Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039738.t1 | XP_003598636.1 | 95.3 | 301 | 14 | 0 | 1 | 301 | 1 | 301 | 1.20E-155 | 559.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039738.t1 | Q6IP65 | 53.3 | 261 | 122 | 0 | 43 | 303 | 28 | 288 | 9.9e-71 | 268.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039738.t1 | Q2HW81 | 95.3 | 301 | 14 | 0 | 1 | 301 | 1 | 301 | 8.4e-156 | 559.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene039738.t1 | TR | Rcd1-like |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039738.t1 | MTR_3g018640 | 95.349 | 301 | 14 | 0 | 1 | 301 | 1 | 301 | 0.0 | 580 |
| MS.gene039738.t1 | MTR_8g106940 | 58.255 | 321 | 134 | 0 | 1 | 321 | 1 | 321 | 2.88e-125 | 362 |
| MS.gene039738.t1 | MTR_6g065170 | 58.879 | 321 | 132 | 0 | 1 | 321 | 1 | 321 | 1.22e-123 | 357 |
| MS.gene039738.t1 | MTR_5g093460 | 61.462 | 301 | 115 | 1 | 5 | 305 | 134 | 433 | 5.44e-123 | 360 |
| MS.gene039738.t1 | MTR_5g093460 | 70.229 | 131 | 38 | 1 | 34 | 164 | 1 | 130 | 3.03e-54 | 183 |
| MS.gene039738.t1 | MTR_1g056470 | 60.700 | 257 | 97 | 1 | 1 | 257 | 1 | 253 | 7.43e-112 | 325 |
| MS.gene039738.t1 | MTR_3g053170 | 59.857 | 279 | 112 | 0 | 38 | 316 | 26 | 304 | 1.63e-111 | 326 |
| MS.gene039738.t1 | MTR_1g043540 | 60.169 | 118 | 46 | 1 | 142 | 259 | 9 | 125 | 1.12e-36 | 129 |
| MS.gene039738.t1 | MTR_1g043520 | 37.391 | 115 | 35 | 2 | 168 | 282 | 29 | 106 | 1.62e-12 | 63.5 |
| MS.gene039738.t1 | MTR_1g043500 | 49.206 | 63 | 31 | 1 | 196 | 257 | 3 | 65 | 4.53e-12 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene039738.t1 | AT3G20800 | 55.814 | 301 | 127 | 2 | 21 | 316 | 17 | 316 | 2.38e-110 | 323 |
| MS.gene039738.t1 | AT5G12980 | 53.455 | 275 | 127 | 1 | 31 | 304 | 28 | 302 | 5.41e-99 | 294 |
| MS.gene039738.t1 | AT2G32550 | 35.510 | 245 | 142 | 5 | 53 | 285 | 67 | 307 | 3.21e-35 | 130 |
| MS.gene039738.t1 | AT2G32550 | 35.897 | 234 | 134 | 5 | 64 | 285 | 39 | 268 | 6.08e-35 | 129 |
| MS.gene039738.t1 | AT2G32550 | 35.648 | 216 | 123 | 5 | 82 | 285 | 2 | 213 | 4.32e-30 | 114 |
Find 56 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGAACTTGGACCTTTATTA+TGG | 0.221177 | 3.3:-11247058 | MS.gene039738:CDS |
| CTCGTTTATCTCAAAATTGC+AGG | 0.285763 | 3.3:-11244477 | MS.gene039738:intron |
| AGAAATGAGATCCTTGTATC+AGG | 0.301701 | 3.3:+11246049 | None:intergenic |
| ATAGAAACCTATCACTTCTT+TGG | 0.303481 | 3.3:+11244840 | None:intergenic |
| AGGAATGGATATAAATATAA+AGG | 0.360461 | 3.3:+11245657 | None:intergenic |
| GTTGCTAGTCTTGGAGTCAT+TGG | 0.372727 | 3.3:-11245594 | MS.gene039738:CDS |
| TATATTAGACGATGATGGTT+TGG | 0.376298 | 3.3:-11244620 | MS.gene039738:CDS |
| TTGGCATCTTTGAGCCTGTT+TGG | 0.379455 | 3.3:+11244333 | None:intergenic |
| CCAACAGTATTCCATAATAA+AGG | 0.383147 | 3.3:+11247047 | None:intergenic |
| TATGATCAGTGGTGCTAGAT+TGG | 0.401740 | 3.3:+11248477 | None:intergenic |
| GTTAACACCAAAGAAGTGAT+AGG | 0.420089 | 3.3:-11244847 | MS.gene039738:CDS |
| TGTTGTTACATGAGAATGTT+GGG | 0.422120 | 3.3:-11243846 | MS.gene039738:CDS |
| CAATGTTCTAGCATTACTTC+AGG | 0.422671 | 3.3:-11246280 | MS.gene039738:intron |
| TCAGAGCACCAAGTTATTTG+AGG | 0.428345 | 3.3:-11247078 | MS.gene039738:intron |
| TAACAACTTATCTTCCAAAC+AGG | 0.438040 | 3.3:-11244347 | MS.gene039738:CDS |
| TAACACCCTTTGAAAATTTG+AGG | 0.438320 | 3.3:-11245617 | MS.gene039738:CDS |
| TTCTTTGTTGAGAGCGATTG+AGG | 0.439462 | 3.3:+11248536 | None:intergenic |
| GATTGTGAGGGAGAGAGATT+CGG | 0.440290 | 3.3:+11246315 | None:intergenic |
| AATTTGAGGGTTGCTAGTCT+TGG | 0.449868 | 3.3:-11245603 | MS.gene039738:CDS |
| GGAGGAATTGATGATATTGT+AGG | 0.453082 | 3.3:-11243793 | MS.gene039738:CDS |
| ATGATCAGTGGTGCTAGATT+GGG | 0.463771 | 3.3:+11248478 | None:intergenic |
| AATCTAGCACCACTGATCAT+AGG | 0.464495 | 3.3:-11248475 | MS.gene039738:CDS |
