGTCAGAATTATAACTACA+TGG - chr2.2:19177224-19177243 MS.gene039332:intron 30.0%
CATTATCAAATGAATACCGA+GGG + chr2.2:19178131-19178150 None:intergenic 30.0%
CTAAGTATCATAGACCAAAA+GGG + chr2.2:19176355-19176374 None:intergenic 30.0%
CTCAACAAAAATGTTGACAA+TGG + chr2.2:19176740-19176759 None:intergenic 30.0%
CTGCATTTACAATGTACATT+AGG + chr2.2:19177422-19177441 None:intergenic 30.0%
GTTCAAAACTATTTCCTTGT+TGG - chr2.2:19176403-19176422 MS.gene039332:intron 30.0%
TCAAATAAGCCAATTCAAAC+AGG - chr2.2:19177878-19177897 MS.gene039332:intron 30.0%
TGTGAACATTGTCATATGAT+TGG - chr2.2:19177375-19177394 MS.gene039332:intron 30.0%
TTCTATGACAAGTTAGAAAG+TGG - chr2.2:19176454-19176473 MS.gene039332:intron 30.0%
TTTATGGTTGAATGCTTATG+CGG - chr2.2:19177922-19177941 MS.gene039332:intron 30.0%
! CAAATCCTTTTCCTTGAATA+TGG - chr2.2:19176488-19176507 MS.gene039332:intron 30.0%
! CATTGTCAACATTTTTGTTG+AGG - chr2.2:19176738-19176757 MS.gene039332:CDS 30.0%
! GACAGAAGAAGATTTTGTAT+CGG + chr2.2:19177034-19177053 None:intergenic 30.0%
! TGATAATGCTCTATTTGTTC+CGG - chr2.2:19178143-19178162 MS.gene039332:CDS 30.0%
! TTTTCTATCTTCTCTGTTCA+TGG - chr2.2:19177346-19177365 MS.gene039332:intron 30.0%
!! AAGCTAATAGTTGTTTTCAC+AGG - chr2.2:19177742-19177761 MS.gene039332:intron 30.0%
AAGATCCAATGAAGAGGAAA+TGG - chr2.2:19178008-19178027 MS.gene039332:intron 35.0%
AAGTTCTTTCAAACTGAACC+AGG + chr2.2:19176790-19176809 None:intergenic 35.0%
AATGTTGACGTTCCAATGTT+AGG + chr2.2:19176546-19176565 None:intergenic 35.0%
AATTCGTTGAAGACAGATTC+TGG - chr2.2:19176997-19177016 MS.gene039332:intron 35.0%
AGTAGCAGTATATCCTTGTT+TGG - chr2.2:19177639-19177658 MS.gene039332:intron 35.0%
ATAGAAATCGGACCTAACAT+TGG - chr2.2:19176531-19176550 MS.gene039332:intron 35.0%
ATCTGTCTTCAACGAATTTG+AGG + chr2.2:19176995-19177014 None:intergenic 35.0%
ATTGGATCACTGACAAAGAT+TGG - chr2.2:19177393-19177412 MS.gene039332:intron 35.0%
CAAAACTATTTCCTTGTTGG+TGG - chr2.2:19176406-19176425 MS.gene039332:intron 35.0%
GCATTATCAAATGAATACCG+AGG + chr2.2:19178132-19178151 None:intergenic 35.0%
GCCTAAATGTGATATTTGTC+AGG - chr2.2:19175768-19175787 MS.gene039332:CDS 35.0%
GCTAAGTATCATAGACCAAA+AGG + chr2.2:19176356-19176375 None:intergenic 35.0%
GGATGGATCATCAAATTCAA+GGG - chr2.2:19177245-19177264 MS.gene039332:intron 35.0%
