Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039632.t1 | RHN65650.1 | 89.6 | 336 | 15 | 7 | 1 | 329 | 1 | 323 | 2.00E-131 | 478.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039632.t1 | Q9LJG8 | 37.3 | 102 | 60 | 1 | 43 | 140 | 82 | 183 | 1.1e-11 | 72.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039632.t1 | A0A396IK94 | 89.6 | 336 | 15 | 7 | 1 | 329 | 1 | 323 | 1.5e-131 | 478.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene039632.t1 | TF | Trihelix |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039632.t1 | MTR_3g014280 | 90.237 | 338 | 11 | 7 | 1 | 329 | 1 | 325 | 0.0 | 552 |
| MS.gene039632.t1 | MTR_1g037650 | 89.950 | 199 | 4 | 6 | 1 | 196 | 1 | 186 | 1.05e-110 | 320 |
| MS.gene039632.t1 | MTR_8g022290 | 25.234 | 321 | 164 | 11 | 26 | 309 | 52 | 333 | 9.47e-18 | 83.6 |
| MS.gene039632.t1 | MTR_2g016140 | 36.290 | 124 | 71 | 4 | 40 | 156 | 18 | 140 | 2.00e-16 | 79.0 |
| MS.gene039632.t1 | MTR_2g016140 | 36.290 | 124 | 71 | 4 | 40 | 156 | 18 | 140 | 3.22e-16 | 78.6 |
| MS.gene039632.t1 | MTR_1g061600 | 40.816 | 98 | 49 | 3 | 39 | 130 | 127 | 221 | 2.91e-15 | 76.6 |
| MS.gene039632.t1 | MTR_4g079960 | 34.653 | 101 | 58 | 2 | 41 | 133 | 27 | 127 | 2.43e-13 | 70.1 |
| MS.gene039632.t1 | MTR_4g079960 | 35.354 | 99 | 56 | 2 | 43 | 133 | 29 | 127 | 2.84e-13 | 69.7 |
| MS.gene039632.t1 | MTR_4g079960 | 35.354 | 99 | 56 | 2 | 43 | 133 | 29 | 127 | 3.74e-13 | 69.3 |
| MS.gene039632.t1 | MTR_5g017500 | 33.036 | 112 | 66 | 3 | 45 | 147 | 22 | 133 | 6.36e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039632.t1 | AT3G54390 | 59.386 | 293 | 89 | 6 | 38 | 328 | 31 | 295 | 3.71e-102 | 302 |
| MS.gene039632.t1 | AT3G54390 | 59.386 | 293 | 89 | 6 | 38 | 328 | 47 | 311 | 4.21e-102 | 303 |
| MS.gene039632.t1 | AT3G10030 | 42.000 | 100 | 51 | 2 | 33 | 127 | 149 | 246 | 1.48e-17 | 84.0 |
| MS.gene039632.t1 | AT3G10030 | 40.777 | 103 | 54 | 2 | 33 | 130 | 149 | 249 | 2.03e-17 | 83.2 |
| MS.gene039632.t1 | AT3G14180 | 35.772 | 123 | 67 | 2 | 30 | 140 | 61 | 183 | 4.54e-16 | 79.0 |
| MS.gene039632.t1 | AT3G58630 | 26.117 | 291 | 174 | 10 | 41 | 309 | 22 | 293 | 8.67e-15 | 74.3 |
| MS.gene039632.t1 | AT3G58630 | 26.117 | 291 | 174 | 10 | 41 | 309 | 22 | 293 | 1.20e-14 | 73.9 |
| MS.gene039632.t1 | AT3G24860 | 40.698 | 86 | 47 | 2 | 45 | 129 | 65 | 147 | 6.75e-14 | 71.6 |
| MS.gene039632.t1 | AT3G11100 | 43.333 | 90 | 49 | 2 | 41 | 130 | 18 | 105 | 8.56e-13 | 67.8 |
| MS.gene039632.t1 | AT2G44730 | 33.673 | 98 | 58 | 1 | 39 | 129 | 58 | 155 | 1.15e-11 | 65.5 |
Find 51 sgRNAs with CRISPR-Local
Find 98 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTTGGCCTTTGTATTCT+AGG | 0.121805 | 3.4:+10242506 | MS.gene039632:CDS |
