Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03941.t1 | KEH34360.1 | 83.1 | 549 | 92 | 1 | 1 | 548 | 1 | 549 | 3.60E-181 | 644.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03941.t1 | Q9LVU8 | 35.4 | 79 | 49 | 1 | 418 | 496 | 128 | 204 | 8.6e-06 | 53.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03941.t1 | A0A072V894 | 83.1 | 549 | 92 | 1 | 1 | 548 | 1 | 549 | 2.6e-181 | 644.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene03941.t1 | TF | RWP-RK |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03941.t1 | MTR_3g465110 | 88.398 | 543 | 60 | 3 | 1 | 541 | 1 | 542 | 0.0 | 932 |
| MS.gene03941.t1 | MTR_3g104830 | 50.361 | 554 | 197 | 13 | 7 | 540 | 2 | 497 | 2.85e-164 | 476 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene03941.t1 | AT5G16100 | 26.756 | 299 | 169 | 10 | 266 | 525 | 153 | 440 | 3.45e-23 | 102 |
Find 108 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCCAAGTCCATGGTAATTT+TGG | 0.212819 | 3.2:-55513166 | None:intergenic |
| GGGTCCATTATTGCTATTAA+TGG | 0.250205 | 3.2:-55513141 | None:intergenic |
| ATTGCTATTAATGGACAAAT+TGG | 0.250376 | 3.2:-55513132 | None:intergenic |
| CAAAATAATAATGTTTCATT+TGG | 0.253731 | 3.2:+55513704 | MS.gene03941:CDS |
| CATGGACATGGTAGTAATAT+TGG | 0.259830 | 3.2:+55513350 | MS.gene03941:CDS |
| TTGTCCATTAATAGCAATAA+TGG | 0.260366 | 3.2:+55513137 | MS.gene03941:CDS |
| TGGATTGCGGTTGCTCAAAT+TGG | 0.290960 | 3.2:-55513108 | None:intergenic |
| AGACGAATCATTTACTCTAA+TGG | 0.306498 | 3.2:+55513854 | MS.gene03941:CDS |
| ATTGTTGGGCCTCCATTAAC+AGG | 0.321028 | 3.2:-55514037 | None:intergenic |
| TATGAAAATCTTGAGATTCA+TGG | 0.321881 | 3.2:+55513974 | MS.gene03941:CDS |
| CAAGAGCAAGTTGGTGAGAT+TGG | 0.322818 | 3.2:+55514878 | MS.gene03941:CDS |
| AACGTTGCACCTTCGATACT+TGG | 0.325070 | 3.2:-55512960 | None:intergenic |
| CGCCATGTGACACCTGTTAA+TGG | 0.325291 | 3.2:+55514025 | MS.gene03941:CDS |
| TTGGATTGATGATATTAATA+TGG | 0.329852 | 3.2:+55514303 | MS.gene03941:CDS |
| CACACTGCTGCTGCTGATAA+TGG | 0.337202 | 3.2:-55515517 | None:intergenic |
| CTCTTTGCACCGGATATGAT+TGG | 0.357597 | 3.2:+55514284 | MS.gene03941:CDS |
| CTTGAGATTCATGGAAGCTT+GGG | 0.357672 | 3.2:+55513983 | MS.gene03941:CDS |
| CATGCTTACAGATGATATAA+TGG | 0.390482 | 3.2:+55514847 | MS.gene03941:intron |
| GATATTAAATTGTAATTGAA+TGG | 0.400636 | 3.2:-55513524 | None:intergenic |
| TGATGAAATAAAGAACTTCC+TGG | 0.412875 | 3.2:+55514189 | MS.gene03941:CDS |
| CTATTAATGGACAAATTGGT+TGG | 0.419381 | 3.2:-55513128 | None:intergenic |
| AGCAATACTTGAAAATCAAT+TGG | 0.419584 | 3.2:+55515364 | MS.gene03941:CDS |
| TGGAATAAGTAACTTTGAAG+TGG | 0.427695 | 3.2:+55513724 | MS.gene03941:CDS |
| CGATTACTTTCATCTACCTA+TGG | 0.438638 | 3.2:+55515140 | MS.gene03941:CDS |
| TGTATATATCATTTAGTGTA+GGG | 0.456932 | 3.2:-55513034 | None:intergenic |
| CTTCCTGGATCAGTATTGTA+TGG | 0.458075 | 3.2:+55514204 | MS.gene03941:CDS |
| CAATCGTTCGATCAATTGTT+GGG | 0.465946 | 3.2:-55514051 | None:intergenic |
| TCTTGAGATTCATGGAAGCT+TGG | 0.468339 | 3.2:+55513982 | MS.gene03941:CDS |
| CACCAAAATTACCATGGACT+TGG | 0.468970 | 3.2:+55513164 | MS.gene03941:CDS |
