AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039370

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039370.t1 MTR_1g047060 53.000 100 38 3 110 207 1 93 1.18e-25 97.1
MS.gene039370.t1 MTR_4g101680 33.758 157 81 6 4 146 7 154 3.14e-17 80.1
MS.gene039370.t1 MTR_5g021710 33.117 154 86 5 4 146 8 155 1.01e-16 78.6
MS.gene039370.t1 MTR_4g094302 30.380 158 86 6 4 147 11 158 2.07e-16 75.5
MS.gene039370.t1 MTR_1g069805 34.641 153 82 7 4 146 10 154 3.23e-16 76.3
MS.gene039370.t1 MTR_7g100990 33.750 160 80 7 4 145 11 162 5.84e-16 76.3
MS.gene039370.t1 MTR_8g023840 31.746 189 108 8 4 180 11 190 8.58e-16 76.3
MS.gene039370.t1 MTR_1g008740 33.758 157 86 6 2 146 25 175 1.30e-15 75.5
MS.gene039370.t1 MTR_2g080010 31.737 167 83 7 4 146 15 174 1.54e-15 75.5
MS.gene039370.t1 MTR_1g008740 33.758 157 86 6 2 146 11 161 1.57e-15 75.5
MS.gene039370.t1 MTR_8g076110 34.194 155 83 6 4 146 6 153 1.83e-15 74.7
MS.gene039370.t1 MTR_4g094302 33.333 129 77 4 4 132 11 130 1.89e-15 72.0
MS.gene039370.t1 MTR_5g041940 30.625 160 85 6 4 146 3 153 2.71e-15 73.6
MS.gene039370.t1 MTR_4g089135 35.556 135 74 5 4 132 15 142 3.82e-15 74.3
MS.gene039370.t1 MTR_2g093810 31.875 160 83 6 4 145 14 165 5.11e-15 73.6
MS.gene039370.t1 MTR_3g093040 34.161 161 76 10 4 146 108 256 8.83e-15 72.8
MS.gene039370.t1 MTR_4g035590 29.798 198 112 10 4 188 8 191 9.11e-15 73.2
MS.gene039370.t1 MTR_3g109340 33.121 157 86 6 2 146 20 169 9.58e-15 73.2
MS.gene039370.t1 MTR_3g093050 33.742 163 80 10 1 146 19 170 1.40e-14 73.2
MS.gene039370.t1 MTR_8g023860 29.189 185 112 6 1 174 9 185 2.09e-14 72.4
MS.gene039370.t1 MTR_8g023900 33.974 156 80 8 4 145 12 158 2.21e-14 72.4
MS.gene039370.t1 MTR_8g023900 29.834 181 102 8 7 173 196 365 2.69e-12 66.2
MS.gene039370.t1 MTR_3g093050 33.742 163 80 10 1 146 19 170 2.28e-14 72.8
MS.gene039370.t1 MTR_3g096140 31.875 160 85 7 2 146 5 155 2.68e-14 71.2
MS.gene039370.t1 MTR_8g467490 25.630 238 132 9 2 203 12 240 2.90e-14 72.0
MS.gene039370.t1 MTR_3g064580 33.962 159 80 9 4 146 6 155 5.77e-14 71.6
MS.gene039370.t1 MTR_3g096140 31.875 160 85 7 2 146 5 155 5.96e-14 70.9
MS.gene039370.t1 MTR_1g090720 34.356 163 79 7 4 146 42 196 1.65e-13 70.1
MS.gene039370.t1 MTR_5g014300 32.075 159 84 8 4 145 6 157 2.22e-13 68.9
MS.gene039370.t1 MTR_5g069030 34.161 161 76 10 4 146 25 173 4.30e-13 68.9
MS.gene039370.t1 MTR_6g011860 31.515 165 83 9 4 146 15 171 4.31e-13 68.6
MS.gene039370.t1 MTR_3g116070 31.293 147 89 5 4 144 23 163 4.96e-13 68.2
MS.gene039370.t1 MTR_7g005280 31.613 155 83 7 4 146 15 158 8.31e-13 66.6
MS.gene039370.t1 MTR_5g076850 32.704 159 81 9 4 146 6 154 1.01e-12 67.8
MS.gene039370.t1 MTR_8g024480 27.381 168 88 7 4 146 15 173 2.01e-12 66.6
MS.gene039370.t1 MTR_6g084430 32.051 156 86 7 2 146 3 149 2.61e-12 65.9
MS.gene039370.t1 MTR_2g079990 35.294 136 71 7 4 132 16 141 2.88e-12 65.9
MS.gene039370.t1 MTR_7g085220 28.571 168 87 8 4 146 8 167 8.92e-12 64.3
MS.gene039370.t1 MTR_2g078700 30.818 159 86 6 4 146 23 173 1.51e-11 63.9
MS.gene039370.t1 MTR_3g096400 29.518 166 93 5 4 152 7 165 3.07e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039370.t1 AT4G36160 33.544 158 88 5 4 150 10 161 1.32e-18 84.3
