Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03978.t1 | XP_003590850.2 | 49.4 | 621 | 131 | 8 | 1 | 448 | 43 | 653 | 1.60E-137 | 499.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03978.t1 | Q9LUZ4 | 32.4 | 612 | 239 | 16 | 6 | 477 | 30 | 606 | 5.2e-60 | 233.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03978.t1 | G7I4W5 | 49.4 | 621 | 131 | 8 | 1 | 448 | 43 | 653 | 1.2e-137 | 499.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene03978.t1 | TF | C3H |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03978.t1 | MTR_3g464260 | 55.456 | 559 | 104 | 10 | 1 | 478 | 35 | 529 | 0.0 | 522 |
MS.gene03978.t1 | MTR_1g075890 | 52.174 | 621 | 114 | 10 | 1 | 448 | 43 | 653 | 8.97e-174 | 503 |
MS.gene03978.t1 | MTR_3g464280 | 54.298 | 477 | 141 | 10 | 6 | 420 | 32 | 493 | 2.76e-139 | 410 |
MS.gene03978.t1 | MTR_3g464290 | 57.459 | 362 | 111 | 11 | 128 | 464 | 128 | 471 | 5.60e-100 | 308 |
MS.gene03978.t1 | MTR_5g071070 | 40.741 | 459 | 149 | 17 | 129 | 477 | 176 | 621 | 1.43e-80 | 262 |
MS.gene03978.t1 | MTR_5g071070 | 40.741 | 459 | 149 | 17 | 129 | 477 | 258 | 703 | 7.45e-80 | 262 |
MS.gene03978.t1 | MTR_5g071070 | 52.101 | 119 | 34 | 2 | 1 | 96 | 45 | 163 | 5.53e-27 | 115 |
MS.gene03978.t1 | MTR_3g464270 | 46.765 | 340 | 110 | 8 | 129 | 424 | 37 | 349 | 2.25e-77 | 246 |
MS.gene03978.t1 | MTR_5g082830 | 37.862 | 449 | 170 | 16 | 129 | 478 | 245 | 683 | 3.20e-66 | 225 |
MS.gene03978.t1 | MTR_5g082830 | 51.515 | 99 | 46 | 1 | 2 | 98 | 41 | 139 | 1.03e-25 | 111 |
MS.gene03978.t1 | MTR_3g070880 | 31.634 | 569 | 214 | 23 | 2 | 469 | 21 | 515 | 1.55e-58 | 201 |
MS.gene03978.t1 | MTR_7g092070 | 29.808 | 416 | 168 | 16 | 129 | 444 | 292 | 683 | 4.24e-33 | 133 |
MS.gene03978.t1 | MTR_7g092070 | 55.128 | 78 | 35 | 0 | 2 | 79 | 58 | 135 | 9.32e-21 | 95.9 |
MS.gene03978.t1 | MTR_3g029590 | 28.571 | 469 | 187 | 20 | 129 | 478 | 292 | 731 | 7.88e-28 | 117 |
MS.gene03978.t1 | MTR_3g029590 | 48.529 | 68 | 35 | 0 | 14 | 81 | 68 | 135 | 3.93e-14 | 75.5 |
MS.gene03978.t1 | MTR_1g050438 | 41.000 | 100 | 56 | 2 | 2 | 98 | 26 | 125 | 6.58e-16 | 80.9 |
MS.gene03978.t1 | MTR_0728s0020 | 41.000 | 100 | 56 | 2 | 2 | 98 | 42 | 141 | 7.54e-16 | 80.5 |
MS.gene03978.t1 | MTR_3g435680 | 40.426 | 94 | 22 | 1 | 130 | 189 | 180 | 273 | 3.06e-15 | 77.8 |
MS.gene03978.t1 | MTR_1g081420 | 70.833 | 48 | 14 | 0 | 338 | 385 | 181 | 228 | 1.75e-14 | 73.2 |
