AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039630

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039630.t1 MTR_3g096555 78.616 318 24 2 76 349 30 347 1.92e-163 477
MS.gene039630.t1 MTR_3g096555 74.098 305 19 2 76 349 30 305 9.63e-142 420
MS.gene039630.t1 MTR_4g098870 91.765 85 7 0 359 443 297 381 2.17e-47 171
MS.gene039630.t1 MTR_4g098870 91.765 85 7 0 359 443 317 401 2.86e-47 171
MS.gene039630.t1 MTR_4g098870 91.765 85 7 0 359 443 297 381 3.70e-47 171
MS.gene039630.t1 MTR_4g098870 91.765 85 7 0 359 443 317 401 4.65e-47 171
MS.gene039630.t1 MTR_4g098870 91.765 85 7 0 359 443 336 420 4.69e-47 171
MS.gene039630.t1 MTR_1g029690 38.690 336 130 14 76 348 33 355 2.48e-44 165
MS.gene039630.t1 MTR_3g088640 60.902 133 48 1 76 204 32 164 1.54e-39 151
MS.gene039630.t1 MTR_5g014040 80.000 80 16 0 364 443 303 382 2.11e-34 135
MS.gene039630.t1 MTR_5g014040 75.294 85 16 1 364 443 263 347 2.08e-32 129
MS.gene039630.t1 MTR_5g014040 75.294 85 16 1 364 443 303 387 3.51e-32 129
MS.gene039630.t1 MTR_3g025840 63.918 97 25 4 18 113 1 88 1.92e-25 105
MS.gene039630.t1 MTR_4g078810 54.667 75 34 0 369 443 155 229 7.83e-23 100
MS.gene039630.t1 MTR_2g090675 60.000 65 26 0 370 434 159 223 1.47e-21 96.7
MS.gene039630.t1 MTR_2g450070 56.923 65 28 0 368 432 209 273 3.68e-17 84.3
MS.gene039630.t1 MTR_2g450070 56.923 65 28 0 368 432 209 273 3.98e-17 84.3
MS.gene039630.t1 MTR_3g106220 57.576 66 28 0 365 430 191 256 1.65e-16 82.4
MS.gene039630.t1 MTR_4g121020 61.667 60 23 0 371 430 110 169 2.78e-16 81.6
MS.gene039630.t1 MTR_4g121020 61.667 60 23 0 371 430 214 273 3.22e-16 81.6
MS.gene039630.t1 MTR_4g121020 61.667 60 23 0 371 430 214 273 3.22e-16 81.6
MS.gene039630.t1 MTR_4g073140 36.957 138 71 4 76 212 25 147 3.98e-16 80.5
MS.gene039630.t1 MTR_4g073140 36.957 138 71 4 76 212 25 147 6.30e-16 80.5
MS.gene039630.t1 MTR_4g073140 36.957 138 71 4 76 212 25 147 6.82e-16 80.5
MS.gene039630.t1 MTR_4g131570 61.017 59 23 0 367 425 198 256 2.31e-15 78.6
MS.gene039630.t1 MTR_1g032570 53.425 73 33 1 371 442 199 271 3.76e-15 78.2
MS.gene039630.t1 MTR_1g032570 53.425 73 33 1 371 442 130 202 3.94e-15 77.8
MS.gene039630.t1 MTR_4g131600 55.882 68 29 1 368 435 197 263 5.78e-15 77.4
MS.gene039630.t1 MTR_7g089010 57.143 56 24 0 371 426 90 145 1.83e-14 74.3
MS.gene039630.t1 MTR_4g131580 62.069 58 22 0 368 425 196 253 1.86e-14 75.9
MS.gene039630.t1 MTR_4g064730 57.143 56 24 0 371 426 130 185 3.21e-14 73.6
MS.gene039630.t1 MTR_8g079940 55.224 67 30 0 371 437 208 274 3.32e-14 75.1
MS.gene039630.t1 MTR_2g034960 53.333 60 28 0 371 430 210 269 4.60e-14 74.7
MS.gene039630.t1 MTR_1g013170 55.738 61 27 0 370 430 189 249 5.06e-14 74.3
MS.gene039630.t1 MTR_7g117705 55.738 61 27 0 370 430 189 249 6.99e-14 73.6
MS.gene039630.t1 MTR_3g102590 55.738 61 26 1 365 425 137 196 1.55e-13 70.5
MS.gene039630.t1 MTR_7g026400 50.794 63 31 0 371 433 156 218 1.76e-13 72.8
MS.gene039630.t1 MTR_1g013180 57.895 57 24 0 370 426 340 396 1.94e-13 72.8
MS.gene039630.t1 MTR_3g102600 52.727 55 26 0 371 425 82 136 2.23e-13 68.6
MS.gene039630.t1 MTR_3g102600 52.727 55 26 0 371 425 131 185 3.52e-13 69.3
MS.gene039630.t1 MTR_4g086835 41.667 72 42 0 359 430 261 332 5.94e-13 70.5
MS.gene039630.t1 MTR_3g086100 55.932 59 26 0 368 426 124 182 6.66e-13 70.9
MS.gene039630.t1 MTR_4g021790 47.826 69 36 0 358 426 154 222 7.62e-13 68.9
MS.gene039630.t1 MTR_3g086100 55.932 59 26 0 368 426 195 253 8.31e-13 70.9
MS.gene039630.t1 MTR_4g021760 53.704 54 25 0 371 424 168 221 1.32e-12 68.9
MS.gene039630.t1 MTR_3g117850 32.787 122 69 2 76 197 26 134 1.50e-12 70.1
MS.gene039630.t1 MTR_1g093080 45.205 73 39 1 357 428 196 268 1.75e-12 68.9
MS.gene039630.t1 MTR_3g102600 49.057 53 27 0 371 423 82 134 5.13e-12 63.5
MS.gene039630.t1 MTR_4g086835 41.096 73 42 1 359 430 261 333 1.82e-11 66.2
MS.gene039630.t1 MTR_3g102600 49.057 53 27 0 371 423 131 183 2.69e-11 62.8
MS.gene039630.t1 MTR_4g021855 55.357 56 25 0 371 426 167 222 2.69e-11 64.7
MS.gene039630.t1 MTR_3g102590 54.386 57 25 1 365 421 137 192 4.28e-11 62.4
MS.gene039630.t1 MTR_5g017980 53.846 52 24 0 377 428 198 249 4.44e-11 64.3
MS.gene039630.t1 MTR_5g017980 53.846 52 24 0 377 428 197 248 4.49e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039630.t1 AT5G63940 36.228 334 144 5 76 349 39 363 1.64e-53 190
MS.gene039630.t1 AT1G77280 63.636 132 45 1 76 204 38 169 4.95e-41 155
MS.gene039630.t1 AT1G77280 63.636 132 45 1 76 204 38 169 4.95e-41 155
MS.gene039630.t1 AT1G21590 55.385 130 55 1 76 202 31 160 4.23e-27 115
