AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03935

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03935.t1 MTR_3g465280 69.333 75 19 3 22 95 9 80 1.58e-26 103
MS.gene03935.t1 MTR_3g465280 43.697 119 57 5 1 117 83 193 5.49e-20 86.3
MS.gene03935.t1 MTR_4g079500 42.105 95 55 0 108 202 194 288 1.41e-17 80.1
MS.gene03935.t1 MTR_2g090900 41.053 95 56 0 108 202 191 285 1.19e-16 77.8
MS.gene03935.t1 MTR_2g090900 41.053 95 56 0 108 202 191 285 1.57e-16 77.4
MS.gene03935.t1 MTR_5g075390 33.071 127 77 1 82 200 125 251 1.58e-12 66.2
MS.gene03935.t1 MTR_6g034945 37.273 110 69 0 107 216 150 259 4.75e-12 64.3
MS.gene03935.t1 MTR_3g467120 38.298 94 58 0 107 200 176 269 6.16e-12 64.3
MS.gene03935.t1 MTR_3g094020 32.468 154 89 4 58 200 51 200 6.83e-12 63.9
MS.gene03935.t1 MTR_4g072090 35.514 107 69 0 104 210 356 462 1.96e-11 63.2
MS.gene03935.t1 MTR_2g099050 34.653 101 66 0 107 207 220 320 2.12e-11 63.2
MS.gene03935.t1 MTR_3g465350 30.882 136 88 2 88 217 32 167 6.26e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03935.t1 AT2G42380 40.000 115 69 0 91 205 169 283 3.39e-19 84.7
MS.gene03935.t1 AT3G58120 41.053 95 56 0 108 202 202 296 2.13e-17 79.7
MS.gene03935.t1 AT2G42380 42.708 96 55 0 91 186 169 264 1.02e-16 77.0
MS.gene03935.t1 AT3G58120 44.304 79 44 0 108 186 202 280 1.46e-15 74.3
MS.gene03935.t1 AT2G42380 34.783 115 64 1 91 205 169 272 4.05e-13 67.8
MS.gene03935.t1 AT2G40620 38.298 94 58 0 107 200 147 240 7.97e-12 64.3
MS.gene03935.t1 AT1G43700 39.362 94 57 0 107 200 193 286 9.30e-12 63.9
MS.gene03935.t1 AT1G06850 39.362 94 57 0 107 200 147 240 1.37e-11 63.5
MS.gene03935.t1 AT4G38900 36.559 93 59 0 108 200 394 486 2.32e-11 63.2
MS.gene03935.t1 AT4G38900 36.559 93 59 0 108 200 394 486 2.32e-11 63.2
MS.gene03935.t1 AT2G31370 30.769 130 88 1 81 210 176 303 2.41e-11 62.8
MS.gene03935.t1 AT2G31370 30.769 130 88 1 81 210 176 303 2.54e-11 62.8
MS.gene03935.t1 AT2G31370 30.769 130 88 1 81 210 176 303 2.54e-11 62.8
MS.gene03935.t1 AT2G31370 30.769 130 88 1 81 210 176 303 2.54e-11 62.8
MS.gene03935.t1 AT2G31370 30.769 130 88 1 81 210 176 303 2.54e-11 62.8
MS.gene03935.t1 AT2G31370 30.769 130 88 1 81 210 176 303 2.54e-11 62.8
MS.gene03935.t1 AT2G31370 30.769 130 88 1 81 210 176 303 2.54e-11 62.8
MS.gene03935.t1 AT1G06070 37.500 96 60 0 107 202 209 304 3.37e-11 62.4
MS.gene03935.t1 AT5G07160 38.710 93 57 0 108 200 48 140 5.47e-11 59.3

Find 50 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCAATTTCAAGTCTTAAT+TGG 0.219386 3.2:-55581164 None:intergenic
TCATGACCAAGATTTGATTT+TGG 0.228252 3.2:-55579859 None:intergenic
GCTCGATTATATTGCTGATT+TGG 0.235809 3.2:+55580509 MS.gene03935:CDS
CTAACCATGTTTGATTTCTT+AGG 0.274809 3.2:-55579697 None:intergenic
GCATACCGTTTGAGCCTCTT+TGG 0.280869 3.2:-55579958 None:intergenic
TTTCTTTAACCAGTTCAAAT+TGG 0.283027 3.2:+55582424 MS.gene03935:intron