| AAAATTATATTAGACGATGA+TGG | 0.467412 | 3.3:-11244625 | MS.gene039738:CDS |
| TGTTATTGAACTCAGCAATC+CGG | 0.481393 | 3.3:-11248432 | MS.gene039738:CDS |
| ACCAAGTTATTTGAGGAACT+TGG | 0.485648 | 3.3:-11247071 | MS.gene039738:CDS |
| AGATTCGGTGGTGAAAGAGT+AGG | 0.488495 | 3.3:+11246330 | None:intergenic |
| AACCGAGTTCCTTTAGAAGC+AGG | 0.491153 | 3.3:-11243820 | MS.gene039738:CDS |
| GCTAGTCTTGGAGTCATTGG+TGG | 0.491588 | 3.3:-11245591 | MS.gene039738:CDS |
| AACACCCTTTGAAAATTTGA+GGG | 0.491722 | 3.3:-11245616 | MS.gene039738:CDS |
| CCTTTATTATGGAATACTGT+TGG | 0.492405 | 3.3:-11247047 | MS.gene039738:CDS |
| CCTCCTCTACCTGCTTCTAA+AGG | 0.503277 | 3.3:+11243811 | None:intergenic |
| GTTCCTTTAGAAGCAGGTAG+AGG | 0.520910 | 3.3:-11243814 | MS.gene039738:CDS |
| TCCAAGTTCCTCAAATAACT+TGG | 0.522228 | 3.3:+11247070 | None:intergenic |
| CACCCTCACCTCGTTTGTCG+AGG | 0.530068 | 3.3:-11244519 | MS.gene039738:CDS |
| TGGCATCTCACCCTGATACA+AGG | 0.537570 | 3.3:-11246060 | MS.gene039738:CDS |
| CTGTTGTTACATGAGAATGT+TGG | 0.540471 | 3.3:-11243847 | MS.gene039738:CDS |
| AGTCATTGGTGGCTCGATGA+AGG | 0.546340 | 3.3:-11245580 | MS.gene039738:intron |
| GAGGAATTGATGATATTGTA+GGG | 0.550926 | 3.3:-11243792 | MS.gene039738:CDS |
| CCTTTAGAAGCAGGTAGAGG+AGG | 0.553169 | 3.3:-11243811 | MS.gene039738:CDS |
| TGTTTGTCTAATATGCAAAA+CGG | 0.565201 | 3.3:-11244793 | MS.gene039738:CDS |
| ACAAGGATCTCATTTCTCAA+TGG | 0.566776 | 3.3:-11246043 | MS.gene039738:intron |
| AAGCCTCGACAAACGAGGTG+AGG | 0.569309 | 3.3:+11244516 | None:intergenic |
| TGCTCTCTATGTGCTCTCCA+AGG | 0.584461 | 3.3:-11248396 | MS.gene039738:intron |
| AGCCTCGACAAACGAGGTGA+GGG | 0.588745 | 3.3:+11244517 | None:intergenic |
| CTAGATTGGGTAGAATCACC+AGG | 0.589884 | 3.3:+11248491 | None:intergenic |
| GAAATGAGATCCTTGTATCA+GGG | 0.596244 | 3.3:+11246050 | None:intergenic |
| CACACTCGAGTTGATTGTGA+GGG | 0.603583 | 3.3:+11246303 | None:intergenic |
| TAGCACCACTGATCATAGGA+TGG | 0.627844 | 3.3:-11248471 | MS.gene039738:CDS |
| TACCTGCTTCTAAAGGAACT+CGG | 0.631809 | 3.3:+11243818 | None:intergenic |
| CTCGACAAACGAGGTGAGGG+TGG | 0.635662 | 3.3:+11244520 | None:intergenic |
| GATTGCTGAGTTCAATAACA+AGG | 0.649486 | 3.3:+11248435 | None:intergenic |
| GCACACTCGAGTTGATTGTG+AGG | 0.665692 | 3.3:+11246302 | None:intergenic |
| GTAAGCCATCCTATGATCAG+TGG | 0.669763 | 3.3:+11248466 | None:intergenic |
| ATCAAAAGCCTCGACAAACG+AGG | 0.676514 | 3.3:+11244511 | None:intergenic |
| TGTGAGGGAGAGAGATTCGG+TGG | 0.689243 | 3.3:+11246318 | None:intergenic |
| GTTGTTACATGAGAATGTTG+GGG | 0.746517 | 3.3:-11243845 | MS.gene039738:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACTCTATAATAATAAAT+TGG | + | chr3.3:11247601-11247620 | None:intergenic | 10.0% |
| !! | AATTATAAAAAATATCACAA+CGG | + | chr3.3:11244180-11244199 | None:intergenic | 10.0% |
| !! | AGTTATAATAAATTAATTGT+CGG | - | chr3.3:11247122-11247141 | MS.gene039738:intron | 10.0% |
| !! | ATTAGTTAATAATAAATCAA+TGG | + | chr3.3:11248220-11248239 | None:intergenic | 10.0% |
| !! | ATTATATGAAAATTGATATT+AGG | - | chr3.3:11247274-11247293 | MS.gene039738:intron | 10.0% |
| !! | GAAAAATAAAAACATAAATT+TGG | + | chr3.3:11245651-11245670 | None:intergenic | 10.0% |
| !! | TAGAATAAAAAATTGATAAA+TGG | + | chr3.3:11244805-11244824 | None:intergenic | 10.0% |
| !! | TGCATATAATAAAAAAAAAA+AGG | + | chr3.3:11246636-11246655 | None:intergenic | 10.0% |
| !!! | AAAAAATTTAATGAAAGTTT+TGG | + | chr3.3:11245040-11245059 | None:intergenic | 10.0% |
| !!! | ATATATATTTTTTTACATCA+AGG | + | chr3.3:11246193-11246212 | None:intergenic | 10.0% |
| !!! | ATATTGTGATTTTTTTTTAA+TGG | - | chr3.3:11244651-11244670 | MS.gene039738:intron | 10.0% |
| !!! | TACAATAATATCTAATTTTA+GGG | + | chr3.3:11247176-11247195 | None:intergenic | 10.0% |
| !!! | TTTTTATAATTGAATTGAAA+GGG | - | chr3.3:11244189-11244208 | MS.gene039738:intron | 10.0% |
