Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039664.t1 | RHN65706.1 | 97.6 | 167 | 4 | 0 | 1 | 167 | 1 | 167 | 1.40E-83 | 318.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039664.t1 | O80366 | 65.2 | 161 | 54 | 2 | 2 | 160 | 7 | 167 | 1.5e-51 | 203.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039664.t1 | A0A396IJ66 | 97.6 | 167 | 4 | 0 | 1 | 167 | 1 | 167 | 9.9e-84 | 318.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene039664.t1 | TR | Others |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039664.t1 | MTR_3g015490 | 92.814 | 167 | 9 | 1 | 1 | 167 | 1 | 164 | 5.26e-110 | 310 |
| MS.gene039664.t1 | MTR_8g038620 | 74.545 | 165 | 41 | 1 | 3 | 167 | 8 | 171 | 1.57e-84 | 246 |
| MS.gene039664.t1 | MTR_7g490310 | 67.901 | 162 | 50 | 1 | 2 | 163 | 7 | 166 | 1.20e-77 | 231 |
| MS.gene039664.t1 | MTR_6g007460 | 55.224 | 201 | 28 | 3 | 3 | 150 | 10 | 201 | 1.97e-66 | 201 |
| MS.gene039664.t1 | MTR_3g088630 | 58.491 | 159 | 52 | 3 | 3 | 150 | 21 | 176 | 1.47e-58 | 182 |
| MS.gene039664.t1 | MTR_5g036480 | 56.643 | 143 | 57 | 1 | 3 | 145 | 15 | 152 | 5.21e-53 | 168 |
| MS.gene039664.t1 | MTR_3g078613 | 50.307 | 163 | 72 | 2 | 1 | 163 | 20 | 173 | 3.76e-51 | 162 |
| MS.gene039664.t1 | MTR_1g049100 | 55.696 | 158 | 58 | 4 | 3 | 159 | 7 | 153 | 4.98e-51 | 162 |
| MS.gene039664.t1 | MTR_4g106590 | 52.439 | 164 | 68 | 3 | 2 | 164 | 24 | 178 | 2.70e-50 | 160 |
| MS.gene039664.t1 | MTR_3g093860 | 55.634 | 142 | 46 | 3 | 5 | 141 | 19 | 148 | 4.12e-50 | 158 |
| MS.gene039664.t1 | MTR_3g078613 | 50.000 | 164 | 72 | 3 | 1 | 163 | 20 | 174 | 2.74e-49 | 158 |
| MS.gene039664.t1 | MTR_4g051330 | 98.701 | 77 | 1 | 0 | 91 | 167 | 77 | 153 | 1.25e-48 | 154 |
| MS.gene039664.t1 | MTR_4g061360 | 29.927 | 137 | 78 | 2 | 6 | 142 | 91 | 209 | 1.75e-14 | 70.5 |
| MS.gene039664.t1 | MTR_8g024260 | 27.143 | 140 | 84 | 1 | 6 | 145 | 38 | 159 | 1.78e-14 | 70.5 |
| MS.gene039664.t1 | MTR_1g067110 | 27.737 | 137 | 81 | 1 | 6 | 142 | 87 | 205 | 5.47e-13 | 66.2 |
| MS.gene039664.t1 | MTR_1g067110 | 27.737 | 137 | 81 | 1 | 6 | 142 | 87 | 205 | 7.39e-13 | 65.9 |
| MS.gene039664.t1 | MTR_3g092780 | 27.083 | 144 | 87 | 2 | 4 | 147 | 56 | 181 | 1.21e-12 | 65.1 |
| MS.gene039664.t1 | MTR_3g092780 | 27.083 | 144 | 87 | 2 | 4 | 147 | 56 | 181 | 1.21e-12 | 65.1 |
| MS.gene039664.t1 | MTR_3g092780 | 27.333 | 150 | 91 | 2 | 4 | 153 | 56 | 187 | 1.79e-12 | 64.7 |
| MS.gene039664.t1 | MTR_3g092780 | 27.333 | 150 | 91 | 2 | 4 | 153 | 56 | 187 | 1.81e-12 | 64.7 |
| MS.gene039664.t1 | MTR_7g118260 | 24.074 | 162 | 103 | 2 | 1 | 162 | 13 | 154 | 3.91e-12 | 63.5 |
| MS.gene039664.t1 | MTR_1g013180 | 28.671 | 143 | 81 | 3 | 6 | 148 | 162 | 283 | 2.75e-11 | 61.2 |
| MS.gene039664.t1 | MTR_1g032570 | 28.125 | 160 | 93 | 4 | 2 | 161 | 13 | 150 | 3.13e-11 | 61.2 |