MS.gene03978.t1 | MTR_6g090380 | 72.973 | 37 | 10 | 0 | 129 | 165 | 131 | 167 | 1.16e-12 | 69.7 |
MS.gene03978.t1 | MTR_8g102100 | 72.973 | 37 | 10 | 0 | 129 | 165 | 109 | 145 | 1.97e-12 | 68.9 |
MS.gene03978.t1 | MTR_3g435590 | 66.667 | 36 | 12 | 0 | 130 | 165 | 267 | 302 | 4.35e-11 | 65.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene03978.t1 | AT2G40140 | 36.735 | 392 | 169 | 14 | 129 | 478 | 242 | 596 | 1.93e-49 | 178 |
MS.gene03978.t1 | AT2G40140 | 55.814 | 86 | 38 | 0 | 5 | 90 | 48 | 133 | 4.79e-25 | 108 |
MS.gene03978.t1 | AT2G40140 | 36.735 | 392 | 169 | 14 | 129 | 478 | 242 | 596 | 1.93e-49 | 178 |
MS.gene03978.t1 | AT2G40140 | 55.814 | 86 | 38 | 0 | 5 | 90 | 48 | 133 | 4.79e-25 | 108 |
MS.gene03978.t1 | AT5G58620 | 35.714 | 406 | 170 | 16 | 129 | 478 | 237 | 607 | 4.07e-49 | 177 |
MS.gene03978.t1 | AT5G58620 | 57.798 | 109 | 44 | 1 | 6 | 114 | 30 | 136 | 1.91e-29 | 122 |
MS.gene03978.t1 | AT3G55980 | 35.787 | 394 | 157 | 19 | 129 | 478 | 239 | 580 | 2.12e-44 | 164 |
MS.gene03978.t1 | AT3G55980 | 55.056 | 89 | 40 | 0 | 2 | 90 | 41 | 129 | 1.02e-24 | 107 |
MS.gene03978.t1 | AT3G55980 | 35.787 | 394 | 157 | 19 | 129 | 478 | 306 | 647 | 6.86e-44 | 164 |
MS.gene03978.t1 | AT3G55980 | 55.056 | 89 | 40 | 0 | 2 | 90 | 108 | 196 | 7.90e-25 | 108 |
MS.gene03978.t1 | AT5G12850 | 31.044 | 364 | 152 | 14 | 129 | 403 | 285 | 638 | 8.92e-34 | 135 |
MS.gene03978.t1 | AT5G12850 | 41.975 | 81 | 45 | 1 | 14 | 92 | 64 | 144 | 8.49e-14 | 74.3 |
MS.gene03978.t1 | AT2G41900 | 37.327 | 217 | 85 | 7 | 129 | 304 | 289 | 495 | 9.49e-28 | 117 |
MS.gene03978.t1 | AT2G41900 | 36.496 | 137 | 81 | 3 | 7 | 138 | 64 | 199 | 8.01e-18 | 87.0 |
MS.gene03978.t1 | AT4G29190 | 36.986 | 146 | 58 | 7 | 129 | 242 | 107 | 250 | 5.32e-13 | 70.9 |
MS.gene03978.t1 | AT2G25900 | 64.865 | 37 | 13 | 0 | 129 | 165 | 118 | 154 | 9.87e-12 | 66.2 |
MS.gene03978.t1 | AT2G25900 | 64.865 | 37 | 13 | 0 | 129 | 165 | 118 | 154 | 9.87e-12 | 66.2 |
MS.gene03978.t1 | AT2G19810 | 64.865 | 37 | 13 | 0 | 129 | 165 | 106 | 142 | 2.66e-11 | 65.5 |
Find 120 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAAATGCAATTTCATAATT+TGG | 0.085620 | 3.2:+54769502 | MS.gene03978:CDS |
GCTCTTCATTGTGTTGTTTC+TGG | 0.131848 | 3.2:+54768025 | MS.gene03978:CDS |
CTTATGGTTTCTGCCTTATT+TGG | 0.186884 | 3.2:+54767923 | MS.gene03978:CDS |