| !!! | TTTTTTATAATTGAATTGAA+AGG | - | chr3.3:11244188-11244207 | MS.gene039738:intron | 10.0% |
| !! | AAAATCACAATATCAAATTT+CGG | + | chr3.3:11244644-11244663 | None:intergenic | 15.0% |
| !! | AAAATTGATATTAGGTATTT+GGG | - | chr3.3:11247282-11247301 | MS.gene039738:intron | 15.0% |
| !! | ATAGATTCATAATCTAAAAA+TGG | + | chr3.3:11245596-11245615 | None:intergenic | 15.0% |
| !! | GACAATTAATTTATTATAAC+TGG | + | chr3.3:11247123-11247142 | None:intergenic | 15.0% |
| !! | TCCAAAAAAAAAAAACTTTA+TGG | - | chr3.3:11247006-11247025 | MS.gene039738:intron | 15.0% |
| !! | TTAAAAAAACAAAAGTTAGA+AGG | + | chr3.3:11246776-11246795 | None:intergenic | 15.0% |
| !!! | AAATATCTAGTTATTTTTAG+CGG | - | chr3.3:11247030-11247049 | MS.gene039738:CDS | 15.0% |
| !!! | AATAACGTGAAAAATATTTT+GGG | - | chr3.3:11246488-11246507 | MS.gene039738:intron | 15.0% |
| !!! | CTACAATAATATCTAATTTT+AGG | + | chr3.3:11247177-11247196 | None:intergenic | 15.0% |
| !!! | GAACTTTTATACTAAAATTT+CGG | - | chr3.3:11245159-11245178 | MS.gene039738:intron | 15.0% |
| !!! | TAATAACGTGAAAAATATTT+TGG | - | chr3.3:11246487-11246506 | MS.gene039738:intron | 15.0% |
| !!! | TATACAGTAAAATTTTTCAA+CGG | + | chr3.3:11244578-11244597 | None:intergenic | 15.0% |
| !!! | TTGAATATTATTTTAGCATA+TGG | - | chr3.3:11246090-11246109 | MS.gene039738:intron | 15.0% |
| !! | AAAATTATATTAGACGATGA+TGG | - | chr3.3:11247697-11247716 | MS.gene039738:intron | 20.0% |
| !! | AGGAATGGATATAAATATAA+AGG | + | chr3.3:11246668-11246687 | None:intergenic | 20.0% |
| !! | GAAAATTGATATTAGGTATT+TGG | - | chr3.3:11247281-11247300 | MS.gene039738:intron | 20.0% |
| !! | TTCACACAATAAACTAATTA+AGG | - | chr3.3:11246951-11246970 | MS.gene039738:intron | 20.0% |
| !! | TTGAATTCTCTCTTTATAAA+AGG | + | chr3.3:11248379-11248398 | None:intergenic | 20.0% |
| !!! | AAATTGATAAATGGATTTCT+AGG | + | chr3.3:11244796-11244815 | None:intergenic | 20.0% |
| !!! | AATTTAGTTTTTAAACCTCT+AGG | - | chr3.3:11245800-11245819 | MS.gene039738:intron | 20.0% |
| !!! | ATCATTTTTTGTTGAAAACT+TGG | - | chr3.3:11244529-11244548 | MS.gene039738:CDS | 20.0% |
| !!! | ATGTTTTTTTTTATAGTGTG+TGG | - | chr3.3:11246242-11246261 | MS.gene039738:intron | 20.0% |
| !!! | ATTACTTATTATTTTCTAGC+TGG | - | chr3.3:11245340-11245359 | MS.gene039738:intron | 20.0% |
| !!! | ATTGATTTTCATGTATTTTG+GGG | + | chr3.3:11246130-11246149 | None:intergenic | 20.0% |
| !!! | CAATGTTAGTAAAAGTTTTA+AGG | + | chr3.3:11247094-11247113 | None:intergenic | 20.0% |
| !!! | CTTAAAACTTTTACTAACAT+TGG | - | chr3.3:11247092-11247111 | MS.gene039738:intron | 20.0% |
| !!! | GATTGATTTTCATGTATTTT+GGG | + | chr3.3:11246131-11246150 | None:intergenic | 20.0% |
| !!! | GCCATAAAGTTTTTTTTTTT+TGG | + | chr3.3:11247010-11247029 | None:intergenic | 20.0% |
| !!! | GTATCATGTTTGTTTTATTT+TGG | - | chr3.3:11245137-11245156 | MS.gene039738:intron | 20.0% |
| !!! | TGATTGATTTTCATGTATTT+TGG | + | chr3.3:11246132-11246151 | None:intergenic | 20.0% |
| !!! | TGTGAAAATATATTTTGCAA+TGG | - | chr3.3:11246869-11246888 | MS.gene039738:intron | 20.0% |
| ! | AAAAACAAAAGTTAGAAGGA+TGG | + | chr3.3:11246772-11246791 | None:intergenic | 25.0% |
| ! | AACTTCTTTCATCTTAAAAC+AGG | - | chr3.3:11247939-11247958 | MS.gene039738:intron | 25.0% |
| ! | AAGGATTACTCTAAACTTTA+TGG | - | chr3.3:11246970-11246989 | MS.gene039738:intron | 25.0% |
| ! | AATTTGGAGAAAGATATACA+TGG | + | chr3.3:11245635-11245654 | None:intergenic | 25.0% |
| ! | ACGAAAAAAATTGATGAGAT+TGG | + | chr3.3:11248011-11248030 | None:intergenic | 25.0% |
| ! | ACTTAGAAAATATATGGTGA+TGG | - | chr3.3:11245688-11245707 | MS.gene039738:intron | 25.0% |
| ! | ACTTCTTTCATCTTAAAACA+GGG | - | chr3.3:11247940-11247959 | MS.gene039738:intron | 25.0% |
| ! | ATATTACAAGACATGCTATT+AGG | - | chr3.3:11248138-11248157 | MS.gene039738:intron | 25.0% |