| MS.gene039664.t1 | MTR_7g118260 | 25.352 | 142 | 86 | 2 | 1 | 142 | 13 | 134 | 3.96e-11 | 60.8 |
| MS.gene039664.t1 | MTR_8g079940 | 26.207 | 145 | 86 | 3 | 2 | 146 | 27 | 150 | 9.12e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039664.t1 | AT3G57040 | 69.799 | 149 | 42 | 2 | 2 | 148 | 7 | 154 | 2.91e-71 | 215 |
| MS.gene039664.t1 | AT3G57040 | 69.799 | 149 | 42 | 2 | 2 | 148 | 7 | 154 | 2.91e-71 | 215 |
| MS.gene039664.t1 | AT2G41310 | 64.430 | 149 | 52 | 1 | 2 | 150 | 7 | 154 | 4.62e-67 | 204 |
| MS.gene039664.t1 | AT1G59940 | 57.233 | 159 | 54 | 4 | 3 | 160 | 32 | 177 | 2.04e-56 | 177 |
| MS.gene039664.t1 | AT1G59940 | 57.962 | 157 | 52 | 4 | 3 | 158 | 124 | 267 | 1.46e-54 | 175 |
| MS.gene039664.t1 | AT1G10470 | 55.556 | 162 | 57 | 5 | 1 | 161 | 17 | 164 | 2.94e-54 | 172 |
| MS.gene039664.t1 | AT1G10470 | 56.250 | 160 | 55 | 5 | 3 | 161 | 33 | 178 | 3.83e-54 | 172 |
| MS.gene039664.t1 | AT3G56380 | 55.634 | 142 | 55 | 2 | 3 | 144 | 19 | 152 | 2.95e-52 | 164 |
| MS.gene039664.t1 | AT3G48100 | 52.500 | 160 | 67 | 3 | 4 | 163 | 25 | 175 | 3.41e-52 | 164 |
| MS.gene039664.t1 | AT2G40670 | 53.521 | 142 | 60 | 1 | 3 | 144 | 28 | 163 | 2.84e-51 | 162 |
| MS.gene039664.t1 | AT5G62920 | 57.447 | 141 | 51 | 2 | 4 | 144 | 25 | 156 | 9.96e-51 | 161 |
| MS.gene039664.t1 | AT3G56380 | 55.245 | 143 | 55 | 3 | 3 | 144 | 19 | 153 | 1.68e-50 | 159 |
| MS.gene039664.t1 | AT2G40670 | 53.147 | 143 | 60 | 2 | 3 | 144 | 28 | 164 | 2.07e-49 | 157 |
| MS.gene039664.t1 | AT1G19050 | 50.000 | 158 | 69 | 2 | 3 | 159 | 23 | 171 | 3.55e-49 | 157 |
| MS.gene039664.t1 | AT1G74890 | 50.625 | 160 | 68 | 2 | 3 | 160 | 17 | 167 | 7.13e-49 | 157 |
| MS.gene039664.t1 | AT2G07440 | 66.667 | 60 | 20 | 0 | 91 | 150 | 9 | 68 | 4.05e-22 | 86.7 |
| MS.gene039664.t1 | AT1G10470 | 52.857 | 70 | 27 | 2 | 90 | 158 | 35 | 99 | 2.17e-16 | 73.2 |
| MS.gene039664.t1 | AT5G24470 | 28.777 | 139 | 79 | 3 | 6 | 144 | 54 | 172 | 4.94e-13 | 66.2 |
| MS.gene039664.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 5.94e-12 | 63.2 |
| MS.gene039664.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 5.94e-12 | 63.2 |
| MS.gene039664.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 5.94e-12 | 63.2 |
| MS.gene039664.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 6.24e-12 | 63.2 |
| MS.gene039664.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 1.22e-11 | 62.4 |
| MS.gene039664.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 1.22e-11 | 62.4 |
| MS.gene039664.t1 | AT5G60100 | 28.467 | 137 | 80 | 1 | 6 | 142 | 66 | 184 | 1.22e-11 | 62.4 |
| MS.gene039664.t1 | AT2G46790 | 26.619 | 139 | 84 | 2 | 4 | 142 | 37 | 157 | 1.83e-11 | 61.6 |
| MS.gene039664.t1 | AT5G07210 | 30.000 | 140 | 76 | 3 | 5 | 144 | 17 | 134 | 2.04e-11 | 61.6 |