| AGATGTGCACAATTTACATT+GGG | 0.476510 | 3.2:+55515108 | MS.gene03941:CDS |
| TCAATCGTTCGATCAATTGT+TGG | 0.476535 | 3.2:-55514052 | None:intergenic |
| ATTCAGTTGTGGCATTGCAT+TGG | 0.484885 | 3.2:-55513390 | None:intergenic |
| CAACAAAATTACCATGGACT+TGG | 0.485409 | 3.2:+55513248 | MS.gene03941:CDS |
| GGAAGTTCTTTATTTCATCA+AGG | 0.486733 | 3.2:-55514186 | None:intergenic |
| CCATGGCATTCAACATGGAC+GGG | 0.487707 | 3.2:+55513487 | MS.gene03941:CDS |
| GGAATAAGTAACTTTGAAGT+GGG | 0.489373 | 3.2:+55513725 | MS.gene03941:CDS |
| TCAATTGGACAGGCAAGATC+CGG | 0.489751 | 3.2:+55515379 | MS.gene03941:CDS |
| ATCATCAATCCAATCATATC+CGG | 0.493113 | 3.2:-55514293 | None:intergenic |
| TGTATGGAACATAATTCAGC+AGG | 0.494565 | 3.2:+55514220 | MS.gene03941:CDS |
| CGATTACAATTTAGTATCGC+AGG | 0.496109 | 3.2:+55513457 | MS.gene03941:CDS |
| TTGATCAAGTGCCAACGCTT+CGG | 0.497530 | 3.2:-55513783 | None:intergenic |
| CCAATGGTTCAAAATCAACT+TGG | 0.499953 | 3.2:+55513677 | MS.gene03941:CDS |
| CCATGTCCATGTTGAATACC+AGG | 0.503325 | 3.2:-55513629 | None:intergenic |
| GTAGAACAAAATTAAGAAGA+TGG | 0.504860 | 3.2:+55515217 | MS.gene03941:CDS |
| CTAGCCGCTGCTTCTTCCAT+AGG | 0.508372 | 3.2:-55515156 | None:intergenic |
| CAACAAAGTAGTAATTTCAA+TGG | 0.513743 | 3.2:+55513203 | MS.gene03941:CDS |
| AGAGTCCTTTCCCTTGTCGC+CGG | 0.514274 | 3.2:-55515398 | None:intergenic |
| ATGTATATATCATTTAGTGT+AGG | 0.514577 | 3.2:-55513035 | None:intergenic |
| AAGATGTGCACAATTTACAT+TGG | 0.515263 | 3.2:+55515107 | MS.gene03941:CDS |
| AAGCGTTGGCACTTGATCAA+TGG | 0.517228 | 3.2:+55513786 | MS.gene03941:CDS |
| AAGAAGATGGCCACACAGAA+AGG | 0.518680 | 3.2:+55515230 | MS.gene03941:CDS |
| GATTGATGATATTAATATGG+AGG | 0.518874 | 3.2:+55514306 | MS.gene03941:CDS |
| TACTTGAAAATCAATTGGAC+AGG | 0.519249 | 3.2:+55515369 | MS.gene03941:CDS |
| TCCATGGCATTCAACATGGA+CGG | 0.530565 | 3.2:+55513486 | MS.gene03941:CDS |
| GTTCCATACAATACTGATCC+AGG | 0.531567 | 3.2:-55514207 | None:intergenic |
| GCGACATAATTCAACGCTGT+TGG | 0.539048 | 3.2:-55515476 | None:intergenic |
| ATGTCACAACAAAATGATCC+TGG | 0.543235 | 3.2:+55513611 | MS.gene03941:CDS |
| CCCGTCCATGTTGAATGCCA+TGG | 0.549514 | 3.2:-55513487 | None:intergenic |
| TCATGGTATTCAACAAGGGC+AGG | 0.551808 | 3.2:+55513559 | MS.gene03941:CDS |
| AAGATCCGGCGACAAGGGAA+AGG | 0.552910 | 3.2:+55515393 | MS.gene03941:CDS |
| ATATCACCAGAAAATGATCA+TGG | 0.553458 | 3.2:+55513542 | MS.gene03941:CDS |
| CTCCATTAACAGGTGTCACA+TGG | 0.555997 | 3.2:-55514027 | None:intergenic |
| GACTTGGAATACTTCAACGA+GGG | 0.562322 | 3.2:+55513180 | MS.gene03941:CDS |
| AATGTCCATGGCATTCAACA+TGG | 0.568154 | 3.2:+55513482 | MS.gene03941:CDS |
| CAGGCAAGATCCGGCGACAA+GGG | 0.569973 | 3.2:+55515388 | MS.gene03941:CDS |
| TACATGAATAACAATAACAA+TGG | 0.572167 | 3.2:+55513053 | MS.gene03941:CDS |
| CACCAGAGTGTGGTTCAACA+TGG | 0.578034 | 3.2:+55513332 | MS.gene03941:CDS |
| ATTGATGATATTAATATGGA+GGG | 0.585774 | 3.2:+55514307 | MS.gene03941:CDS |
| TGCTGCTGATAATGGTGCGG+CGG | 0.588126 | 3.2:-55515509 | None:intergenic |
| GGTATTCAACAAGGGCAGGA+TGG | 0.589069 | 3.2:+55513563 | MS.gene03941:CDS |
| TCCGTCCGTGTTGAACGCCA+TGG | 0.589945 | 3.2:-55513415 | None:intergenic |