| ! | ATATTTGATGAAACACACAA+TGG | - | chr3.3:11245504-11245523 | MS.gene039738:intron | 25.0% |
| ! | ATTCAAATCTATCTTAAGAG+AGG | + | chr3.3:11244905-11244924 | None:intergenic | 25.0% |
| ! | CAAAACGAAATAAATAAGCA+TGG | + | chr3.3:11247436-11247455 | None:intergenic | 25.0% |
| ! | CAGATGCATTAAAATTGAAA+AGG | + | chr3.3:11244508-11244527 | None:intergenic | 25.0% |
| ! | CTAGATATTGTTTCAATTTC+AGG | - | chr3.3:11248426-11248445 | MS.gene039738:CDS | 25.0% |
| ! | GACAATTCAAAGATGTTATT+AGG | + | chr3.3:11244104-11244123 | None:intergenic | 25.0% |
| ! | TAAGATGAAAGAAGTTTGAT+CGG | + | chr3.3:11247935-11247954 | None:intergenic | 25.0% |
| ! | TAATTGCTTGGTTATTGAAA+GGG | - | chr3.3:11244385-11244404 | MS.gene039738:intron | 25.0% |
| ! | TACGGAGATATATAACTATT+TGG | - | chr3.3:11246436-11246455 | MS.gene039738:intron | 25.0% |
| ! | TATTACAAGACATGCTATTA+GGG | - | chr3.3:11248139-11248158 | MS.gene039738:intron | 25.0% |
| ! | TGTTTGTCTAATATGCAAAA+CGG | - | chr3.3:11247529-11247548 | MS.gene039738:intron | 25.0% |
| ! | TTATTCTGAATTTCAATCCA+AGG | - | chr3.3:11246334-11246353 | MS.gene039738:CDS | 25.0% |
| ! | TTATTTATGTGTGCTCTTAA+AGG | - | chr3.3:11244768-11244787 | MS.gene039738:intron | 25.0% |
| ! | TTCAACAATTCTTAAGATCA+TGG | + | chr3.3:11247885-11247904 | None:intergenic | 25.0% |
| ! | TTTGTTGAAAACTTGGTATT+CGG | - | chr3.3:11244536-11244555 | MS.gene039738:CDS | 25.0% |
| !! | CATTTATGGTATTTTCAAAG+TGG | - | chr3.3:11248290-11248309 | MS.gene039738:intron | 25.0% |
| !! | GTTCTTTTGTGAAAATACTA+CGG | - | chr3.3:11246418-11246437 | MS.gene039738:intron | 25.0% |
| !! | TATTTTTCCAACTTTTACGA+GGG | - | chr3.3:11245663-11245682 | MS.gene039738:CDS | 25.0% |
| !! | TGCTTATTTATTTCGTTTTG+TGG | - | chr3.3:11247436-11247455 | MS.gene039738:intron | 25.0% |
| !!! | AAGTTTTAAGGACAGTTATA+AGG | + | chr3.3:11247082-11247101 | None:intergenic | 25.0% |
| !!! | ATTGTCGGTAAAAGTTTTAA+CGG | - | chr3.3:11247137-11247156 | MS.gene039738:intron | 25.0% |
| !!! | CTTTCCCATTTTTAACATAA+TGG | + | chr3.3:11246571-11246590 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTGACACATTTA+TGG | - | chr3.3:11248276-11248295 | MS.gene039738:intron | 25.0% |
| !!! | TACTATTGCAGTATTTTTAC+AGG | - | chr3.3:11245298-11245317 | MS.gene039738:intron | 25.0% |
| !!! | TAGCTCAAGGATTTTTTTTA+GGG | - | chr3.3:11245757-11245776 | MS.gene039738:intron | 25.0% |
| !!! | TGAAAAATATTTTGGGTAAG+AGG | - | chr3.3:11246495-11246514 | MS.gene039738:intron | 25.0% |
| !!! | TGAAATGATGATTGTTTTGA+AGG | + | chr3.3:11245573-11245592 | None:intergenic | 25.0% |
| !!! | TTAGCTCAAGGATTTTTTTT+AGG | - | chr3.3:11245756-11245775 | MS.gene039738:intron | 25.0% |
| !!! | TTATTTTTCCAACTTTTACG+AGG | - | chr3.3:11245662-11245681 | MS.gene039738:CDS | 25.0% |
| AAAAGTTGGATTACATGTGT+GGG | + | chr3.3:11244849-11244868 | None:intergenic | 30.0% | |
| AGATAGATATGTAAGAACCT+TGG | + | chr3.3:11243946-11243965 | None:intergenic | 30.0% | |
| AGGGAGACTTAGAAAATATA+TGG | - | chr3.3:11245682-11245701 | MS.gene039738:intron | 30.0% | |
| AGGGTTCATTGTTATCAAAA+CGG | + | chr3.3:11244126-11244145 | None:intergenic | 30.0% | |
| ATAGAAACCTATCACTTCTT+TGG | + | chr3.3:11247485-11247504 | None:intergenic | 30.0% | |
| ATCACAATATCAAATTTCGG+TGG | + | chr3.3:11244641-11244660 | None:intergenic | 30.0% | |
| ATGAAACACACAATGGTATT+GGG | - | chr3.3:11245511-11245530 | MS.gene039738:intron | 30.0% | |
| ATGAACTAATCCTAACAAGT+TGG | + | chr3.3:11247318-11247337 | None:intergenic | 30.0% | |
| ATGTTATTAGGTCTAGCAAA+AGG | + | chr3.3:11244092-11244111 | None:intergenic | 30.0% | |
| ATTATAAATGTTGCAACCTG+TGG | + | chr3.3:11247673-11247692 | None:intergenic | 30.0% | |
| CAGGCCATTATGTTAAAAAT+GGG | - | chr3.3:11246564-11246583 | MS.gene039738:intron | 30.0% | |