| TTACACTGTGTTTGTGTCTT+TGG | 0.214518 | 3.4:-10242424 | None:intergenic |
| AAACAAAACAATATTATTAT+TGG | 0.217354 | 3.4:+10242226 | MS.gene039632:CDS |
| TTGAAGCATATGAATCAAAA+TGG | 0.232049 | 3.4:+10242314 | MS.gene039632:CDS |
| ATGGATTCTTGTTAGCTATA+TGG | 0.326116 | 3.4:-10244062 | None:intergenic |
| CAGCGCCGGCGTGCTGCTAT+CGG | 0.391787 | 3.4:-10244091 | None:intergenic |
| GTTGATTCATCATTGAGAAT+TGG | 0.394877 | 3.4:+10244408 | MS.gene039632:CDS |
| ATTATTATTGGTAGTGGAAG+TGG | 0.394946 | 3.4:+10242238 | MS.gene039632:CDS |
| AACAATATTATTATTGGTAG+TGG | 0.397415 | 3.4:+10242232 | MS.gene039632:CDS |
| ACTAAACAATAATCAAGGTT+TGG | 0.408425 | 3.4:+10242573 | MS.gene039632:CDS |
| CAAAACTCAAAGGACAAGAT+TGG | 0.436569 | 3.4:+10242353 | MS.gene039632:CDS |
| GGTGATTCTTGTTGTGATGT+TGG | 0.438336 | 3.4:-10242199 | None:intergenic |
| CAAAACTCACATGGATCAAA+TGG | 0.444369 | 3.4:+10242694 | MS.gene039632:CDS |
| CTAGTTCAGATGTTTCATCT+TGG | 0.449491 | 3.4:+10242491 | MS.gene039632:CDS |
| TGAGGCAAAGAGAGGAGAAA+TGG | 0.461965 | 3.4:+10244302 | MS.gene039632:CDS |
| GGTGGAGGAACAACCGTACT+AGG | 0.467128 | 3.4:-10242658 | None:intergenic |
| GGCTAGCAGAGGTGGTAGTA+AGG | 0.468988 | 3.4:+10244223 | MS.gene039632:CDS |
| GATCTTCTTCTACGTGGGAC+AGG | 0.487517 | 3.4:+10242532 | MS.gene039632:CDS |
| AAAACTCAAAGGACAAGATT+GGG | 0.491011 | 3.4:+10242354 | MS.gene039632:CDS |
| TGGGAATAGCAGAAAGCATA+AGG | 0.497144 | 3.4:+10244199 | MS.gene039632:CDS |
| TGAAGCATATGAATCAAAAT+GGG | 0.499206 | 3.4:+10242315 | MS.gene039632:CDS |
| ATTCTTGTTGTGATGTTGGA+GGG | 0.502379 | 3.4:-10242195 | None:intergenic |
| ATACACAACTTGAGATTGCT+AGG | 0.505134 | 3.4:+10244352 | MS.gene039632:CDS |
| GAGGCAAAAGAAAGAAACAA+TGG | 0.514233 | 3.4:+10244179 | MS.gene039632:CDS |
| TGAGCAGTTGTAATTGGTGG+AGG | 0.515009 | 3.4:-10242673 | None:intergenic |
| AGATTGAGTCCATGAAGAAA+AGG | 0.517431 | 3.4:+10242452 | MS.gene039632:CDS |
| GGCTTGATCTTCTTCTACGT+GGG | 0.522749 | 3.4:+10242527 | MS.gene039632:CDS |
| AAGGTCAGAACAAACAAGAA+TGG | 0.526165 | 3.4:+10244242 | MS.gene039632:CDS |
| AGGCAAAAGAAAGAAACAAT+GGG | 0.536131 | 3.4:+10244180 | MS.gene039632:CDS |
| TATAGCTAACAAGAATCCAT+TGG | 0.536715 | 3.4:+10244065 | MS.gene039632:CDS |
| CAGAAAACAATAACAACAAG+AGG | 0.538998 | 3.4:+10244160 | MS.gene039632:CDS |
| GATTCTTGTTGTGATGTTGG+AGG | 0.544639 | 3.4:-10242196 | None:intergenic |
| CATAAGGTGGCTAGCAGAGG+TGG | 0.548999 | 3.4:+10244215 | MS.gene039632:CDS |
| ATTCATCATTGAGAATTGGA+AGG | 0.555241 | 3.4:+10244412 | MS.gene039632:CDS |
| ACAACACTAAACAATAATCA+AGG | 0.555763 | 3.4:+10242568 | MS.gene039632:CDS |
| GAAGATGAGAGTTGAAGCTG+AGG | 0.581651 | 3.4:+10244284 | MS.gene039632:CDS |