CTTACCAATTCAAATGTTAT+TGG | 0.199131 | 3.2:+54769119 | MS.gene03978:CDS |
TTCACAGATGTTGTTGAAAA+AGG | 0.211504 | 3.2:+54767818 | MS.gene03978:CDS |
TTCTTCTAAATTCTCTGGTT+GGG | 0.255630 | 3.2:+54769256 | MS.gene03978:CDS |
GGTGTCCTGTCTTATATTAT+TGG | 0.263939 | 3.2:+54767953 | MS.gene03978:CDS |
GACACCCTTGCTTCCAAATA+AGG | 0.305473 | 3.2:-54767936 | None:intergenic |
ATGAGGAAATCTTATTCTTT+CGG | 0.306520 | 3.2:+54769332 | MS.gene03978:CDS |
GTGTCCCTTGCCCCGACTTT+CGG | 0.317518 | 3.2:+54768475 | MS.gene03978:CDS |
TCTCCTTCAAATAGGCTTGC+AGG | 0.328651 | 3.2:+54768987 | MS.gene03978:CDS |
TATTCATCAAATTCAATTGC+TGG | 0.345540 | 3.2:-54769467 | None:intergenic |
TGAAGAGAGGACACCTCTTA+TGG | 0.347611 | 3.2:+54767907 | MS.gene03978:CDS |
GTCTTTCATCTCCTTCAAAT+AGG | 0.348830 | 3.2:+54768979 | MS.gene03978:CDS |
ATGGATTCTTCTAAATTCTC+TGG | 0.358958 | 3.2:+54769251 | MS.gene03978:CDS |
GAGGGTTGGATCGAAGGAAA+TGG | 0.360734 | 3.2:+54767880 | MS.gene03978:CDS |
CTTGTAGCAGCTCCACCATT+TGG | 0.370368 | 3.2:-54768236 | None:intergenic |
GTCATCTTCATCGGTTGAAC+AGG | 0.377951 | 3.2:-54768169 | None:intergenic |
TTTCTTGGCATCTGAAGAGC+TGG | 0.379566 | 3.2:-54768861 | None:intergenic |
CATGATCCCTTCCGAAAGTC+GGG | 0.387890 | 3.2:-54768486 | None:intergenic |
TGATCCAATAACATTTGAAT+TGG | 0.388637 | 3.2:-54769123 | None:intergenic |
TGACACTGACAATATTCTTA+AGG | 0.391698 | 3.2:+54768203 | MS.gene03978:CDS |
TTGTGCTACCTCACTTGCTA+TGG | 0.408316 | 3.2:+54769232 | MS.gene03978:CDS |
CTGTCTTATATTATTGGAAC+CGG | 0.409250 | 3.2:+54767959 | MS.gene03978:CDS |
AAGGATAGACCCAGAGTTGA+TGG | 0.417953 | 3.2:-54769091 | None:intergenic |
AGGGTTGGATCGAAGGAAAT+GGG | 0.426387 | 3.2:+54767881 | MS.gene03978:CDS |
TTCTGCCTTATTTGGAAGCA+AGG | 0.427911 | 3.2:+54767931 | MS.gene03978:CDS |
ATTCTTCTAAATTCTCTGGT+TGG | 0.432619 | 3.2:+54769255 | MS.gene03978:CDS |
GACAATATTCTTAAGGAAGC+AGG | 0.436071 | 3.2:+54768210 | MS.gene03978:CDS |
TCTGGTTGGGGCTCCCCTGA+TGG | 0.438236 | 3.2:+54769269 | MS.gene03978:CDS |
TCTTCTAAATTCTCTGGTTG+GGG | 0.439130 | 3.2:+54769257 | MS.gene03978:CDS |
CCGTCATTAACTTCCGCATA+AGG | 0.448177 | 3.2:-54768944 | None:intergenic |
GGATGTGGTTCCGTCTTGGC+CGG | 0.449239 | 3.2:+54769523 | MS.gene03978:CDS |
ACTCCTGCAAGCCTATTTGA+AGG | 0.456472 | 3.2:-54768990 | None:intergenic |
TTCACCTAGTTCTTCTTCAT+CGG | 0.461261 | 3.2:+54768707 | MS.gene03978:CDS |