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.15e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.15e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.15e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.15e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.15e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.15e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.56e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.56e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.56e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.56e-25 109
MS.gene039630.t1 AT4G18020 66.667 78 23 2 367 443 293 368 1.56e-25 109
MS.gene039630.t1 AT5G44190 60.811 74 29 0 370 443 145 218 3.16e-23 100
MS.gene039630.t1 AT5G44190 60.811 74 29 0 370 443 145 218 4.25e-23 100
MS.gene039630.t1 AT2G20570 56.000 75 33 0 360 434 141 215 3.08e-22 99.0
MS.gene039630.t1 AT2G20570 66.129 62 21 0 373 434 170 231 3.14e-21 95.9
MS.gene039630.t1 AT1G21590 54.369 103 47 0 100 202 18 120 1.44e-19 92.0
MS.gene039630.t1 AT5G58080 61.905 63 24 0 368 430 190 252 4.16e-18 87.4
MS.gene039630.t1 AT3G16857 55.882 68 30 0 363 430 158 225 5.90e-16 80.5
MS.gene039630.t1 AT3G16857 55.882 68 30 0 363 430 228 295 7.39e-16 80.5
MS.gene039630.t1 AT3G16857 55.882 68 30 0 363 430 228 295 7.76e-16 80.5
MS.gene039630.t1 AT2G01760 59.322 59 24 0 368 426 131 189 1.68e-15 77.4
MS.gene039630.t1 AT2G40970 56.667 60 26 0 371 430 104 163 2.01e-15 76.3
MS.gene039630.t1 AT2G25180 60.656 61 24 0 370 430 193 253 2.48e-15 78.6
MS.gene039630.t1 AT2G01760 55.556 63 28 0 368 430 224 286 2.80e-15 77.8
MS.gene039630.t1 AT2G01760 55.556 63 28 0 368 430 196 258 2.86e-15 77.4
MS.gene039630.t1 AT5G59570 55.000 60 27 0 371 430 140 199 3.22e-15 76.6
MS.gene039630.t1 AT5G59570 55.000 60 27 0 371 430 140 199 3.22e-15 76.6
MS.gene039630.t1 AT3G10760 57.143 56 24 0 371 426 104 159 5.11e-15 76.3
MS.gene039630.t1 AT5G05090 57.143 56 24 0 371 426 80 135 5.27e-15 75.5
MS.gene039630.t1 AT3G46640 57.143 56 24 0 371 426 143 198 1.86e-14 74.7
MS.gene039630.t1 AT3G46640 57.143 56 24 0 371 426 143 198 1.86e-14 74.7
MS.gene039630.t1 AT3G46640 57.143 56 24 0 371 426 143 198 2.14e-14 74.3
MS.gene039630.t1 AT4G31920 50.000 66 33 0 360 425 171 236 3.00e-13 72.0
MS.gene039630.t1 AT1G25550 54.839 62 26 2 368 428 206 266 4.37e-13 70.5
MS.gene039630.t1 AT1G68670 46.479 71 36 2 359 428 203 272 6.15e-12 67.4
MS.gene039630.t1 AT1G67710 62.963 54 19 1 374 426 121 174 7.22e-12 67.4
MS.gene039630.t1 AT5G07210 33.600 125 66 3 318 430 161 280 8.21e-12 67.8
MS.gene039630.t1 AT1G67710 62.963 54 19 1 374 426 130 183 8.76e-12 67.4
MS.gene039630.t1 AT5G07210 33.600 125 66 3 318 430 169 288 8.96e-12 67.8
MS.gene039630.t1 AT1G67710 62.963 54 19 1 374 426 195 248 1.02e-11 67.4
MS.gene039630.t1 AT2G03500 47.761 67 33 2 367 432 229 294 1.30e-11 66.6
MS.gene039630.t1 AT2G16750 33.600 125 76 2 76 200 31 148 5.05e-11 65.1
MS.gene039630.t1 AT2G16750 33.600 125 76 2 76 200 31 148 5.05e-11 65.1
MS.gene039630.t1 AT4G37180 50.000 70 30 2 360 428 202 267 5.63e-11 64.3
MS.gene039630.t1 AT4G37180 50.000 70 30 2 360 428 209 274 5.89e-11 64.3
MS.gene039630.t1 AT3G25790 54.717 53 23 1 377 428 201 253 8.42e-11 63.9

Find 88 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTATTCCTTCTCGAATAT+TGG 0.160903 3.1:-9790509 MS.gene039630:CDS
ATCAGAACCAAATCTGAAAA+AGG 0.233092 3.1:-9794069 MS.gene039630:CDS
CTTGAGCAGTGGCTTCTCTT+TGG 0.275673 3.1:+9793400 None:intergenic
GGTACGTTTGGATTTCAAAT+TGG 0.283743 3.1:-9794047 MS.gene039630:CDS
CACGTTCTCGACACCGTAAC+TGG 0.307684 3.1:-9793930 MS.gene039630:intron
CTGTAGACTGTATAGTTTGC+AGG 0.321968 3.1:-9792741 MS.gene039630:CDS
AGACTTGGCGGTATGCCTTT+TGG 0.334375 3.1:+9793008 None:intergenic
ACGAATTGTGTGATGAGATT+TGG 0.344741 3.1:+9793510 None:intergenic
GTAATGACATTGACACGAAC+TGG 0.357434 3.1:+9794119 None:intergenic
TCTGATACCGAATTTAATCT+AGG 0.370407 3.1:-9793183 MS.gene039630:CDS
CGTAAGATCAACAATTCTTC+AGG 0.370765 3.1:+9792782 None:intergenic
GGCTGCTGCTGCTCTTGTTA+AGG 0.381941 3.1:-9793985 MS.gene039630:CDS
TAATGTGGCAAGCCATCTTC+AGG 0.386166 3.1:-9790455 MS.gene039630:intron
GTACAAGAGGTCAAAGCATT+AGG 0.388471 3.1:-9793559 MS.gene039630:CDS
TGGAAGCTTTGATCAGTTAT+CGG 0.402659 3.1:-9794148 MS.gene039630:CDS
GGCTATCGGCGTCGCTGCAA+AGG 0.403314 3.1:+9792807 None:intergenic
CAACTCTCCTAGATTAAATT+CGG 0.404379 3.1:+9793176 None:intergenic
AGGATTCTGCAATTTAAAAC+AGG 0.405335 3.1:-9793770 MS.gene039630:intron
GAGAATTGCATTACCGTTGA+AGG 0.428597 3.1:+9791007 None:intergenic
CTTGTTAAGGTTGCTCAGCC+TGG 0.443313 3.1:-9793972 MS.gene039630:CDS
AATAAAAGTGTGAAGGATTG+TGG 0.444469 3.1:-9793228 MS.gene039630:intron
TACTTTGGTCTCAGGTAGAC+TGG 0.444914 3.1:-9790588 MS.gene039630:intron
GTTGATGAAGACTTTGGATT+CGG 0.444941 3.1:-9793809 MS.gene039630:CDS
TGGCGCCACTCTCCCCGTCC+AGG 0.447030 3.1:+9792870 None:intergenic
CGAAGCAGGATGATCGGAAA+TGG 0.452472 3.1:-9790261 MS.gene039630:CDS
AATGTGAGATAAAAGCTAAT+CGG 0.462021 3.1:-9790767 MS.gene039630:CDS
