AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039686


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039686.t1 MTR_2g084630 22.757 602 304 23 2 536 482 989 5.40e-24 107
MS.gene039686.t1 MTR_1g115215 30.935 139 89 3 400 537 871 1003 5.58e-16 82.0
MS.gene039686.t1 MTR_4g049500 28.758 153 105 2 388 539 753 902 2.19e-15 80.1
MS.gene039686.t1 MTR_1g044120 31.624 117 79 1 421 536 1004 1120 3.34e-14 76.3
MS.gene039686.t1 MTR_2g012830 30.147 136 94 1 407 541 1135 1270 5.31e-14 75.9
MS.gene039686.t1 MTR_7g089190 28.571 119 82 1 422 537 668 786 1.57e-11 67.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039686.t1 AT3G54460 62.134 581 162 9 1 541 752 1314 0.0 694
MS.gene039686.t1 AT3G54460 62.134 581 162 9 1 541 455 1017 0.0 694
MS.gene039686.t1 AT5G22750 22.613 597 307 17 4 536 491 996 2.23e-29 124
MS.gene039686.t1 AT1G11100 23.618 597 360 23 4 541 491 1050 1.24e-19 93.6
MS.gene039686.t1 AT1G11100 23.618 597 360 23 4 541 634 1193 1.33e-19 93.6
MS.gene039686.t1 AT1G50410 25.086 291 173 9 267 537 679 944 8.65e-16 81.3
MS.gene039686.t1 AT1G50410 25.086 291 173 9 267 537 679 944 8.65e-16 81.3
MS.gene039686.t1 AT1G50410 25.086 291 173 9 267 537 679 944 8.65e-16 81.3
MS.gene039686.t1 AT3G20010 24.101 278 190 6 267 539 485 746 1.79e-15 80.1
MS.gene039686.t1 AT1G02670 31.624 117 79 1 422 537 512 628 1.85e-15 80.1
MS.gene039686.t1 AT3G20010 24.101 278 190 6 267 539 751 1012 1.88e-15 80.5
MS.gene039686.t1 AT3G20010 24.101 278 190 6 267 539 751 1012 1.88e-15 80.5
MS.gene039686.t1 AT3G20010 24.101 278 190 6 267 539 751 1012 1.88e-15 80.5
MS.gene039686.t1 AT1G02670 31.624 117 79 1 422 537 539 655 1.89e-15 80.1
MS.gene039686.t1 AT3G20010 24.101 278 190 6 267 539 460 721 2.27e-15 79.7
MS.gene039686.t1 AT1G02670 31.624 117 79 1 422 537 516 632 3.84e-15 79.0
MS.gene039686.t1 AT1G02670 31.624 117 79 1 422 537 527 643 4.03e-15 79.0
MS.gene039686.t1 AT1G05120 30.252 119 82 1 422 539 682 800 5.82e-15 78.6
MS.gene039686.t1 AT1G05120 30.252 119 82 1 422 539 725 843 5.83e-15 78.6
MS.gene039686.t1 AT1G61140 23.843 281 187 7 267 541 828 1087 1.40e-14 77.8
MS.gene039686.t1 AT5G43530 29.927 137 95 1 401 536 1108 1244 1.47e-14 77.8
MS.gene039686.t1 AT1G61140 23.843 281 187 7 267 541 986 1245 1.78e-14 77.4
MS.gene039686.t1 AT1G11100 22.458 472 307 15 95 541 657 1094 2.46e-14 77.0
MS.gene039686.t1 AT1G11100 22.458 472 307 15 95 541 799 1236 3.09e-14 76.6
MS.gene039686.t1 AT1G11100 22.458 472 307 15 95 541 800 1237 3.37e-14 76.6
MS.gene039686.t1 AT1G02670 30.097 103 71 1 422 523 512 614 3.84e-12 69.3
MS.gene039686.t1 AT1G02670 30.097 103 71 1 422 523 539 641 4.10e-12 69.3
MS.gene039686.t1 AT5G63950 29.134 127 87 2 413 536 722 848 5.76e-11 66.2
MS.gene039686.t1 AT5G63950 29.134 127 87 2 413 536 739 865 6.04e-11 65.9

Find 125 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTGAATGAACAGGATAAT+TGG 0.223532 3.3:-10468926 MS.gene039686:intron
CTACGAAATTTCCATTGTTT+TGG 0.236191 3.3:+10469529 None:intergenic
GGTAGTTGTTCCAGCAAATT+TGG 0.283396 3.3:-10470210 MS.gene039686:CDS
CAGCAAATTTGGTCAATCAT+TGG 0.289054 3.3:-10470199 MS.gene039686:CDS
CATCTGCGCACTCGCTTGCC+TGG 0.292942 3.3:-10470106 MS.gene039686:CDS
CCAGAGGTTGAAAGCTTTGC+AGG 0.299028 3.3:-10468856 MS.gene039686:CDS
TTCCTTCATGAAGAAGCTTA+TGG 0.308034 3.3:-10469826 MS.gene039686:CDS
TCTGGCCGTGCCATTGAATC+AGG 0.311287 3.3:+10469097 None:intergenic
AATGGTCTAGATTCTACTTC+AGG 0.317795 3.3:-10469403 MS.gene039686:CDS
AGGCTTTCATGCTGTGTTGC+TGG 0.327727 3.3:-10469487 MS.gene039686:CDS
CAATGATTGACCAAATTTGC+TGG 0.331634 3.3:+10470200 None:intergenic
CTAGATGTTGATTGCCAATC+AGG 0.333695 3.3:+10468900 None:intergenic
TGTCAGGCCTGCTCAATTGC+AGG 0.356817 3.3:-10470156 MS.gene039686:CDS