GGTCCTTAAATATTGTCTAG+AGG - chr2.2:19176314-19176333 MS.gene039332:intron 35.0%
GTATTCCATTTCCTCTTCAT+TGG + chr2.2:19178016-19178035 None:intergenic 35.0%
TAACATTGGAACGTCAACAT+TGG - chr2.2:19176545-19176564 MS.gene039332:intron 35.0%
TACTCCCATATTCAAGGAAA+AGG + chr2.2:19176496-19176515 None:intergenic 35.0%
TATTGTTACTACCACCAACA+AGG + chr2.2:19176420-19176439 None:intergenic 35.0%
TCATTGTACTCAGATGATTG+AGG + chr2.2:19177078-19177097 None:intergenic 35.0%
TGCTTGACACACATAGAAAT+CGG - chr2.2:19176519-19176538 MS.gene039332:intron 35.0%
TGGATGGATCATCAAATTCA+AGG - chr2.2:19177244-19177263 MS.gene039332:intron 35.0%
! AATGAATACCGAGGGTTTTT+CGG + chr2.2:19178123-19178142 None:intergenic 35.0%
! TCTAACTTGTCATAGAAGCA+AGG + chr2.2:19176451-19176470 None:intergenic 35.0%
!! TAAACCTTTCAGGAAGCATT+CGG - chr2.2:19176823-19176842 MS.gene039332:CDS 35.0%
!!! GTAGTAATTTTTCAAGACCG+CGG - chr2.2:19178202-19178221 MS.gene039332:CDS 35.0%
AATCGCTTAACACTGCAGTA+AGG + chr2.2:19177904-19177923 None:intergenic 40.0%
AATGGAATACGACGACTACA+TGG - chr2.2:19178026-19178045 MS.gene039332:intron 40.0%
ACTGCAAATGCATTTGTCTC+AGG - chr2.2:19176907-19176926 MS.gene039332:CDS 40.0%
ATCTTCTTCTGTCTCGAGAA+AGG - chr2.2:19177041-19177060 MS.gene039332:intron 40.0%
ATGCTTGTAAAGCCTATGTC+CGG + chr2.2:19178165-19178184 None:intergenic 40.0%
CATCAAAGGTTTCTTCTCAC+CGG - chr2.2:19176931-19176950 MS.gene039332:CDS 40.0%
CATTTGTCTCAGGACATCAA+AGG - chr2.2:19176917-19176936 MS.gene039332:CDS 40.0%
CTGCAGTGTTAAGCGATTTA+TGG - chr2.2:19177906-19177925 MS.gene039332:intron 40.0%
GCAAGATACTCCCATATTCA+AGG + chr2.2:19176502-19176521 None:intergenic 40.0%
GCGCCTCTAGACAATATTTA+AGG + chr2.2:19176320-19176339 None:intergenic 40.0%
TCCTTCTGATGAGTTTATGC+AGG - chr2.2:19177945-19177964 MS.gene039332:intron 40.0%
TGAGAAGAAGAAGCAGAAAG+AGG + chr2.2:19175745-19175764 None:intergenic 40.0%
TGGAAAATCTCCAAATCCTC+CGG + chr2.2:19177118-19177137 None:intergenic 40.0%
!!! CGGCTATTTCTTTTGTCTAG+AGG - chr2.2:19176843-19176862 MS.gene039332:CDS 40.0%
ATAGCCGAATGCTTCCTGAA+AGG + chr2.2:19176830-19176849 None:intergenic 45.0%
CTTCTCACCGGTGTAAAAGT+CGG - chr2.2:19176943-19176962 MS.gene039332:CDS 45.0%
GCAGTAAGGCCTGTTTGAAT+TGG + chr2.2:19177890-19177909 None:intergenic 45.0%