TCAGCAGTGGTTGTTGACTA+TGG 0.374097 3.2:+55581134 MS.gene03935:CDS
ATAAGAGAGCTAAGGTGAAT+AGG 0.396711 3.2:+55581510 MS.gene03935:CDS
GCGGAAGGAGAAATATTTGC+AGG 0.408355 3.2:+55580533 MS.gene03935:CDS
TTCGACCATGGCAACCCTCT+TGG 0.414113 3.2:+55579749 MS.gene03935:CDS
TTGTACCAGTCATTCTCATT+TGG 0.425570 3.2:-55579645 None:intergenic
TCGATTTATGTGCAGAAGTT+CGG 0.433244 3.2:-55580476 None:intergenic
AGTGTACCAAAATCAAATCT+TGG 0.459311 3.2:+55579853 MS.gene03935:CDS
GTGCAGAAGTTCGGTTTGCT+AGG 0.469628 3.2:-55580467 None:intergenic
TGGATCCAAAGAGGCTCAAA+CGG 0.511736 3.2:+55579953 MS.gene03935:CDS
CAATTTCAAGTCTTAATTGG+TGG 0.516892 3.2:-55581161 None:intergenic
AAACAAGAGGCGAGTAGTAG+TGG 0.519978 3.2:+55579790 MS.gene03935:CDS
GATTGAGAATAAGAGAGCTA+AGG 0.531397 3.2:+55581502 MS.gene03935:CDS
GGCATCCAAATGAGAATGAC+TGG 0.534011 3.2:+55579640 MS.gene03935:CDS
TATTGCTGATTTGGAGCGGA+AGG 0.534850 3.2:+55580518 MS.gene03935:CDS
GAGCTAAGGTGAATAGGCTG+AGG 0.535457 3.2:+55581516 MS.gene03935:CDS
AGACTTCAACTTGTGGGCGA+AGG 0.537269 3.2:-55581104 None:intergenic
AACATGTTGCACACAGAAGA+GGG 0.550817 3.2:+55579667 MS.gene03935:CDS
TTGCACACAGAAGAGGGACC+TGG 0.552875 3.2:+55579673 MS.gene03935:CDS
ATGTTTGATTTCTTAGGCCC+AGG 0.557475 3.2:-55579691 None:intergenic
CTCTTCCAAGAGGGTTGCCA+TGG 0.560623 3.2:-55579754 None:intergenic
CATCATCAGCATTTCGACCA+TGG 0.570443 3.2:+55579737 MS.gene03935:CDS
TGCACACAGAAGAGGGACCT+GGG 0.596481 3.2:+55579674 MS.gene03935:CDS
TTGCTGAAGCACAAATCAAG+AGG 0.599181 3.2:+55581558 MS.gene03935:CDS
GCATCTGCATGTGTTAGTGT+TGG 0.599458 3.2:+55579910 MS.gene03935:CDS
ATGGTTAGACCCTTCTCACA+TGG 0.603263 3.2:+55579712 MS.gene03935:CDS
AAACATGTTGCACACAGAAG+AGG 0.606246 3.2:+55579666 MS.gene03935:CDS
GATGATGATCCATGTGAGAA+GGG 0.623366 3.2:-55579721 None:intergenic
AAAGAAAGGATACTTCAAGA+AGG 0.624481 3.2:+55581195 MS.gene03935:CDS
AGCTAAGGTGAATAGGCTGA+GGG 0.626172 3.2:+55581517 MS.gene03935:CDS
TTAACCAGTTCAAATTGGAG+AGG 0.630593 3.2:+55582429 MS.gene03935:intron
AGGTCAATGCTCTTCCAAGA+GGG 0.634364 3.2:-55579763 None:intergenic
ATGCACTACCACCACTGATG+TGG 0.638397 3.2:-55579891 None:intergenic
TACTCGCCTCTTGTTTACCG+AGG 0.639328 3.2:-55579783 None:intergenic
TGATGATGATCCATGTGAGA+AGG 0.644091 3.2:-55579722 None:intergenic
CATTGACCTCGGTAAACAAG+AGG 0.644199 3.2:+55579777 MS.gene03935:CDS
GATGAGAAGAACCACATCAG+TGG 0.648937 3.2:+55579880 MS.gene03935:CDS
ATTATATTGCTGATTTGGAG+CGG 0.651960 3.2:+55580514 MS.gene03935:CDS
GAGAAGAACCACATCAGTGG+TGG 0.658310 3.2:+55579883 MS.gene03935:CDS
GAGGTCAATGCTCTTCCAAG+AGG 0.660030 3.2:-55579764 None:intergenic
AAATTGGAGAGGAAGCATCA+AGG 0.662446 3.2:+55582440 MS.gene03935:CDS
TCTTGGAAGAGCATTGACCT+CGG 0.690835 3.2:+55579766 MS.gene03935:CDS
GGAGTCAAAGTAACTCCACA+AGG 0.691028 3.2:+55579811 MS.gene03935:CDS
TGGGCCTAAGAAATCAAACA+TGG 0.705886 3.2:+55579693 MS.gene03935:CDS
GAACTTCTGCACATAAATCG+AGG 0.709430 3.2:+55580478 MS.gene03935:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAATTTTTTATTAAAAATA+AGG - chr3.2:55580226-55580245 None:intergenic 0.0%