ATTAATGGTATCAAATATAC+TGG 0.364522 3.3:-10468523 MS.gene039686:CDS
TAATGCTACTTGAACATTCC+TGG 0.371689 3.3:+10468736 None:intergenic
GTTGCAAATGACTATTTCAT+TGG 0.380919 3.3:-10469937 MS.gene039686:CDS
ATATGAACTCATCTCTTCAT+TGG 0.383511 3.3:+10468830 None:intergenic
CTTGGGGTACAAACCACTTT+GGG 0.384011 3.3:+10469065 None:intergenic
GCTAATGTTTCCACATGAAT+AGG 0.389546 3.3:+10467884 None:intergenic
TTGTAACTCAATAAGATCTT+GGG 0.390486 3.3:+10469048 None:intergenic
TCAAATCGGTGGATACTAAC+TGG 0.393580 3.3:-10469909 MS.gene039686:CDS
AAACAGGAGACTGTATCTTA+TGG 0.393932 3.3:+10469369 None:intergenic
GTTGTAACTCAATAAGATCT+TGG 0.398290 3.3:+10469047 None:intergenic
GTTGAATGAACAGGATAATT+GGG 0.403727 3.3:-10468925 MS.gene039686:intron
TGTTTGGTGGCCACTGTGTC+AGG 0.403966 3.3:-10469351 MS.gene039686:intron
CCTGCAAAGCTTTCAACCTC+TGG 0.408088 3.3:+10468856 None:intergenic
CCTTGTTGCTAGAATGCATT+GGG 0.411990 3.3:+10468491 None:intergenic
GGTACAAACCACTTTGGGTT+AGG 0.416889 3.3:+10469070 None:intergenic
AGATGTGTAAGTTGGCTGTT+AGG 0.423057 3.3:+10469865 None:intergenic
CCAGCACGATTCAAGTTGTA+TGG 0.427164 3.3:-10468322 MS.gene039686:CDS
TACAAATAGAAAAGCATGTC+AGG 0.427551 3.3:-10470172 MS.gene039686:CDS
TCATTCCGCATCATCATTCC+AGG 0.431472 3.3:-10468754 MS.gene039686:CDS
ACTTGAATCGTGCTGGAACT+TGG 0.432061 3.3:+10468329 None:intergenic
TATACATGTCATTGAACAAC+AGG 0.433121 3.3:-10468661 MS.gene039686:intron
TTGGAATGATCCTTCGCATA+TGG 0.445826 3.3:-10469566 MS.gene039686:CDS
TAGCCGTTTGAGTGCGGAGT+GGG 0.446474 3.3:-10470057 MS.gene039686:CDS
AGGATAATTGGGATCCTGAT+TGG 0.449928 3.3:-10468914 MS.gene039686:CDS
TTTCATTGGTTGCTTCAAAT+CGG 0.451100 3.3:-10469923 MS.gene039686:CDS
GATGGATGGGAGTGCTGCAT+TGG 0.453061 3.3:-10468292 MS.gene039686:CDS
ATCTGCGCACTCGCTTGCCT+GGG 0.456519 3.3:-10470105 MS.gene039686:CDS
ATAAGATACAGTCTCCTGTT+TGG 0.458193 3.3:-10469367 MS.gene039686:CDS
AATTTGCTGGAACAACTACC+AGG 0.463905 3.3:+10470213 None:intergenic
GTTAGGAGTGTTCGGTGTGT+TGG 0.464507 3.3:+10469882 None:intergenic
ATGGATGGGAGTGCTGCATT+GGG 0.465054 3.3:-10468291 MS.gene039686:CDS
CATGGGATGCTGGCGTGCTT+AGG 0.467040 3.3:-10469789 MS.gene039686:CDS
TGTACACTTGGTCTTGTCAA+TGG 0.468799 3.3:+10469156 None:intergenic
ATTTACCTTCTGTCCCAGAT+TGG 0.471541 3.3:+10468228 None:intergenic
TGTTCGGCGTAATATATTGA+TGG 0.471628 3.3:-10469593 MS.gene039686:CDS
TTTATGTTTGTAACGATCAT+CGG 0.474244 3.3:-10470133 MS.gene039686:CDS
TCTTGGGGTACAAACCACTT+TGG 0.483540 3.3:+10469064 None:intergenic
TGACACAGTGGCCACCAAAC+AGG 0.484233 3.3:+10469353 None:intergenic
GTCCATAAGCTTCTTCATGA+AGG 0.485696 3.3:+10469824 None:intergenic
ATGCATGATTAGTGCTAGAA+AGG 0.486577 3.3:-10469710 MS.gene039686:CDS
ATGGTCTAGATTCTACTTCA+GGG 0.489153 3.3:-10469402 MS.gene039686:CDS
ACACGCTGGAGAAGATATTC+AGG 0.491050 3.3:-10469449 MS.gene039686:CDS
AATTAGTCGTGCCCATCGTA+TGG 0.491970 3.3:-10467918 MS.gene039686:CDS
TGGCGTGCTTAGGCCATTCG+AGG 0.492502 3.3:-10469779 MS.gene039686:CDS
CAGGCAAGCGAGTGCGCAGA+TGG 0.495564 3.3:+10470107 None:intergenic
CACATCTACAACCGTTGCTA+AGG 0.499737 3.3:-10469849 MS.gene039686:CDS
ACCTTGTTGCTAGAATGCAT+TGG 0.503718 3.3:+10468490 None:intergenic
GTAATATATTGATGGCTGAT+TGG 0.511643 3.3:-10469585 MS.gene039686:CDS
GATGCAGAGTCCTGATTCAA+TGG 0.511929 3.3:-10469107 MS.gene039686:CDS
GGCCCCACTCCGCACTCAAA+CGG 0.512630 3.3:+10470054 None:intergenic
TCTTCCATCTCTGCCTCGAA+TGG 0.518095 3.3:+10469766 None:intergenic
TAATGAATTTCTTAGGTGCA+AGG 0.518160 3.3:-10469239 MS.gene039686:intron
AGCAGTGCCTGCGCATAAGA+AGG 0.521163 3.3:+10469025 None:intergenic
CCATACAACTTGAATCGTGC+TGG 0.522662 3.3:+10468322 None:intergenic
GTCGACATGGCGTAATGAAA+GGG 0.524194 3.3:+10469203 None:intergenic