| CCAACAGTATTCCATAATAA+AGG | + | chr3.3:11245278-11245297 | None:intergenic | 30.0% | |
| CCTTTATTATGGAATACTGT+TGG | - | chr3.3:11245275-11245294 | MS.gene039738:intron | 30.0% | |
| CTAATTGCTTGGTTATTGAA+AGG | - | chr3.3:11244384-11244403 | MS.gene039738:intron | 30.0% | |
| CTTTCAATAACCAAGCAATT+AGG | + | chr3.3:11244386-11244405 | None:intergenic | 30.0% | |
| GATATACAACTTTCATTAGC+AGG | + | chr3.3:11247649-11247668 | None:intergenic | 30.0% | |
| GTATGATACACACATTCAAT+AGG | + | chr3.3:11248183-11248202 | None:intergenic | 30.0% | |
| TAACAACTTATCTTCCAAAC+AGG | - | chr3.3:11247975-11247994 | MS.gene039738:intron | 30.0% | |
| TCAAAGTGGATACTAACTAT+AGG | - | chr3.3:11248304-11248323 | MS.gene039738:intron | 30.0% | |
| TCTGGGAGGTAAATAAAATT+TGG | - | chr3.3:11244280-11244299 | MS.gene039738:intron | 30.0% | |
| TGAACTAATCCTAACAAGTT+GGG | + | chr3.3:11247317-11247336 | None:intergenic | 30.0% | |
| TGTCACAAAACTTACTAAAG+AGG | + | chr3.3:11248270-11248289 | None:intergenic | 30.0% | |
| TGTTATTAGGTCTAGCAAAA+GGG | + | chr3.3:11244091-11244110 | None:intergenic | 30.0% | |
| TGTTGTTACATGAGAATGTT+GGG | - | chr3.3:11248476-11248495 | MS.gene039738:CDS | 30.0% | |
| TTAGCAGACTTAATCACAAT+TGG | - | chr3.3:11244957-11244976 | MS.gene039738:intron | 30.0% | |
| TTCACAAGTAATCCAAATCT+TGG | - | chr3.3:11244002-11244021 | MS.gene039738:intron | 30.0% | |
| TTCACTGTTTAGTGTATCAT+GGG | - | chr3.3:11244408-11244427 | MS.gene039738:intron | 30.0% | |
| TTGTGATTAAGTCTGCTAAA+TGG | + | chr3.3:11244956-11244975 | None:intergenic | 30.0% | |
| TTGTGGTATTTGATATTCAC+AGG | - | chr3.3:11247453-11247472 | MS.gene039738:intron | 30.0% | |
| TTTATCTCAAAATTGCAGGT+TGG | - | chr3.3:11247849-11247868 | MS.gene039738:intron | 30.0% | |
| ! | AACACCCTTTGAAAATTTGA+GGG | - | chr3.3:11246706-11246725 | MS.gene039738:intron | 30.0% |
| ! | AACGTTTGAAACAAGAGAAA+AGG | + | chr3.3:11247912-11247931 | None:intergenic | 30.0% |
| ! | ACAAATTATTCTGGAGAACT+TGG | + | chr3.3:11244335-11244354 | None:intergenic | 30.0% |
| ! | CAAATTATTCTGGAGAACTT+GGG | + | chr3.3:11244334-11244353 | None:intergenic | 30.0% |
| ! | GAGGAATTGATGATATTGTA+GGG | - | chr3.3:11248530-11248549 | MS.gene039738:CDS | 30.0% |
| ! | GTATTGGTAACAAAAATGGA+TGG | + | chr3.3:11247627-11247646 | None:intergenic | 30.0% |
| ! | TAACACCCTTTGAAAATTTG+AGG | - | chr3.3:11246705-11246724 | MS.gene039738:intron | 30.0% |
| ! | TATAGCCTCATTTAAAGTGA+AGG | - | chr3.3:11244594-11244613 | MS.gene039738:CDS | 30.0% |
| ! | TATATTAGACGATGATGGTT+TGG | - | chr3.3:11247702-11247721 | MS.gene039738:intron | 30.0% |
| ! | TCTCCAGAATAATTTGTCTT+TGG | - | chr3.3:11244338-11244357 | MS.gene039738:CDS | 30.0% |
| !! | AAAATTTTTCAACGGTGTTC+CGG | + | chr3.3:11244570-11244589 | None:intergenic | 30.0% |
| !! | TCATTTTTAACGTCTCTCAT+GGG | - | chr3.3:11243978-11243997 | MS.gene039738:intron | 30.0% |
| !! | TTCATTTTTAACGTCTCTCA+TGG | - | chr3.3:11243977-11243996 | MS.gene039738:intron | 30.0% |
| !!! | GCTACAACAGAGAATTTTTT+TGG | - | chr3.3:11247736-11247755 | MS.gene039738:intron | 30.0% |
| !!! | GTTGTGCTGTTTTTTTTTTC+AGG | - | chr3.3:11245952-11245971 | MS.gene039738:intron | 30.0% |
| !!! | TTAACTTGCTTGTCGTTTTA+AGG | + | chr3.3:11246688-11246707 | None:intergenic | 30.0% |
| AAAACTTGGTATTCGGTCAA+AGG | - | chr3.3:11244543-11244562 | MS.gene039738:CDS | 35.0% | |
| AAGTTATTGCAACCAAAAGC+CGG | + | chr3.3:11246543-11246562 | None:intergenic | 35.0% | |
| ACAAGGATCTCATTTCTCAA+TGG | - | chr3.3:11246279-11246298 | MS.gene039738:intron | 35.0% | |
| ACAAGTAATCCAAATCTTGG+AGG | - | chr3.3:11244005-11244024 | MS.gene039738:intron | 35.0% | |
| ACCAAGTTATTTGAGGAACT+TGG | - | chr3.3:11245251-11245270 | MS.gene039738:intron | 35.0% | |
| AGAAATGAGATCCTTGTATC+AGG | + | chr3.3:11246276-11246295 | None:intergenic | 35.0% | |