MS.gene039370.t1 AT4G36160 33.544 158 88 5 4 150 10 161 1.32e-18 84.3
MS.gene039370.t1 AT4G36160 33.544 158 88 5 4 150 14 165 1.47e-18 84.3
MS.gene039370.t1 AT1G71930 33.121 157 88 5 4 149 9 159 7.49e-18 81.6
MS.gene039370.t1 AT1G71930 33.121 157 88 5 4 149 9 159 7.49e-18 81.6
MS.gene039370.t1 AT2G24430 35.669 157 82 6 2 146 14 163 2.04e-17 80.5
MS.gene039370.t1 AT2G24430 35.669 157 82 6 2 146 14 163 2.04e-17 80.5
MS.gene039370.t1 AT2G18060 33.117 154 86 5 4 146 9 156 3.19e-17 80.5
MS.gene039370.t1 AT2G18060 33.117 154 86 5 4 146 9 156 3.19e-17 80.5
MS.gene039370.t1 AT4G28530 33.133 166 85 5 4 147 10 171 3.68e-16 77.0
MS.gene039370.t1 AT1G69490 32.500 160 82 7 4 146 9 159 6.75e-16 75.5
MS.gene039370.t1 AT1G26870 33.974 156 86 6 2 149 14 160 2.01e-15 75.5
MS.gene039370.t1 AT3G10490 33.544 158 82 7 4 146 27 176 2.21e-15 73.6
MS.gene039370.t1 AT2G27300 29.452 146 93 4 4 145 14 153 4.53e-15 73.9
MS.gene039370.t1 AT4G10350 33.962 159 80 9 4 146 9 158 4.53e-15 73.9
MS.gene039370.t1 AT4G17980 33.333 159 82 7 4 145 6 157 5.57e-15 72.8
MS.gene039370.t1 AT4G17980 33.333 159 82 7 4 145 6 157 7.15e-15 72.8
MS.gene039370.t1 AT5G63790 33.333 162 80 7 4 147 50 201 1.04e-14 72.8
MS.gene039370.t1 AT5G63790 33.333 162 80 7 4 147 60 211 1.28e-14 72.4
MS.gene039370.t1 AT1G54330 32.026 153 87 6 4 146 6 151 1.70e-14 72.0
MS.gene039370.t1 AT3G03200 34.375 160 78 9 4 146 6 155 1.98e-14 72.8
MS.gene039370.t1 AT2G02450 32.778 180 97 8 6 174 53 219 2.29e-14 72.0
MS.gene039370.t1 AT5G64530 33.588 131 74 4 4 134 3 120 2.83e-14 69.7
MS.gene039370.t1 AT5G64530 33.588 131 74 4 4 134 3 120 2.85e-14 68.9
MS.gene039370.t1 AT2G02450 32.778 180 97 8 6 174 53 219 3.37e-14 72.0
MS.gene039370.t1 AT3G10480 33.121 157 83 7 4 146 27 175 5.51e-14 71.2
MS.gene039370.t1 AT4G35580 31.902 163 89 8 1 149 6 160 7.45e-14 71.2
MS.gene039370.t1 AT4G35580 31.902 163 89 8 1 149 6 160 7.96e-14 70.9
MS.gene039370.t1 AT4G35580 31.902 163 89 8 1 149 6 160 9.07e-14 70.9
MS.gene039370.t1 AT5G39610 32.278 158 83 7 4 146 20 168 1.22e-13 69.3
MS.gene039370.t1 AT1G61110 34.058 138 75 6 4 134 16 144 2.15e-13 68.9
MS.gene039370.t1 AT5G04410 31.646 158 84 6 4 146 9 157 2.76e-13 69.3
MS.gene039370.t1 AT5G39820 33.835 133 75 5 6 132 22 147 3.83e-13 68.6
MS.gene039370.t1 AT1G32770 28.729 181 85 8 4 149 16 187 5.41e-13 68.2
MS.gene039370.t1 AT3G10500 32.278 158 83 7 4 146 9 157 6.82e-13 68.2
MS.gene039370.t1 AT3G18400 31.646 158 87 8 2 147 3 151 1.02e-12 67.0
MS.gene039370.t1 AT2G46770 27.907 172 86 7 4 146 16 178 1.15e-12 67.0
MS.gene039370.t1 AT3G29035 31.013 158 85 6 4 146 24 172 1.48e-12 66.6
MS.gene039370.t1 AT4G27410 29.240 171 86 7 4 146 14 177 1.83e-12 66.2
MS.gene039370.t1 AT3G15510 29.814 161 82 7 10 146 23 176 2.25e-12 66.2
MS.gene039370.t1 AT5G61430 32.278 158 83 7 4 146 16 164 2.45e-12 66.2
MS.gene039370.t1 AT3G15170 30.818 159 86 7 3 145 19 169 2.53e-12 65.9
MS.gene039370.t1 AT5G22290 28.571 147 90 6 6 145 23 161 3.14e-12 65.9
MS.gene039370.t1 AT5G24590 30.380 158 87 7 4 146 13 162 4.82e-12 65.5