| MS.gene039664.t1 | AT2G46790 | 26.619 | 139 | 84 | 2 | 4 | 142 | 37 | 157 | 2.05e-11 | 61.6 |
| MS.gene039664.t1 | AT5G02810 | 26.277 | 137 | 83 | 2 | 6 | 142 | 80 | 198 | 3.53e-11 | 60.8 |
| MS.gene039664.t1 | AT2G25180 | 27.451 | 153 | 89 | 4 | 6 | 157 | 19 | 150 | 3.93e-11 | 60.8 |
Find 23 sgRNAs with CRISPR-Local
Find 82 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGGCACAGTTTCATATTT+TGG | 0.112277 | 3.4:+11204003 | None:intergenic |
| TCAGTTACTGTGGTTGATTC+TGG | 0.242120 | 3.4:+11204554 | MS.gene039664:intron |
| CTCAAAACCTCTTCATTTCA+TGG | 0.264136 | 3.4:+11204070 | MS.gene039664:CDS |
| GGCTTTGAAGTTTCTTGGTT+TGG | 0.274386 | 3.4:+11204583 | MS.gene039664:CDS |
| ACTAAGGCTTTGAAGTTTCT+TGG | 0.296459 | 3.4:+11204578 | MS.gene039664:CDS |
| TTCACATCTGATTGTTGAAC+TGG | 0.339226 | 3.4:-11205628 | None:intergenic |
| TGTGGTTGATTCTGGTACTA+AGG | 0.342411 | 3.4:+11204562 | MS.gene039664:CDS |
| AGATCATAGCCTGTCATTCC+TGG | 0.369947 | 3.4:-11204819 | None:intergenic |
| GTTTCTGCAGCAATAGTTTG+AGG | 0.420290 | 3.4:-11204632 | None:intergenic |
| ATGTTCCATCAAGGATCAAC+AGG | 0.450863 | 3.4:+11205451 | MS.gene039664:CDS |
| TACTGTATGCCAGGAATGAC+AGG | 0.454246 | 3.4:+11204810 | MS.gene039664:CDS |
| TGAATCAGATGCTTAGAAGA+AGG | 0.516221 | 3.4:+11205583 | MS.gene039664:intron |
| ATAACTGATTACTGTATGCC+AGG | 0.518630 | 3.4:+11204801 | MS.gene039664:CDS |
| ACCTAATCAACAACAAAAGA+AGG | 0.519626 | 3.4:+11205698 | MS.gene039664:CDS |
| TTGACAGAATGTTGATTGAA+AGG | 0.523765 | 3.4:+11204044 | MS.gene039664:CDS |
| AAAATTACCATGAAATGAAG+AGG | 0.534519 | 3.4:-11204077 | None:intergenic |
| TATTGCTGCAGAAACAGATC+AGG | 0.546049 | 3.4:+11204640 | MS.gene039664:CDS |
| TCTTGGTTTGGTTGAAGATG+AGG | 0.555035 | 3.4:+11204595 | MS.gene039664:CDS |
| CCTCAGAGAATGTTCCATCA+AGG | 0.587746 | 3.4:+11205442 | MS.gene039664:CDS |
| TCTGAGGACATAATCACCAC+TGG | 0.603381 | 3.4:-11205426 | None:intergenic |
| GTTTGGTTGAAGATGAGGTG+AGG | 0.669904 | 3.4:+11204600 | MS.gene039664:CDS |
| TTCTCTTAAAGACATACCAG+TGG | 0.694861 | 3.4:+11205410 | MS.gene039664:CDS |
| CCTTGATGGAACATTCTCTG+AGG | 0.696368 | 3.4:-11205442 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTTTATTAATGTTAAAAATT+TGG | + | chr3.4:11204715-11204734 | MS.gene039664:intron | 10.0% |
| !!! | CAAATTTTTAACATTAATAA+AGG | - | chr3.4:11204717-11204736 | None:intergenic | 10.0% |
| !!! | CTTAAAAATTTTAGAAAATA+TGG | + | chr3.4:11204275-11204294 | MS.gene039664:intron | 10.0% |
| !! | AAATTTCAAATTCAAAACTT+TGG | + | chr3.4:11205509-11205528 | MS.gene039664:intron | 15.0% |
| !! | ACAAAAATAATATGATTATG+TGG | + | chr3.4:11204330-11204349 | MS.gene039664:intron | 15.0% |
| !! | TATGAATACTATCAAAAAAT+TGG | - | chr3.4:11205316-11205335 | None:intergenic | 15.0% |
