Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039655.t1 | XP_003598516.1 | 83.9 | 242 | 19 | 2 | 1 | 228 | 94 | 329 | 2.00E-109 | 405.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039655.t1 | Q9M2U4 | 46.8 | 173 | 67 | 4 | 29 | 197 | 31 | 182 | 8.1e-35 | 148.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039655.t1 | G7J0K6 | 83.9 | 242 | 19 | 2 | 1 | 228 | 94 | 329 | 1.4e-109 | 405.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene039655.t1 | TF | SRS |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039655.t1 | MTR_3g014660 | 90.909 | 242 | 2 | 2 | 1 | 228 | 94 | 329 | 1.97e-159 | 444 |
| MS.gene039655.t1 | MTR_8g039110 | 58.537 | 246 | 69 | 8 | 5 | 227 | 91 | 326 | 4.14e-84 | 253 |
| MS.gene039655.t1 | MTR_5g089750 | 52.071 | 169 | 71 | 2 | 41 | 200 | 249 | 416 | 6.75e-49 | 166 |
| MS.gene039655.t1 | MTR_8g076620 | 42.466 | 146 | 67 | 2 | 41 | 185 | 121 | 250 | 9.78e-36 | 129 |
| MS.gene039655.t1 | MTR_0363s0040 | 55.556 | 117 | 42 | 3 | 5 | 120 | 91 | 198 | 1.34e-35 | 126 |
| MS.gene039655.t1 | MTR_5g021130 | 43.506 | 154 | 80 | 3 | 41 | 187 | 100 | 253 | 1.47e-31 | 117 |
| MS.gene039655.t1 | MTR_3g112510 | 43.709 | 151 | 69 | 6 | 41 | 185 | 86 | 226 | 1.60e-28 | 109 |
| MS.gene039655.t1 | MTR_4g071110 | 36.667 | 150 | 71 | 3 | 41 | 190 | 17 | 142 | 4.38e-25 | 99.8 |
| MS.gene039655.t1 | MTR_1g023230 | 71.111 | 45 | 13 | 0 | 41 | 85 | 122 | 166 | 2.45e-17 | 78.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039655.t1 | AT5G12330 | 47.500 | 200 | 85 | 4 | 41 | 223 | 112 | 308 | 5.42e-50 | 166 |
| MS.gene039655.t1 | AT5G12330 | 47.500 | 200 | 85 | 4 | 41 | 223 | 112 | 308 | 5.42e-50 | 166 |
| MS.gene039655.t1 | AT5G12330 | 47.500 | 200 | 85 | 4 | 41 | 223 | 199 | 395 | 1.70e-49 | 167 |
| MS.gene039655.t1 | AT3G54430 | 47.059 | 170 | 71 | 4 | 29 | 197 | 31 | 182 | 8.41e-45 | 148 |
| MS.gene039655.t1 | AT5G66350 | 46.575 | 146 | 72 | 2 | 41 | 185 | 120 | 260 | 1.65e-39 | 139 |
| MS.gene039655.t1 | AT5G66350 | 46.575 | 146 | 72 | 2 | 41 | 185 | 120 | 260 | 2.02e-39 | 139 |
| MS.gene039655.t1 | AT5G66350 | 46.575 | 146 | 72 | 2 | 41 | 185 | 120 | 260 | 3.29e-39 | 138 |
| MS.gene039655.t1 | AT3G51060 | 47.222 | 144 | 70 | 4 | 41 | 183 | 144 | 282 | 1.65e-36 | 132 |
| MS.gene039655.t1 | AT1G19790 | 39.645 | 169 | 60 | 3 | 41 | 185 | 119 | 269 | 1.63e-34 | 126 |
| MS.gene039655.t1 | AT1G19790 | 39.645 | 169 | 60 | 3 | 41 | 185 | 119 | 269 | 1.63e-34 | 126 |
| MS.gene039655.t1 | AT1G75520 | 41.139 | 158 | 80 | 4 | 41 | 185 | 125 | 282 | 5.87e-34 | 124 |
| MS.gene039655.t1 | AT4G36260 | 48.344 | 151 | 72 | 3 | 41 | 185 | 94 | 244 | 1.36e-31 | 118 |