MS.gene039370.t1 AT2G17040 30.323 155 82 7 6 146 8 150 5.48e-12 64.7
MS.gene039370.t1 AT5G53950 29.814 161 89 6 2 146 15 167 6.96e-12 65.1
MS.gene039370.t1 AT1G32870 32.331 133 79 5 4 132 10 135 9.15e-12 64.7
MS.gene039370.t1 AT3G04060 33.333 159 81 9 4 146 20 169 9.63e-12 64.3
MS.gene039370.t1 AT1G32870 32.331 133 79 5 4 132 10 135 1.04e-11 64.7
MS.gene039370.t1 AT1G32870 32.331 133 79 5 4 132 46 171 1.33e-11 64.3
MS.gene039370.t1 AT1G34190 30.380 158 90 6 2 146 14 164 1.52e-11 64.3
MS.gene039370.t1 AT5G46590 32.374 139 80 6 4 135 6 137 2.55e-11 62.8
MS.gene039370.t1 AT5G04395 32.000 150 79 7 4 135 28 172 3.94e-11 60.8

Find 49 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAACTAATGCTTTCAATTA+TGG 0.184656 6.3:+44006269 MS.gene039370:CDS
CAATGGTTCTGACTTGATTA+AGG 0.258416 6.3:+44004116 MS.gene039370:CDS
GGCAATGTAAGATTGGATTT+TGG 0.279853 6.3:+44004250 MS.gene039370:CDS
CCTTGGGTGACGGAAGAAAA+AGG 0.350861 6.3:-44004187 None:intergenic
ATTGAAAGCATTAGTTGCTC+TGG 0.380713 6.3:-44006264 None:intergenic
ATGGATCTGGATGTTGAGTT+TGG 0.395501 6.3:+44004579 MS.gene039370:CDS
CCTCATCTGCTCATCAACTT+TGG 0.414860 6.3:-44004229 None:intergenic
GAAGAGGTTCAAAATTTCAA+TGG 0.434760 6.3:+44004099 MS.gene039370:CDS
GGAGTAAGACGCAATTCAAA+TGG 0.441267 6.3:-44004162 None:intergenic
GAATTTCTTCCACCTGGTGT+TGG 0.452100 6.3:+44004021 MS.gene039370:CDS
GCTGTTCGAGACATTATTGT+TGG 0.457958 6.3:+44004285 MS.gene039370:CDS
GCAATTCAAATGGGTCATAC+TGG 0.459319 6.3:-44004152 None:intergenic
CAAATGGGTCATACTGGTAC+AGG 0.462094 6.3:-44004146 None:intergenic
CAGATGAGGCAATGTAAGAT+TGG 0.462721 6.3:+44004243 MS.gene039370:CDS
TTGAAAGCATTAGTTGCTCT+GGG 0.473709 6.3:-44006263 None:intergenic
CGGAGTTACTCAGAAACCTA+TGG 0.482750 6.3:+44004656 MS.gene039370:CDS
AACACACGACAAAGAACAAA+AGG 0.484780 6.3:-44004540 None:intergenic
TCAATTAATTTACACAAGAT+CGG 0.501330 6.3:-44006313 None:intergenic
GTGAAGCAGTAAAATTCCCT+TGG 0.511128 6.3:-44004204 None:intergenic
AGAATGGCATCAAAACTAGT+TGG 0.512078 6.3:+44004370 MS.gene039370:CDS
CTGCCCACCAGAGATGGATC+TGG 0.513629 6.3:+44004566 MS.gene039370:CDS
TCAACATCCAGATCCATCTC+TGG 0.528153 6.3:-44004573 None:intergenic
CACTCTTGCTAACAATCCTC+AGG 0.528444 6.3:+44004407 MS.gene039370:CDS
GCAATGGAATTTCTTCCACC+TGG 0.534570 6.3:+44004015 None:intergenic
AGTAAAATTCCCTTGGGTGA+CGG 0.539767 6.3:-44004197 None:intergenic
GAGTAAGACGCAATTCAAAT+GGG 0.549774 6.3:-44004161 None:intergenic
TGAAGCAGTAAAATTCCCTT+GGG 0.559532 6.3:-44004203 None:intergenic
CCAAAGTTGATGAGCAGATG+AGG 0.560720 6.3:+44004229 MS.gene039370:CDS
ACATCCAGATCCATCTCTGG+TGG 0.568257 6.3:-44004570 None:intergenic
GGAGTTACTCAGAAACCTAT+GGG 0.580237 6.3:+44004657 MS.gene039370:CDS
GAAGGGATGAAGCCAACACC+AGG 0.588550 6.3:-44004033 None:intergenic
TTTGGAGCAGATGTTGATGA+AGG 0.590115 6.3:+44004597 MS.gene039370:CDS
ATAGGAAATTCCGCTCAGAA+TGG 0.595921 6.3:+44004354 MS.gene039370:CDS
GTTTGACTGCCCACCAGAGA+TGG 0.602762 6.3:+44004560 MS.gene039370:CDS
GAAGGTGATGCTACTAGAGA+TGG 0.609350 6.3:+44004615 MS.gene039370:CDS
GGCTCTGCTAACAAGATGAA+CGG 0.613032 6.3:+44004636 MS.gene039370:CDS
TGTTGGAACTGATAACGTGT+TGG 0.614058 6.3:+44004302 MS.gene039370:CDS