TTATGGTATGGAAGGAGGGT+TGG | 0.464678 | 3.2:+54767866 | MS.gene03978:CDS |
CAGGTATAATGATATTTCCT+TGG | 0.467024 | 3.2:-54768453 | None:intergenic |
ACCGAGTATGCGGCTCAGAT+AGG | 0.470269 | 3.2:+54767996 | MS.gene03978:CDS |
CCCTATCTGAGCCGCATACT+CGG | 0.473108 | 3.2:-54767997 | None:intergenic |
TGGAAGGAGGGTTGGATCGA+AGG | 0.473211 | 3.2:+54767874 | MS.gene03978:CDS |
ATTGAGTTCATCGCCGCGGA+TGG | 0.473676 | 3.2:-54769306 | None:intergenic |
ATTTGGATGTGGTTCCGTCT+TGG | 0.475264 | 3.2:+54769519 | MS.gene03978:CDS |
GCAGCATCATCGCCTACGGC+TGG | 0.487982 | 3.2:+54768798 | MS.gene03978:CDS |
CGACCGTTGTATGCTTCTAC+CGG | 0.490079 | 3.2:+54768651 | MS.gene03978:CDS |
CCCTTGCCCCGACTTTCGGA+AGG | 0.498336 | 3.2:+54768479 | MS.gene03978:CDS |
GCAATTTCATAATTTGGATG+TGG | 0.499012 | 3.2:+54769508 | MS.gene03978:CDS |
CCCTTCCGAAAGTCGGGGCA+AGG | 0.501706 | 3.2:-54768480 | None:intergenic |
AGGTGAAGGCAAAGCAGAAC+CGG | 0.502979 | 3.2:-54768670 | None:intergenic |
TTCTTGGCATCTGAAGAGCT+GGG | 0.503638 | 3.2:-54768860 | None:intergenic |
AGAACACGAACCATCAACTC+TGG | 0.504443 | 3.2:+54769081 | MS.gene03978:CDS |
GCATGATCCCTTCCGAAAGT+CGG | 0.505621 | 3.2:-54768487 | None:intergenic |
CCGAGTATGCGGCTCAGATA+GGG | 0.516581 | 3.2:+54767997 | MS.gene03978:CDS |
AACATAAAAGTCATCTTCAT+CGG | 0.518216 | 3.2:-54768178 | None:intergenic |
TGGGGTTAATTCACTTGTGA+AGG | 0.518540 | 3.2:+54769436 | MS.gene03978:CDS |
TTTGAATTGGTAAGATCAGA+AGG | 0.519210 | 3.2:-54769110 | None:intergenic |
TAGGGTTATGGTATGGAAGG+AGG | 0.528404 | 3.2:+54767861 | MS.gene03978:CDS |
TGCTTCATGTACAGTTGCTC+CGG | 0.529190 | 3.2:-54769542 | None:intergenic |
AATAAGGCAGAAACCATAAG+AGG | 0.534423 | 3.2:-54767920 | None:intergenic |
AAAGTCGGGGCAAGGGACAC+AGG | 0.535861 | 3.2:-54768472 | None:intergenic |
AGGGTTATGGTATGGAAGGA+GGG | 0.536148 | 3.2:+54767862 | MS.gene03978:CDS |
TAAGGAAGCAGGTTTCCAAA+TGG | 0.540705 | 3.2:+54768221 | MS.gene03978:CDS |
TCTGCCTTATTTGGAAGCAA+GGG | 0.541989 | 3.2:+54767932 | MS.gene03978:CDS |
ATGCAAAGCGCCGTGATCCA+AGG | 0.543626 | 3.2:+54768436 | MS.gene03978:CDS |
AACATGATGTTGATGAGGTA+GGG | 0.544918 | 3.2:+54767843 | MS.gene03978:CDS |
CCCCTGATGGAAAATTAGAC+TGG | 0.548612 | 3.2:+54769282 | MS.gene03978:CDS |
GTCGTTCTGCACTTCTGCTG+AGG | 0.549073 | 3.2:+54768047 | MS.gene03978:CDS |
GGAGCAACTGTACATGAAGC+AGG | 0.554715 | 3.2:+54769544 | MS.gene03978:CDS |