AAGTTGTATGGCACTTCTGA+TGG 0.526598 3.3:-10468310 MS.gene039686:CDS
AGTTGGCTGTTAGGAGTGTT+CGG 0.531615 3.3:+10469874 None:intergenic
AAAACAACTTTCTTGATGCA+TGG 0.533458 3.3:+10469667 None:intergenic
TGTCGACATGGCGTAATGAA+AGG 0.537636 3.3:+10469202 None:intergenic
ATGAGTTGGTACTCACTGTT+CGG 0.540678 3.3:-10469609 MS.gene039686:CDS
CATTGGTTGCTTCAAATCGG+TGG 0.542676 3.3:-10469920 MS.gene039686:CDS
TTGTTAAACTAGATTTAGGA+TGG 0.548017 3.3:+10467788 None:intergenic
TTAGGTGCAAGGAATGGTGC+CGG 0.554256 3.3:-10469228 MS.gene039686:intron
TAGGCCATTCGAGGCAGAGA+TGG 0.555199 3.3:-10469770 MS.gene039686:CDS
CCCAATGCATTCTAGCAACA+AGG 0.557176 3.3:-10468491 MS.gene039686:intron
GTTACAACCTTCTTATGCGC+AGG 0.562566 3.3:-10469032 MS.gene039686:CDS
TACATTTAGCCGTTTGAGTG+CGG 0.563559 3.3:-10470063 MS.gene039686:CDS
GTCTACTGAATCCAAAACAA+TGG 0.568925 3.3:-10469540 MS.gene039686:CDS
AGATACAGTCTCCTGTTTGG+TGG 0.570067 3.3:-10469364 MS.gene039686:CDS
ACATAAACCTGCAATTGAGC+AGG 0.571518 3.3:+10470149 None:intergenic
TGGAGCCAATCTGGGACAGA+AGG 0.571632 3.3:-10468233 MS.gene039686:intron
GATGACAACATCATAATCCC+AGG 0.571751 3.3:+10470088 None:intergenic
TGTATGGCACTTCTGATGGA+TGG 0.572943 3.3:-10468306 MS.gene039686:CDS
CAGAAAATCCTAACCCAAAG+TGG 0.573856 3.3:-10469078 MS.gene039686:CDS
TGCGTCCCGTCCTATTCATG+TGG 0.574636 3.3:-10467894 MS.gene039686:CDS
TTCGAGGCAGAGATGGAAGA+AGG 0.574892 3.3:-10469763 MS.gene039686:CDS
AGGCAGAGATGGAAGAAGGT+TGG 0.579105 3.3:-10469759 MS.gene039686:CDS
ATTAGTCGTGCCCATCGTAT+GGG 0.583520 3.3:-10467917 MS.gene039686:CDS
AGAAGATATTCAGGAAACAA+TGG 0.583877 3.3:-10469440 MS.gene039686:CDS
TGTCAATGGAAACACAATCA+AGG 0.590521 3.3:+10469170 None:intergenic
GACGGGACGCACCCATACGA+TGG 0.591504 3.3:+10467906 None:intergenic
AGTAGACTTTCCATATGCGA+AGG 0.591925 3.3:+10469556 None:intergenic
TGTTTCCACATGAATAGGAC+GGG 0.593054 3.3:+10467889 None:intergenic
ATGGCGTAATGAAAGGGAGC+CGG 0.600819 3.3:+10469209 None:intergenic
TGCTAGAAGTTACAATGAGT+TGG 0.601484 3.3:-10469623 MS.gene039686:CDS
GTATGGCACTTCTGATGGAT+GGG 0.602911 3.3:-10468305 MS.gene039686:CDS
ATACATGTCAAGAGCAACCC+TGG 0.604114 3.3:-10470231 None:intergenic
AGCCGTTTGAGTGCGGAGTG+GGG 0.605704 3.3:-10470056 MS.gene039686:CDS
CAGAGGTTGAAAGCTTTGCA+GGG 0.610511 3.3:-10468855 MS.gene039686:CDS
AATTTCTTAGGTGCAAGGAA+TGG 0.610878 3.3:-10469234 MS.gene039686:intron
ACAACTTTCTTGATGCATGG+TGG 0.612301 3.3:+10469670 None:intergenic
ACGGGACGCACCCATACGAT+GGG 0.612774 3.3:+10467907 None:intergenic
CATATTAAAGTTACACACGC+TGG 0.624968 3.3:-10469463 MS.gene039686:CDS
ACAGCTAGGATATGTACACT+TGG 0.625444 3.3:+10469144 None:intergenic
ATGTTTCCACATGAATAGGA+CGG 0.627738 3.3:+10467888 None:intergenic
ACGGTTGTAGATGTGTAAGT+TGG 0.627824 3.3:+10469857 None:intergenic
TCATGAAGGAACCTTAGCAA+CGG 0.631882 3.3:+10469838 None:intergenic
CAGGAGACTGTATCTTATGG+AGG 0.634908 3.3:+10469372 None:intergenic
TGGTCTAGATTCTACTTCAG+GGG 0.641369 3.3:-10469401 MS.gene039686:CDS
AGAGTCCTGATTCAATGGCA+CGG 0.648352 3.3:-10469102 MS.gene039686:CDS
TCATACAAGTTATCACAGCT+AGG 0.648492 3.3:+10469130 None:intergenic
TGTAACTCAATAAGATCTTG+GGG 0.649776 3.3:+10469049 None:intergenic
GTGGAAACATTAGCTATGCG+TGG 0.666167 3.3:-10467875 MS.gene039686:CDS
AAACAATGGAAATTTCGTAG+TGG 0.666896 3.3:-10469526 MS.gene039686:CDS
GCGGAATGACTTGTGTGCAA+AGG 0.667601 3.3:+10468768 None:intergenic
TTAGCCGTTTGAGTGCGGAG+TGG 0.671278 3.3:-10470058 MS.gene039686:CDS
AGGCACAACATATGTCGACA+TGG 0.683756 3.3:+10469190 None:intergenic
AAGTTGCATATCTCGTCCAG+AGG 0.698811 3.3:-10468872 MS.gene039686:CDS
ATTTGCTGGAACAACTACCA+GGG 0.699718 3.3:+10470214 None:intergenic
ACATTCCTGGAATGATGATG+CGG 0.709579 3.3:+10468749 None:intergenic
AAGTAGCATTAGTACCAATG+TGG 0.718006 3.3:-10468724 MS.gene039686:CDS