CACAATTCGTTCTTCTGCGT+GGG 0.466588 3.1:-9793497 MS.gene039630:CDS
GCTACTGTAAACTTCTCATA+TGG 0.466802 3.1:-9792707 MS.gene039630:intron
GTTATCGTTGATGAAGACTT+TGG 0.468165 3.1:-9793815 MS.gene039630:CDS
GCAATGTATTTCATTCCAAA+AGG 0.470865 3.1:-9793023 MS.gene039630:CDS
TGTGTAGAGGCGATTCGGTT+CGG 0.474061 3.1:-9793591 MS.gene039630:CDS
TTGATGATTCTGCCCTGGAC+GGG 0.474807 3.1:-9792883 MS.gene039630:CDS
GAGACATATCTTACCGAAGC+AGG 0.475105 3.1:-9790275 MS.gene039630:CDS
CAAAGAGAAGCCACTGCTCA+AGG 0.480042 3.1:-9793399 MS.gene039630:intron
GAATGTGTGTAGAGGCGATT+CGG 0.484018 3.1:-9793596 MS.gene039630:CDS
CATTTCCGATCATCCTGCTT+CGG 0.484186 3.1:+9790262 None:intergenic
AATGTTGGATCTACGATCCA+TGG 0.500572 3.1:+9794191 None:intergenic
TTCCATAGATGGAGATTCCA+TGG 0.502106 3.1:-9794208 None:intergenic
AATATTGGATCTAATGAAAG+TGG 0.519493 3.1:-9790494 MS.gene039630:CDS
TCTGCCCTGGACGGGGAGAG+TGG 0.519875 3.1:-9792875 MS.gene039630:CDS
GGCGCCACTCTCCCCGTCCA+GGG 0.533172 3.1:+9792871 None:intergenic
AGAGAGATAGATACCAGTTA+CGG 0.538495 3.1:+9793917 None:intergenic
ATTAGATCCAATATTCGAGA+AGG 0.541398 3.1:+9790502 None:intergenic
AGAATTGCATTACCGTTGAA+GGG 0.543123 3.1:+9791008 None:intergenic
CTGCAAACTATACAGTCTAC+AGG 0.543233 3.1:+9792742 None:intergenic
GCTATCGGCGTCGCTGCAAA+GGG 0.543708 3.1:+9792808 None:intergenic
TCCAGTTGATGATTCTGCCC+TGG 0.546149 3.1:-9792888 MS.gene039630:intron
ACACAATTCGTTCTTCTGCG+TGG 0.546727 3.1:-9793498 MS.gene039630:CDS
GTTGATGATTCTGCCCTGGA+CGG 0.549623 3.1:-9792884 MS.gene039630:CDS
TGATGATTCTGCCCTGGACG+GGG 0.551173 3.1:-9792882 MS.gene039630:CDS
GATTCGAAACGGATGAAACC+TGG 0.556099 3.1:-9793060 MS.gene039630:CDS
GAACGTGAAGAGCGATAACA+AGG 0.559891 3.1:+9793946 None:intergenic
AGCAGAAAATCCGCTTGCTA+TGG 0.562109 3.1:-9793139 MS.gene039630:CDS
CAATTCTTCAGGTAGGCTAT+CGG 0.562206 3.1:+9792793 None:intergenic
GGTAGATTATAACCTGAAGA+TGG 0.564115 3.1:+9790443 None:intergenic
CAAAGCATTAGGAGTTTCAA+CGG 0.568807 3.1:-9793548 MS.gene039630:CDS
TCTTACCGAAGCAGGATGAT+CGG 0.574745 3.1:-9790267 MS.gene039630:CDS
GCAGCAGCAGCCATAATCAA+AGG 0.575091 3.1:+9793996 None:intergenic
GTGAAGGCAGTGGAGCAACT+AGG 0.575398 3.1:-9790541 MS.gene039630:CDS
CCGTAGTGGGTGATTCGAAA+CGG 0.579762 3.1:-9793071 MS.gene039630:CDS
TCGGTTCTCGCAGTTTACGA+AGG 0.588216 3.1:-9793790 MS.gene039630:CDS
AGCAGATCCGTATGGTACAA+TGG 0.588523 3.1:+9792850 None:intergenic
GGGCTTGACAAGGCGTAATG+TGG 0.592349 3.1:-9790470 MS.gene039630:CDS
ATCGGAAATGGCTAAATACA+AGG 0.595293 3.1:-9790249 MS.gene039630:CDS
GCGTCGCTGCAAAGGGTGAG+AGG 0.598010 3.1:+9792815 None:intergenic
GCTAGCTGCGGCCCCTTCAA+CGG 0.607642 3.1:-9791020 MS.gene039630:intron
ATTGGATCTAATGAAAGTGG+AGG 0.613074 3.1:-9790491 MS.gene039630:CDS
AGATCAACAATTCTTCAGGT+AGG 0.614664 3.1:+9792786 None:intergenic
GAATTGCATTACCGTTGAAG+GGG 0.617952 3.1:+9791009 None:intergenic
TCGGAAGCTTCTAGTACAAG+AGG 0.620244 3.1:-9793572 MS.gene039630:CDS
AGTGGCGCCATTGTACCATA+CGG 0.622576 3.1:-9792857 MS.gene039630:CDS
CCGTTTCGAATCACCCACTA+CGG 0.623469 3.1:+9793071 None:intergenic
TGAAACGGTACCATAGCAAG+CGG 0.625175 3.1:+9793129 None:intergenic
TAATGACATTGACACGAACT+GGG 0.627327 3.1:+9794120 None:intergenic
AATATAATAGCAGATCCGTA+TGG 0.631563 3.1:+9792842 None:intergenic
TTGGATCTAATGAAAGTGGA+GGG 0.637148 3.1:-9790490 MS.gene039630:CDS
TGAAAGTGGAGGGCTTGACA+AGG 0.644049 3.1:-9790480 MS.gene039630:CDS
GTGGGTGATGAATCCGTAGT+GGG 0.646157 3.1:-9793084 MS.gene039630:CDS
AGAGCGATAACAAGGTCACC+AGG 0.648194 3.1:+9793954 None:intergenic
CGTGATGATGAATCTGTGGT+GGG 0.652634 3.1:-9793102 MS.gene039630:CDS
ACGTGATGATGAATCTGTGG+TGG 0.656826 3.1:-9793103 MS.gene039630:CDS
CTTAAATTGAATGTGTGTAG+AGG 0.659048 3.1:-9793604 MS.gene039630:CDS
TGAAACAAAACCTTGAGCAG+TGG 0.663307 3.1:+9793389 None:intergenic
GGTGGGTGATGAATCCGTAG+TGG 0.665717 3.1:-9793085 MS.gene039630:CDS
AAAACGTGATGATGAATCTG+TGG 0.673229 3.1:-9793106 MS.gene039630:CDS
TCGCTGCAAAGGGTGAGAGG+AGG 0.680737 3.1:+9792818 None:intergenic
TTGCGAATGAGTGAACAACC+AGG 0.714448 3.1:+9793042 None:intergenic
AACTACCTACTAGCTAGCTG+CGG 0.733731 3.1:-9791032 MS.gene039630:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTAATGTAGTTTAAA+AGG + chr3.1:9793228-9793247 None:intergenic 10.0%
!! TATGTATAAATGAATTATTA+AGG + chr3.1:9792862-9792881 None:intergenic 10.0%
!!! AATAAAAAAGTTTTACATAA+AGG - chr3.1:9793009-9793028 MS.gene039630:CDS 10.0%
!!! AATTTTGTTTTTAGAAAATT+TGG - chr3.1:9791841-9791860 MS.gene039630:intron 10.0%
!!! ATAAAAAAGTTTTACATAAA+GGG - chr3.1:9793010-9793029 MS.gene039630:CDS 10.0%
!!! TTTTTTAAGATCTTTTATTT+AGG - chr3.1:9793043-9793062 MS.gene039630:CDS 10.0%
!! GTAAGAAATAAATACTATTA+TGG + chr3.1:9792889-9792908 None:intergenic 15.0%
!! TATAAATGAATTATTAAGGA+CGG + chr3.1:9792858-9792877 None:intergenic 15.0%
!! TATTGTATAATATTATGTTC+TGG - chr3.1:9792334-9792353 MS.gene039630:intron 15.0%