| MS.gene039655.t1 | AT2G21400 | 37.162 | 148 | 78 | 2 | 39 | 186 | 8 | 140 | 2.82e-31 | 114 |
| MS.gene039655.t1 | AT2G21400 | 37.162 | 148 | 78 | 2 | 39 | 186 | 7 | 139 | 3.23e-31 | 113 |
| MS.gene039655.t1 | AT2G18120 | 41.060 | 151 | 71 | 3 | 41 | 189 | 72 | 206 | 7.76e-31 | 113 |
| MS.gene039655.t1 | AT2G18120 | 40.132 | 152 | 73 | 2 | 41 | 189 | 72 | 208 | 2.58e-30 | 112 |
| MS.gene039655.t1 | AT2G21400 | 37.838 | 148 | 62 | 2 | 39 | 186 | 8 | 125 | 1.05e-29 | 109 |
| MS.gene039655.t1 | AT2G21400 | 37.838 | 148 | 62 | 2 | 39 | 186 | 7 | 124 | 1.10e-29 | 109 |
| MS.gene039655.t1 | AT5G12330 | 51.613 | 93 | 40 | 2 | 41 | 131 | 112 | 201 | 1.35e-21 | 89.7 |
| MS.gene039655.t1 | AT5G33210 | 39.516 | 124 | 65 | 4 | 41 | 164 | 52 | 165 | 2.52e-20 | 84.7 |
| MS.gene039655.t1 | AT5G33210 | 65.306 | 49 | 17 | 0 | 41 | 89 | 17 | 65 | 2.16e-19 | 80.5 |
Find 57 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTCAAGATTGTGGTAAT+AGG | 0.301923 | 3.4:-10930089 | MS.gene039655:CDS |
| TCTGGTGTTAAGAGACAAAA+AGG | 0.305575 | 3.4:-10929892 | MS.gene039655:CDS |
| TTTGGAAGATTCACTACTTC+AGG | 0.330560 | 3.4:+10930201 | None:intergenic |
| TTCATGCACCAGCTGTATTC+AGG | 0.332427 | 3.4:-10928863 | MS.gene039655:CDS |
| GCAGGGTAAGCATTATTGTT+TGG | 0.337600 | 3.4:+10928639 | None:intergenic |
| GGTGATGGTGAAGGTTGTTC+TGG | 0.358144 | 3.4:-10929910 | MS.gene039655:CDS |
| AAAGGGTTTCTTTATGATCA+TGG | 0.374071 | 3.4:-10928759 | MS.gene039655:CDS |
| CGGGAGGTGGAGATGTTTGC+CGG | 0.390512 | 3.4:-10929955 | MS.gene039655:CDS |
| CTTTATGATCATGGTGTTGA+TGG | 0.390879 | 3.4:-10928750 | MS.gene039655:CDS |
| AGAAGAGAATCATGGCAAAA+TGG | 0.391361 | 3.4:-10930160 | MS.gene039655:CDS |
| TGCCAATAGCAGTTACTCTA+TGG | 0.398017 | 3.4:+10928838 | None:intergenic |
| GTGGAGATGTTTGCCGGTGG+TGG | 0.398827 | 3.4:-10929949 | MS.gene039655:CDS |
| TTGTCAAGATTGTGGTAATA+GGG | 0.399150 | 3.4:-10930088 | MS.gene039655:CDS |
| GAGATGTTTGCCGGTGGTGG+TGG | 0.399774 | 3.4:-10929946 | MS.gene039655:CDS |
| ATGTTTGCCGGTGGTGGTGG+TGG | 0.402912 | 3.4:-10929943 | MS.gene039655:CDS |
| TTGTGTTTCAGAACTTCAAT+TGG | 0.409173 | 3.4:-10928712 | MS.gene039655:CDS |
| TTGGCCACAGTTCATATTAG+TGG | 0.413737 | 3.4:-10928792 | MS.gene039655:CDS |
| TTCGACACGTCGTCGGGAAC+GGG | 0.417355 | 3.4:-10929974 | MS.gene039655:CDS |
| TGAAGATGAATTTGCTTACT+TGG | 0.421514 | 3.4:-10928811 | MS.gene039655:CDS |
| TTTGCCGGTGGTGGTGGTGG+TGG | 0.424345 | 3.4:-10929940 | MS.gene039655:CDS |
| GTACTCATTTGAAGAGTACT+TGG | 0.429685 | 3.4:-10930002 | MS.gene039655:CDS |
| GGTGGTGGTGGTGATGGTGA+AGG | 0.434194 | 3.4:-10929919 | MS.gene039655:CDS |
| AAGATGTAGGACTTGTTGTA+AGG | 0.436244 | 3.4:-10930043 | MS.gene039655:CDS |