| GAGCAAGAGCAAGAGCAAGT+TGG | 0.590145 | 3.2:+55514869 | MS.gene03941:CDS |
| TTGAGATTCATGGAAGCTTG+GGG | 0.597747 | 3.2:+55513984 | MS.gene03941:CDS |
| AATGATCATGGTATTCAACA+AGG | 0.598505 | 3.2:+55513554 | MS.gene03941:CDS |
| GTAGAAGTATTCCAAGTCCA+TGG | 0.598550 | 3.2:-55513259 | None:intergenic |
| CCTGGTATTCAACATGGACA+TGG | 0.598984 | 3.2:+55513629 | MS.gene03941:CDS |
| GTTGAAGTATTCCAAGTCCA+TGG | 0.599108 | 3.2:-55513175 | None:intergenic |
| ACAGGCAAGATCCGGCGACA+AGG | 0.599603 | 3.2:+55515387 | MS.gene03941:CDS |
| ACGCCATGGTCATTCAGTTG+TGG | 0.599712 | 3.2:-55513401 | None:intergenic |
| GATACTAAATTGTAATCGAA+TGG | 0.600612 | 3.2:-55513452 | None:intergenic |
| TCAACATCAGACCGAAGCGT+TGG | 0.600663 | 3.2:+55513772 | MS.gene03941:CDS |
| TATTATGAGACTCTTTGCAC+CGG | 0.606478 | 3.2:+55514274 | MS.gene03941:CDS |
| GGCATTCAACATGGACGGGG+TGG | 0.611696 | 3.2:+55513491 | MS.gene03941:CDS |
| CATGGCATTCAACATGGACG+GGG | 0.618361 | 3.2:+55513488 | MS.gene03941:CDS |
| CTATCCCAACAAAATTACCA+TGG | 0.618972 | 3.2:+55513242 | MS.gene03941:CDS |
| ACCATGGCGTTCAACACGGA+CGG | 0.619182 | 3.2:+55513414 | MS.gene03941:CDS |
| GGACTTGGAATACTTCTACA+AGG | 0.619567 | 3.2:+55513263 | MS.gene03941:CDS |
| AATGATCCTGGTATTCAACA+TGG | 0.622879 | 3.2:+55513623 | MS.gene03941:CDS |
| TGCTGCTGCTGATAATGGTG+CGG | 0.624873 | 3.2:-55515512 | None:intergenic |
| CAACAACAAAATTCTTGCAG+TGG | 0.625689 | 3.2:+55513818 | MS.gene03941:CDS |
| AATGACCATGGCGTTCAACA+CGG | 0.633314 | 3.2:+55513410 | MS.gene03941:CDS |
| CAAGACATGATTGATGATTG+TGG | 0.634370 | 3.2:+55515443 | MS.gene03941:CDS |
| GTATCGCAGGAAAATGTCCA+TGG | 0.637140 | 3.2:+55513470 | MS.gene03941:CDS |
| CATGTGACACCTGTTAATGG+AGG | 0.638273 | 3.2:+55514028 | MS.gene03941:CDS |
| TGGACAAATTGGTTGGATTG+CGG | 0.639366 | 3.2:-55513121 | None:intergenic |
| TCTACCTATGGAAGAAGCAG+CGG | 0.639381 | 3.2:+55515152 | MS.gene03941:CDS |
| GTCCATGTTGAACCACACTC+TGG | 0.639765 | 3.2:-55513334 | None:intergenic |
| GGACCCCACCAAAATTACCA+TGG | 0.646800 | 3.2:+55513158 | MS.gene03941:CDS |
| GGAATACTTCTACAAGGACA+TGG | 0.662894 | 3.2:+55513269 | MS.gene03941:CDS |
| ATGATCATGGTATTCAACAA+GGG | 0.672665 | 3.2:+55513555 | MS.gene03941:CDS |
| GTATGGAACATAATTCAGCA+GGG | 0.676056 | 3.2:+55514221 | MS.gene03941:CDS |
| ATAAAATTACCTGCTCTGAG+AGG | 0.686791 | 3.2:-55514919 | None:intergenic |
| GACAAGGGAAAGGACTCTAG+AGG | 0.686791 | 3.2:+55515403 | MS.gene03941:CDS |
| CCAACAAAATCACCAGAGTG+TGG | 0.687205 | 3.2:+55513322 | MS.gene03941:CDS |
| AGTGTGGTTCAACATGGACA+TGG | 0.687520 | 3.2:+55513338 | MS.gene03941:CDS |
| ATGCCACAACTGAATGACCA+TGG | 0.716852 | 3.2:+55513398 | MS.gene03941:CDS |
| GACATGATTGATGATTGTGG+CGG | 0.760229 | 3.2:+55515446 | MS.gene03941:CDS |
| GGACTTGGAATACTTCAACG+AGG | 0.774898 | 3.2:+55513179 | MS.gene03941:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATATATCAAAATAAC+TGG | - | chr3.2:55513927-55513946 | None:intergenic | 15.0% |
| !! | CAAAATAATAATGTTTCATT+TGG | + | chr3.2:55513704-55513723 | MS.gene03941:CDS | 15.0% |
| !! | GATATTAAATTGTAATTGAA+TGG | - | chr3.2:55513527-55513546 | None:intergenic | 15.0% |