TAACAAGGAGTTCATCAGAA+GGG 0.616296 6.3:-44004050 None:intergenic
TGGAACTGATAACGTGTTGG+TGG 0.634013 6.3:+44004305 MS.gene039370:CDS
TGACGATGTTGTCTTGCACA+TGG 0.636821 6.3:+44006230 MS.gene039370:CDS
TGGCAAGGTAGTAGATAACA+AGG 0.641793 6.3:-44004065 None:intergenic
ATAACAAGGAGTTCATCAGA+AGG 0.650392 6.3:-44004051 None:intergenic
CATCCAGATCCATCTCTGGT+GGG 0.656418 6.3:-44004569 None:intergenic
GGGATGAAGCCAACACCAGG+TGG 0.665656 6.3:-44004030 None:intergenic
GGAACTGATAACGTGTTGGT+GGG 0.675682 6.3:+44004306 MS.gene039370:CDS
GAGTTACTCAGAAACCTATG+GGG 0.699471 6.3:+44004658 MS.gene039370:CDS
AGTGCTGCTGTTGAGCAACG+CGG 0.701822 6.3:+44004702 MS.gene039370:CDS
TGAAAGCATTAGTTGCTCTG+GGG 0.714933 6.3:-44006262 None:intergenic
AGTTACTCAGAAACCTATGG+GGG 0.738835 6.3:+44004659 MS.gene039370:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAATAAAATTGTAATG+AGG - chr6.3:44005605-44005624 None:intergenic 10.0%
!!! TATTTTTAAAATTATTATGC+AGG + chr6.3:44004515-44004534 MS.gene039370:intron 10.0%
!! ATATGAATTAAAATAATCCT+AGG + chr6.3:44005514-44005533 MS.gene039370:intron 15.0%
!! CTTTGATTAAATAAAATCAA+CGG + chr6.3:44005913-44005932 MS.gene039370:intron 15.0%
!! TATTATTATTATTATGAGTC+AGG + chr6.3:44005099-44005118 MS.gene039370:intron 15.0%
!!! GTATTTTAATTATTCAGATA+TGG + chr6.3:44005741-44005760 MS.gene039370:intron 15.0%
!!! TTTTAATTCATATTCAATCA+TGG - chr6.3:44005507-44005526 None:intergenic 15.0%
!! AAAAAAATACATCACATGAA+TGG - chr6.3:44004868-44004887 None:intergenic 20.0%
!! AATACATTAAATAATCATCG+AGG - chr6.3:44004475-44004494 None:intergenic 20.0%
!! AATATAAAGAGAGATCAAAA+TGG - chr6.3:44004777-44004796 None:intergenic 20.0%
!! AGAAGAAGAATAATATTCAT+AGG - chr6.3:44005326-44005345 None:intergenic 20.0%
!! ATAAGATCAACAACATTAAT+TGG - chr6.3:44004802-44004821 None:intergenic 20.0%
!! CTTATGATAACAATTACAAT+TGG + chr6.3:44005415-44005434 MS.gene039370:intron 20.0%
!! TGATAATTCTCAAAACATAT+AGG + chr6.3:44004981-44005000 MS.gene039370:intron 20.0%
!!! AAAGAAACATGGATTAATTA+TGG - chr6.3:44005172-44005191 None:intergenic 20.0%
!!! AAGAAACATGGATTAATTAT+GGG - chr6.3:44005171-44005190 None:intergenic 20.0%
!!! CGTTGATTTTATTTAATCAA+AGG - chr6.3:44005915-44005934 None:intergenic 20.0%
!!! TCTCTTTTTATGTTCTATAT+AGG + chr6.3:44004336-44004355 MS.gene039370:CDS 20.0%
! AAAAACTCAAACTGAAAACA+TGG + chr6.3:44005245-44005264 MS.gene039370:intron 25.0%
! AAGAATAATATTCATAGGAG+TGG - chr6.3:44005321-44005340 None:intergenic 25.0%
! AGAACAAAGAGAATTATGAT+AGG + chr6.3:44005787-44005806 MS.gene039370:intron 25.0%
! AGAATAATATTCATAGGAGT+GGG - chr6.3:44005320-44005339 None:intergenic 25.0%
! ATACACAAGAAAAAGAAACA+TGG - chr6.3:44005183-44005202 None:intergenic 25.0%
! ATAGGATTATGTTTCCAATT+TGG + chr6.3:44005805-44005824 MS.gene039370:intron 25.0%
! TAAAAGCAATAATTGTGTGT+GGG - chr6.3:44005217-44005236 None:intergenic 25.0%
! TAGGATTATGTTTCCAATTT+GGG + chr6.3:44005806-44005825 MS.gene039370:intron 25.0%
! TTACATTTAGTAGCAAAGAT+TGG - chr6.3:44004897-44004916 None:intergenic 25.0%
!! CAACTTTTCATTTCATGTTA+TGG + chr6.3:44006126-44006145 MS.gene039370:intron 25.0%