| !!! | AATTTTGAACGATTTTTTTT+TGG | + | chr3.4:11204375-11204394 | MS.gene039664:intron | 15.0% |
| !!! | ATTCAAATAATTTTGTGAAT+TGG | + | chr3.4:11204154-11204173 | MS.gene039664:intron | 15.0% |
| !!! | TATTTGAATTTTGATGTAAA+AGG | - | chr3.4:11204143-11204162 | None:intergenic | 15.0% |
| !! | AAAAATCAAGGTAAATTCAT+TGG | + | chr3.4:11204848-11204867 | MS.gene039664:intron | 20.0% |
| !! | AAAATCAAAAATTTGTGGTT+TGG | - | chr3.4:11205094-11205113 | None:intergenic | 20.0% |
| !! | AATGATTAGACTAATACATA+TGG | + | chr3.4:11204679-11204698 | MS.gene039664:intron | 20.0% |
| !! | GGTAATATGTAATGTTTATT+TGG | + | chr3.4:11204396-11204415 | MS.gene039664:intron | 20.0% |
| !!! | AAAACCACAATTTAAAATCT+TGG | - | chr3.4:11205059-11205078 | None:intergenic | 20.0% |
| !!! | AAATTTTGTAAAGAACAAAC+TGG | - | chr3.4:11204230-11204249 | None:intergenic | 20.0% |
| !!! | AGAAAATATATTTGATTTGC+AGG | + | chr3.4:11205380-11205399 | MS.gene039664:intron | 20.0% |
| !!! | ATGTATTAGTCTAATCATTT+AGG | - | chr3.4:11204678-11204697 | None:intergenic | 20.0% |
| !!! | TATTTGAAAATAGTTTGTGT+TGG | + | chr3.4:11204872-11204891 | MS.gene039664:intron | 20.0% |
| !!! | TTTTCTCTCATATTTTTTAG+AGG | + | chr3.4:11204099-11204118 | MS.gene039664:intron | 20.0% |
| ! | AAAATTACCATGAAATGAAG+AGG | - | chr3.4:11204080-11204099 | None:intergenic | 25.0% |
| ! | AGATTATAACTATCCCAATT+GGG | - | chr3.4:11205267-11205286 | None:intergenic | 25.0% |
| ! | TAGATTATAACTATCCCAAT+TGG | - | chr3.4:11205268-11205287 | None:intergenic | 25.0% |
| ! | TCACCAAAAAAGTAAAATTG+CGG | + | chr3.4:11205113-11205132 | MS.gene039664:intron | 25.0% |
| ! | TGCAAAAACAATTAACCAAA+AGG | - | chr3.4:11204759-11204778 | None:intergenic | 25.0% |
| ! | TGGTGAAAATCAAAAATTTG+TGG | - | chr3.4:11205099-11205118 | None:intergenic | 25.0% |
| ! | TTTCAAATTCAAAACTTTGG+AGG | + | chr3.4:11205512-11205531 | MS.gene039664:intron | 25.0% |
| !! | ATCATCAGAATTTGAAATGA+TGG | + | chr3.4:11204972-11204991 | MS.gene039664:intron | 25.0% |
| !! | ATGACCAAGATTTTAAATTG+TGG | + | chr3.4:11205052-11205071 | MS.gene039664:intron | 25.0% |
| !! | GTCTTGTCAATTTCAAATTT+TGG | + | chr3.4:11204949-11204968 | MS.gene039664:intron | 25.0% |
| !! | TCATCAGAATTTGAAATGAT+GGG | + | chr3.4:11204973-11204992 | MS.gene039664:intron | 25.0% |
| !! | TTTTGTAATTTCAGTTACTG+TGG | + | chr3.4:11204544-11204563 | MS.gene039664:intron | 25.0% |
| !!! | AAACCGCAATTTTACTTTTT+TGG | - | chr3.4:11205119-11205138 | None:intergenic | 25.0% |
| !!! | ATATGATTATGTGGTTTGTT+TGG | + | chr3.4:11204339-11204358 | MS.gene039664:intron | 25.0% |
| !!! | TTTTGGTTAATTGTTTTTGC+AGG | + | chr3.4:11204758-11204777 | MS.gene039664:intron | 25.0% |
| ACCTAATCAACAACAAAAGA+AGG | + | chr3.4:11205698-11205717 | MS.gene039664:CDS | 30.0% | |