AAGTATATTACCTGACACAG+TGG 0.731295 3.3:+10469341 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAATAGATTTACAAA+TGG + chr3.3:10469417-10469436 None:intergenic 10.0%
!!! TTTAATTTAATGAATTTCTT+AGG - chr3.3:10468783-10468802 MS.gene039686:CDS 10.0%
!!! AAAATATCAAAACTTTTTCA+GGG + chr3.3:10469332-10469351 None:intergenic 15.0%
!!! ATCTATTATATTTTATTCGT+TGG - chr3.3:10469424-10469443 MS.gene039686:CDS 15.0%
!!! TGAAAATATAAACTTACTTT+TGG - chr3.3:10469626-10469645 MS.gene039686:CDS 15.0%
!! ATTAATGGTATCAAATATAC+TGG - chr3.3:10469506-10469525 MS.gene039686:CDS 20.0%
!! GAGTTAGAAGAAAATTAAAT+CGG + chr3.3:10470059-10470078 None:intergenic 20.0%
!!! GAAAATATCAAAACTTTTTC+AGG + chr3.3:10469333-10469352 None:intergenic 20.0%
!!! GTGAAAATTTTAATTGAAGT+AGG + chr3.3:10470030-10470049 None:intergenic 20.0%
!!! TGTTACACATGTATTTTTAA+TGG - chr3.3:10469776-10469795 MS.gene039686:CDS 20.0%
!!! TGTTTTACTAGATTTTAATG+AGG - chr3.3:10468379-10468398 MS.gene039686:intron 20.0%
!!! TTAAATTTCTATTTTCCAGT+TGG - chr3.3:10469481-10469500 MS.gene039686:CDS 20.0%
!!! TTAGGATAATTTTAGATGAA+AGG - chr3.3:10468034-10468053 MS.gene039686:intron 20.0%
!!! TTTCATGTTGCTTTAATTTT+CGG - chr3.3:10468722-10468741 MS.gene039686:CDS 20.0%
! ATGGATATGTTAGTGAAAAA+TGG - chr3.3:10468608-10468627 MS.gene039686:intron 25.0%
! ATTACAACAGAATATGCAAA+TGG + chr3.3:10469450-10469469 None:intergenic 25.0%
! TTGTAACTCAATAAGATCTT+GGG + chr3.3:10468984-10469003 None:intergenic 25.0%
! TTTATGTTTGTAACGATCAT+CGG - chr3.3:10467896-10467915 MS.gene039686:CDS 25.0%
!!! ATTAAGCTGTTTTGCTTTAA+AGG - chr3.3:10469860-10469879 MS.gene039686:CDS 25.0%
!!! TACTTTTGGTTTCTAATCTT+TGG - chr3.3:10469640-10469659 MS.gene039686:CDS 25.0%
AAAACAACTTTCTTGATGCA+TGG + chr3.3:10468365-10468384 None:intergenic 30.0%
AAACAATGGAAATTTCGTAG+TGG - chr3.3:10468503-10468522 MS.gene039686:CDS 30.0%
AGAAGATATTCAGGAAACAA+TGG - chr3.3:10468589-10468608 MS.gene039686:intron 30.0%
ATATGAACTCATCTCTTCAT+TGG + chr3.3:10469202-10469221 None:intergenic 30.0%
ATCATCGTTTGCATATGAAT+CGG + chr3.3:10469835-10469854 None:intergenic 30.0%
GATTTACAAATGGTCACAAT+TGG + chr3.3:10469407-10469426 None:intergenic 30.0%
GTGGAGCTATAAAAAATGTA+AGG - chr3.3:10468522-10468541 MS.gene039686:CDS 30.0%
GTTGAATGAACAGGATAATT+GGG - chr3.3:10469104-10469123 MS.gene039686:CDS 30.0%
GTTGCAAATGACTATTTCAT+TGG - chr3.3:10468092-10468111 MS.gene039686:intron 30.0%
GTTGTAACTCAATAAGATCT+TGG + chr3.3:10468985-10469004 None:intergenic 30.0%
TAATGAATTTCTTAGGTGCA+AGG - chr3.3:10468790-10468809 MS.gene039686:CDS 30.0%
TATACATGTCATTGAACAAC+AGG - chr3.3:10469368-10469387 MS.gene039686:CDS 30.0%
TGGACTGAATCAAAAATCAT+GGG - chr3.3:10468223-10468242 MS.gene039686:intron 30.0%
TGTAACTCAATAAGATCTTG+GGG + chr3.3:10468983-10469002 None:intergenic 30.0%
TGTTGAATGAACAGGATAAT+TGG - chr3.3:10469103-10469122 MS.gene039686:CDS 30.0%
TTAAATAAAGCGACTGTTAG+TGG - chr3.3:10469973-10469992 MS.gene039686:intron 30.0%
! ATGGACTGAATCAAAAATCA+TGG - chr3.3:10468222-10468241 MS.gene039686:intron 30.0%
! ATTTTCCAGTTGGCTATTAA+TGG - chr3.3:10469491-10469510 MS.gene039686:CDS 30.0%
! ATTTTTAATGGAGCCAATCT+GGG - chr3.3:10469788-10469807 MS.gene039686:CDS 30.0%
! CTACGAAATTTCCATTGTTT+TGG + chr3.3:10468503-10468522 None:intergenic 30.0%
! GCAAATGCTAGAATTTTTAC+AGG - chr3.3:10470189-10470208 MS.gene039686:CDS 30.0%
! GTAATATATTGATGGCTGAT+TGG - chr3.3:10468444-10468463 MS.gene039686:intron 30.0%
! TACAAATAGAAAAGCATGTC+AGG - chr3.3:10467857-10467876 MS.gene039686:CDS 30.0%
! TCATTTGCAACTTGTTTGTT+AGG + chr3.3:10468083-10468102 None:intergenic 30.0%
! TTTCATTGGTTGCTTCAAAT+CGG - chr3.3:10468106-10468125 MS.gene039686:intron 30.0%