| AGAACTTGGGTTCAATTCTT+GGG | + | chr3.3:11244321-11244340 | None:intergenic | 35.0% | |
| AGGAACTTGGACCTTTATTA+TGG | - | chr3.3:11245264-11245283 | MS.gene039738:intron | 35.0% | |
| AGGACAGTTATAAGGAATGT+TGG | + | chr3.3:11247074-11247093 | None:intergenic | 35.0% | |
| AGGATGATCCAAAAACTATG+AGG | - | chr3.3:11248446-11248465 | MS.gene039738:CDS | 35.0% | |
| ATGGATATAGTCTGACAATG+CGG | + | chr3.3:11244937-11244956 | None:intergenic | 35.0% | |
| ATTCATAAGAGTCGCACTAA+TGG | + | chr3.3:11245863-11245882 | None:intergenic | 35.0% | |
| CAAAAGTTGGATTACATGTG+TGG | + | chr3.3:11244850-11244869 | None:intergenic | 35.0% | |
| CAACTTTCATTAGCAGGTAT+TGG | + | chr3.3:11247643-11247662 | None:intergenic | 35.0% | |
| CAATGTTCTAGCATTACTTC+AGG | - | chr3.3:11246042-11246061 | MS.gene039738:intron | 35.0% | |
| CCACCAAAGACAAATTATTC+TGG | + | chr3.3:11244344-11244363 | None:intergenic | 35.0% | |
| CTCGTTTATCTCAAAATTGC+AGG | - | chr3.3:11247845-11247864 | MS.gene039738:intron | 35.0% | |
| CTGTTGTTACATGAGAATGT+TGG | - | chr3.3:11248475-11248494 | MS.gene039738:CDS | 35.0% | |
| CTTTGCCTTCACTTTAAATG+AGG | + | chr3.3:11244602-11244621 | None:intergenic | 35.0% | |
| GAAATGAGATCCTTGTATCA+GGG | + | chr3.3:11246275-11246294 | None:intergenic | 35.0% | |
| GAAGGATTGTAATACGACAA+AGG | + | chr3.3:11245555-11245574 | None:intergenic | 35.0% | |
| GAATTTGGATTCTCTTTGAC+CGG | - | chr3.3:11246521-11246540 | MS.gene039738:intron | 35.0% | |
| GATGAAACACACAATGGTAT+TGG | - | chr3.3:11245510-11245529 | MS.gene039738:intron | 35.0% | |
| GATTGCTGAGTTCAATAACA+AGG | + | chr3.3:11243890-11243909 | None:intergenic | 35.0% | |
| GATTTGAACTTCTTTCCTAG+AGG | + | chr3.3:11245818-11245837 | None:intergenic | 35.0% | |
| GCAGGCCATTATGTTAAAAA+TGG | - | chr3.3:11246563-11246582 | MS.gene039738:intron | 35.0% | |
| GGAAATGAGACCTGATAATT+TGG | - | chr3.3:11244251-11244270 | MS.gene039738:intron | 35.0% | |
| GTTAACACCAAAGAAGTGAT+AGG | - | chr3.3:11247475-11247494 | MS.gene039738:intron | 35.0% | |
| GTTCACTGTTTAGTGTATCA+TGG | - | chr3.3:11244407-11244426 | MS.gene039738:intron | 35.0% | |
| GTTGTTACATGAGAATGTTG+GGG | - | chr3.3:11248477-11248496 | MS.gene039738:CDS | 35.0% | |
| TAGTTCATCTACATCACGAA+GGG | - | chr3.3:11247330-11247349 | MS.gene039738:intron | 35.0% | |
| TCCAAGTTCCTCAAATAACT+TGG | + | chr3.3:11245255-11245274 | None:intergenic | 35.0% | |
| TGAAAGTTGTATATCTCCAC+AGG | - | chr3.3:11247654-11247673 | MS.gene039738:intron | 35.0% | |
| TGATCCAAAAACTATGAGGT+TGG | - | chr3.3:11248450-11248469 | MS.gene039738:CDS | 35.0% | |
| TGGAGAAAGATATACATGGT+AGG | + | chr3.3:11245631-11245650 | None:intergenic | 35.0% | |
| TGTTATTGAACTCAGCAATC+CGG | - | chr3.3:11243890-11243909 | MS.gene039738:intron | 35.0% | |
| TTAGTTCATCTACATCACGA+AGG | - | chr3.3:11247329-11247348 | MS.gene039738:intron | 35.0% | |
| TTGGGTAAGAGGAATGAATT+TGG | - | chr3.3:11246506-11246525 | MS.gene039738:intron | 35.0% | |
| TTGTGCATGTATCTTACTTG+TGG | - | chr3.3:11245463-11245482 | MS.gene039738:intron | 35.0% | |
| TTTCAAGAGATGTTAGCTCA+AGG | - | chr3.3:11245744-11245763 | MS.gene039738:intron | 35.0% | |
| TTTCGTGTAAGTACTTCTTG+TGG | - | chr3.3:11248025-11248044 | MS.gene039738:intron | 35.0% | |
| ! | ACATCGTTTATAGCTTTTCC+TGG | - | chr3.3:11243813-11243832 | MS.gene039738:CDS | 35.0% |
| ! | ACTTACAAACCCAACTTGTT+AGG | - | chr3.3:11247305-11247324 | MS.gene039738:intron | 35.0% |
| ! | AGCAACCCTCAAATTTTCAA+AGG | + | chr3.3:11246714-11246733 | None:intergenic | 35.0% |
| ! | AGTACCAACCTCATAGTTTT+TGG | + | chr3.3:11248457-11248476 | None:intergenic | 35.0% |
| ! | CACACATGTAATCCAACTTT+TGG | - | chr3.3:11244848-11244867 | MS.gene039738:CDS | 35.0% |
| ! | CCAGAATAATTTGTCTTTGG+TGG | - | chr3.3:11244341-11244360 | MS.gene039738:CDS | 35.0% |
| ! | GCAACCCTCAAATTTTCAAA+GGG | + | chr3.3:11246713-11246732 | None:intergenic | 35.0% |