| CTCGATTATATGCAATACTA+AGG | - | chr3.4:11205151-11205170 | None:intergenic | 30.0% | |
| GGATATCCAAAAAGGAAAAA+AGG | - | chr3.4:11205232-11205251 | None:intergenic | 30.0% | |
| TCTAAGCATCTGATTCAATA+AGG | - | chr3.4:11205580-11205599 | None:intergenic | 30.0% | |
| TGAAATTGACAAGACAATGA+TGG | - | chr3.4:11204944-11204963 | None:intergenic | 30.0% | |
| TGATGTTCCAAGTTATTACT+TGG | + | chr3.4:11204443-11204462 | MS.gene039664:intron | 30.0% | |
| ! | ACTTTTGTCTTCAACAAATG+TGG | - | chr3.4:11205664-11205683 | None:intergenic | 30.0% |
| ! | TTGACAGAATGTTGATTGAA+AGG | + | chr3.4:11204044-11204063 | MS.gene039664:CDS | 30.0% |
| ! | TTTGTGGTTTGGAAAAATCA+CGG | - | chr3.4:11205083-11205102 | None:intergenic | 30.0% |
| ! | TTTTTCCTTTTTGGATATCC+CGG | + | chr3.4:11205232-11205251 | MS.gene039664:intron | 30.0% |
| !! | GATGATGATGTTAATCCTTT+TGG | + | chr3.4:11204741-11204760 | MS.gene039664:intron | 30.0% |
| !!! | TCCTTCTTTTGTTGTTGATT+AGG | - | chr3.4:11205702-11205721 | None:intergenic | 30.0% |
| AACTTGGAACATCATCTCTA+AGG | - | chr3.4:11204437-11204456 | None:intergenic | 35.0% | |
| ATAACTGATTACTGTATGCC+AGG | + | chr3.4:11204801-11204820 | MS.gene039664:CDS | 35.0% | |
| CTCAAAACCTCTTCATTTCA+TGG | + | chr3.4:11204070-11204089 | MS.gene039664:CDS | 35.0% | |
| GTGTGTTCCAAGTAATAACT+TGG | - | chr3.4:11204453-11204472 | None:intergenic | 35.0% | |
| TGAATCAGATGCTTAGAAGA+AGG | + | chr3.4:11205583-11205602 | MS.gene039664:intron | 35.0% | |
| TGATCTGCTGAGAAAAATCA+AGG | + | chr3.4:11204836-11204855 | MS.gene039664:CDS | 35.0% | |
| TTCACATCTGATTGTTGAAC+TGG | - | chr3.4:11205631-11205650 | None:intergenic | 35.0% | |
| TTCTCTTAAAGACATACCAG+TGG | + | chr3.4:11205410-11205429 | MS.gene039664:CDS | 35.0% | |
| ! | ATCATCTCTAAGGATTTCCA+CGG | - | chr3.4:11204427-11204446 | None:intergenic | 35.0% |
| ! | CTTGTTGTCAATCAAAATCG+AGG | + | chr3.4:11205199-11205218 | MS.gene039664:intron | 35.0% |
| ! | TTTTACCTGTTGATCCTTGA+TGG | - | chr3.4:11205459-11205478 | None:intergenic | 35.0% |
| !! | ACTAAGGCTTTGAAGTTTCT+TGG | + | chr3.4:11204578-11204597 | MS.gene039664:CDS | 35.0% |
| !!! | CGTAGACCTTTTTTCCTTTT+TGG | + | chr3.4:11205223-11205242 | MS.gene039664:intron | 35.0% |
| !!! | CTCGATTTTGATTGACAACA+AGG | - | chr3.4:11205201-11205220 | None:intergenic | 35.0% |
| ATGTTCCATCAAGGATCAAC+AGG | + | chr3.4:11205451-11205470 | MS.gene039664:CDS | 40.0% | |
| CATAACCGGGATATCCAAAA+AGG | - | chr3.4:11205240-11205259 | None:intergenic | 40.0% | |
| GTTTCTGCAGCAATAGTTTG+AGG | - | chr3.4:11204635-11204654 | None:intergenic | 40.0% | |
| TATTGCTGCAGAAACAGATC+AGG | + | chr3.4:11204640-11204659 | MS.gene039664:CDS | 40.0% | |
| TGGAACACACTTCATACAGA+TGG | + | chr3.4:11204463-11204482 | MS.gene039664:intron | 40.0% | |