ATGTTGATGAGGTAGGGTTA+TGG | 0.554961 | 3.2:+54767849 | MS.gene03978:CDS |
GCAGATGGAGTCAAAGGTGG+CGG | 0.558024 | 3.2:-54768777 | None:intergenic |
GGTGAATTCGAATATGATGT+AGG | 0.560129 | 3.2:-54768690 | None:intergenic |
GGAAGCAGGTTTCCAAATGG+TGG | 0.560340 | 3.2:+54768224 | MS.gene03978:CDS |
ATCTGCAGCATCATCGCCTA+CGG | 0.562339 | 3.2:+54768794 | MS.gene03978:CDS |
CAGAAGTAGCACTTCAACAA+TGG | 0.563136 | 3.2:+54769364 | MS.gene03978:CDS |
AATGATATTTCCTTGGATCA+CGG | 0.568390 | 3.2:-54768446 | None:intergenic |
GTGGAGCTGCTACAAGATGC+AGG | 0.572446 | 3.2:+54768243 | MS.gene03978:CDS |
GAACATGATGTTGATGAGGT+AGG | 0.574038 | 3.2:+54767842 | MS.gene03978:CDS |
AGACTTAAAGCTTGCCACGC+TGG | 0.574936 | 3.2:-54769201 | None:intergenic |
TTCGAATATGATGTAGGTGA+AGG | 0.575873 | 3.2:-54768684 | None:intergenic |
CGGAAGGGATCATGCAGCAA+AGG | 0.575933 | 3.2:+54768495 | MS.gene03978:CDS |
CCTTGCCCCGACTTTCGGAA+GGG | 0.578605 | 3.2:+54768480 | MS.gene03978:CDS |
GCTCTCGCTCCGCTTTGTGA+TGG | 0.581388 | 3.2:-54769165 | None:intergenic |
GTACATGAAGCAGGAGCAGA+TGG | 0.582689 | 3.2:+54769553 | MS.gene03978:CDS |
AGAAGAATCCATAGCAAGTG+AGG | 0.583861 | 3.2:-54769240 | None:intergenic |
TACAGTTGCTCCGGCCAAGA+CGG | 0.585751 | 3.2:-54769533 | None:intergenic |
CGGTTCCAATAATATAAGAC+AGG | 0.589189 | 3.2:-54767958 | None:intergenic |
GAACACGAACCATCAACTCT+GGG | 0.593605 | 3.2:+54769082 | MS.gene03978:CDS |
TCGGTTAACATCTACACGAC+CGG | 0.594422 | 3.2:-54767978 | None:intergenic |
CTTATGCGGAAGTTAATGAC+GGG | 0.596514 | 3.2:+54768945 | MS.gene03978:CDS |
AGGTAGGGTTATGGTATGGA+AGG | 0.598568 | 3.2:+54767858 | MS.gene03978:CDS |
CCTTCCGAAAGTCGGGGCAA+GGG | 0.599933 | 3.2:-54768479 | None:intergenic |
GTAGGCGATGATGCTGCAGA+TGG | 0.600318 | 3.2:-54768792 | None:intergenic |
TGCCACATGGTTCCAGCCGT+AGG | 0.601454 | 3.2:-54768810 | None:intergenic |
CCTTATGCGGAAGTTAATGA+CGG | 0.602861 | 3.2:+54768944 | MS.gene03978:CDS |
GTGTAGCGACTTAATTGTCT+CGG | 0.604680 | 3.2:+54768131 | MS.gene03978:intron |
GATGAGGTAGGGTTATGGTA+TGG | 0.604921 | 3.2:+54767854 | MS.gene03978:CDS |
GCGATGAACTCAATAAAATG+AGG | 0.608002 | 3.2:+54769315 | MS.gene03978:CDS |
GCGGAAGTTAATGACGGGAG+AGG | 0.608895 | 3.2:+54768950 | MS.gene03978:CDS |
GTGTTCTGATGCGACTGCAT+TGG | 0.609359 | 3.2:-54769065 | None:intergenic |
TAATCCGATGAAGAAGAACT+AGG | 0.616056 | 3.2:-54768711 | None:intergenic |