!! AATTTATTTCAATTTCAATT+TGG - chr3.2:55580715-55580734 None:intergenic 10.0%
!! AGAAAAAAAAAATCTAATAA+TGG + chr3.2:55580124-55580143 MS.gene03935:intron 10.0%
!! GAAAAAAAAAATCTAATAAT+GGG + chr3.2:55580125-55580144 MS.gene03935:intron 10.0%
!!! AGTATTTTTAACAATATTTT+TGG + chr3.2:55581599-55581618 MS.gene03935:intron 10.0%
!! GTCAATTATTTGTATTAATT+TGG + chr3.2:55580815-55580834 MS.gene03935:intron 15.0%
!! TAATAAAGAAACATATGTTA+TGG - chr3.2:55582274-55582293 None:intergenic 15.0%
!! TATCATACATGATAAAAATA+TGG + chr3.2:55581686-55581705 MS.gene03935:intron 15.0%
!!! ATTAGATTTTTTTTTTCTTC+AGG - chr3.2:55580122-55580141 None:intergenic 15.0%
!!! ATTTTAAAACAATCAATGTA+AGG - chr3.2:55581803-55581822 None:intergenic 15.0%
!!! GAATTTTTAAACAACAATTT+AGG - chr3.2:55581643-55581662 None:intergenic 15.0%
!!! TTTTAAAACAATCAATGTAA+GGG - chr3.2:55581802-55581821 None:intergenic 15.0%
!!! TTTTGTTTCAATTTTTTCAA+TGG - chr3.2:55580366-55580385 None:intergenic 15.0%
!! AAAATTGAAACAAAATACCT+CGG + chr3.2:55580371-55580390 MS.gene03935:intron 20.0%
!! AGATTAAACTGTTCAAATTA+AGG - chr3.2:55582101-55582120 None:intergenic 20.0%
!! ATAGATCAATTATGATTGAA+TGG - chr3.2:55580876-55580895 None:intergenic 20.0%
!! TGATAAAAAGTGAGAAAATA+TGG + chr3.2:55581757-55581776 MS.gene03935:intron 20.0%
!!! ATATTATATCGATTATGTGT+AGG - chr3.2:55580407-55580426 None:intergenic 20.0%
!!! CAAATGATATGTAGTTATTT+TGG - chr3.2:55581369-55581388 None:intergenic 20.0%
!!! TAAATTTGTCTTTTCTTTCA+AGG - chr3.2:55581912-55581931 None:intergenic 20.0%
! AAATTCTTTGATGTGGTAAT+CGG - chr3.2:55580789-55580808 None:intergenic 25.0%
! AACATACTCATGTGAAATAA+AGG - chr3.2:55581469-55581488 None:intergenic 25.0%
! ACAATTGAATTCCAAATTAC+AGG - chr3.2:55580910-55580929 None:intergenic 25.0%
! ACATACTCATGTGAAATAAA+GGG - chr3.2:55581468-55581487 None:intergenic 25.0%
! AGTTTGATGGGAATAATATT+TGG + chr3.2:55580072-55580091 MS.gene03935:intron 25.0%
! CAAATCAACTATATTAGTCA+GGG - chr3.2:55580316-55580335 None:intergenic 25.0%
! CAAATTGAAATTCTTTGATG+TGG - chr3.2:55580796-55580815 None:intergenic 25.0%
! CATAACACTAAAAGTTTGAT+GGG + chr3.2:55580060-55580079 MS.gene03935:intron 25.0%
! GTATAAACACTCGAAATAAA+TGG - chr3.2:55581277-55581296 None:intergenic 25.0%
! GTCAATATGAATATGTAAGT+AGG - chr3.2:55582229-55582248 None:intergenic 25.0%
! TATGAATATGTAAGTAGGTA+CGG - chr3.2:55582224-55582243 None:intergenic 25.0%
! TCAAATCAACTATATTAGTC+AGG - chr3.2:55580317-55580336 None:intergenic 25.0%
! TCATAACACTAAAAGTTTGA+TGG + chr3.2:55580059-55580078 MS.gene03935:intron 25.0%
! TGACATTCAATTAACATAGT+GGG + chr3.2:55582245-55582264 MS.gene03935:intron 25.0%
! TTGACATTCAATTAACATAG+TGG + chr3.2:55582244-55582263 MS.gene03935:intron 25.0%
! TTGTATACAGATATATGTTG+AGG + chr3.2:55581936-55581955 MS.gene03935:intron 25.0%