| !! | TACTCATATTGAAAAAATTT+GGG | - | chr3.2:55513013-55513032 | None:intergenic | 15.0% |
| !! | TTACTCATATTGAAAAAATT+TGG | - | chr3.2:55513014-55513033 | None:intergenic | 15.0% |
| !!! | GTTTATTTTGATTCTTATAT+AGG | + | chr3.2:55513944-55513963 | MS.gene03941:intron | 15.0% |
| !!! | TATCATAATGATTTTGATTT+GGG | + | chr3.2:55514717-55514736 | MS.gene03941:intron | 15.0% |
| !!! | TTTTTTGTGTGTATTATTTT+TGG | + | chr3.2:55515262-55515281 | MS.gene03941:intron | 15.0% |
| !! | ATATTGTATGTATTGAATAG+AGG | + | chr3.2:55515082-55515101 | MS.gene03941:intron | 20.0% |
| !! | ATGTATATATCATTTAGTGT+AGG | - | chr3.2:55513038-55513057 | None:intergenic | 20.0% |
| !! | TACATGAATAACAATAACAA+TGG | + | chr3.2:55513053-55513072 | MS.gene03941:CDS | 20.0% |
| !! | TGTATATATCATTTAGTGTA+GGG | - | chr3.2:55513037-55513056 | None:intergenic | 20.0% |
| !!! | ATCATAATGATTTTGATTTG+GGG | + | chr3.2:55514718-55514737 | MS.gene03941:intron | 20.0% |
| !!! | ATTGATGATATTAATATGGA+GGG | + | chr3.2:55514307-55514326 | MS.gene03941:CDS | 20.0% |
| !!! | CTTTTAGAAATACATTTGTT+TGG | + | chr3.2:55514573-55514592 | MS.gene03941:intron | 20.0% |
| !!! | GTATCATAATGATTTTGATT+TGG | + | chr3.2:55514716-55514735 | MS.gene03941:intron | 20.0% |
| !!! | TTGGATTGATGATATTAATA+TGG | + | chr3.2:55514303-55514322 | MS.gene03941:CDS | 20.0% |
| !!! | TTTCTTGTAGTGATTAATTT+TGG | - | chr3.2:55513903-55513922 | None:intergenic | 20.0% |
| ! | AAACCTGAAAAATTATCGAT+AGG | - | chr3.2:55514334-55514353 | None:intergenic | 25.0% |
| ! | ACAAATATTACACTAAGACT+TGG | - | chr3.2:55514085-55514104 | None:intergenic | 25.0% |
| ! | AGCAATACTTGAAAATCAAT+TGG | + | chr3.2:55515364-55515383 | MS.gene03941:CDS | 25.0% |
| ! | ATTGAAAAAATTTGGGTCAA+TGG | - | chr3.2:55513006-55513025 | None:intergenic | 25.0% |
| ! | CAACAAAGTAGTAATTTCAA+TGG | + | chr3.2:55513203-55513222 | MS.gene03941:CDS | 25.0% |
| ! | CACGTATTAAATTAGCAAAA+TGG | - | chr3.2:55515303-55515322 | None:intergenic | 25.0% |
| ! | GATACTAAATTGTAATCGAA+TGG | - | chr3.2:55513455-55513474 | None:intergenic | 25.0% |
| ! | GTAGAACAAAATTAAGAAGA+TGG | + | chr3.2:55515217-55515236 | MS.gene03941:CDS | 25.0% |
| ! | TATGAAAATCTTGAGATTCA+TGG | + | chr3.2:55513974-55513993 | MS.gene03941:CDS | 25.0% |
| ! | TTATTAATGTTATTACGTCG+AGG | + | chr3.2:55514807-55514826 | MS.gene03941:intron | 25.0% |
| ! | TTGTCCATTAATAGCAATAA+TGG | + | chr3.2:55513137-55513156 | MS.gene03941:CDS | 25.0% |
| !! | AATTGGAATGATGATTTTGT+TGG | - | chr3.2:55513094-55513113 | None:intergenic | 25.0% |
| !! | ATTGCTATTAATGGACAAAT+TGG | - | chr3.2:55513135-55513154 | None:intergenic | 25.0% |
| !! | ATTGGAATGATGATTTTGTT+GGG | - | chr3.2:55513093-55513112 | None:intergenic | 25.0% |
| !! | GATTGATGATATTAATATGG+AGG | + | chr3.2:55514306-55514325 | MS.gene03941:CDS | 25.0% |
| !!! | CTTTTAGAAATACACTTGTT+TGG | + | chr3.2:55514389-55514408 | MS.gene03941:intron | 25.0% |
| !!! | CTTTTAGAAATGCATTTGTT+TGG | + | chr3.2:55514481-55514500 | MS.gene03941:intron | 25.0% |
| AAGATGTGCACAATTTACAT+TGG | + | chr3.2:55515107-55515126 | MS.gene03941:CDS | 30.0% | |