!! TTTATTCGTAAAAATCAAAT+AGG + chr3.1:9791204-9791223 None:intergenic 15.0%
!!! AAATTAATTTGTTTATGATC+TGG + chr3.1:9791536-9791555 None:intergenic 15.0%
!!! ATTTTTACATTTGTTTCATA+TGG - chr3.1:9792510-9792529 MS.gene039630:intron 15.0%
!!! CATATTCTTTTAAAATTAGT+GGG - chr3.1:9792184-9792203 MS.gene039630:intron 15.0%
!!! TGATATTCATATATTTTCAT+AGG - chr3.1:9794086-9794105 MS.gene039630:CDS 15.0%
!! AAAACTGTATTAAGAAAATC+AGG + chr3.1:9793836-9793855 None:intergenic 20.0%
!! AAGTAGTTAGAGTAAAAATT+GGG + chr3.1:9791793-9791812 None:intergenic 20.0%
!! GAAGATATATGAGAAAAAAA+GGG + chr3.1:9792427-9792446 None:intergenic 20.0%
!! GTTGAATTATTATAGTGTTA+TGG - chr3.1:9792720-9792739 MS.gene039630:CDS 20.0%
!! TAAGTAGTTAGAGTAAAAAT+TGG + chr3.1:9791794-9791813 None:intergenic 20.0%
!! TGAAGATATATGAGAAAAAA+AGG + chr3.1:9792428-9792447 None:intergenic 20.0%
!! TGCAAAAATCTAGATTAAAA+TGG + chr3.1:9792294-9792313 None:intergenic 20.0%
!! TGTAATTTAATCATATGTGT+TGG - chr3.1:9792038-9792057 MS.gene039630:intron 20.0%
!! TTTAAAAGAATATGGTCTAT+CGG + chr3.1:9792178-9792197 None:intergenic 20.0%
!!! AAAGTACATTTGTTTTTCAA+CGG - chr3.1:9791468-9791487 MS.gene039630:intron 20.0%
!!! AACTACTCTAATGTTTATTT+TGG - chr3.1:9793497-9793516 MS.gene039630:CDS 20.0%
!!! ACTACTCTAATGTTTATTTT+GGG - chr3.1:9793498-9793517 MS.gene039630:CDS 20.0%
!!! ATCTTTTATTTAGGAATTGA+TGG - chr3.1:9793052-9793071 MS.gene039630:CDS 20.0%
!!! ATTAATTACAGTTTTGAATG+AGG + chr3.1:9794059-9794078 None:intergenic 20.0%
!!! ATTATATCTAGTGTCAATTT+TGG + chr3.1:9792948-9792967 None:intergenic 20.0%
!!! CCACTAATTTTAAAAGAATA+TGG + chr3.1:9792186-9792205 None:intergenic 20.0%
!!! CCATATTCTTTTAAAATTAG+TGG - chr3.1:9792183-9792202 MS.gene039630:intron 20.0%
!!! CTAATCAAACTAGTTTTATT+TGG - chr3.1:9792207-9792226 MS.gene039630:intron 20.0%
!!! TGAAAAACAAATGTACTTTT+CGG + chr3.1:9791467-9791486 None:intergenic 20.0%
!!! TGATTTTCTCAAATTATTAG+CGG + chr3.1:9792008-9792027 None:intergenic 20.0%
!!! TGATTTTCTTAATACAGTTT+TGG - chr3.1:9793835-9793854 MS.gene039630:intron 20.0%
!!! TTACTATTTTGGATTTAGTT+CGG - chr3.1:9791112-9791131 MS.gene039630:intron 20.0%
!!! TTGTTTTTAGAAAATTTGGT+TGG - chr3.1:9791845-9791864 MS.gene039630:intron 20.0%
! AAAAAAGTAGTAACTGTTAG+AGG + chr3.1:9793534-9793553 None:intergenic 25.0%
! AAAAATTGGGAAACTAAAGA+TGG + chr3.1:9791780-9791799 None:intergenic 25.0%
! AAATAACGATATACGGAAAT+TGG + chr3.1:9792138-9792157 None:intergenic 25.0%
! AACATTATGAGAAGAATGAA+TGG + chr3.1:9793730-9793749 None:intergenic 25.0%
! AAGCATGAAATAACGATATA+CGG + chr3.1:9792145-9792164 None:intergenic 25.0%
! AATATTGGATCTAATGAAAG+TGG - chr3.1:9793952-9793971 MS.gene039630:CDS 25.0%
! AATGTGAGATAAAAGCTAAT+CGG - chr3.1:9793679-9793698 MS.gene039630:intron 25.0%
! GAATATAACCTTATACAACA+TGG + chr3.1:9793787-9793806 None:intergenic 25.0%
! TACATTTGTTTCATATGGAT+TGG - chr3.1:9792515-9792534 MS.gene039630:intron 25.0%
! TCAGTTCTACTTACTTAAAT+AGG - chr3.1:9792234-9792253 MS.gene039630:intron 25.0%
! TCTTATGCATTCTATATTTC+TGG + chr3.1:9794153-9794172 None:intergenic 25.0%
! TTGGAAACACCATTATATTA+TGG + chr3.1:9793195-9793214 None:intergenic 25.0%
! TTGTTTATCCATGTTGTATA+AGG - chr3.1:9793776-9793795 MS.gene039630:CDS 25.0%
!! ATTATTTACTCTCGTTTTCT+CGG + chr3.1:9790739-9790758 None:intergenic 25.0%
!! TATATCGTTATTTCATGCTT+TGG - chr3.1:9792145-9792164 MS.gene039630:intron 25.0%
!! TGTATGAATCGTTACTATTT+TGG - chr3.1:9791101-9791120 MS.gene039630:intron 25.0%
!! TTTAAAAGGTAGTCTTCTTT+TGG + chr3.1:9793214-9793233 None:intergenic 25.0%
!! TTTTTCTAGATCTTGAAGTT+TGG + chr3.1:9792553-9792572 None:intergenic 25.0%
!!! AAGTACATTTGTTTTTCAAC+GGG - chr3.1:9791469-9791488 MS.gene039630:intron 25.0%
!!! ACTACTTTTTTTTCTTCTTC+TGG - chr3.1:9793543-9793562 MS.gene039630:CDS 25.0%
!!! GTGTTACTTTTTTGTTCAAT+TGG - chr3.1:9792698-9792717 MS.gene039630:intron 25.0%
!!! TCGTTCATTTTTTCTTTGTT+TGG - chr3.1:9790710-9790729 MS.gene039630:intron 25.0%
!!! TTAATACAGTTTTGGTACTT+TGG - chr3.1:9793843-9793862 MS.gene039630:intron 25.0%
!!! TTTTACGAATAAAAGTGTGA+AGG - chr3.1:9791211-9791230 MS.gene039630:intron 25.0%
AATATAATAGCAGATCCGTA+TGG + chr3.1:9791607-9791626 None:intergenic 30.0%
ACAACATCTGCAAATAAAGT+AGG - chr3.1:9793642-9793661 MS.gene039630:intron 30.0%
AGAACCTGAGAGATATTATT+AGG - chr3.1:9792976-9792995 MS.gene039630:intron 30.0%
AGCAAGGCATATAATTGAAA+AGG + chr3.1:9793097-9793116 None:intergenic 30.0%
AGGTAATGCATACTAACATA+AGG - chr3.1:9794106-9794125 MS.gene039630:CDS 30.0%
AGTATAGTTGTATCAACACT+TGG - chr3.1:9793389-9793408 MS.gene039630:intron 30.0%
AGTGAGAAGACAAAAAATGT+TGG + chr3.1:9790273-9790292 None:intergenic 30.0%
ATCAGAACCAAATCTGAAAA+AGG - chr3.1:9790377-9790396 MS.gene039630:intron 30.0%