| ! | GGAGGAATTGATGATATTGT+AGG | - | chr3.3:11248529-11248548 | MS.gene039738:CDS | 35.0% |
| ! | TGATAATTTGGAGTACGTCT+GGG | - | chr3.3:11244263-11244282 | MS.gene039738:intron | 35.0% |
| !! | GCAGGTATTGGTAACAAAAA+TGG | + | chr3.3:11247631-11247650 | None:intergenic | 35.0% |
| !! | GGTCATTTTACAGTTGTTTG+AGG | + | chr3.3:11245842-11245861 | None:intergenic | 35.0% |
| !! | TTTTGGTTGCAATAACTTGC+AGG | - | chr3.3:11246545-11246564 | MS.gene039738:intron | 35.0% |
| !!! | AGAGCATTTTCTCTAAGATC+CGG | + | chr3.3:11243912-11243931 | None:intergenic | 35.0% |
| !!! | TTGCTTGTCGTTTTAAGGAA+TGG | + | chr3.3:11246683-11246702 | None:intergenic | 35.0% |
| AATCTAGCACCACTGATCAT+AGG | - | chr3.3:11243847-11243866 | MS.gene039738:CDS | 40.0% | |
| CAGACGTACTCCAAATTATC+AGG | + | chr3.3:11244264-11244283 | None:intergenic | 40.0% | |
| CTAGCAAAAGGGTTCATTGT+TGG | + | chr3.3:11244080-11244099 | None:intergenic | 40.0% | |
| GAGAACTTGGGTTCAATTCT+TGG | + | chr3.3:11244322-11244341 | None:intergenic | 40.0% | |
| TAAGTCTCCCTCGTAAAAGT+TGG | + | chr3.3:11245673-11245692 | None:intergenic | 40.0% | |
| TACAAGACATGCTATTAGGG+TGG | - | chr3.3:11248142-11248161 | MS.gene039738:intron | 40.0% | |
| TGTTTACGCTTCACTTCTCA+GGG | - | chr3.3:11244229-11244248 | MS.gene039738:intron | 40.0% | |
| TTCTTTGTTGAGAGCGATTG+AGG | + | chr3.3:11243789-11243808 | None:intergenic | 40.0% | |
| TTGGCAACTTCTCCAAAAGT+TGG | + | chr3.3:11244863-11244882 | None:intergenic | 40.0% | |
| ! | AAAGGGTTCATTGTTGGTAG+AGG | + | chr3.3:11244074-11244093 | None:intergenic | 40.0% |
| ! | AATTTGAGGGTTGCTAGTCT+TGG | - | chr3.3:11246719-11246738 | MS.gene039738:intron | 40.0% |
| ! | AGCACGTTTAGTTTAACGCT+TGG | + | chr3.3:11244882-11244901 | None:intergenic | 40.0% |
| ! | ATGATCAGTGGTGCTAGATT+GGG | + | chr3.3:11243847-11243866 | None:intergenic | 40.0% |
| ! | ATGCTATTAGGGTGGCTTTT+AGG | - | chr3.3:11248150-11248169 | MS.gene039738:intron | 40.0% |
| ! | CTGATAATTTGGAGTACGTC+TGG | - | chr3.3:11244262-11244281 | MS.gene039738:intron | 40.0% |
| ! | TACCTGCTTCTAAAGGAACT+CGG | + | chr3.3:11248507-11248526 | None:intergenic | 40.0% |
| ! | TATGATCAGTGGTGCTAGAT+TGG | + | chr3.3:11243848-11243867 | None:intergenic | 40.0% |
| ! | TCAGAGCACCAAGTTATTTG+AGG | - | chr3.3:11245244-11245263 | MS.gene039738:intron | 40.0% |
| ACCAAGCAATTAGGCTCAAG+TGG | + | chr3.3:11244377-11244396 | None:intergenic | 45.0% | |
| ACCACTTGAGCCTAATTGCT+TGG | - | chr3.3:11244373-11244392 | MS.gene039738:intron | 45.0% | |
| ACTTGGGTTCAATTCTTGGG+TGG | + | chr3.3:11244318-11244337 | None:intergenic | 45.0% | |
| ATCAAAAGCCTCGACAAACG+AGG | + | chr3.3:11247814-11247833 | None:intergenic | 45.0% | |
| ATCACAACGCCTCCAAGATT+TGG | + | chr3.3:11244017-11244036 | None:intergenic | 45.0% | |
| CTAGATTGGGTAGAATCACC+AGG | + | chr3.3:11243834-11243853 | None:intergenic | 45.0% | |
| GATTGTGAGGGAGAGAGATT+CGG | + | chr3.3:11246010-11246029 | None:intergenic | 45.0% | |
| GTAAGCCATCCTATGATCAG+TGG | + | chr3.3:11243859-11243878 | None:intergenic | 45.0% | |
| GTGTTTACGCTTCACTTCTC+AGG | - | chr3.3:11244228-11244247 | MS.gene039738:intron | 45.0% | |
| GTTTACGCTTCACTTCTCAG+GGG | - | chr3.3:11244230-11244249 | MS.gene039738:intron | 45.0% | |
| TAGCACCACTGATCATAGGA+TGG | - | chr3.3:11243851-11243870 | MS.gene039738:CDS | 45.0% | |
| TTGGCATCTTTGAGCCTGTT+TGG | + | chr3.3:11247992-11248011 | None:intergenic | 45.0% | |
| TTGGTATTCGGTCAAAGGAC+CGG | - | chr3.3:11244548-11244567 | MS.gene039738:CDS | 45.0% | |
| ! | AACCGAGTTCCTTTAGAAGC+AGG | - | chr3.3:11248502-11248521 | MS.gene039738:CDS | 45.0% |
| ! | GTTCCTTTAGAAGCAGGTAG+AGG | - | chr3.3:11248508-11248527 | MS.gene039738:CDS | 45.0% |
| ! | TAATTTGGAGTACGTCTGGG+AGG | - | chr3.3:11244266-11244285 | MS.gene039738:intron | 45.0% |