!! GTTTAAAACGATAAAATCCT+AGG - chr6.3:44005534-44005553 None:intergenic 25.0%
!! TCAAATTTCACAGATTTTGA+AGG + chr6.3:44004729-44004748 MS.gene039370:CDS 25.0%
!!! AACCTCTTCATTATTTTTGT+TGG - chr6.3:44004088-44004107 None:intergenic 25.0%
AATAATATTCATAGGAGTGG+GGG - chr6.3:44005318-44005337 None:intergenic 30.0%
AATGATTACCAAACCCAAAT+TGG - chr6.3:44005822-44005841 None:intergenic 30.0%
AGTGTGTGTGATTGAAAAAA+AGG + chr6.3:44005854-44005873 MS.gene039370:intron 30.0%
ATACGAGGAGTTAAATAAGA+GGG - chr6.3:44005362-44005381 None:intergenic 30.0%
ATGTTATGGTAAAGACTAGA+AGG + chr6.3:44006140-44006159 MS.gene039370:intron 30.0%
ATTACAATTGGAGAGGAATA+TGG + chr6.3:44005427-44005446 MS.gene039370:intron 30.0%
CTAAAAGCAATAATTGTGTG+TGG - chr6.3:44005218-44005237 None:intergenic 30.0%
GAAGAGGTTCAAAATTTCAA+TGG + chr6.3:44004099-44004118 MS.gene039370:CDS 30.0%
GAATAATATTCATAGGAGTG+GGG - chr6.3:44005319-44005338 None:intergenic 30.0%
GATAACAATTACAATTGGAG+AGG + chr6.3:44005420-44005439 MS.gene039370:intron 30.0%
GCAACTAATGCTTTCAATTA+TGG + chr6.3:44006269-44006288 MS.gene039370:CDS 30.0%
TAAAATCAACGGTTGAGATT+TGG + chr6.3:44005924-44005943 MS.gene039370:intron 30.0%
TGCCAACAAAAATAATGAAG+AGG + chr6.3:44004083-44004102 MS.gene039370:CDS 30.0%
TGTCTACAAAATGAATCGTA+TGG + chr6.3:44005561-44005580 MS.gene039370:intron 30.0%
! AATTGGTTCAATTAGCATGT+AGG + chr6.3:44005684-44005703 MS.gene039370:intron 30.0%
! ATACTCAACGATTCTCTTTT+GGG + chr6.3:44005275-44005294 MS.gene039370:intron 30.0%
! ATGGAATATATTTTACCTGC+AGG - chr6.3:44004758-44004777 None:intergenic 30.0%
! CAAAATGAATCGTATGGTTT+TGG + chr6.3:44005567-44005586 MS.gene039370:intron 30.0%
! CGTCAGTTCTTTTAATCTAA+AGG + chr6.3:44005145-44005164 MS.gene039370:intron 30.0%
! TGGAATATATTTTACCTGCA+GGG - chr6.3:44004757-44004776 None:intergenic 30.0%
! TTATGTTTCCAATTTGGGTT+TGG + chr6.3:44005811-44005830 MS.gene039370:intron 30.0%
!!! CTTCATTATTTTTGTTGGCA+AGG - chr6.3:44004083-44004102 None:intergenic 30.0%
AACAAAGTCACCACAAGTTT+GGG + chr6.3:44005651-44005670 MS.gene039370:intron 35.0%
AACACACGACAAAGAACAAA+AGG - chr6.3:44004543-44004562 None:intergenic 35.0%
AAGAACTGACGAATAAGCTT+TGG - chr6.3:44005136-44005155 None:intergenic 35.0%
AATCCTCAGGTATGGAATTT+GGG + chr6.3:44004420-44004439 MS.gene039370:intron 35.0%
AGAATGGCATCAAAACTAGT+TGG + chr6.3:44004370-44004389 MS.gene039370:CDS 35.0%
AGGAGTTAAATAAGAGGGAA+AGG - chr6.3:44005357-44005376 None:intergenic 35.0%
ATAACAAGGAGTTCATCAGA+AGG - chr6.3:44004054-44004073 None:intergenic 35.0%
CATACGAGGAGTTAAATAAG+AGG - chr6.3:44005363-44005382 None:intergenic 35.0%
GAGTAAGACGCAATTCAAAT+GGG - chr6.3:44004164-44004183 None:intergenic 35.0%
GTATGTATTGCAACACATGA+AGG + chr6.3:44005378-44005397 MS.gene039370:intron 35.0%
TAACAAGGAGTTCATCAGAA+GGG - chr6.3:44004053-44004072 None:intergenic 35.0%
TGAAGCAGTAAAATTCCCTT+GGG - chr6.3:44004206-44004225 None:intergenic 35.0%
! ATTGGATTTTGGATGCAGAA+GGG + chr6.3:44004261-44004280 MS.gene039370:CDS 35.0%
! GATACTCAACGATTCTCTTT+TGG + chr6.3:44005274-44005293 MS.gene039370:intron 35.0%
! GGCAATGTAAGATTGGATTT+TGG + chr6.3:44004250-44004269 MS.gene039370:CDS 35.0%