! TTTCTTTAACCAGTTCAAAT+TGG + chr3.2:55582424-55582443 MS.gene03935:intron 25.0%
!! TTTTATAGACTTCAACTTGT+GGG - chr3.2:55581113-55581132 None:intergenic 25.0%
!! TTTTTATAGACTTCAACTTG+TGG - chr3.2:55581114-55581133 None:intergenic 25.0%
!!! ATGAGTATGTTTATTTTCAG+TGG + chr3.2:55581478-55581497 MS.gene03935:intron 25.0%
!!! GAGATTTTTTTTGTATATGC+AGG + chr3.2:55581068-55581087 MS.gene03935:intron 25.0%
!!! TTTCATGTTGTTTTGCTATT+AGG - chr3.2:55582135-55582154 None:intergenic 25.0%
AAAGAAAGGATACTTCAAGA+AGG + chr3.2:55581195-55581214 MS.gene03935:CDS 30.0%
AAGTCTATAAAAATCAGCAG+TGG + chr3.2:55581121-55581140 MS.gene03935:CDS 30.0%
AGTGAGAAAATATGGATAGA+AGG + chr3.2:55581765-55581784 MS.gene03935:intron 30.0%
AGTGTACCAAAATCAAATCT+TGG + chr3.2:55579853-55579872 MS.gene03935:CDS 30.0%
ATACAGATATATGTTGAGGT+TGG + chr3.2:55581940-55581959 MS.gene03935:intron 30.0%
ATGAATATGTAAGTAGGTAC+GGG - chr3.2:55582223-55582242 None:intergenic 30.0%
CAGTTGGCAAGTTAAAAATA+TGG + chr3.2:55580018-55580037 MS.gene03935:intron 30.0%
TAATGGGAGTTGTTCTATTT+AGG + chr3.2:55580141-55580160 MS.gene03935:intron 30.0%
TGATCAAGCAATACAAAAAC+TGG + chr3.2:55579933-55579952 MS.gene03935:CDS 30.0%
TTTATTACAGCAGACAATCT+TGG + chr3.2:55582164-55582183 MS.gene03935:intron 30.0%
! CAATTTCAAGTCTTAATTGG+TGG - chr3.2:55581164-55581183 None:intergenic 30.0%
! CAGCAATTTCAAGTCTTAAT+TGG - chr3.2:55581167-55581186 None:intergenic 30.0%
! CTAACCATGTTTGATTTCTT+AGG - chr3.2:55579700-55579719 None:intergenic 30.0%
! GAATTTTCTACTGTTAGAAC+AGG + chr3.2:55582004-55582023 MS.gene03935:intron 30.0%
! TCTCTTCACAAGTTTTTGTT+TGG - chr3.2:55581041-55581060 None:intergenic 30.0%
! TTTTGTCTTCCATTGTTCTT+AGG + chr3.2:55580442-55580461 MS.gene03935:intron 30.0%
!! AGTTTTTGTTTGGGTAGATA+TGG - chr3.2:55581031-55581050 None:intergenic 30.0%
!! ATTATATTGCTGATTTGGAG+CGG + chr3.2:55580514-55580533 MS.gene03935:CDS 30.0%
!! CTCTTCACAAGTTTTTGTTT+GGG - chr3.2:55581040-55581059 None:intergenic 30.0%
!! TCATGACCAAGATTTGATTT+TGG - chr3.2:55579862-55579881 None:intergenic 30.0%
!!! TTATTAGTTTTGTTGCCTTG+TGG - chr3.2:55579829-55579848 None:intergenic 30.0%
AAAATTCAGACCGAAAAGCA+GGG - chr3.2:55581991-55582010 None:intergenic 35.0%
ACAAGAGTGGTATGGAAAAA+AGG + chr3.2:55581426-55581445 MS.gene03935:intron 35.0%
ACATGTTGCATTTATGTGTG+GGG - chr3.2:55581334-55581353 None:intergenic 35.0%
ATAAGAGAGCTAAGGTGAAT+AGG + chr3.2:55581510-55581529 MS.gene03935:CDS 35.0%
ATTTATGTGTGGGGGTTAAA+GGG - chr3.2:55581325-55581344 None:intergenic 35.0%
CACATGTTGCATTTATGTGT+GGG - chr3.2:55581335-55581354 None:intergenic 35.0%
GATTCTCATCTAAAGATCAC+AGG - chr3.2:55580669-55580688 None:intergenic 35.0%
GATTGAGAATAAGAGAGCTA+AGG + chr3.2:55581502-55581521 MS.gene03935:CDS 35.0%
GTTTATACGTAGACACACAT+AGG + chr3.2:55581289-55581308 MS.gene03935:intron 35.0%
TACAAAAACTGGATCCAAAG+AGG + chr3.2:55579944-55579963 MS.gene03935:CDS 35.0%