!! TATTTTTAATGGAGCCAATC+TGG - chr3.3:10469787-10469806 MS.gene039686:CDS 30.0%
!! TTGCTTTTGAATGTGTAAAC+TGG - chr3.3:10469940-10469959 MS.gene039686:intron 30.0%
AAACAGGAGACTGTATCTTA+TGG + chr3.3:10468663-10468682 None:intergenic 35.0%
AAGTAGCATTAGTACCAATG+TGG - chr3.3:10469305-10469324 MS.gene039686:intron 35.0%
AAGTATATTACCTGACACAG+TGG + chr3.3:10468691-10468710 None:intergenic 35.0%
AATCAAAAATCATGGGATGC+TGG - chr3.3:10468230-10468249 MS.gene039686:intron 35.0%
AATGGTCTAGATTCTACTTC+AGG - chr3.3:10468626-10468645 MS.gene039686:intron 35.0%
AATTTCTTAGGTGCAAGGAA+TGG - chr3.3:10468795-10468814 MS.gene039686:CDS 35.0%
ATAAGATACAGTCTCCTGTT+TGG - chr3.3:10468662-10468681 MS.gene039686:CDS 35.0%
ATGCATGATTAGTGCTAGAA+AGG - chr3.3:10468319-10468338 MS.gene039686:CDS 35.0%
ATGGTCTAGATTCTACTTCA+GGG - chr3.3:10468627-10468646 MS.gene039686:intron 35.0%
ATGTTTCCACATGAATAGGA+CGG + chr3.3:10470144-10470163 None:intergenic 35.0%
CAATGATTGACCAAATTTGC+TGG + chr3.3:10467832-10467851 None:intergenic 35.0%
CAGCAAATTTGGTCAATCAT+TGG - chr3.3:10467830-10467849 MS.gene039686:CDS 35.0%
CATATTAAAGTTACACACGC+TGG - chr3.3:10468566-10468585 MS.gene039686:intron 35.0%
GCTAATGTTTCCACATGAAT+AGG + chr3.3:10470148-10470167 None:intergenic 35.0%
GTCTACTGAATCCAAAACAA+TGG - chr3.3:10468489-10468508 MS.gene039686:intron 35.0%
GTTGTGATTGTTGAATGAAC+AGG - chr3.3:10469095-10469114 MS.gene039686:CDS 35.0%
TCATACAAGTTATCACAGCT+AGG + chr3.3:10468902-10468921 None:intergenic 35.0%
TGATACCATTAATAGCCAAC+TGG + chr3.3:10469499-10469518 None:intergenic 35.0%
TGCTAGAAGTTACAATGAGT+TGG - chr3.3:10468406-10468425 MS.gene039686:intron 35.0%
TGTCAATGGAAACACAATCA+AGG + chr3.3:10468862-10468881 None:intergenic 35.0%
TGTTCGGCGTAATATATTGA+TGG - chr3.3:10468436-10468455 MS.gene039686:intron 35.0%
TTCCTTCATGAAGAAGCTTA+TGG - chr3.3:10468203-10468222 MS.gene039686:intron 35.0%
! CGAGTAAAACCTTTTCAGTA+TGG - chr3.3:10470078-10470097 MS.gene039686:CDS 35.0%
! GTAAAACCTTTTCAGTATGG+AGG - chr3.3:10470081-10470100 MS.gene039686:CDS 35.0%
! TAATGCTACTTGAACATTCC+TGG + chr3.3:10469296-10469315 None:intergenic 35.0%
! TTAGATGAAAGGCATACTCT+TGG - chr3.3:10468045-10468064 MS.gene039686:intron 35.0%
! TTTAAAGGCGTAGGGATAAA+TGG - chr3.3:10469875-10469894 MS.gene039686:CDS 35.0%
!!! TGTTTTGCTTTAAAGGCGTA+GGG - chr3.3:10469867-10469886 MS.gene039686:CDS 35.0%
AAGTTGTATGGCACTTCTGA+TGG - chr3.3:10469719-10469738 MS.gene039686:CDS 40.0%
ACAACTTTCTTGATGCATGG+TGG + chr3.3:10468362-10468381 None:intergenic 40.0%
ACAGCTAGGATATGTACACT+TGG + chr3.3:10468888-10468907 None:intergenic 40.0%
ACATAAACCTGCAATTGAGC+AGG + chr3.3:10467883-10467902 None:intergenic 40.0%
ACCTTGTTGCTAGAATGCAT+TGG + chr3.3:10469542-10469561 None:intergenic 40.0%
ACGGTTGTAGATGTGTAAGT+TGG + chr3.3:10468175-10468194 None:intergenic 40.0%
AGGATAATTGGGATCCTGAT+TGG - chr3.3:10469115-10469134 MS.gene039686:CDS 40.0%
AGTAGACTTTCCATATGCGA+AGG + chr3.3:10468476-10468495 None:intergenic 40.0%
ATTTACCTTCTGTCCCAGAT+TGG + chr3.3:10469804-10469823 None:intergenic 40.0%
CAGAAAATCCTAACCCAAAG+TGG - chr3.3:10468951-10468970 MS.gene039686:intron 40.0%
CCTTGTTGCTAGAATGCATT+GGG + chr3.3:10469541-10469560 None:intergenic 40.0%
GATGACAACATCATAATCCC+AGG + chr3.3:10467944-10467963 None:intergenic 40.0%
GGTAGTTGTTCCAGCAAATT+TGG - chr3.3:10467819-10467838 MS.gene039686:CDS 40.0%
GTCCATAAGCTTCTTCATGA+AGG + chr3.3:10468208-10468227 None:intergenic 40.0%
TACATTTAGCCGTTTGAGTG+CGG - chr3.3:10467966-10467985 MS.gene039686:intron 40.0%
TCAAATCGGTGGATACTAAC+TGG - chr3.3:10468120-10468139 MS.gene039686:intron 40.0%
TCATGAAGGAACCTTAGCAA+CGG + chr3.3:10468194-10468213 None:intergenic 40.0%
TGGTCTAGATTCTACTTCAG+GGG - chr3.3:10468628-10468647 MS.gene039686:intron 40.0%