! TGAATTGCTTTGCTCGTTTT+TGG + chr6.3:44006177-44006196 MS.gene039370:intron 35.0%
!! ATTGAAAGCATTAGTTGCTC+TGG - chr6.3:44006267-44006286 None:intergenic 35.0%
!! CAATGGTTCTGACTTGATTA+AGG + chr6.3:44004116-44004135 MS.gene039370:CDS 35.0%
!! TTGAAAGCATTAGTTGCTCT+GGG - chr6.3:44006266-44006285 None:intergenic 35.0%
!!! ATCGTATGGTTTTGGTAGAA+TGG + chr6.3:44005575-44005594 MS.gene039370:intron 35.0%
AGGACGTGATTTGAAGAATC+TGG - chr6.3:44005037-44005056 None:intergenic 40.0%
AGTAAAATTCCCTTGGGTGA+CGG - chr6.3:44004200-44004219 None:intergenic 40.0%
AGTTACTCAGAAACCTATGG+GGG + chr6.3:44004659-44004678 MS.gene039370:CDS 40.0%
ATAGGAAATTCCGCTCAGAA+TGG + chr6.3:44004354-44004373 MS.gene039370:CDS 40.0%
ATCGAGGAAATCACGAACAA+AGG - chr6.3:44004459-44004478 None:intergenic 40.0%
ATGGATCTGGATGTTGAGTT+TGG + chr6.3:44004579-44004598 MS.gene039370:CDS 40.0%
CAACAAAGTCACCACAAGTT+TGG + chr6.3:44005650-44005669 MS.gene039370:intron 40.0%
CAATCCTCAGGTATGGAATT+TGG + chr6.3:44004419-44004438 MS.gene039370:intron 40.0%
CAGATGAGGCAATGTAAGAT+TGG + chr6.3:44004243-44004262 MS.gene039370:CDS 40.0%
CATGTGTTGCAATACATACG+AGG - chr6.3:44005377-44005396 None:intergenic 40.0%
CATTGTCAAAAAGTGACGAC+AGG - chr6.3:44006106-44006125 None:intergenic 40.0%
GAGAGGAATATGGTGAAAGT+AGG + chr6.3:44005437-44005456 MS.gene039370:intron 40.0%
GAGTTACTCAGAAACCTATG+GGG + chr6.3:44004658-44004677 MS.gene039370:CDS 40.0%
GCAATTCAAATGGGTCATAC+TGG - chr6.3:44004155-44004174 None:intergenic 40.0%
GCTGTTCGAGACATTATTGT+TGG + chr6.3:44004285-44004304 MS.gene039370:CDS 40.0%
GGAGTAAGACGCAATTCAAA+TGG - chr6.3:44004165-44004184 None:intergenic 40.0%
GGAGTTACTCAGAAACCTAT+GGG + chr6.3:44004657-44004676 MS.gene039370:CDS 40.0%
GTGAAGCAGTAAAATTCCCT+TGG - chr6.3:44004207-44004226 None:intergenic 40.0%
TCGAGGAAATCACGAACAAA+GGG - chr6.3:44004458-44004477 None:intergenic 40.0%
TGGCAAGGTAGTAGATAACA+AGG - chr6.3:44004068-44004087 None:intergenic 40.0%
TTGCTAACAATCCTCAGGTA+TGG + chr6.3:44004412-44004431 MS.gene039370:intron 40.0%
TTTCCCAAATTCCATACCTG+AGG - chr6.3:44004426-44004445 None:intergenic 40.0%
! GATTGGATTTTGGATGCAGA+AGG + chr6.3:44004260-44004279 MS.gene039370:CDS 40.0%
! TGTTGGAACTGATAACGTGT+TGG + chr6.3:44004302-44004321 MS.gene039370:CDS 40.0%
! TTGGATTTTGGATGCAGAAG+GGG + chr6.3:44004262-44004281 MS.gene039370:CDS 40.0%
! TTTGGAGCAGATGTTGATGA+AGG + chr6.3:44004597-44004616 MS.gene039370:CDS 40.0%
!! AGTTTTGATGCCATTCTGAG+CGG - chr6.3:44004367-44004386 None:intergenic 40.0%
!! CGAATAAGCTTTGGTGTCAA+CGG - chr6.3:44005127-44005146 None:intergenic 40.0%
!! TGAAAGCATTAGTTGCTCTG+GGG - chr6.3:44006265-44006284 None:intergenic 40.0%
!!! GCTCGTTTTTGGTGTTTATC+AGG + chr6.3:44006188-44006207 MS.gene039370:intron 40.0%
AAGTCACCACAAGTTTGGGA+AGG + chr6.3:44005655-44005674 MS.gene039370:intron 45.0%
AGTCACCACAAGTTTGGGAA+GGG + chr6.3:44005656-44005675 MS.gene039370:intron 45.0%
CAAATGGGTCATACTGGTAC+AGG - chr6.3:44004149-44004168 None:intergenic 45.0%
CACTCTTGCTAACAATCCTC+AGG + chr6.3:44004407-44004426 MS.gene039370:CDS 45.0%
CCTCATCTGCTCATCAACTT+TGG - chr6.3:44004232-44004251 None:intergenic 45.0%