| !! | AGATTCGGTGGTGAAAGAGT+AGG | + | chr3.3:11245995-11246014 | None:intergenic | 45.0% |
| !! | CAACTTGTTACATGCAGCCT+TGG | + | chr3.3:11246354-11246373 | None:intergenic | 45.0% |
| !! | CACACTCGAGTTGATTGTGA+GGG | + | chr3.3:11246022-11246041 | None:intergenic | 45.0% |
| !! | GATTCTCTTTGACCGGCTTT+TGG | - | chr3.3:11246528-11246547 | MS.gene039738:intron | 45.0% |
| !! | GTTGCTAGTCTTGGAGTCAT+TGG | - | chr3.3:11246728-11246747 | MS.gene039738:intron | 45.0% |
| !! | ATATTAAATTATATCATATT+AGG | + | chr3.3:11248088-11248107 | None:intergenic | 5.0% |
| !!! | AATATTTTTTTTTTTGTTTA+AGG | - | chr3.3:11245880-11245899 | MS.gene039738:intron | 5.0% |
| CCTCCTCTACCTGCTTCTAA+AGG | + | chr3.3:11248514-11248533 | None:intergenic | 50.0% | |
| TGCTCTCTATGTGCTCTCCA+AGG | - | chr3.3:11243926-11243945 | MS.gene039738:intron | 50.0% | |
| TGGCATCTCACCCTGATACA+AGG | - | chr3.3:11246262-11246281 | MS.gene039738:intron | 50.0% | |
| ! | AGTCATTGGTGGCTCGATGA+AGG | - | chr3.3:11246742-11246761 | MS.gene039738:intron | 50.0% |
| ! | CCTTTAGAAGCAGGTAGAGG+AGG | - | chr3.3:11248511-11248530 | MS.gene039738:CDS | 50.0% |
| !! | GCACACTCGAGTTGATTGTG+AGG | + | chr3.3:11246023-11246042 | None:intergenic | 50.0% |
| !! | GCTAGTCTTGGAGTCATTGG+TGG | - | chr3.3:11246731-11246750 | MS.gene039738:intron | 50.0% |
| AAGCCTCGACAAACGAGGTG+AGG | + | chr3.3:11247809-11247828 | None:intergenic | 55.0% | |
| AGCCTCGACAAACGAGGTGA+GGG | + | chr3.3:11247808-11247827 | None:intergenic | 55.0% | |
| TGTGAGGGAGAGAGATTCGG+TGG | + | chr3.3:11246007-11246026 | None:intergenic | 55.0% | |
| CACCCTCACCTCGTTTGTCG+AGG | - | chr3.3:11247803-11247822 | MS.gene039738:intron | 60.0% | |
| CTCGACAAACGAGGTGAGGG+TGG | + | chr3.3:11247805-11247824 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 11243771 | 11248573 | 11243771 | ID=MS.gene039738 |
| chr3.3 | mRNA | 11243771 | 11248573 | 11243771 | ID=MS.gene039738.t1;Parent=MS.gene039738 |
| chr3.3 | exon | 11248397 | 11248573 | 11248397 | ID=MS.gene039738.t1.exon1;Parent=MS.gene039738.t1 |
| chr3.3 | CDS | 11248397 | 11248573 | 11248397 | ID=cds.MS.gene039738.t1;Parent=MS.gene039738.t1 |
| chr3.3 | exon | 11247025 | 11247096 | 11247025 | ID=MS.gene039738.t1.exon2;Parent=MS.gene039738.t1 |
| chr3.3 | CDS | 11247025 | 11247096 | 11247025 | ID=cds.MS.gene039738.t1;Parent=MS.gene039738.t1 |
| chr3.3 | exon | 11246281 | 11246370 | 11246281 | ID=MS.gene039738.t1.exon3;Parent=MS.gene039738.t1 |
| chr3.3 | CDS | 11246281 | 11246370 | 11246281 | ID=cds.MS.gene039738.t1;Parent=MS.gene039738.t1 |
| chr3.3 | exon | 11246044 | 11246086 | 11246044 | ID=MS.gene039738.t1.exon4;Parent=MS.gene039738.t1 |
| chr3.3 | CDS | 11246044 | 11246086 | 11246044 | ID=cds.MS.gene039738.t1;Parent=MS.gene039738.t1 |
| chr3.3 | exon | 11245581 | 11245687 | 11245581 | ID=MS.gene039738.t1.exon5;Parent=MS.gene039738.t1 |
| chr3.3 | CDS | 11245581 | 11245687 | 11245581 | ID=cds.MS.gene039738.t1;Parent=MS.gene039738.t1 |
| chr3.3 | exon | 11244774 | 11244869 | 11244774 | ID=MS.gene039738.t1.exon6;Parent=MS.gene039738.t1 |
| chr3.3 | CDS | 11244774 | 11244869 | 11244774 | ID=cds.MS.gene039738.t1;Parent=MS.gene039738.t1 |
| chr3.3 | exon | 11244478 | 11244668 | 11244478 | ID=MS.gene039738.t1.exon7;Parent=MS.gene039738.t1 |
| chr3.3 | CDS | 11244478 | 11244668 | 11244478 | ID=cds.MS.gene039738.t1;Parent=MS.gene039738.t1 |
| chr3.3 | exon | 11244314 | 11244383 | 11244314 | ID=MS.gene039738.t1.exon8;Parent=MS.gene039738.t1 |
| chr3.3 | CDS | 11244314 | 11244383 | 11244314 | ID=cds.MS.gene039738.t1;Parent=MS.gene039738.t1 |
| chr3.3 | exon | 11243771 | 11243896 | 11243771 | ID=MS.gene039738.t1.exon9;Parent=MS.gene039738.t1 |
| chr3.3 | CDS | 11243771 | 11243896 | 11243771 | ID=cds.MS.gene039738.t1;Parent=MS.gene039738.t1 |
| Gene Sequence |
| Protein sequence |