ATGCACAGATATATAGACAT+TGG - chr3.1:9792579-9792598 MS.gene039630:intron 30.0%
ATGGATATTGAAAATGTGTG+AGG + chr3.1:9792635-9792654 None:intergenic 30.0%
ATTAGATCCAATATTCGAGA+AGG + chr3.1:9793947-9793966 None:intergenic 30.0%
CAACTCTCCTAGATTAAATT+CGG + chr3.1:9791273-9791292 None:intergenic 30.0%
CAATGAACAGTGTGAAATAA+CGG + chr3.1:9793759-9793778 None:intergenic 30.0%
CTTAAATTGAATGTGTGTAG+AGG - chr3.1:9790842-9790861 MS.gene039630:intron 30.0%
GAAATCAAGTGATAGTAACT+CGG - chr3.1:9792362-9792381 MS.gene039630:intron 30.0%
GAACCTGAGAGATATTATTA+GGG - chr3.1:9792977-9792996 MS.gene039630:intron 30.0%
GCAAGGCATATAATTGAAAA+GGG + chr3.1:9793096-9793115 None:intergenic 30.0%
GCAATGTATTTCATTCCAAA+AGG - chr3.1:9791423-9791442 MS.gene039630:intron 30.0%
GTTCTCTCACCATAATATAA+TGG - chr3.1:9793183-9793202 MS.gene039630:CDS 30.0%
TATCCCTAATAATATCTCTC+AGG + chr3.1:9792983-9793002 None:intergenic 30.0%
TCAGAACCAAATCTGAAAAA+GGG - chr3.1:9790378-9790397 MS.gene039630:intron 30.0%
TCTGATACCGAATTTAATCT+AGG - chr3.1:9791263-9791282 MS.gene039630:intron 30.0%
TTACTTCTTACCTTGGATTT+GGG - chr3.1:9792392-9792411 MS.gene039630:intron 30.0%
TTAGAAAATTTGGTTGGCAA+AGG - chr3.1:9791851-9791870 MS.gene039630:intron 30.0%
TTTGGGAAAAAAAGAACAAG+AGG - chr3.1:9793149-9793168 MS.gene039630:CDS 30.0%
! AATAAAAGTGTGAAGGATTG+TGG - chr3.1:9791218-9791237 MS.gene039630:intron 30.0%
! AGGATTCTGCAATTTAAAAC+AGG - chr3.1:9790676-9790695 MS.gene039630:intron 30.0%
! ATATCTAGTGTCAATTTTGG+TGG + chr3.1:9792945-9792964 None:intergenic 30.0%
! GAAGTTTTCTCCTTTGATTA+TGG - chr3.1:9790440-9790459 MS.gene039630:intron 30.0%
! TTAATCATATGTGTTGGTGT+TGG - chr3.1:9792044-9792063 MS.gene039630:intron 30.0%
! TTGTGTTGTGTTTTATCTTC+AGG - chr3.1:9790814-9790833 MS.gene039630:intron 30.0%
! TTTTTCTGCTATGGCAAAAA+AGG + chr3.1:9791171-9791190 None:intergenic 30.0%
!! AGTACATTTGTTTTTCAACG+GGG - chr3.1:9791470-9791489 MS.gene039630:intron 30.0%
!! TATCTAGTGTCAATTTTGGT+GGG + chr3.1:9792944-9792963 None:intergenic 30.0%
!! TCATCATCACGTTTTTGAAA+CGG + chr3.1:9791335-9791354 None:intergenic 30.0%
!! TTGTTTCATATGGATTGGAT+TGG - chr3.1:9792520-9792539 MS.gene039630:intron 30.0%
!!! CTTGTACTTTTTTGCTTCTA+CGG + chr3.1:9793337-9793356 None:intergenic 30.0%
!!! GACATTTTTTTGTGTGTAGA+GGG - chr3.1:9790596-9790615 MS.gene039630:intron 30.0%
!!! TGACATTTTTTTGTGTGTAG+AGG - chr3.1:9790595-9790614 MS.gene039630:intron 30.0%
!!! TGAGGTATTGAAATAGCTTT+TGG + chr3.1:9794041-9794060 None:intergenic 30.0%
ACAAGCATATCAAAGAGACA+AGG + chr3.1:9792675-9792694 None:intergenic 35.0%
ACGAATTGTGTGATGAGATT+TGG + chr3.1:9790939-9790958 None:intergenic 35.0%
AGAATTGCATTACCGTTGAA+GGG + chr3.1:9793441-9793460 None:intergenic 35.0%
AGAGAGATAGATACCAGTTA+CGG + chr3.1:9790532-9790551 None:intergenic 35.0%
AGATCAACAATTCTTCAGGT+AGG + chr3.1:9791663-9791682 None:intergenic 35.0%
ATCATGCACATATATGAGCA+AGG - chr3.1:9792790-9792809 MS.gene039630:CDS 35.0%
ATCGGAAATGGCTAAATACA+AGG - chr3.1:9794197-9794216 MS.gene039630:CDS 35.0%
ATTGAAAATGTGTGAGGTGT+GGG + chr3.1:9792629-9792648 None:intergenic 35.0%
ATTGGATCTAATGAAAGTGG+AGG - chr3.1:9793955-9793974 MS.gene039630:CDS 35.0%
CAAAAAAATTGTGAAGGCAG+TGG - chr3.1:9793895-9793914 MS.gene039630:intron 35.0%
CCATAGCAGAAAAATTACAG+TGG - chr3.1:9791177-9791196 MS.gene039630:intron 35.0%
CGTAAGATCAACAATTCTTC+AGG + chr3.1:9791667-9791686 None:intergenic 35.0%
CTTACTTCTTACCTTGGATT+TGG - chr3.1:9792391-9792410 MS.gene039630:intron 35.0%
GCTACTGTAAACTTCTCATA+TGG - chr3.1:9791739-9791758 MS.gene039630:intron 35.0%
GCTGCACAAAAAAATTGTGA+AGG - chr3.1:9793889-9793908 MS.gene039630:intron 35.0%
GGTACGTTTGGATTTCAAAT+TGG - chr3.1:9790399-9790418 MS.gene039630:intron 35.0%
GGTAGATTATAACCTGAAGA+TGG + chr3.1:9794006-9794025 None:intergenic 35.0%
TAATGACATTGACACGAACT+GGG + chr3.1:9790329-9790348 None:intergenic 35.0%
TACTTCTTACCTTGGATTTG+GGG - chr3.1:9792393-9792412 MS.gene039630:intron 35.0%
TATTGAAAATGTGTGAGGTG+TGG + chr3.1:9792630-9792649 None:intergenic 35.0%
TCATGCACATATATGAGCAA+GGG - chr3.1:9792791-9792810 MS.gene039630:CDS 35.0%
TGCAGAAATTGAGAAAGAGT+AGG - chr3.1:9792310-9792329 MS.gene039630:intron 35.0%
TGGAAATCATTATAGCAGCA+TGG - chr3.1:9792740-9792759 MS.gene039630:CDS 35.0%
TGTGTACTTACTTCTTACCT+TGG - chr3.1:9792385-9792404 MS.gene039630:intron 35.0%
TTGGATCTAATGAAAGTGGA+GGG - chr3.1:9793956-9793975 MS.gene039630:CDS 35.0%
! AAAAAGTACAAGCTTGGAGT+TGG - chr3.1:9793345-9793364 MS.gene039630:intron 35.0%
! AAAACGTGATGATGAATCTG+TGG - chr3.1:9791340-9791359 MS.gene039630:intron 35.0%
! AAAAGTACAAGCTTGGAGTT+GGG - chr3.1:9793346-9793365 MS.gene039630:intron 35.0%
! AATCTGAAAAAGGGTACGTT+TGG - chr3.1:9790387-9790406 MS.gene039630:intron 35.0%
! AGTGCATAGCAGTAAGATTT+TGG - chr3.1:9792092-9792111 MS.gene039630:intron 35.0%