TACAAGTAGTGAAGCAGATA+CGG - chr3.2:55582333-55582352 None:intergenic 35.0%
TCACGTATCAACCTGTAATT+TGG + chr3.2:55580896-55580915 MS.gene03935:intron 35.0%
TCACTATCTATCGTATCTCA+AGG + chr3.2:55580562-55580581 MS.gene03935:intron 35.0%
TCGATTTATGTGCAGAAGTT+CGG - chr3.2:55580479-55580498 None:intergenic 35.0%
TGAATATGTAAGTAGGTACG+GGG - chr3.2:55582222-55582241 None:intergenic 35.0%
TGAGCAACACAAAAATCAGT+TGG + chr3.2:55580002-55580021 MS.gene03935:intron 35.0%
TGTTCTATTTAGGCTTGTCA+TGG + chr3.2:55580151-55580170 MS.gene03935:intron 35.0%
TGTTTGATCCTAACCAACAA+GGG + chr3.2:55580992-55581011 MS.gene03935:intron 35.0%
TTAACCAGTTCAAATTGGAG+AGG + chr3.2:55582429-55582448 MS.gene03935:intron 35.0%
TTGCTGTCAGAGAAAAAGAA+AGG + chr3.2:55581181-55581200 MS.gene03935:CDS 35.0%
TTGTACCAGTCATTCTCATT+TGG - chr3.2:55579648-55579667 None:intergenic 35.0%
TTGTTTGATCCTAACCAACA+AGG + chr3.2:55580991-55581010 MS.gene03935:intron 35.0%
TTTGTTTGGGTAGATATGGT+GGG - chr3.2:55581027-55581046 None:intergenic 35.0%
! AAATGCAACATGTGGTAATG+TGG + chr3.2:55581341-55581360 MS.gene03935:intron 35.0%
! AATGCAACATGTGGTAATGT+GGG + chr3.2:55581342-55581361 MS.gene03935:intron 35.0%
! GCTCGATTATATTGCTGATT+TGG + chr3.2:55580509-55580528 MS.gene03935:CDS 35.0%
! TTAGCCACACATTTAAGATC+TGG - chr3.2:55582052-55582071 None:intergenic 35.0%
!! TTTTGTTTGGGTAGATATGG+TGG - chr3.2:55581028-55581047 None:intergenic 35.0%
AAACATGTTGCACACAGAAG+AGG + chr3.2:55579666-55579685 MS.gene03935:CDS 40.0%
AAATTCAGACCGAAAAGCAG+GGG - chr3.2:55581990-55582009 None:intergenic 40.0%
AACATGTTGCACACAGAAGA+GGG + chr3.2:55579667-55579686 MS.gene03935:CDS 40.0%
ACACAGAATGTGTACAAGAG+TGG + chr3.2:55581413-55581432 MS.gene03935:intron 40.0%
ACCTCCAGATCTTAAATGTG+TGG + chr3.2:55582045-55582064 MS.gene03935:intron 40.0%
ACTCTTGTACACATTCTGTG+TGG - chr3.2:55581414-55581433 None:intergenic 40.0%
CAGATATATGTTGAGGTTGG+TGG + chr3.2:55581943-55581962 MS.gene03935:intron 40.0%
CATGTTGCATTTATGTGTGG+GGG - chr3.2:55581333-55581352 None:intergenic 40.0%
CATTTATGTGTGGGGGTTAA+AGG - chr3.2:55581326-55581345 None:intergenic 40.0%
CCACACATAAATGCAACATG+TGG + chr3.2:55581333-55581352 MS.gene03935:intron 40.0%
CCACATGTTGCATTTATGTG+TGG - chr3.2:55581336-55581355 None:intergenic 40.0%
CGAAACTACACACAAACACA+AGG - chr3.2:55581717-55581736 None:intergenic 40.0%
CTCTTGTACACATTCTGTGT+GGG - chr3.2:55581413-55581432 None:intergenic 40.0%
GAAAATTCAGACCGAAAAGC+AGG - chr3.2:55581992-55582011 None:intergenic 40.0%
GAACTTCTGCACATAAATCG+AGG + chr3.2:55580478-55580497 MS.gene03935:CDS 40.0%
GAATATGTAAGTAGGTACGG+GGG - chr3.2:55582221-55582240 None:intergenic 40.0%
GAATGTGTACAAGAGTGGTA+TGG + chr3.2:55581418-55581437 MS.gene03935:intron 40.0%
GAGAAAATCACTAAGGAGGA+GGG - chr3.2:55582199-55582218 None:intergenic 40.0%
GATGATGATCCATGTGAGAA+GGG - chr3.2:55579724-55579743 None:intergenic 40.0%
GTGTAGGAAATAAACAACCG+AGG - chr3.2:55580391-55580410 None:intergenic 40.0%