TGTTTCCACATGAATAGGAC+GGG + chr3.3:10470143-10470162 None:intergenic 40.0%
TTGGAATGATCCTTCGCATA+TGG - chr3.3:10468463-10468482 MS.gene039686:intron 40.0%
! ACATTCCTGGAATGATGATG+CGG + chr3.3:10469283-10469302 None:intergenic 40.0%
! AGATGTGTAAGTTGGCTGTT+AGG + chr3.3:10468167-10468186 None:intergenic 40.0%
! ATTTGCTGGAACAACTACCA+GGG + chr3.3:10467818-10467837 None:intergenic 40.0%
! CTAGATGTTGATTGCCAATC+AGG + chr3.3:10469132-10469151 None:intergenic 40.0%
!! AATTTGCTGGAACAACTACC+AGG + chr3.3:10467819-10467838 None:intergenic 40.0%
!! ATGAGTTGGTACTCACTGTT+CGG - chr3.3:10468420-10468439 MS.gene039686:intron 40.0%
!! CACTTTGGGTTAGGATTTTC+TGG + chr3.3:10468953-10468972 None:intergenic 40.0%
!! TGTACACTTGGTCTTGTCAA+TGG + chr3.3:10468876-10468895 None:intergenic 40.0%
!!! AACTTTTTCAGGGACCACAT+TGG + chr3.3:10469322-10469341 None:intergenic 40.0%
!!! CTGTTTTGCTTTAAAGGCGT+AGG - chr3.3:10469866-10469885 MS.gene039686:CDS 40.0%
AAACCAGCGCACTTGCATTA+GGG + chr3.3:10468016-10468035 None:intergenic 45.0%
AAGTTGCATATCTCGTCCAG+AGG - chr3.3:10469157-10469176 MS.gene039686:CDS 45.0%
AATTAGTCGTGCCCATCGTA+TGG - chr3.3:10470111-10470130 MS.gene039686:CDS 45.0%
ACACGCTGGAGAAGATATTC+AGG - chr3.3:10468580-10468599 MS.gene039686:intron 45.0%
ACTTGAATCGTGCTGGAACT+TGG + chr3.3:10469703-10469722 None:intergenic 45.0%
AGAGTCCTGATTCAATGGCA+CGG - chr3.3:10468927-10468946 MS.gene039686:intron 45.0%
AGATACAGTCTCCTGTTTGG+TGG - chr3.3:10468665-10468684 MS.gene039686:CDS 45.0%
AGGCACAACATATGTCGACA+TGG + chr3.3:10468842-10468861 None:intergenic 45.0%
ATTAGGGCAGTCTTCTTACG+TGG + chr3.3:10468000-10468019 None:intergenic 45.0%
ATTAGTCGTGCCCATCGTAT+GGG - chr3.3:10470112-10470131 MS.gene039686:CDS 45.0%
CACATCTACAACCGTTGCTA+AGG - chr3.3:10468180-10468199 MS.gene039686:intron 45.0%
CAGAGGTTGAAAGCTTTGCA+GGG - chr3.3:10469174-10469193 MS.gene039686:CDS 45.0%
CAGGAGACTGTATCTTATGG+AGG + chr3.3:10468660-10468679 None:intergenic 45.0%
CCATACAACTTGAATCGTGC+TGG + chr3.3:10469710-10469729 None:intergenic 45.0%
CCCAATGCATTCTAGCAACA+AGG - chr3.3:10469538-10469557 MS.gene039686:CDS 45.0%
CTTGCTCCTCCATACTGAAA+AGG + chr3.3:10470090-10470109 None:intergenic 45.0%
CTTGGGGTACAAACCACTTT+GGG + chr3.3:10468967-10468986 None:intergenic 45.0%
GATCCTCTGTTTGCCCAATT+TGG - chr3.3:10469995-10470014 MS.gene039686:intron 45.0%
GATGCAGAGTCCTGATTCAA+TGG - chr3.3:10468922-10468941 MS.gene039686:intron 45.0%
GTCGACATGGCGTAATGAAA+GGG + chr3.3:10468829-10468848 None:intergenic 45.0%
GTGGAAACATTAGCTATGCG+TGG - chr3.3:10470154-10470173 MS.gene039686:CDS 45.0%
GTTACAACCTTCTTATGCGC+AGG - chr3.3:10468997-10469016 MS.gene039686:intron 45.0%
TAAACCAGCGCACTTGCATT+AGG + chr3.3:10468017-10468036 None:intergenic 45.0%
TAGGAGCCATCCACCAAATT+GGG + chr3.3:10470011-10470030 None:intergenic 45.0%
TCATTCCGCATCATCATTCC+AGG - chr3.3:10469275-10469294 MS.gene039686:intron 45.0%
TCTTGGGGTACAAACCACTT+TGG + chr3.3:10468968-10468987 None:intergenic 45.0%
TGTATGGCACTTCTGATGGA+TGG - chr3.3:10469723-10469742 MS.gene039686:CDS 45.0%
TGTCGACATGGCGTAATGAA+AGG + chr3.3:10468830-10468849 None:intergenic 45.0%
TTAGGGCAGTCTTCTTACGT+GGG + chr3.3:10467999-10468018 None:intergenic 45.0%
! CATTGGTTGCTTCAAATCGG+TGG - chr3.3:10468109-10468128 MS.gene039686:intron 45.0%
! GCAACTTGTTTGTTAGGCTC+AGG + chr3.3:10468077-10468096 None:intergenic 45.0%
! GGTACAAACCACTTTGGGTT+AGG + chr3.3:10468962-10468981 None:intergenic 45.0%
! GTATGGCACTTCTGATGGAT+GGG - chr3.3:10469724-10469743 MS.gene039686:CDS 45.0%
! TGTTTGCCCAATTTGGTGGA+TGG - chr3.3:10470002-10470021 MS.gene039686:intron 45.0%
!! AGTTGGCTGTTAGGAGTGTT+CGG + chr3.3:10468158-10468177 None:intergenic 45.0%