| AATGATCATGGTATTCAACA+AGG | + | chr3.2:55513554-55513573 | MS.gene03941:CDS | 30.0% | |
| AGACGAATCATTTACTCTAA+TGG | + | chr3.2:55513854-55513873 | MS.gene03941:CDS | 30.0% | |
| AGATGTGCACAATTTACATT+GGG | + | chr3.2:55515108-55515127 | MS.gene03941:CDS | 30.0% | |
| ATATCACCAGAAAATGATCA+TGG | + | chr3.2:55513542-55513561 | MS.gene03941:CDS | 30.0% | |
| ATCATCAATCCAATCATATC+CGG | - | chr3.2:55514296-55514315 | None:intergenic | 30.0% | |
| ATGATCATGGTATTCAACAA+GGG | + | chr3.2:55513555-55513574 | MS.gene03941:CDS | 30.0% | |
| CATGCTTACAGATGATATAA+TGG | + | chr3.2:55514847-55514866 | MS.gene03941:intron | 30.0% | |
| CATTTATGTGTGTGACTAAA+TGG | - | chr3.2:55514526-55514545 | None:intergenic | 30.0% | |
| CGTGTCTTAAAATTGAGTAT+AGG | + | chr3.2:55515319-55515338 | MS.gene03941:intron | 30.0% | |
| TACTTGAAAATCAATTGGAC+AGG | + | chr3.2:55515369-55515388 | MS.gene03941:CDS | 30.0% | |
| TGATGAAATAAAGAACTTCC+TGG | + | chr3.2:55514189-55514208 | MS.gene03941:CDS | 30.0% | |
| TTGAACAATATATACTCGCA+AGG | + | chr3.2:55514956-55514975 | MS.gene03941:intron | 30.0% | |
| ! | AAGTCCATGGTAATTTTGTT+GGG | - | chr3.2:55513249-55513268 | None:intergenic | 30.0% |
| ! | AATACTTTTACCTTTCTGTG+TGG | - | chr3.2:55515243-55515262 | None:intergenic | 30.0% |
| ! | ATTTTGTTGGGACAAATTTG+TGG | - | chr3.2:55513081-55513100 | None:intergenic | 30.0% |
| ! | CTATTAATGGACAAATTGGT+TGG | - | chr3.2:55513131-55513150 | None:intergenic | 30.0% |
| ! | GGAAGTTCTTTATTTCATCA+AGG | - | chr3.2:55514189-55514208 | None:intergenic | 30.0% |
| ! | TATAGGTGAAATGTCTTTTG+AGG | + | chr3.2:55515336-55515355 | MS.gene03941:intron | 30.0% |
| ! | TGAAACATTTTCTCTTCCAA+TGG | + | chr3.2:55513661-55513680 | MS.gene03941:CDS | 30.0% |
| ! | TGAATACCATGATCATTTTC+TGG | - | chr3.2:55513551-55513570 | None:intergenic | 30.0% |
| ! | TGGAATAAGTAACTTTGAAG+TGG | + | chr3.2:55513724-55513743 | MS.gene03941:CDS | 30.0% |
| ! | TTTTGTTGGGACAAATTTGT+GGG | - | chr3.2:55513080-55513099 | None:intergenic | 30.0% |
| !! | AAAAACAATCCAAGTATCGA+AGG | + | chr3.2:55512951-55512970 | MS.gene03941:CDS | 30.0% |
| !! | ATTTTGTTGTGACATTGCAT+GGG | - | chr3.2:55513606-55513625 | None:intergenic | 30.0% |
| !! | GGAATAAGTAACTTTGAAGT+GGG | + | chr3.2:55513725-55513744 | MS.gene03941:CDS | 30.0% |
| !! | TGTATCAGTTTTTCTGAGAA+AGG | + | chr3.2:55514163-55514182 | MS.gene03941:intron | 30.0% |
| AATGATCCTGGTATTCAACA+TGG | + | chr3.2:55513623-55513642 | MS.gene03941:CDS | 35.0% | |
| AGATTGGAACACCTGAAAAA+AGG | + | chr3.2:55514894-55514913 | MS.gene03941:CDS | 35.0% | |
| ATGTCACAACAAAATGATCC+TGG | + | chr3.2:55513611-55513630 | MS.gene03941:CDS | 35.0% | |
| CAACAAAATTACCATGGACT+TGG | + | chr3.2:55513248-55513267 | MS.gene03941:CDS | 35.0% | |
| CAACAACAAAATTCTTGCAG+TGG | + | chr3.2:55513818-55513837 | MS.gene03941:CDS | 35.0% | |
| CAATCGTTCGATCAATTGTT+GGG | - | chr3.2:55514054-55514073 | None:intergenic | 35.0% | |
| CATGGACATGGTAGTAATAT+TGG | + | chr3.2:55513350-55513369 | MS.gene03941:CDS | 35.0% | |
| CCAATGGTTCAAAATCAACT+TGG | + | chr3.2:55513677-55513696 | MS.gene03941:CDS | 35.0% | |
| CGATTACAATTTAGTATCGC+AGG | + | chr3.2:55513457-55513476 | MS.gene03941:CDS | 35.0% | |