| CATGGCTAGCTAGCAGAAGC+AGG | 0.449543 | 3.4:+10928621 | None:intergenic |
| TGCCATAGAGTAACTGCTAT+TGG | 0.452645 | 3.4:-10928840 | MS.gene039655:CDS |
| GGTGAATGTTCTTCTGCAAT+TGG | 0.456180 | 3.4:-10928666 | MS.gene039655:CDS |
| GGTTTCAAAGAGGGTTTACC+AGG | 0.457703 | 3.4:-10928891 | MS.gene039655:CDS |
| TCTCATAGCTCTAACTCTAA+TGG | 0.458294 | 3.4:-10929835 | MS.gene039655:intron |
| TCATGGCAAAATGGCTATGA+TGG | 0.462755 | 3.4:-10930151 | MS.gene039655:CDS |
| GATTCCTTCGACACGTCGTC+GGG | 0.466088 | 3.4:-10929980 | MS.gene039655:CDS |
| ACGTCGTCGGGAACGGGAGG+TGG | 0.470316 | 3.4:-10929968 | MS.gene039655:CDS |
| AGTTCTGAAACACAAGGCAT+TGG | 0.476027 | 3.4:+10928720 | None:intergenic |
| AGTGAAGAAAATGGTGTGTA+TGG | 0.483753 | 3.4:-10930126 | MS.gene039655:CDS |
| TGTGTTTCAGAACTTCAATT+GGG | 0.498389 | 3.4:-10928711 | MS.gene039655:CDS |
| CTTCGACACGTCGTCGGGAA+CGG | 0.511061 | 3.4:-10929975 | MS.gene039655:CDS |
| TATAGAGTTTGTCAAGATTG+TGG | 0.512497 | 3.4:-10930096 | MS.gene039655:CDS |
| AATAATTGTAGTGGAAAGAA+TGG | 0.512653 | 3.4:-10928687 | MS.gene039655:CDS |
| ATGATGGAGAGTGAAGAAAA+TGG | 0.542008 | 3.4:-10930135 | MS.gene039655:CDS |
| GGATTCCTTCGACACGTCGT+CGG | 0.554911 | 3.4:-10929981 | MS.gene039655:CDS |
| GCAGATGCAGGTTTCAAAGA+GGG | 0.558109 | 3.4:-10928900 | MS.gene039655:intron |
| CTATGGCACCTGAATACAGC+TGG | 0.563710 | 3.4:+10928855 | None:intergenic |
| ATCACTGAAGAAGAGAATCA+TGG | 0.572196 | 3.4:-10930168 | MS.gene039655:CDS |
| AGAGTAACTGCTATTGGCAA+TGG | 0.579028 | 3.4:-10928834 | MS.gene039655:CDS |
| CAATTGGGAAATAATTGTAG+TGG | 0.580003 | 3.4:-10928696 | MS.gene039655:CDS |
| AGATGTAGGACTTGTTGTAA+GGG | 0.582676 | 3.4:-10930042 | MS.gene039655:CDS |
| AAAGAAACCCTTTGAAAACA+TGG | 0.590040 | 3.4:+10928769 | None:intergenic |
| CGTTCCCGACGACGTGTCGA+AGG | 0.590725 | 3.4:+10929976 | None:intergenic |
| TTTATGATCATGGTGTTGAT+GGG | 0.601430 | 3.4:-10928749 | MS.gene039655:CDS |
| ATTGTGTGTTTAGAAGATGT+AGG | 0.602227 | 3.4:-10930056 | MS.gene039655:CDS |
| TGCAGATGCAGGTTTCAAAG+AGG | 0.617800 | 3.4:-10928901 | MS.gene039655:intron |
| GACACGTCGTCGGGAACGGG+AGG | 0.631647 | 3.4:-10929971 | MS.gene039655:CDS |
| AGGACTTGTTGTAAGGGACG+TGG | 0.632558 | 3.4:-10930036 | MS.gene039655:CDS |
| ATGGCTAGCTAGCAGAAGCA+GGG | 0.656680 | 3.4:+10928622 | None:intergenic |
| GAGGTGGAGATGTTTGCCGG+TGG | 0.687056 | 3.4:-10929952 | MS.gene039655:CDS |
| GCTGGTGCATGAACATGACC+TGG | 0.691114 | 3.4:+10928873 | None:intergenic |
| ATGGCCACTAATATGAACTG+TGG | 0.704516 | 3.4:+10928788 | None:intergenic |
| AATTGAAGTTCTGAAACACA+AGG | 0.729820 | 3.4:+10928714 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATCAAATATAAAAAAAAA+AGG | + | chr3.4:10929400-10929419 | None:intergenic | 10.0% |