| ! | TCAGTTACTGTGGTTGATTC+TGG | + | chr3.4:11204554-11204573 | MS.gene039664:intron | 40.0% |
| ! | TGTGGTTGATTCTGGTACTA+AGG | + | chr3.4:11204562-11204581 | MS.gene039664:CDS | 40.0% |
| !! | GGCTTTGAAGTTTCTTGGTT+TGG | + | chr3.4:11204583-11204602 | MS.gene039664:CDS | 40.0% |
| !! | TCTTGGTTTGGTTGAAGATG+AGG | + | chr3.4:11204595-11204614 | MS.gene039664:CDS | 40.0% |
| AGATCATAGCCTGTCATTCC+TGG | - | chr3.4:11204822-11204841 | None:intergenic | 45.0% | |
| CCAATTGGGATGTCATAACC+GGG | - | chr3.4:11205253-11205272 | None:intergenic | 45.0% | |
| CCCAATTGGGATGTCATAAC+CGG | - | chr3.4:11205254-11205273 | None:intergenic | 45.0% | |
| CCGGTTATGACATCCCAATT+GGG | + | chr3.4:11205251-11205270 | MS.gene039664:intron | 45.0% | |
| CCTCAGAGAATGTTCCATCA+AGG | + | chr3.4:11205442-11205461 | MS.gene039664:CDS | 45.0% | |
| CCTTGATGGAACATTCTCTG+AGG | - | chr3.4:11205445-11205464 | None:intergenic | 45.0% | |
| GTTTGGTTGAAGATGAGGTG+AGG | + | chr3.4:11204600-11204619 | MS.gene039664:CDS | 45.0% | |
| TACTGTATGCCAGGAATGAC+AGG | + | chr3.4:11204810-11204829 | MS.gene039664:CDS | 45.0% | |
| TCTGAGGACATAATCACCAC+TGG | - | chr3.4:11205429-11205448 | None:intergenic | 45.0% | |
| ! | ATCTCTAAGGATTTCCACGG+CGG | - | chr3.4:11204424-11204443 | None:intergenic | 45.0% |
| ! | ATGTTTATTTGGAACCGCCG+TGG | + | chr3.4:11204407-11204426 | MS.gene039664:intron | 45.0% |
| !!! | AAATTTTTAACATTAATAAA+GGG | - | chr3.4:11204716-11204735 | None:intergenic | 5.0% |
| CCCGGTTATGACATCCCAAT+TGG | + | chr3.4:11205250-11205269 | MS.gene039664:intron | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 11204004 | 11205753 | 11204004 | ID=MS.gene039664 |
| chr3.4 | mRNA | 11204004 | 11205753 | 11204004 | ID=MS.gene039664.t1;Parent=MS.gene039664 |
| chr3.4 | exon | 11204004 | 11204091 | 11204004 | ID=MS.gene039664.t1.exon1;Parent=MS.gene039664.t1 |
| chr3.4 | CDS | 11204004 | 11204091 | 11204004 | ID=cds.MS.gene039664.t1;Parent=MS.gene039664.t1 |
| chr3.4 | exon | 11204558 | 11204661 | 11204558 | ID=MS.gene039664.t1.exon2;Parent=MS.gene039664.t1 |
| chr3.4 | CDS | 11204558 | 11204661 | 11204558 | ID=cds.MS.gene039664.t1;Parent=MS.gene039664.t1 |
| chr3.4 | exon | 11204780 | 11204857 | 11204780 | ID=MS.gene039664.t1.exon3;Parent=MS.gene039664.t1 |
| chr3.4 | CDS | 11204780 | 11204857 | 11204780 | ID=cds.MS.gene039664.t1;Parent=MS.gene039664.t1 |
| chr3.4 | exon | 11205402 | 11205472 | 11205402 | ID=MS.gene039664.t1.exon4;Parent=MS.gene039664.t1 |
| chr3.4 | CDS | 11205402 | 11205472 | 11205402 | ID=cds.MS.gene039664.t1;Parent=MS.gene039664.t1 |
| chr3.4 | exon | 11205591 | 11205753 | 11205591 | ID=MS.gene039664.t1.exon5;Parent=MS.gene039664.t1 |
| chr3.4 | CDS | 11205591 | 11205753 | 11205591 | ID=cds.MS.gene039664.t1;Parent=MS.gene039664.t1 |
| Gene Sequence |
| Protein sequence |