| CGATTACTTTCATCTACCTA+TGG | + | chr3.2:55515140-55515159 | MS.gene03941:CDS | 35.0% | |
| CTATCCCAACAAAATTACCA+TGG | + | chr3.2:55513242-55513261 | MS.gene03941:CDS | 35.0% | |
| GTATGGAACATAATTCAGCA+GGG | + | chr3.2:55514221-55514240 | MS.gene03941:CDS | 35.0% | |
| GTTTGTCTTCGAAATCATGA+AGG | + | chr3.2:55514350-55514369 | MS.gene03941:intron | 35.0% | |
| TATTATGAGACTCTTTGCAC+CGG | + | chr3.2:55514274-55514293 | MS.gene03941:CDS | 35.0% | |
| TCAATCGTTCGATCAATTGT+TGG | - | chr3.2:55514055-55514074 | None:intergenic | 35.0% | |
| TGTATGGAACATAATTCAGC+AGG | + | chr3.2:55514220-55514239 | MS.gene03941:CDS | 35.0% | |
| ! | ATAAAATTACCTGCTCTGAG+AGG | - | chr3.2:55514922-55514941 | None:intergenic | 35.0% |
| ! | CAAGACATGATTGATGATTG+TGG | + | chr3.2:55515443-55515462 | MS.gene03941:CDS | 35.0% |
| ! | CAAGTCCATGGTAATTTTGT+TGG | - | chr3.2:55513250-55513269 | None:intergenic | 35.0% |
| ! | GGGTCCATTATTGCTATTAA+TGG | - | chr3.2:55513144-55513163 | None:intergenic | 35.0% |
| ! | GGTCCTATCGATAATTTTTC+AGG | + | chr3.2:55514328-55514347 | MS.gene03941:CDS | 35.0% |
| ! | TGGTAATTTTGTTGGGATAG+TGG | - | chr3.2:55513242-55513261 | None:intergenic | 35.0% |
| ! | TTCCAAGTCCATGGTAATTT+TGG | - | chr3.2:55513169-55513188 | None:intergenic | 35.0% |
| !! | AAGTCCATGGTAATTTTGGT+GGG | - | chr3.2:55513165-55513184 | None:intergenic | 35.0% |
| !! | CATTTTGTTGTGACATTGCA+TGG | - | chr3.2:55513607-55513626 | None:intergenic | 35.0% |
| !!! | ATTTTGTTGGGATAGTGGAT+TGG | - | chr3.2:55513237-55513256 | None:intergenic | 35.0% |
| !!! | CCAAGTTGATTTTGAACCAT+TGG | - | chr3.2:55513680-55513699 | None:intergenic | 35.0% |
| !!! | GAATTTTGTTGTTGTTCGAG+TGG | - | chr3.2:55513812-55513831 | None:intergenic | 35.0% |
| AATGTCCATGGCATTCAACA+TGG | + | chr3.2:55513482-55513501 | MS.gene03941:CDS | 40.0% | |
| ATTCAGTTGTGGCATTGCAT+TGG | - | chr3.2:55513393-55513412 | None:intergenic | 40.0% | |
| CACCAAAATTACCATGGACT+TGG | + | chr3.2:55513164-55513183 | MS.gene03941:CDS | 40.0% | |
| CTTCCTGGATCAGTATTGTA+TGG | + | chr3.2:55514204-55514223 | MS.gene03941:CDS | 40.0% | |
| CTTGAGATTCATGGAAGCTT+GGG | + | chr3.2:55513983-55514002 | MS.gene03941:CDS | 40.0% | |
| GACTTGGAATACTTCAACGA+GGG | + | chr3.2:55513180-55513199 | MS.gene03941:CDS | 40.0% | |
| GGAATACTTCTACAAGGACA+TGG | + | chr3.2:55513269-55513288 | MS.gene03941:CDS | 40.0% | |
| GGACTTGGAATACTTCTACA+AGG | + | chr3.2:55513263-55513282 | MS.gene03941:CDS | 40.0% | |
| GTTCCATACAATACTGATCC+AGG | - | chr3.2:55514210-55514229 | None:intergenic | 40.0% | |
| TCTTGAGATTCATGGAAGCT+TGG | + | chr3.2:55513982-55514001 | MS.gene03941:CDS | 40.0% | |
| TGGACAAATTGGTTGGATTG+CGG | - | chr3.2:55513124-55513143 | None:intergenic | 40.0% | |
| TTGAGATTCATGGAAGCTTG+GGG | + | chr3.2:55513984-55514003 | MS.gene03941:CDS | 40.0% | |
| ! | CAAGTCCATGGTAATTTTGG+TGG | - | chr3.2:55513166-55513185 | None:intergenic | 40.0% |
| ! | CACACTCTGGTGATTTTGTT+GGG | - | chr3.2:55513324-55513343 | None:intergenic | 40.0% |
| ! | GACATGATTGATGATTGTGG+CGG | + | chr3.2:55515446-55515465 | MS.gene03941:CDS | 40.0% |