| !! | GAAAAAAAATGAAAAGAAAA+AGG | + | chr3.4:10929077-10929096 | None:intergenic | 15.0% |
| !! | GATAATAAATTACATCAATT+TGG | + | chr3.4:10929798-10929817 | None:intergenic | 15.0% |
| !! | TGAAATTATTATAACTGAAA+AGG | - | chr3.4:10929883-10929902 | MS.gene039655:CDS | 15.0% |
| !! | TTTAAATGTTTAGATTGAAA+AGG | - | chr3.4:10929108-10929127 | MS.gene039655:intron | 15.0% |
| !! | AAGTTAAAACATGAATTGTT+TGG | + | chr3.4:10929524-10929543 | None:intergenic | 20.0% |
| !! | ACTCTTATCATATCAATTTA+TGG | + | chr3.4:10929838-10929857 | None:intergenic | 20.0% |
| !! | TCAGTTATAATAATTTCATG+TGG | + | chr3.4:10929881-10929900 | None:intergenic | 20.0% |
| !!! | AACATTATTTTGTTCATTGA+TGG | - | chr3.4:10929444-10929463 | MS.gene039655:intron | 20.0% |
| ! | AAGAGACAAAAAGGTTTATT+AGG | - | chr3.4:10928950-10928969 | MS.gene039655:intron | 25.0% |
| ! | AATGAACAAAATAATGTTCC+CGG | + | chr3.4:10929442-10929461 | None:intergenic | 25.0% |
| ! | AGAGACAAAAAGGTTTATTA+GGG | - | chr3.4:10928951-10928970 | MS.gene039655:intron | 25.0% |
| ! | ATATTAGTATTGTATACACC+GGG | - | chr3.4:10929421-10929440 | MS.gene039655:intron | 25.0% |
| ! | CATATTAGTATTGTATACAC+CGG | - | chr3.4:10929420-10929439 | MS.gene039655:intron | 25.0% |
| ! | GTTTAGATTGAAAAGGAATT+TGG | - | chr3.4:10929115-10929134 | MS.gene039655:intron | 25.0% |
| !! | AATAATTGTAGTGGAAAGAA+TGG | - | chr3.4:10930146-10930165 | MS.gene039655:CDS | 25.0% |
| !!! | GTCAATTTGTCTTGTTTTAT+AGG | - | chr3.4:10929680-10929699 | MS.gene039655:intron | 25.0% |
| !!! | TATTTTGTTCATTGATGGAT+TGG | - | chr3.4:10929449-10929468 | MS.gene039655:intron | 25.0% |
| AAAGGGTTTCTTTATGATCA+TGG | - | chr3.4:10930074-10930093 | MS.gene039655:CDS | 30.0% | |
| ACACATAGACTATACATGTT+TGG | + | chr3.4:10929201-10929220 | None:intergenic | 30.0% | |
| ATTGTGTGTTTAGAAGATGT+AGG | - | chr3.4:10928777-10928796 | MS.gene039655:CDS | 30.0% | |
| CAATTGGGAAATAATTGTAG+TGG | - | chr3.4:10930137-10930156 | MS.gene039655:CDS | 30.0% | |
| GAGTAATTTGAGTGTAATTG+AGG | - | chr3.4:10929854-10929873 | MS.gene039655:CDS | 30.0% | |
| GGTTAATGGTCAAATATAGT+AGG | + | chr3.4:10929350-10929369 | None:intergenic | 30.0% | |
| GTAGTGAATCTTCCAAAAAA+AGG | - | chr3.4:10928638-10928657 | MS.gene039655:CDS | 30.0% | |
| TATAGAGTTTGTCAAGATTG+TGG | - | chr3.4:10928737-10928756 | MS.gene039655:CDS | 30.0% | |
| TGTGTTTCAGAACTTCAATT+GGG | - | chr3.4:10930122-10930141 | MS.gene039655:CDS | 30.0% | |
| TTGTCAAGATTGTGGTAATA+GGG | - | chr3.4:10928745-10928764 | MS.gene039655:CDS | 30.0% | |