AGGCGAACATGATGTTGATG+AGG | 0.616849 | 3.2:+54767838 | MS.gene03978:CDS |
TGATGCGACTGCATTGGTGT+CGG | 0.622152 | 3.2:-54769059 | None:intergenic |
GCAGATTGTGTCAAATAAGA+CGG | 0.628556 | 3.2:-54768750 | None:intergenic |
AACATGAAAATCTCCTTATG+CGG | 0.633353 | 3.2:+54768931 | MS.gene03978:CDS |
CCGAGTCTGAGTCTGCCACA+TGG | 0.648294 | 3.2:-54768823 | None:intergenic |
AGGAAATGGGATATGAAGAG+AGG | 0.649200 | 3.2:+54767894 | MS.gene03978:CDS |
GATGCTGCAGATGGAGTCAA+AGG | 0.650089 | 3.2:-54768783 | None:intergenic |
GTAGATGTTAACCGAGTATG+CGG | 0.658936 | 3.2:+54767986 | MS.gene03978:CDS |
CTTTATTGAGCGCACCAGCG+TGG | 0.660917 | 3.2:+54769187 | MS.gene03978:CDS |
AAATTAGACTGGTCCATCCG+CGG | 0.660945 | 3.2:+54769293 | MS.gene03978:CDS |
CCATGTGGCAGACTCAGACT+CGG | 0.670671 | 3.2:+54768823 | MS.gene03978:CDS |
ATGATCCCTTCCGAAAGTCG+GGG | 0.672164 | 3.2:-54768485 | None:intergenic |
AAGTAGCACTTCAACAATGG+TGG | 0.674338 | 3.2:+54769367 | MS.gene03978:CDS |
CGCCTACGGCTGGAACCATG+TGG | 0.694097 | 3.2:+54768808 | MS.gene03978:CDS |
GCTGCAGATGGAGTCAAAGG+TGG | 0.696337 | 3.2:-54768780 | None:intergenic |
ATAGCAAGTGAGGTAGCACA+AGG | 0.698315 | 3.2:-54769230 | None:intergenic |
ATGGCATCAACTCTTAATTG+TGG | 0.699766 | 3.2:-54769146 | None:intergenic |
CATGAAGCAGGAGCAGATGG+TGG | 0.702473 | 3.2:+54769556 | MS.gene03978:CDS |
GAGTTGATGCCATCACAAAG+CGG | 0.725373 | 3.2:+54769156 | MS.gene03978:CDS |
GATGCTTGTGAATATGCACA+TGG | 0.757069 | 3.2:+54768519 | MS.gene03978:CDS |
GAACCGGTAGAAGCATACAA+CGG | 0.780700 | 3.2:-54768654 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATATAGTACAAATGAATTT+AGG | + | chr3.2:54768331-54768350 | MS.gene03978:intron | 15.0% |
!! | TCAAATGCAATTTCATAATT+TGG | + | chr3.2:54769502-54769521 | MS.gene03978:CDS | 20.0% |
!!! | ATGATCCTGATATTTTTTTA+AGG | + | chr3.2:54769405-54769424 | MS.gene03978:CDS | 20.0% |
! | AACATAAAAGTCATCTTCAT+CGG | - | chr3.2:54768181-54768200 | None:intergenic | 25.0% |
! | ATGAGGAAATCTTATTCTTT+CGG | + | chr3.2:54769332-54769351 | MS.gene03978:CDS | 25.0% |
! | CTTACCAATTCAAATGTTAT+TGG | + | chr3.2:54769119-54769138 | MS.gene03978:CDS | 25.0% |
! | TATATCCCATTATTTATCTC+AGG | - | chr3.2:54768315-54768334 | None:intergenic | 25.0% |
! | TATTCATCAAATTCAATTGC+TGG | - | chr3.2:54769470-54769489 | None:intergenic | 25.0% |