| ! | GTTGAAGTATTCCAAGTCCA+TGG | - | chr3.2:55513178-55513197 | None:intergenic | 40.0% |
| !! | AGTCCATGGTAATTTTGGTG+GGG | - | chr3.2:55513164-55513183 | None:intergenic | 40.0% |
| !! | GTAGAAGTATTCCAAGTCCA+TGG | - | chr3.2:55513262-55513281 | None:intergenic | 40.0% |
| !!! | TCTGAGAGGTTCCTTTTTTC+AGG | - | chr3.2:55514908-55514927 | None:intergenic | 40.0% |
| AAAAAGGAACCTCTCAGAGC+AGG | + | chr3.2:55514910-55514929 | MS.gene03941:CDS | 45.0% | |
| AACGTTGCACCTTCGATACT+TGG | - | chr3.2:55512963-55512982 | None:intergenic | 45.0% | |
| AAGAAGATGGCCACACAGAA+AGG | + | chr3.2:55515230-55515249 | MS.gene03941:CDS | 45.0% | |
| AATGACCATGGCGTTCAACA+CGG | + | chr3.2:55513410-55513429 | MS.gene03941:CDS | 45.0% | |
| AGTGTGGTTCAACATGGACA+TGG | + | chr3.2:55513338-55513357 | MS.gene03941:CDS | 45.0% | |
| ATGCCACAACTGAATGACCA+TGG | + | chr3.2:55513398-55513417 | MS.gene03941:CDS | 45.0% | |
| ATTGTTGGGCCTCCATTAAC+AGG | - | chr3.2:55514040-55514059 | None:intergenic | 45.0% | |
| CATGTGACACCTGTTAATGG+AGG | + | chr3.2:55514028-55514047 | MS.gene03941:CDS | 45.0% | |
| CCAACAAAATCACCAGAGTG+TGG | + | chr3.2:55513322-55513341 | MS.gene03941:CDS | 45.0% | |
| CCATGTCCATGTTGAATACC+AGG | - | chr3.2:55513632-55513651 | None:intergenic | 45.0% | |
| CCTGGTATTCAACATGGACA+TGG | + | chr3.2:55513629-55513648 | MS.gene03941:CDS | 45.0% | |
| CTCTTTGCACCGGATATGAT+TGG | + | chr3.2:55514284-55514303 | MS.gene03941:CDS | 45.0% | |
| GCGACATAATTCAACGCTGT+TGG | - | chr3.2:55515479-55515498 | None:intergenic | 45.0% | |
| GGACTTGGAATACTTCAACG+AGG | + | chr3.2:55513179-55513198 | MS.gene03941:CDS | 45.0% | |
| GGGTTGTGACTGAGTATTTC+TGG | + | chr3.2:55514738-55514757 | MS.gene03941:intron | 45.0% | |
| GTATCGCAGGAAAATGTCCA+TGG | + | chr3.2:55513470-55513489 | MS.gene03941:CDS | 45.0% | |
| TCAATTGGACAGGCAAGATC+CGG | + | chr3.2:55515379-55515398 | MS.gene03941:CDS | 45.0% | |
| TCATGGTATTCAACAAGGGC+AGG | + | chr3.2:55513559-55513578 | MS.gene03941:CDS | 45.0% | |
| TCCATGGCATTCAACATGGA+CGG | + | chr3.2:55513486-55513505 | MS.gene03941:CDS | 45.0% | |
| TCTACCTATGGAAGAAGCAG+CGG | + | chr3.2:55515152-55515171 | MS.gene03941:CDS | 45.0% | |
| TGGATTGCGGTTGCTCAAAT+TGG | - | chr3.2:55513111-55513130 | None:intergenic | 45.0% | |
| TTGATCAAGTGCCAACGCTT+CGG | - | chr3.2:55513786-55513805 | None:intergenic | 45.0% | |
| ! | CCACACTCTGGTGATTTTGT+TGG | - | chr3.2:55513325-55513344 | None:intergenic | 45.0% |
| ! | CTCCATTAACAGGTGTCACA+TGG | - | chr3.2:55514030-55514049 | None:intergenic | 45.0% |
| !! | AAGCGTTGGCACTTGATCAA+TGG | + | chr3.2:55513786-55513805 | MS.gene03941:CDS | 45.0% |
| !! | CAAGAGCAAGTTGGTGAGAT+TGG | + | chr3.2:55514878-55514897 | MS.gene03941:CDS | 45.0% |
| AAGCGACAGACTTGTCTGCA+TGG | + | chr3.2:55515019-55515038 | MS.gene03941:intron | 50.0% | |
| ACGCCATGGTCATTCAGTTG+TGG | - | chr3.2:55513404-55513423 | None:intergenic | 50.0% | |
| CACACTGCTGCTGCTGATAA+TGG | - | chr3.2:55515520-55515539 | None:intergenic | 50.0% | |
| CACCAGAGTGTGGTTCAACA+TGG | + | chr3.2:55513332-55513351 | MS.gene03941:CDS | 50.0% | |
| CATGGCATTCAACATGGACG+GGG | + | chr3.2:55513488-55513507 | MS.gene03941:CDS | 50.0% | |