TATACGTAGACACACATAGG+TGG + chr3.2:55581292-55581311 MS.gene03935:intron 40.0%
TCTTGTACACATTCTGTGTG+GGG - chr3.2:55581412-55581431 None:intergenic 40.0%
TGCTAGGATCCTAAGAACAA+TGG - chr3.2:55580454-55580473 None:intergenic 40.0%
TGGGCCTAAGAAATCAAACA+TGG + chr3.2:55579693-55579712 MS.gene03935:CDS 40.0%
TTGCTGAAGCACAAATCAAG+AGG + chr3.2:55581558-55581577 MS.gene03935:CDS 40.0%
TTTATGTGTGGGGGTTAAAG+GGG - chr3.2:55581324-55581343 None:intergenic 40.0%
! ATATGGATCCCTTGTTGGTT+AGG - chr3.2:55581003-55581022 None:intergenic 40.0%
! ATGTTTGATTTCTTAGGCCC+AGG - chr3.2:55579694-55579713 None:intergenic 40.0%
! CTATTGCTCTAGATGTAGAG+CGG + chr3.2:55580763-55580782 MS.gene03935:intron 40.0%
! TGATGATGATCCATGTGAGA+AGG - chr3.2:55579725-55579744 None:intergenic 40.0%
!! AAATTGGAGAGGAAGCATCA+AGG + chr3.2:55582440-55582459 MS.gene03935:CDS 40.0%
AAACAAGAGGCGAGTAGTAG+TGG + chr3.2:55579790-55579809 MS.gene03935:CDS 45.0%
AGATCACAGGCTTTCACGAT+TGG - chr3.2:55580656-55580675 None:intergenic 45.0%
AGCTAAGGTGAATAGGCTGA+GGG + chr3.2:55581517-55581536 MS.gene03935:CDS 45.0%
AGGTCAATGCTCTTCCAAGA+GGG - chr3.2:55579766-55579785 None:intergenic 45.0%
ATCACAGGCTTTCACGATTG+GGG - chr3.2:55580654-55580673 None:intergenic 45.0%
ATGGTTAGACCCTTCTCACA+TGG + chr3.2:55579712-55579731 MS.gene03935:CDS 45.0%
CATCATCAGCATTTCGACCA+TGG + chr3.2:55579737-55579756 MS.gene03935:CDS 45.0%
CATTGACCTCGGTAAACAAG+AGG + chr3.2:55579777-55579796 MS.gene03935:CDS 45.0%
CTTGTACACATTCTGTGTGG+GGG - chr3.2:55581411-55581430 None:intergenic 45.0%
GATCACAGGCTTTCACGATT+GGG - chr3.2:55580655-55580674 None:intergenic 45.0%
GATGAGAAGAACCACATCAG+TGG + chr3.2:55579880-55579899 MS.gene03935:CDS 45.0%
GCATCTGCATGTGTTAGTGT+TGG + chr3.2:55579910-55579929 MS.gene03935:CDS 45.0%
GCGGAAGGAGAAATATTTGC+AGG + chr3.2:55580533-55580552 MS.gene03935:CDS 45.0%
GCTTCCTCTCCAATTTGAAC+TGG - chr3.2:55582436-55582455 None:intergenic 45.0%
GGAGAAAATCACTAAGGAGG+AGG - chr3.2:55582200-55582219 None:intergenic 45.0%
GGAGTCAAAGTAACTCCACA+AGG + chr3.2:55579811-55579830 MS.gene03935:CDS 45.0%
GGCATCCAAATGAGAATGAC+TGG + chr3.2:55579640-55579659 MS.gene03935:CDS 45.0%
TACGGGGGAGAAAATCACTA+AGG - chr3.2:55582206-55582225 None:intergenic 45.0%
TGGATCCAAAGAGGCTCAAA+CGG + chr3.2:55579953-55579972 MS.gene03935:CDS 45.0%
TGGGAATATGGATCCCTTGT+TGG - chr3.2:55581008-55581027 None:intergenic 45.0%
TTGTACACATTCTGTGTGGG+GGG - chr3.2:55581410-55581429 None:intergenic 45.0%
! GCCACACATTTAAGATCTGG+AGG - chr3.2:55582049-55582068 None:intergenic 45.0%
! GGGTAGATATGGTGGGAATA+TGG - chr3.2:55581020-55581039 None:intergenic 45.0%
! TCAGCAGTGGTTGTTGACTA+TGG + chr3.2:55581134-55581153 MS.gene03935:CDS 45.0%
!! TATTGCTGATTTGGAGCGGA+AGG + chr3.2:55580518-55580537 MS.gene03935:CDS 45.0%
!! TCTTGGAAGAGCATTGACCT+CGG + chr3.2:55579766-55579785 MS.gene03935:CDS 45.0%
!! ATTAAAATAAATATATATGT+TGG + chr3.2:55580241-55580260 MS.gene03935:intron 5.0%