! | TCTTGCCTTAAAAAAATATC+AGG | - | chr3.2:54769413-54769432 | None:intergenic | 25.0% |
! | TGATCCAATAACATTTGAAT+TGG | - | chr3.2:54769126-54769145 | None:intergenic | 25.0% |
!!! | ATTTTTTTAAGGCAAGAAAC+TGG | + | chr3.2:54769416-54769435 | MS.gene03978:CDS | 25.0% |
!!! | CACATGGTATTTTTTAATGT+TGG | + | chr3.2:54768535-54768554 | MS.gene03978:intron | 25.0% |
!!! | TTTTTTTAAGGCAAGAAACT+GGG | + | chr3.2:54769417-54769436 | MS.gene03978:CDS | 25.0% |
AACATGAAAATCTCCTTATG+CGG | + | chr3.2:54768931-54768950 | MS.gene03978:CDS | 30.0% | |
AATGATATTTCCTTGGATCA+CGG | - | chr3.2:54768449-54768468 | None:intergenic | 30.0% | |
ATGGATTCTTCTAAATTCTC+TGG | + | chr3.2:54769251-54769270 | MS.gene03978:CDS | 30.0% | |
ATTCTTCTAAATTCTCTGGT+TGG | + | chr3.2:54769255-54769274 | MS.gene03978:CDS | 30.0% | |
CAGGTATAATGATATTTCCT+TGG | - | chr3.2:54768456-54768475 | None:intergenic | 30.0% | |
CTGTCTTATATTATTGGAAC+CGG | + | chr3.2:54767959-54767978 | MS.gene03978:CDS | 30.0% | |
GCAATTTCATAATTTGGATG+TGG | + | chr3.2:54769508-54769527 | MS.gene03978:CDS | 30.0% | |
TGACACTGACAATATTCTTA+AGG | + | chr3.2:54768203-54768222 | MS.gene03978:CDS | 30.0% | |
TTCACAGATGTTGTTGAAAA+AGG | + | chr3.2:54767818-54767837 | MS.gene03978:CDS | 30.0% | |
TTCTTCTAAATTCTCTGGTT+GGG | + | chr3.2:54769256-54769275 | MS.gene03978:CDS | 30.0% | |
TTTGAATTGGTAAGATCAGA+AGG | - | chr3.2:54769113-54769132 | None:intergenic | 30.0% | |
! | CTAACCTTGAAAACATTTTC+GGG | + | chr3.2:54769021-54769040 | MS.gene03978:CDS | 30.0% |
! | GCTAACCTTGAAAACATTTT+CGG | + | chr3.2:54769020-54769039 | MS.gene03978:CDS | 30.0% |
!! | AAAATGTTTTCAAGGTTAGC+GGG | - | chr3.2:54769020-54769039 | None:intergenic | 30.0% |
!! | GAAAATGTTTTCAAGGTTAG+CGG | - | chr3.2:54769021-54769040 | None:intergenic | 30.0% |
!!! | TTTTTTAAGGCAAGAAACTG+GGG | + | chr3.2:54769418-54769437 | MS.gene03978:CDS | 30.0% |
AATAAGGCAGAAACCATAAG+AGG | - | chr3.2:54767923-54767942 | None:intergenic | 35.0% | |
ATGGCATCAACTCTTAATTG+TGG | - | chr3.2:54769149-54769168 | None:intergenic | 35.0% | |
CCCATTATTTATCTCAGGAA+GGG | - | chr3.2:54768310-54768329 | None:intergenic | 35.0% | |
CCCTTCCTGAGATAAATAAT+GGG | + | chr3.2:54768307-54768326 | MS.gene03978:intron | 35.0% | |
CGGTTCCAATAATATAAGAC+AGG | - | chr3.2:54767961-54767980 | None:intergenic | 35.0% | |
GACAATATTCTTAAGGAAGC+AGG | + | chr3.2:54768210-54768229 | MS.gene03978:CDS | 35.0% | |