! CAAAGCATTAGGAGTTTCAA+CGG - chr3.1:9790898-9790917 MS.gene039630:intron 35.0%
! CCACTGTAATTTTTCTGCTA+TGG + chr3.1:9791180-9791199 None:intergenic 35.0%
! GAAGCAAAAAAGTACAAGCT+TGG - chr3.1:9793339-9793358 MS.gene039630:intron 35.0%
! GTTATCGTTGATGAAGACTT+TGG - chr3.1:9790631-9790650 MS.gene039630:intron 35.0%
! GTTGATGAAGACTTTGGATT+CGG - chr3.1:9790637-9790656 MS.gene039630:intron 35.0%
! TGGAAGCTTTGATCAGTTAT+CGG - chr3.1:9790298-9790317 MS.gene039630:intron 35.0%
! TTGTGTTTTCGTCAAAACGA+CGG - chr3.1:9790771-9790790 MS.gene039630:CDS 35.0%
! TTTTGTCTTCTCACTGTACA+TGG - chr3.1:9790278-9790297 MS.gene039630:CDS 35.0%
!! AAATAGCTTTTGGAAACCGT+GGG + chr3.1:9794031-9794050 None:intergenic 35.0%
!! CATGTAGAGGTGATTTGTTT+GGG - chr3.1:9793132-9793151 MS.gene039630:CDS 35.0%
!! GGAGTTTCAACGGTTATTTT+AGG - chr3.1:9790908-9790927 MS.gene039630:intron 35.0%
!! TCGTTTTGACGAAAACACAA+CGG + chr3.1:9790771-9790790 None:intergenic 35.0%
!! TCTGTTTTCGCTGTTGATAA+TGG - chr3.1:9791010-9791029 MS.gene039630:intron 35.0%
!!! AACGTACCCTTTTTCAGATT+TGG + chr3.1:9790387-9790406 None:intergenic 35.0%
!!! ACAATTTTTTTGTGCAGCTC+TGG + chr3.1:9793887-9793906 None:intergenic 35.0%
!!! TCAATTTTGGTGGGTTAGTT+CGG + chr3.1:9792935-9792954 None:intergenic 35.0%
AACTTTGTGGATGCATGTAG+AGG - chr3.1:9793119-9793138 MS.gene039630:CDS 40.0%
AATGTTGGATCTACGATCCA+TGG + chr3.1:9790258-9790277 None:intergenic 40.0%
CAATTCTTCAGGTAGGCTAT+CGG + chr3.1:9791656-9791675 None:intergenic 40.0%
CGCTATTCCTTCTCGAATAT+TGG - chr3.1:9793937-9793956 MS.gene039630:CDS 40.0%
CTGCAAACTATACAGTCTAC+AGG + chr3.1:9791707-9791726 None:intergenic 40.0%
GAATTGCATTACCGTTGAAG+GGG + chr3.1:9793440-9793459 None:intergenic 40.0%
GACTACAGATGAAGAATGAC+TGG + chr3.1:9791510-9791529 None:intergenic 40.0%
GAGAATTGCATTACCGTTGA+AGG + chr3.1:9793442-9793461 None:intergenic 40.0%
GGATCTGTGTGTATCATTGA+TGG + chr3.1:9792654-9792673 None:intergenic 40.0%
GGTTATAATCTACCTTCCCA+CGG - chr3.1:9794012-9794031 MS.gene039630:CDS 40.0%
GTAATGACATTGACACGAAC+TGG + chr3.1:9790330-9790349 None:intergenic 40.0%
TACAGATGAAGAATGACTGG+TGG + chr3.1:9791507-9791526 None:intergenic 40.0%
TATGCCTTGCTCAAACTTTG+TGG - chr3.1:9793106-9793125 MS.gene039630:CDS 40.0%
TGAAACAAAACCTTGAGCAG+TGG + chr3.1:9791060-9791079 None:intergenic 40.0%
! CTGTAGACTGTATAGTTTGC+AGG - chr3.1:9791705-9791724 MS.gene039630:intron 40.0%
! GTACAAGAGGTCAAAGCATT+AGG - chr3.1:9790887-9790906 MS.gene039630:intron 40.0%
!! AGTTTTGGTACTTTGGTCTC+AGG - chr3.1:9793850-9793869 MS.gene039630:intron 40.0%
!! GAAATAGCTTTTGGAAACCG+TGG + chr3.1:9794032-9794051 None:intergenic 40.0%
!! GCATGTAGAGGTGATTTGTT+TGG - chr3.1:9793131-9793150 MS.gene039630:CDS 40.0%
AACTACCTACTAGCTAGCTG+CGG - chr3.1:9793414-9793433 MS.gene039630:CDS 45.0%
ACACAATTCGTTCTTCTGCG+TGG - chr3.1:9790948-9790967 MS.gene039630:intron 45.0%
AGCAGATCCGTATGGTACAA+TGG + chr3.1:9791599-9791618 None:intergenic 45.0%
ATGCACAAACATTGACACGC+GGG - chr3.1:9791980-9791999 MS.gene039630:intron 45.0%
CAACTATACTCCTCTGCCAA+CGG + chr3.1:9793379-9793398 None:intergenic 45.0%
CACAATTCGTTCTTCTGCGT+GGG - chr3.1:9790949-9790968 MS.gene039630:intron 45.0%
CATTTCCGATCATCCTGCTT+CGG + chr3.1:9794187-9794206 None:intergenic 45.0%
GAACGTGAAGAGCGATAACA+AGG + chr3.1:9790503-9790522 None:intergenic 45.0%
GAATGTGTGTAGAGGCGATT+CGG - chr3.1:9790850-9790869 MS.gene039630:intron 45.0%
GAGACATATCTTACCGAAGC+AGG - chr3.1:9794171-9794190 MS.gene039630:CDS 45.0%
GATGCACAAACATTGACACG+CGG - chr3.1:9791979-9791998 MS.gene039630:intron 45.0%
GATTCGAAACGGATGAAACC+TGG - chr3.1:9791386-9791405 MS.gene039630:intron 45.0%
GCATCCACAAAGTTTGAGCA+AGG + chr3.1:9793113-9793132 None:intergenic 45.0%
TAATGTGGCAAGCCATCTTC+AGG - chr3.1:9793991-9794010 MS.gene039630:CDS 45.0%
TACCTTGGATTTGGGGATAC+TGG - chr3.1:9792400-9792419 MS.gene039630:intron 45.0%
TACTTTGGTCTCAGGTAGAC+TGG - chr3.1:9793858-9793877 MS.gene039630:intron 45.0%
TCGGAAGCTTCTAGTACAAG+AGG - chr3.1:9790874-9790893 MS.gene039630:intron 45.0%
TCTTACCGAAGCAGGATGAT+CGG - chr3.1:9794179-9794198 MS.gene039630:CDS 45.0%
TCTTACTGCTATGCACTCCT+CGG + chr3.1:9792089-9792108 None:intergenic 45.0%
TGAAACGGTACCATAGCAAG+CGG + chr3.1:9791320-9791339 None:intergenic 45.0%
TTGCGAATGAGTGAACAACC+AGG + chr3.1:9791407-9791426 None:intergenic 45.0%
! ACGTGATGATGAATCTGTGG+TGG - chr3.1:9791343-9791362 MS.gene039630:intron 45.0%
! AGCAAGGGCACACTTGAATA+TGG - chr3.1:9792806-9792825 MS.gene039630:CDS 45.0%
! AGCAGAAAATCCGCTTGCTA+TGG - chr3.1:9791307-9791326 MS.gene039630:intron 45.0%
! CGTGATGATGAATCTGTGGT+GGG - chr3.1:9791344-9791363 MS.gene039630:intron 45.0%
! TGTACTTTTCGGCGAAGACT+TGG + chr3.1:9791456-9791475 None:intergenic 45.0%
!! ATGTGTTGGTGTTGGACACT+GGG - chr3.1:9792052-9792071 MS.gene039630:intron 45.0%