!! CCAGCACGATTCAAGTTGTA+TGG - chr3.3:10469707-10469726 MS.gene039686:CDS 45.0%
!! TAATGCAAGTGCGCTGGTTT+AGG - chr3.3:10468016-10468035 MS.gene039686:intron 45.0%
AGGCAGAGATGGAAGAAGGT+TGG - chr3.3:10468270-10468289 MS.gene039686:CDS 50.0%
AGGCTTTCATGCTGTGTTGC+TGG - chr3.3:10468542-10468561 MS.gene039686:intron 50.0%
ATGGCGTAATGAAAGGGAGC+CGG + chr3.3:10468823-10468842 None:intergenic 50.0%
CCACCAAATTGGGCAAACAG+AGG + chr3.3:10470001-10470020 None:intergenic 50.0%
CCAGAGGTTGAAAGCTTTGC+AGG - chr3.3:10469173-10469192 MS.gene039686:CDS 50.0%
CCTCTGTTTGCCCAATTTGG+TGG - chr3.3:10469998-10470017 MS.gene039686:intron 50.0%
CCTGCAAAGCTTTCAACCTC+TGG + chr3.3:10469176-10469195 None:intergenic 50.0%
GTAGGAGCCATCCACCAAAT+TGG + chr3.3:10470012-10470031 None:intergenic 50.0%
TCTTCCATCTCTGCCTCGAA+TGG + chr3.3:10468266-10468285 None:intergenic 50.0%
TTAGGTGCAAGGAATGGTGC+CGG - chr3.3:10468801-10468820 MS.gene039686:CDS 50.0%
TTCGAGGCAGAGATGGAAGA+AGG - chr3.3:10468266-10468285 MS.gene039686:CDS 50.0%
! GCGGAATGACTTGTGTGCAA+AGG + chr3.3:10469264-10469283 None:intergenic 50.0%
!! ATGGATGGGAGTGCTGCATT+GGG - chr3.3:10469738-10469757 MS.gene039686:CDS 50.0%
!! GTTAGGAGTGTTCGGTGTGT+TGG + chr3.3:10468150-10468169 None:intergenic 50.0%
AGCAGTGCCTGCGCATAAGA+AGG + chr3.3:10469007-10469026 None:intergenic 55.0%
TAGCCGTTTGAGTGCGGAGT+GGG - chr3.3:10467972-10467991 MS.gene039686:intron 55.0%
TAGGCCATTCGAGGCAGAGA+TGG - chr3.3:10468259-10468278 MS.gene039686:CDS 55.0%
TGACACAGTGGCCACCAAAC+AGG + chr3.3:10468679-10468698 None:intergenic 55.0%
TGCGTCCCGTCCTATTCATG+TGG - chr3.3:10470135-10470154 MS.gene039686:CDS 55.0%
TGTCAGGCCTGCTCAATTGC+AGG - chr3.3:10467873-10467892 MS.gene039686:CDS 55.0%
TTAGCCGTTTGAGTGCGGAG+TGG - chr3.3:10467971-10467990 MS.gene039686:intron 55.0%
! TCTGGCCGTGCCATTGAATC+AGG + chr3.3:10468935-10468954 None:intergenic 55.0%
! TGGAGCCAATCTGGGACAGA+AGG - chr3.3:10469796-10469815 MS.gene039686:CDS 55.0%
! TGTTTGGTGGCCACTGTGTC+AGG - chr3.3:10468678-10468697 MS.gene039686:CDS 55.0%
!! GATGGATGGGAGTGCTGCAT+TGG - chr3.3:10469737-10469756 MS.gene039686:CDS 55.0%
ACGGGACGCACCCATACGAT+GGG + chr3.3:10470125-10470144 None:intergenic 60.0%
AGCCGTTTGAGTGCGGAGTG+GGG - chr3.3:10467973-10467992 MS.gene039686:intron 60.0%
ATCTGCGCACTCGCTTGCCT+GGG - chr3.3:10467924-10467943 MS.gene039686:CDS 60.0%
CATGGGATGCTGGCGTGCTT+AGG - chr3.3:10468240-10468259 MS.gene039686:CDS 60.0%
CTGCCCTAATGCAAGTGCGC+TGG - chr3.3:10468010-10468029 MS.gene039686:intron 60.0%
TGGCGTGCTTAGGCCATTCG+AGG - chr3.3:10468250-10468269 MS.gene039686:CDS 60.0%
CAGGCAAGCGAGTGCGCAGA+TGG + chr3.3:10467925-10467944 None:intergenic 65.0%
CATCTGCGCACTCGCTTGCC+TGG - chr3.3:10467923-10467942 MS.gene039686:CDS 65.0%
GACGGGACGCACCCATACGA+TGG + chr3.3:10470126-10470145 None:intergenic 65.0%
GGCCCCACTCCGCACTCAAA+CGG + chr3.3:10467978-10467997 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 10467802 10470249 10467802 ID=MS.gene039686
chr3.3 mRNA 10467802 10470249 10467802 ID=MS.gene039686.t1;Parent=MS.gene039686
chr3.3 exon 10470051 10470249 10470051 ID=MS.gene039686.t1.exon1;Parent=MS.gene039686.t1
chr3.3 CDS 10470051 10470249 10470051 ID=cds.MS.gene039686.t1;Parent=MS.gene039686.t1
chr3.3 exon 10469352 10469958 10469352 ID=MS.gene039686.t1.exon2;Parent=MS.gene039686.t1
chr3.3 CDS 10469352 10469958 10469352 ID=cds.MS.gene039686.t1;Parent=MS.gene039686.t1
chr3.3 exon 10469009 10469246 10469009 ID=MS.gene039686.t1.exon3;Parent=MS.gene039686.t1
chr3.3 CDS 10469009 10469246 10469009 ID=cds.MS.gene039686.t1;Parent=MS.gene039686.t1
chr3.3 exon 10468662 10468934 10468662 ID=MS.gene039686.t1.exon4;Parent=MS.gene039686.t1
chr3.3 CDS 10468662 10468934 10468662 ID=cds.MS.gene039686.t1;Parent=MS.gene039686.t1