| AAGCATAAGGTGGCTAGCAG+AGG | 0.587151 | 3.4:+10244212 | MS.gene039632:CDS |
| GTGCTGCTATCGGTTTCCAA+TGG | 0.590073 | 3.4:-10244081 | None:intergenic |
| AAAAGAGATGAATGGAGTGA+AGG | 0.593095 | 3.4:+10242274 | MS.gene039632:CDS |
| AGAAATAGAGCAAAACTCAA+AGG | 0.604235 | 3.4:+10242343 | MS.gene039632:CDS |
| GTTGAAGCTGAGGCAAAGAG+AGG | 0.612939 | 3.4:+10244294 | MS.gene039632:CDS |
| ACAACTGCTCAAAACTCACA+TGG | 0.614879 | 3.4:+10242685 | MS.gene039632:CDS |
| AGGCTTGATCTTCTTCTACG+TGG | 0.621912 | 3.4:+10242526 | MS.gene039632:CDS |
| TGGTGTTGATAAATTAGTCA+AGG | 0.628166 | 3.4:+10242714 | MS.gene039632:CDS |
| TCAGCCACTAGCTCCTAGTA+CGG | 0.644324 | 3.4:+10242645 | MS.gene039632:CDS |
| AGATCAAGCCTAGAATACAA+AGG | 0.658137 | 3.4:-10242514 | None:intergenic |
| GGAAACCGATAGCAGCACGC+CGG | 0.658154 | 3.4:+10244086 | MS.gene039632:CDS |
| ACAACCGTACTAGGAGCTAG+TGG | 0.669765 | 3.4:-10242649 | None:intergenic |
| GAATAGCAGAAAGCATAAGG+TGG | 0.715377 | 3.4:+10244202 | MS.gene039632:CDS |
| GCATGTGACATAACAAGTGG+TGG | 0.722377 | 3.4:-10242607 | None:intergenic |
| TGTGCATGTGACATAACAAG+TGG | 0.766342 | 3.4:-10242610 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATAAAAAAATAAAT+TGG | - | chr3.4:10243122-10243141 | None:intergenic | 0.0% |
| !! | AATAAAATAATTTATATATT+CGG | + | chr3.4:10243496-10243515 | MS.gene039632:intron | 0.0% |
| !!! | TAATTTTTTATTTTATTTTT+AGG | + | chr3.4:10242880-10242899 | MS.gene039632:intron | 0.0% |
| !! | AAACAAAACAATATTATTAT+TGG | + | chr3.4:10242226-10242245 | MS.gene039632:CDS | 10.0% |
| !! | ATAGACTTAAAAAAAAATTA+TGG | + | chr3.4:10242919-10242938 | MS.gene039632:intron | 10.0% |
| !!! | TTTAAATATTGATTGTATAA+AGG | + | chr3.4:10243781-10243800 | MS.gene039632:intron | 10.0% |
| !! | ATAATAATCAAATTGTTAAG+TGG | + | chr3.4:10243526-10243545 | MS.gene039632:intron | 15.0% |
| !! | GATAGTGAAATATATATAAT+TGG | - | chr3.4:10243919-10243938 | None:intergenic | 15.0% |
| !! | TAATAATCAAATTGTTAAGT+GGG | + | chr3.4:10243527-10243546 | MS.gene039632:intron | 15.0% |
| !! | TAGTATATGGTTAAAATAAA+TGG | - | chr3.4:10243614-10243633 | None:intergenic | 15.0% |
| !! | TTAATGCATATATAGTATAA+TGG | - | chr3.4:10243566-10243585 | None:intergenic | 15.0% |
| !! | TTGTTAAATATTAAAGTCAA+AGG | + | chr3.4:10243090-10243109 | MS.gene039632:intron | 15.0% |
| !!! | ATAATATTGTTTTGTTTTCT+TGG | - | chr3.4:10242223-10242242 | None:intergenic | 15.0% |
| !!! | ATTTATTTTAAAGAGTTTGA+TGG | + | chr3.4:10243337-10243356 | MS.gene039632:intron | 15.0% |
| !!! | TTTTTTTTCTTTTCTTTTGA+TGG | - | chr3.4:10243755-10243774 | None:intergenic | 15.0% |
| !! | AAAAAAATTAGTGCATATGT+TGG | + | chr3.4:10243649-10243668 | MS.gene039632:intron | 20.0% |
| !! | AAAAACAATGATCTTCATAT+AGG | - | chr3.4:10243247-10243266 | None:intergenic | 20.0% |