!! TATGTGTTGGTGTTGGACAC+TGG - chr3.1:9792051-9792070 MS.gene039630:intron 45.0%
!! AGAAATAATTAATAAATTAA+AGG - chr3.1:9793265-9793284 MS.gene039630:intron 5.0%
AGAGCGATAACAAGGTCACC+AGG + chr3.1:9790495-9790514 None:intergenic 50.0%
AGTGGCGCCATTGTACCATA+CGG - chr3.1:9791589-9791608 MS.gene039630:intron 50.0%
CAAAGAGAAGCCACTGCTCA+AGG - chr3.1:9791047-9791066 MS.gene039630:intron 50.0%
CCGTTTCGAATCACCCACTA+CGG + chr3.1:9791378-9791397 None:intergenic 50.0%
CGAAGCAGGATGATCGGAAA+TGG - chr3.1:9794185-9794204 MS.gene039630:CDS 50.0%
CTTGAGCAGTGGCTTCTCTT+TGG + chr3.1:9791049-9791068 None:intergenic 50.0%
CTTGTTAAGGTTGCTCAGCC+TGG - chr3.1:9790474-9790493 MS.gene039630:CDS 50.0%
GACCAGTATCCCCAAATCCA+AGG + chr3.1:9792405-9792424 None:intergenic 50.0%
GCAGCAGCAGCCATAATCAA+AGG + chr3.1:9790453-9790472 None:intergenic 50.0%
GTGGGTGATGAATCCGTAGT+GGG - chr3.1:9791362-9791381 MS.gene039630:intron 50.0%
TCCAGGGCAGAATCATCAAC+TGG + chr3.1:9791562-9791581 None:intergenic 50.0%
TCGGTTCTCGCAGTTTACGA+AGG - chr3.1:9790656-9790675 MS.gene039630:intron 50.0%
TGAAAGTGGAGGGCTTGACA+AGG - chr3.1:9793966-9793985 MS.gene039630:CDS 50.0%
TGTGAGGTGTGGGAAGAAGA+GGG + chr3.1:9792619-9792638 None:intergenic 50.0%
! ACTTTTCGGCGAAGACTTGG+CGG + chr3.1:9791453-9791472 None:intergenic 50.0%
! AGACTTGGCGGTATGCCTTT+TGG + chr3.1:9791441-9791460 None:intergenic 50.0%
! TTGATGATTCTGCCCTGGAC+GGG - chr3.1:9791563-9791582 MS.gene039630:intron 50.0%
!! AGCTTTTGGAAACCGTGGGA+AGG + chr3.1:9794027-9794046 None:intergenic 50.0%
!! CCGTAGTGGGTGATTCGAAA+CGG - chr3.1:9791375-9791394 MS.gene039630:intron 50.0%
!! GTTGATGATTCTGCCCTGGA+CGG - chr3.1:9791562-9791581 MS.gene039630:intron 50.0%
!! TCCAGTTGATGATTCTGCCC+TGG - chr3.1:9791558-9791577 MS.gene039630:intron 50.0%
!! TGTGTAGAGGCGATTCGGTT+CGG - chr3.1:9790855-9790874 MS.gene039630:intron 50.0%
ACTGGGACACATCTAGTCCG+AGG - chr3.1:9792069-9792088 MS.gene039630:intron 55.0%
CACGTTCTCGACACCGTAAC+TGG - chr3.1:9790516-9790535 MS.gene039630:CDS 55.0%
GGCTGCTGCTGCTCTTGTTA+AGG - chr3.1:9790461-9790480 MS.gene039630:CDS 55.0%
GGGCTTGACAAGGCGTAATG+TGG - chr3.1:9793976-9793995 MS.gene039630:CDS 55.0%
GGTGGGTGATGAATCCGTAG+TGG - chr3.1:9791361-9791380 MS.gene039630:intron 55.0%
GTGAAGGCAGTGGAGCAACT+AGG - chr3.1:9793905-9793924 MS.gene039630:intron 55.0%
GTGTGAGGTGTGGGAAGAAG+AGG + chr3.1:9792620-9792639 None:intergenic 55.0%
TGATGATTCTGCCCTGGACG+GGG - chr3.1:9791564-9791583 MS.gene039630:intron 55.0%
GCTATCGGCGTCGCTGCAAA+GGG + chr3.1:9791641-9791660 None:intergenic 60.0%
GGAGTTGGGACAACTGCCGT+TGG - chr3.1:9793360-9793379 MS.gene039630:intron 60.0%
TCGCTGCAAAGGGTGAGAGG+AGG + chr3.1:9791631-9791650 None:intergenic 60.0%
AGGGGCCGCAGCTAGCTAGT+AGG + chr3.1:9793422-9793441 None:intergenic 65.0%
GCGTCGCTGCAAAGGGTGAG+AGG + chr3.1:9791634-9791653 None:intergenic 65.0%
GCTAGCTGCGGCCCCTTCAA+CGG - chr3.1:9793426-9793445 MS.gene039630:CDS 65.0%
GGCTATCGGCGTCGCTGCAA+AGG + chr3.1:9791642-9791661 None:intergenic 65.0%
GGGACAACTGCCGTTGGCAG+AGG - chr3.1:9793366-9793385 MS.gene039630:intron 65.0%
TCTGCCCTGGACGGGGAGAG+TGG - chr3.1:9791571-9791590 MS.gene039630:intron 70.0%
GGCGCCACTCTCCCCGTCCA+GGG + chr3.1:9791578-9791597 None:intergenic 75.0%
TGGCGCCACTCTCCCCGTCC+AGG + chr3.1:9791579-9791598 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 9790246 9794222 9790246 ID=MS.gene039630
chr3.1 mRNA 9790246 9794222 9790246 ID=MS.gene039630.t1;Parent=MS.gene039630
chr3.1 exon 9793931 9794222 9793931 ID=MS.gene039630.t1.exon1;Parent=MS.gene039630.t1
chr3.1 CDS 9793931 9794222 9793931 ID=cds.MS.gene039630.t1;Parent=MS.gene039630.t1
chr3.1 exon 9793771 9793853 9793771 ID=MS.gene039630.t1.exon2;Parent=MS.gene039630.t1
chr3.1 CDS 9793771 9793853 9793771 ID=cds.MS.gene039630.t1;Parent=MS.gene039630.t1
chr3.1 exon 9793400 9793632 9793400 ID=MS.gene039630.t1.exon3;Parent=MS.gene039630.t1
chr3.1 CDS 9793400 9793632 9793400 ID=cds.MS.gene039630.t1;Parent=MS.gene039630.t1
chr3.1 exon 9792998 9793242 9792998 ID=MS.gene039630.t1.exon4;Parent=MS.gene039630.t1
chr3.1 CDS 9792998 9793242 9792998 ID=cds.MS.gene039630.t1;Parent=MS.gene039630.t1
chr3.1 exon 9792708 9792905 9792708 ID=MS.gene039630.t1.exon5;Parent=MS.gene039630.t1
chr3.1 CDS 9792708 9792905 9792708 ID=cds.MS.gene039630.t1;Parent=MS.gene039630.t1
chr3.1 exon 9791021 9791041 9791021 ID=MS.gene039630.t1.exon6;Parent=MS.gene039630.t1
chr3.1 CDS 9791021 9791041 9791021 ID=cds.MS.gene039630.t1;Parent=MS.gene039630.t1
chr3.1 exon 9790755 9790804 9790755 ID=MS.gene039630.t1.exon7;Parent=MS.gene039630.t1
chr3.1 CDS 9790755 9790804 9790755 ID=cds.MS.gene039630.t1;Parent=MS.gene039630.t1
chr3.1 exon 9790456 9790596 9790456 ID=MS.gene039630.t1.exon8;Parent=MS.gene039630.t1
chr3.1 CDS 9790456 9790596 9790456 ID=cds.MS.gene039630.t1;Parent=MS.gene039630.t1