AGACTTCAACTTGTGGGCGA+AGG - chr3.2:55581107-55581126 None:intergenic 50.0%
ATGCACTACCACCACTGATG+TGG - chr3.2:55579894-55579913 None:intergenic 50.0%
GAGAAGAACCACATCAGTGG+TGG + chr3.2:55579883-55579902 MS.gene03935:CDS 50.0%
GAGCTAAGGTGAATAGGCTG+AGG + chr3.2:55581516-55581535 MS.gene03935:CDS 50.0%
GAGGTCAATGCTCTTCCAAG+AGG - chr3.2:55579767-55579786 None:intergenic 50.0%
GCATACCGTTTGAGCCTCTT+TGG - chr3.2:55579961-55579980 None:intergenic 50.0%
GGGGGAGAAAATCACTAAGG+AGG - chr3.2:55582203-55582222 None:intergenic 50.0%
! GTGCAGAAGTTCGGTTTGCT+AGG - chr3.2:55580470-55580489 None:intergenic 50.0%
! TACTCGCCTCTTGTTTACCG+AGG - chr3.2:55579786-55579805 None:intergenic 50.0%
!! ATGTTGAGGTTGGTGGCATG+TGG + chr3.2:55581950-55581969 MS.gene03935:intron 50.0%
!! TGTTGAGGTTGGTGGCATGT+GGG + chr3.2:55581951-55581970 MS.gene03935:intron 50.0%
CTCTTCCAAGAGGGTTGCCA+TGG - chr3.2:55579757-55579776 None:intergenic 55.0%
TGCACACAGAAGAGGGACCT+GGG + chr3.2:55579674-55579693 MS.gene03935:CDS 55.0%
TTCGACCATGGCAACCCTCT+TGG + chr3.2:55579749-55579768 MS.gene03935:CDS 55.0%
TTGCACACAGAAGAGGGACC+TGG + chr3.2:55579673-55579692 MS.gene03935:CDS 55.0%
!! AGGTTGGTGGCATGTGGGAA+GGG + chr3.2:55581956-55581975 MS.gene03935:intron 55.0%
!! GGTTTGGAGCCCCTGCTTTT+CGG + chr3.2:55581978-55581997 MS.gene03935:intron 55.0%
GTGGCATGTGGGAAGGGGTT+TGG + chr3.2:55581962-55581981 MS.gene03935:intron 60.0%
!! GAGGTTGGTGGCATGTGGGA+AGG + chr3.2:55581955-55581974 MS.gene03935:intron 60.0%
!! GGTTGGTGGCATGTGGGAAG+GGG + chr3.2:55581957-55581976 MS.gene03935:intron 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 55579634 55582476 55579634 ID=MS.gene03935
chr3.2 mRNA 55579634 55582476 55579634 ID=MS.gene03935.t1;Parent=MS.gene03935
chr3.2 exon 55579634 55579974 55579634 ID=MS.gene03935.t1.exon1;Parent=MS.gene03935.t1
chr3.2 CDS 55579634 55579974 55579634 ID=cds.MS.gene03935.t1;Parent=MS.gene03935.t1
chr3.2 exon 55580464 55580554 55580464 ID=MS.gene03935.t1.exon2;Parent=MS.gene03935.t1
chr3.2 CDS 55580464 55580554 55580464 ID=cds.MS.gene03935.t1;Parent=MS.gene03935.t1
chr3.2 exon 55581090 55581216 55581090 ID=MS.gene03935.t1.exon3;Parent=MS.gene03935.t1
chr3.2 CDS 55581090 55581216 55581090 ID=cds.MS.gene03935.t1;Parent=MS.gene03935.t1
chr3.2 exon 55581498 55581579 55581498 ID=MS.gene03935.t1.exon4;Parent=MS.gene03935.t1
chr3.2 CDS 55581498 55581579 55581498 ID=cds.MS.gene03935.t1;Parent=MS.gene03935.t1
chr3.2 exon 55582437 55582476 55582437 ID=MS.gene03935.t1.exon5;Parent=MS.gene03935.t1
chr3.2 CDS 55582437 55582476 55582437 ID=cds.MS.gene03935.t1;Parent=MS.gene03935.t1
Gene Sequence

>MS.gene03935