| !! | AACAATATTATTATTGGTAG+TGG | + | chr3.4:10242232-10242251 | MS.gene039632:CDS | 20.0% |
| !! | ATAGTAAACTCAAATATCTT+TGG | - | chr3.4:10243866-10243885 | None:intergenic | 20.0% |
| !! | ATTTATGATTTCATATTGAC+AGG | + | chr3.4:10244011-10244030 | MS.gene039632:intron | 20.0% |
| !! | TAAACATGCATAATAGTATA+TGG | - | chr3.4:10243627-10243646 | None:intergenic | 20.0% |
| !! | TAGTAAACTCAAATATCTTT+GGG | - | chr3.4:10243865-10243884 | None:intergenic | 20.0% |
| !! | TATAATCTAAAGAAAATGTG+AGG | + | chr3.4:10243306-10243325 | MS.gene039632:intron | 20.0% |
| !!! | AAGATCATTGTTTTTTTTGA+AGG | + | chr3.4:10243252-10243271 | MS.gene039632:intron | 20.0% |
| !!! | AGATCATTGTTTTTTTTGAA+GGG | + | chr3.4:10243253-10243272 | MS.gene039632:intron | 20.0% |
| !!! | AGTTTTATATGATTTTACCA+TGG | - | chr3.4:10243820-10243839 | None:intergenic | 20.0% |
| !!! | GTTTTATATGATTTTACCAT+GGG | - | chr3.4:10243819-10243838 | None:intergenic | 20.0% |
| !!! | TATTTTTAGGACAAAAAAGT+AGG | + | chr3.4:10242893-10242912 | MS.gene039632:intron | 20.0% |
| ! | AAAACTCACGACTAAAAATA+AGG | + | chr3.4:10243013-10243032 | MS.gene039632:intron | 25.0% |
| ! | ACAACACTAAACAATAATCA+AGG | + | chr3.4:10242568-10242587 | MS.gene039632:CDS | 25.0% |
| ! | ACTAAACAATAATCAAGGTT+TGG | + | chr3.4:10242573-10242592 | MS.gene039632:CDS | 25.0% |
| ! | ATTACAAAATTGCTTGTTCA+AGG | + | chr3.4:10242845-10242864 | MS.gene039632:intron | 25.0% |
| ! | TGAAGCATATGAATCAAAAT+GGG | + | chr3.4:10242315-10242334 | MS.gene039632:CDS | 25.0% |
| ! | TTGAAGCATATGAATCAAAA+TGG | + | chr3.4:10242314-10242333 | MS.gene039632:CDS | 25.0% |
| ! | TTTCACTCACATAATTAAGT+AGG | - | chr3.4:10243208-10243227 | None:intergenic | 25.0% |
| !! | AAGCAATTTTGTAATTTGGA+AGG | - | chr3.4:10242840-10242859 | None:intergenic | 25.0% |
| !! | GAACAAGCAATTTTGTAATT+TGG | - | chr3.4:10242844-10242863 | None:intergenic | 25.0% |
| !! | TGATTGTATAAAGGTACAAA+AGG | + | chr3.4:10243790-10243809 | MS.gene039632:intron | 25.0% |
| AAAACTCAAAGGACAAGATT+GGG | + | chr3.4:10242354-10242373 | MS.gene039632:CDS | 30.0% | |
| AGAAATAGAGCAAAACTCAA+AGG | + | chr3.4:10242343-10242362 | MS.gene039632:CDS | 30.0% | |
| AGAGACTAAAAAGAGATGAA+TGG | + | chr3.4:10242266-10242285 | MS.gene039632:CDS | 30.0% | |
| AGGCAAAAGAAAGAAACAAT+GGG | + | chr3.4:10244180-10244199 | MS.gene039632:CDS | 30.0% | |
| ATGGATTCTTGTTAGCTATA+TGG | - | chr3.4:10244065-10244084 | None:intergenic | 30.0% | |
| ATTCATCATTGAGAATTGGA+AGG | + | chr3.4:10244412-10244431 | MS.gene039632:CDS | 30.0% | |
| CAGAAAACAATAACAACAAG+AGG | + | chr3.4:10244160-10244179 | MS.gene039632:CDS | 30.0% | |
| GAATGCTGCTGAATAATTAT+TGG | + | chr3.4:10243710-10243729 | MS.gene039632:intron | 30.0% | |