| CCATGGCATTCAACATGGAC+GGG | + | chr3.2:55513487-55513506 | MS.gene03941:CDS | 50.0% | |
| CGCCATGTGACACCTGTTAA+TGG | + | chr3.2:55514025-55514044 | MS.gene03941:CDS | 50.0% | |
| GACAAGGGAAAGGACTCTAG+AGG | + | chr3.2:55515403-55515422 | MS.gene03941:CDS | 50.0% | |
| GAGCAAGAGCAAGAGCAAGT+TGG | + | chr3.2:55514869-55514888 | MS.gene03941:CDS | 50.0% | |
| GGACCCCACCAAAATTACCA+TGG | + | chr3.2:55513158-55513177 | MS.gene03941:CDS | 50.0% | |
| GGTATTCAACAAGGGCAGGA+TGG | + | chr3.2:55513563-55513582 | MS.gene03941:CDS | 50.0% | |
| GTCCATGTTGAACCACACTC+TGG | - | chr3.2:55513337-55513356 | None:intergenic | 50.0% | |
| TCAACATCAGACCGAAGCGT+TGG | + | chr3.2:55513772-55513791 | MS.gene03941:CDS | 50.0% | |
| !! | TGCTGCTGCTGATAATGGTG+CGG | - | chr3.2:55515515-55515534 | None:intergenic | 50.0% |
| AAGATCCGGCGACAAGGGAA+AGG | + | chr3.2:55515393-55515412 | MS.gene03941:CDS | 55.0% | |
| ACCATGGCGTTCAACACGGA+CGG | + | chr3.2:55513414-55513433 | MS.gene03941:CDS | 55.0% | |
| AGAGTCCTTTCCCTTGTCGC+CGG | - | chr3.2:55515401-55515420 | None:intergenic | 55.0% | |
| CCCGTCCATGTTGAATGCCA+TGG | - | chr3.2:55513490-55513509 | None:intergenic | 55.0% | |
| CTAGCCGCTGCTTCTTCCAT+AGG | - | chr3.2:55515159-55515178 | None:intergenic | 55.0% | |
| !! | TGCTGCTGATAATGGTGCGG+CGG | - | chr3.2:55515512-55515531 | None:intergenic | 55.0% |
| ACAGGCAAGATCCGGCGACA+AGG | + | chr3.2:55515387-55515406 | MS.gene03941:CDS | 60.0% | |
| CAGGCAAGATCCGGCGACAA+GGG | + | chr3.2:55515388-55515407 | MS.gene03941:CDS | 60.0% | |
| GGCATTCAACATGGACGGGG+TGG | + | chr3.2:55513491-55513510 | MS.gene03941:CDS | 60.0% | |
| TCCGTCCGTGTTGAACGCCA+TGG | - | chr3.2:55513418-55513437 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 55512939 | 55515559 | 55512939 | ID=MS.gene03941 |
| chr3.2 | mRNA | 55512939 | 55515559 | 55512939 | ID=MS.gene03941.t1;Parent=MS.gene03941 |
| chr3.2 | exon | 55512939 | 55513875 | 55512939 | ID=MS.gene03941.t1.exon1;Parent=MS.gene03941.t1 |
| chr3.2 | CDS | 55512939 | 55513875 | 55512939 | ID=cds.MS.gene03941.t1;Parent=MS.gene03941.t1 |
| chr3.2 | exon | 55513966 | 55514074 | 55513966 | ID=MS.gene03941.t1.exon2;Parent=MS.gene03941.t1 |
| chr3.2 | CDS | 55513966 | 55514074 | 55513966 | ID=cds.MS.gene03941.t1;Parent=MS.gene03941.t1 |
| chr3.2 | exon | 55514171 | 55514349 | 55514171 | ID=MS.gene03941.t1.exon3;Parent=MS.gene03941.t1 |
| chr3.2 | CDS | 55514171 | 55514349 | 55514171 | ID=cds.MS.gene03941.t1;Parent=MS.gene03941.t1 |
| chr3.2 | exon | 55514858 | 55514931 | 55514858 | ID=MS.gene03941.t1.exon4;Parent=MS.gene03941.t1 |
| chr3.2 | CDS | 55514858 | 55514931 | 55514858 | ID=cds.MS.gene03941.t1;Parent=MS.gene03941.t1 |
| chr3.2 | exon | 55515102 | 55515251 | 55515102 | ID=MS.gene03941.t1.exon5;Parent=MS.gene03941.t1 |
| chr3.2 | CDS | 55515102 | 55515251 | 55515102 | ID=cds.MS.gene03941.t1;Parent=MS.gene03941.t1 |
| chr3.2 | exon | 55515341 | 55515559 | 55515341 | ID=MS.gene03941.t1.exon6;Parent=MS.gene03941.t1 |
| chr3.2 | CDS | 55515341 | 55515559 | 55515341 | ID=cds.MS.gene03941.t1;Parent=MS.gene03941.t1 |
| Gene Sequence |
| Protein sequence |