chr3.1 exon 9790246 9790314 9790246 ID=MS.gene039630.t1.exon9;Parent=MS.gene039630.t1
chr3.1 CDS 9790246 9790314 9790246 ID=cds.MS.gene039630.t1;Parent=MS.gene039630.t1
Gene Sequence

>MS.gene039630

ATGGAGATTCCATGGATCGTAGATCCAACATTTTTTGTCTTCTCACTGTACATGGAAGCTTTGATCAGTTATCGGATCAACCCAGTTCGTGTCAATGTCATTACAAAGCAGCGATCTTGTTTTCTGTTTGAATCAGAACCAAATCTGAAAAAGGGTACGTTTGGATTTCAAATTGGAGTCGTGAACAAGAAGAAGAAGTTTTCTCCTTTGATTATGGCTGCTGCTGCTCTTGTTAAGGTTGCTCAGCCTGGTGACCTTGTTATCGCTCTTCACGTTCTCGACACCGTAACTGGTATCTATCTCTCTCTAAGAGCATTGTATTTTTTTTTGTTGTGTTGAATCTAGAATGTGACATTTTTTTGTGTGTAGAGGGAACATCGTCGTTGTTATCGTTGATGAAGACTTTGGATTCGGTTCTCGCAGTTTACGAAGGATTCTGCAATTTAAAACAGGTTTGTTTTGCTTCGTTCATTTTTTCTTTGTTTGGATGCCGAGAAAACGAGAGTAAATAATTTTTAGTAACCGTTGTGTTTTCGTCAAAACGACGGAAAATAATTAACTAAGTTTGTTGTGTTGTGTTTTATCTTCAGGTTGATCTTAAATTGAATGTGTGTAGAGGCGATTCGGTTCGGAAGCTTCTAGTACAAGAGGTCAAAGCATTAGGAGTTTCAACGGTTATTTTAGGAACTTCCAAATCTCATCACACAATTCGTTCTTCTGCGTGGGTTGCTAAGTATTGTGCGAAAAAATTGCATAAATGTGTTTCTGTTTTCGCTGTTGATAATGGAAAAATTGCTTTTCCAAAGAGAAGCCACTGCTCAAGGTTTTGTTTCACTTTCATTTTTTGTATTTTTGTGTATGAATCGTTACTATTTTGGATTTAGTTCGGATGCAATTATTTTTGTGTATGAATTTTTTTTTTCCTTTTTTGCCATAGCAGAAAAATTACAGTGGTCCTATTTGATTTTTACGAATAAAAGTGTGAAGGATTGTGGAAGTTGTTCTCTGCGCGAGATTTCTGATACCGAATTTAATCTAGGAGAGTTGCTTGATTATTGTGAAGCAGAAAATCCGCTTGCTATGGTACCGTTTCAAAAACGTGATGATGAATCTGTGGTGGGTGATGAATCCGTAGTGGGTGATTCGAAACGGATGAAACCTGGTTGTTCACTCATTCGCAATGTATTTCATTCCAAAAGGCATACCGCCAAGTCTTCGCCGAAAAGTACATTTGTTTTTCAACGGGGAGTATGACATTCCACCAGTCATTCTTCATCTGTAGTCTATCCAGATCATAAACAAATTAATTTGATCCAGTTGATGATTCTGCCCTGGACGGGGAGAGTGGCGCCATTGTACCATACGGATCTGCTATTATATTACCTCCTCTCACCCTTTGCAGCGACGCCGATAGCCTACCTGAAGAATTGTTGATCTTACGAGATAAATACTCATCTTCCTGTAGACTGTATAGTTTGCAGGAACTTGTAGCTGCTACTGTAAACTTCTCATATGGTAAGCTTTCATGATTCCATCTTTAGTTTCCCAATTTTTACTCTAACTACTTATTTGAGATATGTTCTGACAGTTTCTTTAATTTTGTTTTTAGAAAATTTGGTTGGCAAAGGTTTACAGAATTCTTACATGTTTGTATCTTTTTATCTATTTTACAATATAGTTCATAATTATATTTCATTATTTTGATCTAGTTATATTTAGTAGTTGATAACTATGATGCACAAACATTGACACGCGGGTGCCGCTAATAATTTGAGAAAATCATATAATTCAGTGTAATTTAATCATATGTGTTGGTGTTGGACACTGGGACACATCTAGTCCGAGGAGTGCATAGCAGTAAGATTTTGGTTAAATTCTTTGAGCTAAATCCAATTTCCGTATATCGTTATTTCATGCTTTGGATTCTTTCCGATAGACCATATTCTTTTAAAATTAGTGGGCTAATCAAACTAGTTTTATTTGGTTTTTCAGTTCTACTTACTTAAATAGGATCTTTAACTTAATAGACAATGTGTATTTTCAATCCATTTTAATCTAGATTTTTGCAGAAATTGAGAAAGAGTAGGATATTGTATAATATTATGTTCTGGAATCTGAAATCAAGTGATAGTAACTCGGTGTGTACTTACTTCTTACCTTGGATTTGGGGATACTGGTCCCTTTTTTTCTCATATATCTTCATATAATATGCAGAAGTACTGTTTCATTTGAAATAATTATTTTATCTTCTGAGATCTATATATATTTTTACATTTGTTTCATATGGATTGGATTGGTATGATTCCAAACTTCAAGATCTAGAAAAAGTAGTTATGCACAGATATATAGACATTGGAATAACTAATTGTTCCCTCTTCTTCCCACACCTCACACATTTTCAATATCCATCAATGATACACACAGATCCTTGTCTCTTTGATATGCTTGTATTGTGTTACTTTTTTGTTCAATTGGTTGAATTATTATAGTGTTATGGAAATCATTATAGCAGCATGGCATGTTACATATGTGTAACATAAATAGATCATGCACATATATGAGCAAGGGCACACTTGAATATGGAGTTTGTATCTTAGTTTATACTACATCCGTCCTTAATAATTCATTTATACATATTCACCATAATAGTATTTATTTCTTACTTGTTTTTTTTCTTTCTAATAAACCGAACTAACCCACCAAAATTGACACTAGATATAATCGAATCTGAGAACCTGAGAGATATTATTAGGGATAAATGTGAATAAAAAAGTTTTACATAAAGGGATAAGCTATATTTTTTAAGATCTTTTATTTAGGAATTGATGGAGTATATAGTTTCATAGACCCTTTTCAATTATATGCCTTGCTCAAACTTTGTGGATGCATGTAGAGGTGATTTGTTTGGGAAAAAAAGAACAAGAGGATTAGAATTTCGTTCTCTCACCATAATATAATGGTGTTTCCAAAAGAAGACTACCTTTTAAACTACATTAATTATATAAGTATGAAGAATGAAAGAAATAATTAATAAATTAAAGGAATGAAACACTTTGAGTCTAAACTTGAACTGAGTGTTAGACTTAGACCGTAGAAGCAAAAAAGTACAAGCTTGGAGTTGGGACAACTGCCGTTGGCAGAGGAGTATAGTTGTATCAACACTTGGCAAACTACCTACTAGCTAGCTGCGGCCCCTTCAACGGTAATGCAATTCTCTGTATAGCTATGACTATGTGATGTAATTGTAATGCAACTACTCTAATGTTTATTTTGGGATATATTTATCCTCTAACAGTTACTACTTTTTTTTCTTCTTCTGGATTTGAATTCAACATATGATAACTTTAATTTTATTCTTGTTTAAATTTTATAGTGACAATATTTAATGAAAGTAATACAACATCTGCAAATAAAGTAGGTATTCGCAGTCATAAATGTGAGATAAAAGCTAATCGGAAGAAGATGAAAGTAAGCTGTTTTTCCATTCATTCTTCTCATAATGTTCTTGTTCCGTTATTTCACACTGTTCATTGTTTATCCATGTTGTATAAGGTTATATTCATTTTATGTATGAGTGATCTACTGAACCTGATTTTCTTAATACAGTTTTGGTACTTTGGTCTCAGGTAGACTGGATGCCAGAGCTGCACAAAAAAATTGTGAAGGCAGTGGAGCAACTAGGCATTGATCACGCTATTCCTTCTCGAATATTGGATCTAATGAAAGTGGAGGGCTTGACAAGGCGTAATGTGGCAAGCCATCTTCAGGTTATAATCTACCTTCCCACGGTTTCCAAAAGCTATTTCAATACCTCATTCAAAACTGTAATTAATGATAAATTGATATTCATATATTTTCATAGGTAATGCATACTAACATAAGGTCTTTTATTGTTTAAATTCAACCAGAAATATAGAATGCATAAGAGACATATCTTACCGAAGCAGGATGATCGGAAATGGCTAAATACAAGGTAG
Protein sequence

>MS.gene039630.t1

MEIPWIVDPTFFVFSLYMEALISYRINPVRVNVITKQRSCFLFESEPNLKKGTFGFQIGVVNKKKKFSPLIMAAAALVKVAQPGDLVIALHVLDTVTEGTSSLLSLMKTLDSVLAVYEGFCNLKQVDLKLNVCRGDSVRKLLVQEVKALGVSTVILGTSKSHHTIRSSAWVAKYCAKKLHKCVSVFAVDNGKIAFPKRSHCSSVKDCGSCSLREISDTEFNLGELLDYCEAENPLAMVPFQKRDDESVVGDESVVGDSKRMKPGCSLIRNVFHSKRHTAKSSPKIDDSALDGESGAIVPYGSAIILPPLTLCSDADSLPEELLILRDKYSSSCRLYSLQELVAATVNFSYASCGPFNGIRSHKCEIKANRKKMKVDWMPELHKKIVKAVEQLGIDHAIPSRILDLMKVEGLTRRNVASHLQKYRMHKRHILPKQDDRKWLNTR