CGAGGAAATCACGAACAAAG+GGG - chr6.3:44004457-44004476 None:intergenic 45.0%
CGGAGTTACTCAGAAACCTA+TGG + chr6.3:44004656-44004675 MS.gene039370:CDS 45.0%
GAAGGTGATGCTACTAGAGA+TGG + chr6.3:44004615-44004634 MS.gene039370:CDS 45.0%
GAATTTCTTCCACCTGGTGT+TGG + chr6.3:44004021-44004040 MS.gene039370:CDS 45.0%
GGCTCTGCTAACAAGATGAA+CGG + chr6.3:44004636-44004655 MS.gene039370:CDS 45.0%
GTTTGGGAAGGGTTGTGAAT+TGG + chr6.3:44005667-44005686 MS.gene039370:intron 45.0%
TCAACATCCAGATCCATCTC+TGG - chr6.3:44004576-44004595 None:intergenic 45.0%
TGACGATGTTGTCTTGCACA+TGG + chr6.3:44006230-44006249 MS.gene039370:CDS 45.0%
! CTTTTTCTTCCGTCACCCAA+GGG + chr6.3:44004188-44004207 MS.gene039370:CDS 45.0%
! GGAACTGATAACGTGTTGGT+GGG + chr6.3:44004306-44004325 MS.gene039370:CDS 45.0%
! TGGAACTGATAACGTGTTGG+TGG + chr6.3:44004305-44004324 MS.gene039370:CDS 45.0%
! TGGATTTTGGATGCAGAAGG+GGG + chr6.3:44004263-44004282 MS.gene039370:CDS 45.0%
!! CCAAAGTTGATGAGCAGATG+AGG + chr6.3:44004229-44004248 MS.gene039370:CDS 45.0%
!! AAATTTAAAGAAAAATAAAA+AGG - chr6.3:44005057-44005076 None:intergenic 5.0%
ACATCCAGATCCATCTCTGG+TGG - chr6.3:44004573-44004592 None:intergenic 50.0%
AGTCAAGATCCGTTGACACC+AGG - chr6.3:44005970-44005989 None:intergenic 50.0%
CACAACCCTTCCCAAACTTG+TGG - chr6.3:44005664-44005683 None:intergenic 50.0%
CATCCAGATCCATCTCTGGT+GGG - chr6.3:44004572-44004591 None:intergenic 50.0%
GGAAATCACGAACAAAGGGG+AGG - chr6.3:44004454-44004473 None:intergenic 50.0%
TCAACGAATCCGTTGACACC+TGG + chr6.3:44005949-44005968 MS.gene039370:intron 50.0%
TCAGAAACCTATGGGGGCTA+GGG + chr6.3:44004665-44004684 MS.gene039370:CDS 50.0%
! CCTTTTTCTTCCGTCACCCA+AGG + chr6.3:44004187-44004206 MS.gene039370:CDS 50.0%
!! CCTTGGGTGACGGAAGAAAA+AGG - chr6.3:44004190-44004209 None:intergenic 50.0%
!! GGGTGACGGAAGAAAAAGGA+CGG - chr6.3:44004186-44004205 None:intergenic 50.0%
!!! AGATTTTGAAGGCACCCTGC+AGG + chr6.3:44004740-44004759 MS.gene039370:CDS 50.0%
AAACCTATGGGGGCTAGGGA+TGG + chr6.3:44004669-44004688 MS.gene039370:CDS 55.0%
AACCTATGGGGGCTAGGGAT+GGG + chr6.3:44004670-44004689 MS.gene039370:CDS 55.0%
CCGTTGACACCAGGTGTCAA+CGG - chr6.3:44005961-44005980 None:intergenic 55.0%
CTCAGAAACCTATGGGGGCT+AGG + chr6.3:44004664-44004683 MS.gene039370:CDS 55.0%
GAAGGGATGAAGCCAACACC+AGG - chr6.3:44004036-44004055 None:intergenic 55.0%
GTTTGACTGCCCACCAGAGA+TGG + chr6.3:44004560-44004579 MS.gene039370:CDS 55.0%
! AGTGCTGCTGTTGAGCAACG+CGG + chr6.3:44004702-44004721 MS.gene039370:CDS 55.0%
! CCGTTGACACCTGGTGTCAA+CGG + chr6.3:44005958-44005977 MS.gene039370:intron 55.0%
ACCTATGGGGGCTAGGGATG+GGG + chr6.3:44004671-44004690 MS.gene039370:CDS 60.0%
CTGCCCACCAGAGATGGATC+TGG + chr6.3:44004566-44004585 MS.gene039370:CDS 60.0%
GGGATGAAGCCAACACCAGG+TGG - chr6.3:44004033-44004052 None:intergenic 60.0%
ATGGGGGCTAGGGATGGGGC+TGG + chr6.3:44004675-44004694 MS.gene039370:CDS 70.0%
GCCCCATCCCTAGCCCCCAT+AGG - chr6.3:44004675-44004694 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 44004018 44006326 44004018 ID=MS.gene039370
chr6.3 mRNA 44004018 44006326 44004018 ID=MS.gene039370.t1;Parent=MS.gene039370