chr3.3 exon 10468492 10468551 10468492 ID=MS.gene039686.t1.exon5;Parent=MS.gene039686.t1
chr3.3 CDS 10468492 10468551 10468492 ID=cds.MS.gene039686.t1;Parent=MS.gene039686.t1
chr3.3 exon 10468234 10468364 10468234 ID=MS.gene039686.t1.exon6;Parent=MS.gene039686.t1
chr3.3 CDS 10468234 10468364 10468234 ID=cds.MS.gene039686.t1;Parent=MS.gene039686.t1
chr3.3 exon 10467802 10467955 10467802 ID=MS.gene039686.t1.exon7;Parent=MS.gene039686.t1
chr3.3 CDS 10467802 10467955 10467802 ID=cds.MS.gene039686.t1;Parent=MS.gene039686.t1
Gene Sequence

>MS.gene039686

ATGTCAAGAGCAACCCTGGTAGTTGTTCCAGCAAATTTGGTCAATCATTGGAAAGTACAAATAGAAAAGCATGTCAGGCCTGCTCAATTGCAGGTTTATGTTTGTAACGATCATCGGAAACCATCTGCGCACTCGCTTGCCTGGGATTATGATGTTGTCATCACTACATTTAGCCGTTTGAGTGCGGAGTGGGGCCCACGTAAGAAGACTGCCCTAATGCAAGTGCGCTGGTTTAGGATAATTTTAGATGAAAGGCATACTCTTGGCTCAAGCCTGAGCCTAACAAACAAGTTGCAAATGACTATTTCATTGGTTGCTTCAAATCGGTGGATACTAACTGGAACTCCAACACACCGAACACTCCTAACAGCCAACTTACACATCTACAACCGTTGCTAAGGTTCCTTCATGAAGAAGCTTATGGACTGAATCAAAAATCATGGGATGCTGGCGTGCTTAGGCCATTCGAGGCAGAGATGGAAGAAGGTTGGTCTCGTCTGTTGCGTTTACTTCAGAAATGCATGATTAGTGCTAGAAAGGCAGATTTGCAAAGTATTCCACCATGCATCAAGAAAGTTGTTTTACTAGATTTTAATGAGGAACATGCTAGAAGTTACAATGAGTTGGTACTCACTGTTCGGCGTAATATATTGATGGCTGATTGGAATGATCCTTCGCATATGGAAAGTCTACTGAATCCAAAACAATGGAAATTTCGTAGTGGAGCTATAAAAAATGTAAGGCTTTCATGCTGTGTTGCTGGACATATTAAAGTTACACACGCTGGAGAAGATATTCAGGAAACAATGGATATGTTAGTGAAAAATGGTCTAGATTCTACTTCAGGGGAGTATACCTCCATAAGATACAGTCTCCTGTTTGGTGGCCACTGTGTCAGGTAATATACTTTGATTTCGATATTTCATGTTGCTTTAATTTTCGGTATGTCATAGTTTCTTATCGTCATCATTATCATCATCATTTAATTTAATGAATTTCTTAGGTGCAAGGAATGGTGCCGGCTCCCTTTCATTACGCCATGTCGACATATGTTGTGCCTTGATTGTGTTTCCATTGACAAGACCAAGTGTACATATCCTAGCTGTGATAACTTGTATGAGATGCAGAGTCCTGATTCAATGGCACGGCCAGAAAATCCTAACCCAAAGTGGTTTGTACCCCAAGATCTTATTGAGTTACAACCTTCTTATGCGCAGGCACTGCTTTTAATTGAGAAATCAGTTCGCATTCAATTGTATCTTTTTTGTTTTTGTTTTTATTTTTGAAGTTTTCGTTGTGATTGTTGAATGAACAGGATAATTGGGATCCTGATTGGCAATCAACATCTAGTAGTAAAGTTGCATATCTCGTCCAGAGGTTGAAAGCTTTGCAGGGAACCAATGAAGAGATGAGTTCATATACTGACAATAGCAATGCGATGTATATTGAAAATAGTTTTCCTTTGCACACAAGTCATTCCGCATCATCATTCCAGGAATGTTCAAGTAGCATTAGTACCAATGTGGTCCCTGAAAAAGTTTTGATATTTTCTCAGTTTCTTGAGCATATACATGTCATTGAACAACAGGTGCTTTTTCTGTACCAATTGTGACCATTTGTAAATCTATTATATTTTATTCGTTGGCCATTTGCATATTCTGTTGTAATTGAATAAACAATTAAATTTCTATTTTCCAGTTGGCTATTAATGGTATCAAATATACTGGAATGTATAACCCAATGCATTCTAGCAACAAGGTATAATGTTCGAATTCTTGAGATCTTATTCTCTGTTTCTGATTCTTATGATCTTATTTTCGTTTCTGAAAATATAAACTTACTTTTGGTTTCTAATCTTTGGTTAATTTACTTTTCTCTTTAACAGAAGAAGTCATTAGCCAAGTTCCAGCACGATTCAAGTTGTATGGCACTTCTGATGGATGGGAGTGCTGCATTGGGTCTTGACTTAAGTTTTGTTACACATGTATTTTTAATGGAGCCAATCTGGGACAGAAGGTAAATACATTAATCCGATTCATATGCAAACGATGATATAAAATTAAGCTGTTTTGCTTTAAAGGCGTAGGGATAAATGGATTTTGAATTTTTCTAAAATTGTTATATTGTTAATATATCTGTTGCTTTTGAATGTGTAAACTGGAACTGTATTGTTAAATAAAGCGACTGTTAGTGGATCCTCTGTTTGCCCAATTTGGTGGATGGCTCCTACTTCAATTAAAATTTTCACTCTTGTCCGATTTAATTTTCTTCTAACTCGAGTAAAACCTTTTCAGTATGGAGGAGCAAGTAATTAGTCGTGCCCATCGTATGGGTGCGTCCCGTCCTATTCATGTGGAAACATTAGCTATGCGTGGTACAATTGAAGAGCAAATGCTAGAATTTTTACAGGTGAATCTCTCTTGCTTGAATTACTTAACACCATCCTAA

Protein sequence

>MS.gene039686.t1

MSRATLVVVPANLVNHWKVQIEKHVRPAQLQVYVCNDHRKPSAHSLAWDYDVVITTFSRLSAEWGPLANDYFIGCFKSVDTNWNSNTPNTPNSQLTHLQPLLRFLHEEAYGLNQKSWDAGVLRPFEAEMEEGWSRLLRLLQKCMISARKADLQSIPPCIKKVVLLDFNEEHARSYNELVLTVRRNILMADWNDPSHMESLLNPKQWKFRSGAIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVKNGLDSTSGEYTSIRYSLLFGGHCVRCKEWCRLPFITPCRHMLCLDCVSIDKTKCTYPSCDNLYEMQSPDSMARPENPNPKWFVPQDLIELQPSYAQALLLIEKSDNWDPDWQSTSSSKVAYLVQRLKALQGTNEEMSSYTDNSNAMYIENSFPLHTSHSASSFQECSSSISTNVVPEKVLIFSQFLEHIHVIEQQLAINGIKYTGMYNPMHSSNKKKSLAKFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMRGTIEEQMLEFLQVNLSCLNYLTPS