GCCTGCATAAACTCATCAGA+AGG + chr2.2:19177949-19177968 None:intergenic 45.0%
GCTCTATTTGTTCCGGACAT+AGG - chr2.2:19178150-19178169 MS.gene039332:CDS 45.0%
TTCCGTGATCAGTAGCTTCT+AGG + chr2.2:19176969-19176988 None:intergenic 45.0%
! ACTCTGGAAACATGTCACAG+TGG - chr2.2:19177169-19177188 MS.gene039332:intron 45.0%
! GCTCGTTAGCATTTCCCTTT+TGG - chr2.2:19176338-19176357 MS.gene039332:intron 45.0%
! TCCAAGACGAATCTGGAACA+CGG + chr2.2:19178053-19178072 None:intergenic 45.0%
! TGATGAAGCTGCTTTGTGCT+GGG - chr2.2:19175663-19175682 MS.gene039332:CDS 45.0%
!! TATGGTGGTGGTTCTAACTC+TGG - chr2.2:19177153-19177172 MS.gene039332:intron 45.0%
!! TTCTAGGCCGACTTTTACAC+CGG + chr2.2:19176953-19176972 None:intergenic 45.0%
!! TTGTGAAGGTGCTGAAGCTA+AGG - chr2.2:19175627-19175646 MS.gene039332:CDS 45.0%
!!! TTTTTTTTTAATTTTGTATA+AGG - chr2.2:19175807-19175826 MS.gene039332:CDS 5.0%
ACCACCACCATAAGACACCT+TGG + chr2.2:19177145-19177164 None:intergenic 50.0%
ACCGTGTTCCAGATTCGTCT+TGG - chr2.2:19178049-19178068 MS.gene039332:intron 50.0%
ATCTCCAAATCCTCCGGCTT+CGG + chr2.2:19177112-19177131 None:intergenic 50.0%
GAAATGTTGCCTACCGAAGC+CGG - chr2.2:19177096-19177115 MS.gene039332:intron 50.0%
GAGTTTATGCAGGCTGACAG+TGG - chr2.2:19177955-19177974 MS.gene039332:intron 50.0%
GGAACTGTCCAAGACGAATC+TGG + chr2.2:19178060-19178079 None:intergenic 50.0%
GGCCTAGAAGCTACTGATCA+CGG - chr2.2:19176964-19176983 MS.gene039332:CDS 50.0%
TAAGCTGGCCGAAAAACCCT+CGG - chr2.2:19178112-19178131 MS.gene039332:CDS 50.0%
! CTGATGAAGCTGCTTTGTGC+TGG - chr2.2:19175662-19175681 MS.gene039332:CDS 50.0%
! TGGAGATTTTCCACCAGCCA+AGG - chr2.2:19177125-19177144 MS.gene039332:intron 50.0%
CATCACCACCTACAGCTTCG+GGG - chr2.2:19178088-19178107 MS.gene039332:CDS 55.0%
CCACCATAAGACACCTTGGC+TGG + chr2.2:19177141-19177160 None:intergenic 55.0%
CCATAAGACACCTTGGCTGG+TGG + chr2.2:19177138-19177157 None:intergenic 55.0%
CCATCACCACCTACAGCTTC+GGG - chr2.2:19178087-19178106 MS.gene039332:CDS 55.0%
CCCATCACCACCTACAGCTT+CGG - chr2.2:19178086-19178105 MS.gene039332:CDS 55.0%
CCGAAGCTGTAGGTGGTGAT+GGG + chr2.2:19178089-19178108 None:intergenic 55.0%
! CCACCAGCCAAGGTGTCTTA+TGG - chr2.2:19177135-19177154 MS.gene039332:intron 55.0%