chr6.3 exon 44004018 44004428 44004018 ID=MS.gene039370.t1.exon1;Parent=MS.gene039370.t1
chr6.3 CDS 44004018 44004428 44004018 ID=cds.MS.gene039370.t1;Parent=MS.gene039370.t1
chr6.3 exon 44004537 44004761 44004537 ID=MS.gene039370.t1.exon2;Parent=MS.gene039370.t1
chr6.3 CDS 44004537 44004761 44004537 ID=cds.MS.gene039370.t1;Parent=MS.gene039370.t1
chr6.3 exon 44006210 44006326 44006210 ID=MS.gene039370.t1.exon3;Parent=MS.gene039370.t1
chr6.3 CDS 44006210 44006326 44006210 ID=cds.MS.gene039370.t1;Parent=MS.gene039370.t1
Gene Sequence

>MS.gene039370

ATGGAATTTCTTCCACCTGGTGTTGGCTTCATCCCTTCTGATGAACTCCTTGTTATCTACTACCTTGCCAACAAAAATAATGAAGAGGTTCAAAATTTCAATGGTTCTGACTTGATTAAGGAGCTAAACCTGTACCAGTATGACCCATTTGAATTGCGTCTTACTCCGTCCTTTTTCTTCCGTCACCCAAGGGAATTTTACTGCTTCACTGCCAAAGTTGATGAGCAGATGAGGCAATGTAAGATTGGATTTTGGATGCAGAAGGGGGCTGTTCGAGACATTATTGTTGGAACTGATAACGTGTTGGTGGGAAAGAAGTCTCTTTTTATGTTCTATATAGGAAATTCCGCTCAGAATGGCATCAAAACTAGTTGGACTATGTACGAGTACACTCTTGCTAACAATCCTCAGGTATGGAATTTGGGAAAACTAACCTCCCCTTTGTTCGTGATTTCCTCGATGATTATTTAATGTATTAGCAACTACTAATTGTTTTTTATTTTTAAAATTATTATGCAGGCTCCTTTTGTTCTTTGTCGTGTGTTTGACTGCCCACCAGAGATGGATCTGGATGTTGAGTTTGGAGCAGATGTTGATGAAGGTGATGCTACTAGAGATGGCTCTGCTAACAAGATGAACGGAGTTACTCAGAAACCTATGGGGGCTAGGGATGGGGCTGGTACTAGTGCTGCTGTTGAGCAACGCGGTGCATCAAATTTCACAGATTTTGAAGGCACCCTGCAGGTAAAATATATTCCATTTTGATCTCTCTTTATATTAACCAATTAATGTTGTTGATCTTATTTGCAACTGATTCTTTAAAATTTCGAAAATTTTACAACTTAATCCATTCATGTGATGTATTTTTTTATCGCACCAATCTTTGCTACTAAATGTAACATGTCAATTGTATGTATCACTCTGCACATGTATTTTTTGTTTTGTTTGTGTGTATAAATTAAGTGATAATTCTCAAAACATATAGGAATTTTGATTAGTTAATGAAGCTATTCTTACCAGATTCTTCAAATCACGTCCTTTTTATTTTTCTTTAAATTTTTTGCTATGATAAATTCATTATTATTATTATTATTATGAGTCAGGATCCGTTGACACCAAAGCTTATTCGTCAGTTCTTTTAATCTAAAGGCCCATAATTAATCCATGTTTCTTTTTCTTGTGTATCATTTCTCTCACCCACACACAATTATTGCTTTTAGTGATAAAAAAAACTCAAACTGAAAACATGGAGTTATGATACTCAACGATTCTCTTTTGGGAAAATTGTTTTTCTCTTCCCCCACTCCTATGAATATTATTCTTCTTCTTTGTATCTCCTTTCCCTCTTATTTAACTCCTCGTATGTATTGCAACACATGAAGGAAATTTATGTCAAGCTTATGATAACAATTACAATTGGAGAGGAATATGGTGAAAGTAGGAGATTGTTGATGAGTTTAATTTGCTTTTAATTTTATGTGTTTTACCATGATTGAATATGAATTAAAATAATCCTAGGATTTTATCGTTTTAAACGATTAGATGTCTACAAAATGAATCGTATGGTTTTGGTAGAATGGAAAACCTCATTACAATTTTATTTTATTATTTACAACATAAACAATGAAATCTCAACAAAGTCACCACAAGTTTGGGAAGGGTTGTGAATTGGTTCAATTAGCATGTAGGAGAAGAGATCATTCTAAACAGTACTATCTTAAAAGTATTTTAATTATTCAGATATGGAGTATTTCAATTTTGTAGACAAGAGAACAAAGAGAATTATGATAGGATTATGTTTCCAATTTGGGTTTGGTAATCATTAAAAACAATAATAGTGTGTGTGATTGAAAAAAAGGATACGTAATAAATAAAAATGTGACACTATTATTAACCTTTGATTAAATAAAATCAACGGTTGAGATTTGGTGTCAACGAATCCGTTGACACCTGGTGTCAACGGATCTTGACTCTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTGTTGTTCCTGTCGTCACTTTTTGACAATGCAACTTTTCATTTCATGTTATGGTAAAGACTAGAAGGTATTGTTGAAATATTGAATTGCTTTGCTCGTTTTTGGTGTTTATCAGGCGAGTTATGCTGCATTTCTTGACGATGTTGTCTTGCACATGGAAGCTATGACCCCAGAGCAACTAATGCTTTCAATTATGGATGACGATTTTCTTGAAATAGCCGATCTTGTGTAA
Protein sequence

>MS.gene039370.t1

MEFLPPGVGFIPSDELLVIYYLANKNNEEVQNFNGSDLIKELNLYQYDPFELRLTPSFFFRHPREFYCFTAKVDEQMRQCKIGFWMQKGAVRDIIVGTDNVLVGKKSLFMFYIGNSAQNGIKTSWTMYEYTLANNPQAPFVLCRVFDCPPEMDLDVEFGADVDEGDATRDGSANKMNGVTQKPMGARDGAGTSAAVEQRGASNFTDFEGTLQASYAAFLDDVVLHMEAMTPEQLMLSIMDDDFLEIADLV