| TTGTGTTTCAGAACTTCAAT+TGG | - | chr3.4:10930121-10930140 | MS.gene039655:CDS | 30.0% | |
| TTTGTCAAGATTGTGGTAAT+AGG | - | chr3.4:10928744-10928763 | MS.gene039655:CDS | 30.0% | |
| ! | AAAGAAACCCTTTGAAAACA+TGG | + | chr3.4:10930067-10930086 | None:intergenic | 30.0% |
| ! | TAGTATTTTCTCCTTCATCA+GGG | - | chr3.4:10929730-10929749 | MS.gene039655:intron | 30.0% |
| ! | TGAAGATGAATTTGCTTACT+TGG | - | chr3.4:10930022-10930041 | MS.gene039655:CDS | 30.0% |
| ! | TTAGTATTTTCTCCTTCATC+AGG | - | chr3.4:10929729-10929748 | MS.gene039655:intron | 30.0% |
| !! | AATTGAAGTTCTGAAACACA+AGG | + | chr3.4:10930122-10930141 | None:intergenic | 30.0% |
| !! | GTTTTGAGCTAAGGTTATAA+AGG | + | chr3.4:10929769-10929788 | None:intergenic | 30.0% |
| !! | TTTATGATCATGGTGTTGAT+GGG | - | chr3.4:10930084-10930103 | MS.gene039655:CDS | 30.0% |
| !!! | CTGCTTTTTGAAAATCAAGT+GGG | - | chr3.4:10929274-10929293 | MS.gene039655:intron | 30.0% |
| AAAATGTTAACGAGTGTCAG+GGG | + | chr3.4:10929377-10929396 | None:intergenic | 35.0% | |
| AGAAGAGAATCATGGCAAAA+TGG | - | chr3.4:10928673-10928692 | MS.gene039655:CDS | 35.0% | |
| AGTGAAGAAAATGGTGTGTA+TGG | - | chr3.4:10928707-10928726 | MS.gene039655:CDS | 35.0% | |
| ATCACTGAAGAAGAGAATCA+TGG | - | chr3.4:10928665-10928684 | MS.gene039655:CDS | 35.0% | |
| CATTTATGCAATCATGCTGT+TGG | - | chr3.4:10929475-10929494 | MS.gene039655:intron | 35.0% | |
| GAAAATGTTAACGAGTGTCA+GGG | + | chr3.4:10929378-10929397 | None:intergenic | 35.0% | |
| GTATAGTCTATGTGTATGTC+TGG | - | chr3.4:10929206-10929225 | MS.gene039655:intron | 35.0% | |
| TTTGGAAGATTCACTACTTC+AGG | + | chr3.4:10928635-10928654 | None:intergenic | 35.0% | |
| ! | ATGATGGAGAGTGAAGAAAA+TGG | - | chr3.4:10928698-10928717 | MS.gene039655:CDS | 35.0% |
| ! | ATTAGTGGCCATGTTTTCAA+AGG | - | chr3.4:10930056-10930075 | MS.gene039655:CDS | 35.0% |
| ! | CCACTTGATTTTCAAAAAGC+AGG | + | chr3.4:10929276-10929295 | None:intergenic | 35.0% |
| ! | CTTTATGATCATGGTGTTGA+TGG | - | chr3.4:10930083-10930102 | MS.gene039655:CDS | 35.0% |
| ! | TCTGGTGTTAAGAGACAAAA+AGG | - | chr3.4:10928941-10928960 | MS.gene039655:intron | 35.0% |
| ! | TTAGTGGCCATGTTTTCAAA+GGG | - | chr3.4:10930057-10930076 | MS.gene039655:CDS | 35.0% |
| !! | AAAAGGAAGTGAAAGTACCT+TGG | + | chr3.4:10929060-10929079 | None:intergenic | 35.0% |
| !! | AAGATGTAGGACTTGTTGTA+AGG | - | chr3.4:10928790-10928809 | MS.gene039655:CDS | 35.0% |
| !! | AGATGTAGGACTTGTTGTAA+GGG | - | chr3.4:10928791-10928810 | MS.gene039655:CDS | 35.0% |
| !! | GTACTCATTTGAAGAGTACT+TGG | - | chr3.4:10928831-10928850 | MS.gene039655:CDS | 35.0% |
| !! | TCTCATAGCTCTAACTCTAA+TGG | - | chr3.4:10928998-10929017 | MS.gene039655:intron | 35.0% |