ATGAAGGGCATCCAAATGAGAATGACTGGTACAAACATGTTGCACACAGAAGAGGGACCTGGGCCTAAGAAATCAAACATGGTTAGACCCTTCTCACATGGATCATCATCAGCATTTCGACCATGGCAACCCTCTTGGAAGAGCATTGACCTCGGTAAACAAGAGGCGAGTAGTAGTGGAGTCAAAGTAACTCCACAAGGCAACAAAACTAATAACATTAGTGTACCAAAATCAAATCTTGGTCATGATGAGAAGAACCACATCAGTGGTGGTAGTGCATCTGCATGTGTTAGTGTTGGTGATCAAGCAATACAAAAACTGGATCCAAAGAGGCTCAAACGGTATGCTTGTGTTACTTATTGTTGTTGTGAGCAACACAAAAATCAGTTGGCAAGTTAAAAATATGGAAGATCGAAATTTTTGATTCATAACACTAAAAGTTTGATGGGAATAATATTTGGTTTTTATTACATTTTTTTGTAAAACCTGAAGAAAAAAAAAATCTAATAATGGGAGTTGTTCTATTTAGGCTTGTCATGGTCAACTGTGATTTTAATAATAAATTTAATAAATTTTGTAATTGTTTTCACCTTATTTTTAATAAAAAATTAAAATAAATATATATGTTGGTTTCATTTTCATGTTATTTAGATTAGATTTATCATCTATGAATGTGATACCCTGACTAATATAGTTGATTTGATTGATTTTATTCTAATCAAATCTAAACCATTGAAAAAATTGAAACAAAATACCTCGGTTGTTTATTTCCTACACATAATCGATATAATATATTTTTATTTTCATCTTTTGTCTTCCATTGTTCTTAGGATCCTAGCAAACCGAACTTCTGCACATAAATCGAGGTTGAAAAAGCTCGATTATATTGCTGATTTGGAGCGGAAGGAGAAATATTTGCAGGTTAACATCACTATCTATCGTATCTCAAGGATTGTAATTTATGAATTTTTTGTCTTATTAAAATATGTTGACGCGTCTCGAAGAGAACTAGATTATCCCCAATCGTGAAAGCCTGTGATCTTTAGATGAGAATCAAACAACGCAAATTCTAATTTCACCAAATTGAAATTGAAATAAATTCATATAATTTGTGTTGTTTGATCATCATCTATTGCTCTAGATGTAGAGCGGCCGATTACCACATCAAAGAATTTCAATTTGTCAATTATTTGTATTAATTTGGTGTAGACATATACGCAACGATCTTACTGATTTGAACCATTCAATCATAATTGATCTATTCACGTATCAACCTGTAATTTGGAATTCAATTGTAAAATTGACATGTGACTCATTCGATCTTGATCTGATTATTTGAATGACATAACTCAATAAATTGTTTGATCCTAACCAACAAGGGATCCATATTCCCACCATATCTACCCAAACAAAAACTTGTGAAGAGATGATTTTGAGATTTTTTTTGTATATGCAGGCTGAGTTATCTTTCCTTCGCCCACAAGTTGAAGTCTATAAAAATCAGCAGTGGTTGTTGACTATGGAACACCACCAATTAAGACTTGAAATTGCTGTCAGAGAAAAAGAAAGGATACTTCAAGAAGGTGATAATACTCATTTGTCTTTATTTTATATTTCTTGCATTTATTCTCGTGTCTCTACCATTTATTTCGAGTGTTTATACGTAGACACACATAGGTGGCATACACCCCTTTAACCCCCACACATAAATGCAACATGTGGTAATGTGGGTCCAAAATAACTACATATCATTTGTTACACATTACAAAAATACCCCCCACACAGAATGTGTACAAGAGTGGTATGGAAAAAAGGTGTCTATCTATATTTTCCCTTTATTTCACATGAGTATGTTTATTTTCAGTGGAGATTGAGAATAAGAGAGCTAAGGTGAATAGGCTGAGGGAGCTTCAGAATAGACTTGTTGCTGAAGCACAAATCAAGAGGTATGTTGAAATGCGTACTAGTATTTTTAACAATATTTTTGGACTAATATAACTCATATGCCTAAATTGTTGTTTAAAAATTCATAATAGTATATTAAAAATAATATATCATACATGATAAAAATATGGTGCTTCCTTGTGTTTGTGTGTAGTTTCGTATTCTGTGTGTGTTGTATATGATAAAAAGTGAGAAAATATGGATAGAAGGATACAATGTTACCCTTACATTGATTGTTTTAAAATTTGTATTTAAACAACACAACTCAAATATAAATTATGTGTGTGTTCATGCATGCATGTGTATATATATGTATAATCTTTGTTGATATCCTTGAAAGAAAAGACAAATTTATTGATTGTATACAGATATATGTTGAGGTTGGTGGCATGTGGGAAGGGGTTTGGAGCCCCTGCTTTTCGGTCTGAATTTTCTACTGTTAGAACAGGACGTCGTAACAGATTAAAACCTCCAGATCTTAAATGTGTGGCTAATATTGTTTACAATGATTTTATAACTTCCTTAATTTGAACAGTTTAATCTTTAATAAACAACCTAATAGCAAAACAACATGAAAATTTTGTGATTTATTACAGCAGACAATCTTGGTTCTTGTTTCCCTCCTCCTTAGTGATTTTCTCCCCCGTACCTACTTACATATTCATATTGACATTCAATTAACATAGTGGGCAACCATAACATATGTTTCTTTATTATATATATATATATATATATATATATATCATGTTTGTCCGTATCTGCTTCACTACTTGTATGATGTTTATCTACACACACACACACACATATATATAATACACACACATATTTTTAACTATATTTTGCTAATTTCTTTAACCAGTTCAAATTGGAGAGGAAGCATCAAGGATAATGCAAACTGA
Protein sequence

>MS.gene03935.t1

MKGIQMRMTGTNMLHTEEGPGPKKSNMVRPFSHGSSSAFRPWQPSWKSIDLGKQEASSSGVKVTPQGNKTNNISVPKSNLGHDEKNHISGGSASACVSVGDQAIQKLDPKRLKRILANRTSAHKSRLKKLDYIADLERKEKYLQAELSFLRPQVEVYKNQQWLLTMEHHQLRLEIAVREKERILQEVEIENKRAKVNRLRELQNRLVAEAQIKSSNWRGSIKDNAN