! CCAGCCAAGGTGTCTTATGG+TGG - chr2.2:19177138-19177157 MS.gene039332:intron 55.0%
! GCCAAGGTGTCTTATGGTGG+TGG - chr2.2:19177141-19177160 MS.gene039332:intron 55.0%
!! GTAGGTGGTGATGGGATCTG+AGG + chr2.2:19178081-19178100 None:intergenic 55.0%
ATGTTGCCTACCGAAGCCGG+AGG - chr2.2:19177099-19177118 MS.gene039332:intron 60.0%
CAGCTTAGCCCCGAAGCTGT+AGG + chr2.2:19178099-19178118 None:intergenic 60.0%
CCAAATCCTCCGGCTTCGGT+AGG + chr2.2:19177108-19177127 None:intergenic 60.0%
CCCGAAGCTGTAGGTGGTGA+TGG + chr2.2:19178090-19178109 None:intergenic 60.0%
CCTACCGAAGCCGGAGGATT+TGG - chr2.2:19177105-19177124 MS.gene039332:intron 60.0%
CTACAGCTTCGGGGCTAAGC+TGG - chr2.2:19178097-19178116 MS.gene039332:CDS 60.0%
CTTAGCCCCGAAGCTGTAGG+TGG + chr2.2:19178096-19178115 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 19175607 19178236 19175607 ID=MS.gene039332
chr2.2 mRNA 19175607 19178236 19175607 ID=MS.gene039332.t1;Parent=MS.gene039332
chr2.2 exon 19178054 19178236 19178054 ID=MS.gene039332.t1.exon1;Parent=MS.gene039332.t1
chr2.2 CDS 19178054 19178236 19178054 ID=cds.MS.gene039332.t1;Parent=MS.gene039332.t1
chr2.2 exon 19176577 19177008 19176577 ID=MS.gene039332.t1.exon2;Parent=MS.gene039332.t1
chr2.2 CDS 19176577 19177008 19176577 ID=cds.MS.gene039332.t1;Parent=MS.gene039332.t1
chr2.2 exon 19175607 19175876 19175607 ID=MS.gene039332.t1.exon3;Parent=MS.gene039332.t1
chr2.2 CDS 19175607 19175876 19175607 ID=cds.MS.gene039332.t1;Parent=MS.gene039332.t1
Gene Sequence

>MS.gene039332

ATGAAGATTCAGTGTAATGTTTGTGAAGGTGCTGAAGCTAAGGTTCTTTGTTGTGCTGATGAAGCTGCTTTGTGCTGGGAATGTGATGAGAAAGTTCATGCTGCTAATAAACTTGCTAGCAAACATCAAAGAGTTCCTCTTTCTGCTTCTTCTTCTCATATGCCTAAATGTGATATTTGTCAGGTACTTTGATTTATTTTTTTTTTTTTAATTTTGTATAAGGTTTTGGATTAAAGAGTTTTTATTGATTTATTTGAATGGTATTTTTTTGAAATTAATTTGGAGTGGTAAACTTCATGAAAAAGTAAAAAAATTTGGTATTGAACACTGTTAAAATTATTGTGTATTTACTTTTCTTTGATTGTAACATTTGTTTCTGATTTGAATCTTATGTATACTGATTCAAAGATGTTTTTTTATTGATACTTTACAATTTTTTCCTTTTATTTATATTTTTGAACTTTAATTGTAATATTTTGATGAGTTGATTGAAACCTTTATATGATTCTGGAACTAAATTGAAGATCTTGATTGATTAGAAACAGCTAAAATATTTGGAATCATTTGTTGATCACTAACTGAAATCTATAATTTTGTATAGGGTCTTGCTAACGAGTGCTCCAGAAGAAATTATTCCTTTCAAAAGTCAAATATTTCAATTTTCAATGCCTTGTAAATACGATTTTTCATAAAATCTTATCATTTAAGGTCCTTAAATATTGTCTAGAGGCGCTCGTTAGCATTTCCCTTTTGGTCTATGATACTTAGCAAGATATTTGTAAGTGTCTTACTATTTGTTCAAAACTATTTCCTTGTTGGTGGTAGTAACAATAAACTACTACCTTGCTTCTATGACAAGTTAGAAAGTGGAAATTGTGATTCAAATCCTTTTCCTTGAATATGGGAGTATCTTGCTTGACACACATAGAAATCGGACCTAACATTGGAACGTCAACATTGGTAATATTTTGAGAAAATGGAAGTAATTGAATATAACTACTTGTGTTAATGTCAAACGATGAACAAGTCTTTAATCTAAAGTGTCAGTGCTATATATGTTTCTTGTGGTTGTATGGAGTCAAGAGCTTTGTTAATTTGTTTTTTGTCATGTCTTTGTGTTGTGACTTAAACCATTGTCAACATTTTTGTTGAGGTAGAACCTTGTTAATTTGTTATTTGTCCTGGTTCAGTTTGAAAGAACTTGAATTGTGTTATTTAAACCTTTCAGGAAGCATTCGGCTATTTCTTTTGTCTAGAGGATCGCGCTTTACTCTGCAGAAAATGTGATTTAGCAATACACACTGCAAATGCATTTGTCTCAGGACATCAAAGGTTTCTTCTCACCGGTGTAAAAGTCGGCCTAGAAGCTACTGATCACGGAACTTCCTCAAATTCGTTGAAGACAGATTCTGGTGAGAAAGTTTCCGATACAAAATCTTCTTCTGTCTCGAGAAAGGTTTCGCAAATGCCTCAATCATCTGAGTACAATGAAATGTTGCCTACCGAAGCCGGAGGATTTGGAGATTTTCCACCAGCCAAGGTGTCTTATGGTGGTGGTTCTAACTCTGGAAACATGTCACAGTGGACAATTGATGAATTTTTCGGCGTAAATGATTTCAGTCAGAATTATAACTACATGGATGGATCATCAAATTCAAGGGTATGTTCATAGTTTCTGCATTATACCCTCAATTTTTTTTTTCTATTTGGATCATGGATTCAATTCATGAGATTTGTAGTTTTCTATCTTCTCTGTTCATGGATACTCTGTGAACATTGTCATATGATTGGATCACTGACAAAGATTGGTTTCCTAATGTACATTGTAAATGCAGAAATATTAAGAACTGGAAATATATGTTTGATTGATTGAAGTGCTTGTTCTTTGTTTCTTTAGTTCTCTTATTTTTAAGTGCTTTTTAACTATGGAAAACTTTTTAGAAGTGCAATATTCATTTCACTAAAAACATATTATAAACATTATTTTCTGAAATGAATGTTGAAAGTAGTAAAGGTGATGATGAGTTATTTCAGTAGCAGTATATCCTTGTTTGGATAAACGTTTTAACTAAGTGCTTATAGCATAAACTGCTTTTATAACAAATGATGAAATTAAAGTCAAACTGTTTTCATTTAAGCTAATAGTTGTTTTCACAGGCTATCTTTAAAAACTTATGAAAATAAGTTTAAAACAGCTTATGGACATGTTATCAACTGTTTTCATAAGCTCGTACTATCATTATATTCAAGTGCTTATGTCGGTAGATAAGTTCAAATAAGCCAATTCAAACAGGCCTTACTGCAGTGTTAAGCGATTTATGGTTGAATGCTTATGCGGTCCTTCTGATGAGTTTATGCAGGCTGACAGTGGTAAGCTTGAAGATTCTGATTCTCCTATTTTAAGATCCAATGAAGAGGAAATGGAATACGACGACTACATGGACCGTGTTCCAGATTCGTCTTGGACAGTTCCTCAGATCCCATCACCACCTACAGCTTCGGGGCTAAGCTGGCCGAAAAACCCTCGGTATTCATTTGATAATGCTCTATTTGTTCCGGACATAGGCTTTACAAGCATGCAATACCCTCAGAATAGTAGTAATTTTTCAAGACCGCGGAATCATCACTAA
Protein sequence

>MS.gene039332.t1

MKIQCNVCEGAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSASSSHMPKCDICQEAFGYFFCLEDRALLCRKCDLAIHTANAFVSGHQRFLLTGVKVGLEATDHGTSSNSLKTDSGEKVSDTKSSSVSRKVSQMPQSSEYNEMLPTEAGGFGDFPPAKVSYGGGSNSGNMSQWTIDEFFGVNDFSQNYNYMDGSSNSRADSGKLEDSDSPILRSNEEEMEYDDYMDRVPDSSWTVPQIPSPPTASGLSWPKNPRYSFDNALFVPDIGFTSMQYPQNSSNFSRPRNHH