| !!! | CCTGCTTTTTGAAAATCAAG+TGG | - | chr3.4:10929273-10929292 | MS.gene039655:intron | 35.0% |
| !!! | TCAGTGATCACTCCTTTTTT+TGG | + | chr3.4:10928653-10928672 | None:intergenic | 35.0% |
| !!! | TGGATAGTTGTTTTGAGCTA+AGG | + | chr3.4:10929778-10929797 | None:intergenic | 35.0% |
| AGAGTAACTGCTATTGGCAA+TGG | - | chr3.4:10929999-10930018 | MS.gene039655:CDS | 40.0% | |
| ATGGCCACTAATATGAACTG+TGG | + | chr3.4:10930048-10930067 | None:intergenic | 40.0% | |
| CTAATGATCGAGAATCGTTG+CGG | + | chr3.4:10929644-10929663 | None:intergenic | 40.0% | |
| GAGCTAAGGTTATAAAGGAC+CGG | + | chr3.4:10929764-10929783 | None:intergenic | 40.0% | |
| GAGCTAGTAGCAAAACTCTT+TGG | + | chr3.4:10929031-10929050 | None:intergenic | 40.0% | |
| GCAGGGTAAGCATTATTGTT+TGG | + | chr3.4:10930197-10930216 | None:intergenic | 40.0% | |
| GGAAAATGTTAACGAGTGTC+AGG | + | chr3.4:10929379-10929398 | None:intergenic | 40.0% | |
| GGTGAATGTTCTTCTGCAAT+TGG | - | chr3.4:10930167-10930186 | MS.gene039655:CDS | 40.0% | |
| TCATGGCAAAATGGCTATGA+TGG | - | chr3.4:10928682-10928701 | MS.gene039655:CDS | 40.0% | |
| TGCCAATAGCAGTTACTCTA+TGG | + | chr3.4:10929998-10930017 | None:intergenic | 40.0% | |
| TGCCATAGAGTAACTGCTAT+TGG | - | chr3.4:10929993-10930012 | MS.gene039655:CDS | 40.0% | |
| TTCTGTTGAATTGCAGATGC+AGG | - | chr3.4:10929921-10929940 | MS.gene039655:CDS | 40.0% | |
| TTGGCCACAGTTCATATTAG+TGG | - | chr3.4:10930041-10930060 | MS.gene039655:CDS | 40.0% | |
| !! | AGTTCTGAAACACAAGGCAT+TGG | + | chr3.4:10930116-10930135 | None:intergenic | 40.0% |
| CTACAGCTTCTGCAAAATCG+CGG | + | chr3.4:10929242-10929261 | None:intergenic | 45.0% | |
| CTTCATCAGGGTTTGAACTC+CGG | - | chr3.4:10929742-10929761 | MS.gene039655:intron | 45.0% | |
| GCAGATGCAGGTTTCAAAGA+GGG | - | chr3.4:10929933-10929952 | MS.gene039655:CDS | 45.0% | |
| GGTTTCAAAGAGGGTTTACC+AGG | - | chr3.4:10929942-10929961 | MS.gene039655:CDS | 45.0% | |
| TGCAGATGCAGGTTTCAAAG+AGG | - | chr3.4:10929932-10929951 | MS.gene039655:CDS | 45.0% | |
| TTCATGCACCAGCTGTATTC+AGG | - | chr3.4:10929970-10929989 | MS.gene039655:CDS | 45.0% | |
| CAGAAGCTGTAGAGTCTCGA+TGG | - | chr3.4:10929250-10929269 | MS.gene039655:intron | 50.0% | |
| CGGAGTTCAAACCCTGATGA+AGG | + | chr3.4:10929744-10929763 | None:intergenic | 50.0% | |
| CGTGTGACTATGTGAATGCG+TGG | - | chr3.4:10929609-10929628 | MS.gene039655:intron | 50.0% | |
| CTATGGCACCTGAATACAGC+TGG | + | chr3.4:10929981-10930000 | None:intergenic | 50.0% | |
| ! | GCTACTAGCTCTTGTCACCA+AGG | - | chr3.4:10929040-10929059 | MS.gene039655:intron | 50.0% |
| ! | GGTGATGGTGAAGGTTGTTC+TGG | - | chr3.4:10928923-10928942 | MS.gene039655:intron | 50.0% |