| GCAATAAGAAAATCATTCGA+AGG | - | chr3.4:10243433-10243452 | None:intergenic | 30.0% | |
| TATAGCTAACAAGAATCCAT+TGG | + | chr3.4:10244065-10244084 | MS.gene039632:CDS | 30.0% | |
| ! | GTTGATTCATCATTGAGAAT+TGG | + | chr3.4:10244408-10244427 | MS.gene039632:CDS | 30.0% |
| ! | TGATCTATACCTTTTCTTCA+TGG | - | chr3.4:10242464-10242483 | None:intergenic | 30.0% |
| ! | TGGGAGAATGAATATTTTCA+TGG | - | chr3.4:10243846-10243865 | None:intergenic | 30.0% |
| !! | ATTATTATTGGTAGTGGAAG+TGG | + | chr3.4:10242238-10242257 | MS.gene039632:CDS | 30.0% |
| !! | TGGTGTTGATAAATTAGTCA+AGG | + | chr3.4:10242714-10242733 | MS.gene039632:CDS | 30.0% |
| !!! | TAATCAAGGTTTGGTTTTGT+TGG | + | chr3.4:10242582-10242601 | MS.gene039632:CDS | 30.0% |
| AAAAGAGATGAATGGAGTGA+AGG | + | chr3.4:10242274-10242293 | MS.gene039632:CDS | 35.0% | |
| AAGGTCAGAACAAACAAGAA+TGG | + | chr3.4:10244242-10244261 | MS.gene039632:CDS | 35.0% | |
| AGATCAAGCCTAGAATACAA+AGG | - | chr3.4:10242517-10242536 | None:intergenic | 35.0% | |
| AGATTGAGTCCATGAAGAAA+AGG | + | chr3.4:10242452-10242471 | MS.gene039632:CDS | 35.0% | |
| ATACACAACTTGAGATTGCT+AGG | + | chr3.4:10244352-10244371 | MS.gene039632:CDS | 35.0% | |
| CAAAACTCAAAGGACAAGAT+TGG | + | chr3.4:10242353-10242372 | MS.gene039632:CDS | 35.0% | |
| CAAAACTCACATGGATCAAA+TGG | + | chr3.4:10242694-10242713 | MS.gene039632:CDS | 35.0% | |
| CTAGTTCAGATGTTTCATCT+TGG | + | chr3.4:10242491-10242510 | MS.gene039632:CDS | 35.0% | |
| GAGGCAAAAGAAAGAAACAA+TGG | + | chr3.4:10244179-10244198 | MS.gene039632:CDS | 35.0% | |
| TTACACTGTGTTTGTGTCTT+TGG | - | chr3.4:10242427-10242446 | None:intergenic | 35.0% | |
| ! | ATTCTTGTTGTGATGTTGGA+GGG | - | chr3.4:10242198-10242217 | None:intergenic | 35.0% |
| ! | TTTTGAGCAGTTGTAATTGG+TGG | - | chr3.4:10242679-10242698 | None:intergenic | 35.0% |
| !!! | GAGTTTTGAGCAGTTGTAAT+TGG | - | chr3.4:10242682-10242701 | None:intergenic | 35.0% |
| AAGGTACAAAAGGTTTCCCA+TGG | + | chr3.4:10243800-10243819 | MS.gene039632:intron | 40.0% | |
| ACAACTGCTCAAAACTCACA+TGG | + | chr3.4:10242685-10242704 | MS.gene039632:CDS | 40.0% | |
| ACGAGCAAAGAAGCAAAAAG+AGG | + | chr3.4:10244127-10244146 | MS.gene039632:CDS | 40.0% | |
| AGTACCTTAGTGCGTTACTT+AGG | + | chr3.4:10243674-10243693 | MS.gene039632:intron | 40.0% | |
| TGTGCATGTGACATAACAAG+TGG | - | chr3.4:10242613-10242632 | None:intergenic | 40.0% | |
| TTGTCTCACTTGTCTAAGCA+AGG | - | chr3.4:10243460-10243479 | None:intergenic | 40.0% | |
| ! | CAAGTGAGACAATAACTTGC+AGG | + | chr3.4:10243468-10243487 | MS.gene039632:intron | 40.0% |
| ! | CATCTTGGCCTTTGTATTCT+AGG | + | chr3.4:10242506-10242525 | MS.gene039632:CDS | 40.0% |
| ! | GAATAGCAGAAAGCATAAGG+TGG | + | chr3.4:10244202-10244221 | MS.gene039632:CDS | 40.0% |
| ! | GATTCTTGTTGTGATGTTGG+AGG | - | chr3.4:10242199-10242218 | None:intergenic | 40.0% |
| ! | GGTGATTCTTGTTGTGATGT+TGG | - | chr3.4:10242202-10242221 | None:intergenic | 40.0% |
| ! | TGGGAATAGCAGAAAGCATA+AGG | + | chr3.4:10244199-10244218 | MS.gene039632:CDS | 40.0% |
| AGGCTTGATCTTCTTCTACG+TGG | + | chr3.4:10242526-10242545 | MS.gene039632:CDS | 45.0% | |
| GAAGATGAGAGTTGAAGCTG+AGG | + | chr3.4:10244284-10244303 | MS.gene039632:CDS | 45.0% | |
| GCATCCTAAGTAACGCACTA+AGG | - | chr3.4:10243681-10243700 | None:intergenic | 45.0% | |
| GCATGTGACATAACAAGTGG+TGG | - | chr3.4:10242610-10242629 | None:intergenic | 45.0% | |
| GGCTTGATCTTCTTCTACGT+GGG | + | chr3.4:10242527-10242546 | MS.gene039632:CDS | 45.0% | |
| TGAGCAGTTGTAATTGGTGG+AGG | - | chr3.4:10242676-10242695 | None:intergenic | 45.0% | |
| TGAGGCAAAGAGAGGAGAAA+TGG | + | chr3.4:10244302-10244321 | MS.gene039632:CDS | 45.0% | |
| AAGCATAAGGTGGCTAGCAG+AGG | + | chr3.4:10244212-10244231 | MS.gene039632:CDS | 50.0% | |
| ACAACCGTACTAGGAGCTAG+TGG | - | chr3.4:10242652-10242671 | None:intergenic | 50.0% | |
| GATCTTCTTCTACGTGGGAC+AGG | + | chr3.4:10242532-10242551 | MS.gene039632:CDS | 50.0% | |
| GTTGAAGCTGAGGCAAAGAG+AGG | + | chr3.4:10244294-10244313 | MS.gene039632:CDS | 50.0% | |
| TCAGCCACTAGCTCCTAGTA+CGG | + | chr3.4:10242645-10242664 | MS.gene039632:CDS | 50.0% | |
| !! | GTGCTGCTATCGGTTTCCAA+TGG | - | chr3.4:10244084-10244103 | None:intergenic | 50.0% |
| !! | TCTTTTTCGCTGTACAGCGC+CGG | - | chr3.4:10244108-10244127 | None:intergenic | 50.0% |
| CATAAGGTGGCTAGCAGAGG+TGG | + | chr3.4:10244215-10244234 | MS.gene039632:CDS | 55.0% | |
| GGCTAGCAGAGGTGGTAGTA+AGG | + | chr3.4:10244223-10244242 | MS.gene039632:CDS | 55.0% | |
| GGTGGAGGAACAACCGTACT+AGG | - | chr3.4:10242661-10242680 | None:intergenic | 55.0% | |
| GGAAACCGATAGCAGCACGC+CGG | + | chr3.4:10244086-10244105 | MS.gene039632:CDS | 60.0% | |
| !! | CAGCGCCGGCGTGCTGCTAT+CGG | - | chr3.4:10244094-10244113 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 10242154 | 10244440 | 10242154 | ID=MS.gene039632 |
| chr3.4 | mRNA | 10242154 | 10244440 | 10242154 | ID=MS.gene039632.t1;Parent=MS.gene039632 |
| chr3.4 | exon | 10242154 | 10242735 | 10242154 | ID=MS.gene039632.t1.exon1;Parent=MS.gene039632.t1 |
| chr3.4 | CDS | 10242154 | 10242735 | 10242154 | ID=cds.MS.gene039632.t1;Parent=MS.gene039632.t1 |
| chr3.4 | exon | 10244033 | 10244440 | 10244033 | ID=MS.gene039632.t1.exon2;Parent=MS.gene039632.t1 |
| chr3.4 | CDS | 10244033 | 10244440 | 10244033 | ID=cds.MS.gene039632.t1;Parent=MS.gene039632.t1 |
| Gene Sequence |
| Protein sequence |