| !! | AGGACTTGTTGTAAGGGACG+TGG | - | chr3.4:10928797-10928816 | MS.gene039655:CDS | 50.0% |
| GATTCCTTCGACACGTCGTC+GGG | - | chr3.4:10928853-10928872 | MS.gene039655:CDS | 55.0% | |
| GCTGGTGCATGAACATGACC+TGG | + | chr3.4:10929963-10929982 | None:intergenic | 55.0% | |
| GGATTCCTTCGACACGTCGT+CGG | - | chr3.4:10928852-10928871 | MS.gene039655:CDS | 55.0% | |
| ! | TTAACGAGTGTCAGGGGCAC+TGG | + | chr3.4:10929371-10929390 | None:intergenic | 55.0% |
| !! | GTGTCAGGGGCACTGGTTAA+TGG | + | chr3.4:10929364-10929383 | None:intergenic | 55.0% |
| CGGGAGGTGGAGATGTTTGC+CGG | - | chr3.4:10928878-10928897 | MS.gene039655:CDS | 60.0% | |
| CTTCGACACGTCGTCGGGAA+CGG | - | chr3.4:10928858-10928877 | MS.gene039655:CDS | 60.0% | |
| GAGGTGGAGATGTTTGCCGG+TGG | - | chr3.4:10928881-10928900 | MS.gene039655:CDS | 60.0% | |
| GTGGAGATGTTTGCCGGTGG+TGG | - | chr3.4:10928884-10928903 | MS.gene039655:CDS | 60.0% | |
| TTCGACACGTCGTCGGGAAC+GGG | - | chr3.4:10928859-10928878 | MS.gene039655:CDS | 60.0% | |
| ! | GAGATGTTTGCCGGTGGTGG+TGG | - | chr3.4:10928887-10928906 | MS.gene039655:CDS | 60.0% |
| !! | ATGTTTGCCGGTGGTGGTGG+TGG | - | chr3.4:10928890-10928909 | MS.gene039655:CDS | 60.0% |
| !! | GGTGGTGGTGGTGATGGTGA+AGG | - | chr3.4:10928914-10928933 | MS.gene039655:intron | 60.0% |
| ACCACCACCACCACCACCAC+CGG | + | chr3.4:10928900-10928919 | None:intergenic | 65.0% | |
| CGTTCCCGACGACGTGTCGA+AGG | + | chr3.4:10928860-10928879 | None:intergenic | 65.0% | |
| !! | GGTGGTGGTGGTGGTGGTGA+TGG | - | chr3.4:10928908-10928927 | MS.gene039655:intron | 65.0% |
| !! | TTTGCCGGTGGTGGTGGTGG+TGG | - | chr3.4:10928893-10928912 | MS.gene039655:CDS | 65.0% |
| ACGTCGTCGGGAACGGGAGG+TGG | - | chr3.4:10928865-10928884 | MS.gene039655:CDS | 70.0% | |
| GACACGTCGTCGGGAACGGG+AGG | - | chr3.4:10928862-10928881 | MS.gene039655:CDS | 70.0% | |
| !! | GGTGGTGGTGGTGGTGGTGG+TGG | - | chr3.4:10928899-10928918 | MS.gene039655:CDS | 70.0% |
| !! | GCCGGTGGTGGTGGTGGTGG+TGG | - | chr3.4:10928896-10928915 | MS.gene039655:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 10928626 | 10930229 | 10928626 | ID=MS.gene039655 |
| chr3.4 | mRNA | 10928626 | 10930229 | 10928626 | ID=MS.gene039655.t1;Parent=MS.gene039655 |
| chr3.4 | exon | 10929836 | 10930229 | 10929836 | ID=MS.gene039655.t1.exon1;Parent=MS.gene039655.t1 |
| chr3.4 | CDS | 10929836 | 10930229 | 10929836 | ID=cds.MS.gene039655.t1;Parent=MS.gene039655.t1 |
| chr3.4 | exon | 10928626 | 10928918 | 10928626 | ID=MS.gene039655.t1.exon2;Parent=MS.gene039655.t1 |
| chr3.4 | CDS | 10928626 | 10928918 | 10928626 | ID=cds.MS.gene039655.t1;Parent=MS.gene039655.t1 |
| Gene Sequence |
| Protein sequence |