GCAGATTGTGTCAAATAAGA+CGG | - | chr3.2:54768753-54768772 | None:intergenic | 35.0% | |
GCGATGAACTCAATAAAATG+AGG | + | chr3.2:54769315-54769334 | MS.gene03978:CDS | 35.0% | |
GGTGAATTCGAATATGATGT+AGG | - | chr3.2:54768693-54768712 | None:intergenic | 35.0% | |
GGTGTCCTGTCTTATATTAT+TGG | + | chr3.2:54767953-54767972 | MS.gene03978:CDS | 35.0% | |
GTCTTTCATCTCCTTCAAAT+AGG | + | chr3.2:54768979-54768998 | MS.gene03978:CDS | 35.0% | |
TAATCCGATGAAGAAGAACT+AGG | - | chr3.2:54768714-54768733 | None:intergenic | 35.0% | |
TCCCATTATTTATCTCAGGA+AGG | - | chr3.2:54768311-54768330 | None:intergenic | 35.0% | |
TCCCTTCCTGAGATAAATAA+TGG | + | chr3.2:54768306-54768325 | MS.gene03978:intron | 35.0% | |
TCTTCTAAATTCTCTGGTTG+GGG | + | chr3.2:54769257-54769276 | MS.gene03978:CDS | 35.0% | |
TTCGAATATGATGTAGGTGA+AGG | - | chr3.2:54768687-54768706 | None:intergenic | 35.0% | |
! | AACATGATGTTGATGAGGTA+GGG | + | chr3.2:54767843-54767862 | MS.gene03978:CDS | 35.0% |
! | ACCAGTCTAATTTTCCATCA+GGG | - | chr3.2:54769286-54769305 | None:intergenic | 35.0% |
! | ATGACCCGAAAATGTTTTCA+AGG | - | chr3.2:54769028-54769047 | None:intergenic | 35.0% |
! | CTTATGGTTTCTGCCTTATT+TGG | + | chr3.2:54767923-54767942 | MS.gene03978:CDS | 35.0% |
! | TTCACCTAGTTCTTCTTCAT+CGG | + | chr3.2:54768707-54768726 | MS.gene03978:CDS | 35.0% |
!! | GCAGTTTTCAATCTGTTTCT+TGG | - | chr3.2:54768879-54768898 | None:intergenic | 35.0% |
AAGTAGCACTTCAACAATGG+TGG | + | chr3.2:54769367-54769386 | MS.gene03978:CDS | 40.0% | |
AGAAGAATCCATAGCAAGTG+AGG | - | chr3.2:54769243-54769262 | None:intergenic | 40.0% | |
AGACAATTAAGTCGCTACAC+CGG | - | chr3.2:54768131-54768150 | None:intergenic | 40.0% | |
AGGAAATGGGATATGAAGAG+AGG | + | chr3.2:54767894-54767913 | MS.gene03978:CDS | 40.0% | |
ATACAGAACAAGGCTTTGCA+CGG | + | chr3.2:54768572-54768591 | MS.gene03978:intron | 40.0% | |
ATCCTGCTCAATACAGAACA+AGG | + | chr3.2:54768562-54768581 | MS.gene03978:intron | 40.0% | |
CAAGGGCTTATTCTCATGAT+TGG | + | chr3.2:54768382-54768401 | MS.gene03978:intron | 40.0% | |
CAGAAGTAGCACTTCAACAA+TGG | + | chr3.2:54769364-54769383 | MS.gene03978:CDS | 40.0% | |
CCTTATGCGGAAGTTAATGA+CGG | + | chr3.2:54768944-54768963 | MS.gene03978:CDS | 40.0% | |
CTTATGCGGAAGTTAATGAC+GGG | + | chr3.2:54768945-54768964 | MS.gene03978:CDS | 40.0% | |
GATGCTTGTGAATATGCACA+TGG | + | chr3.2:54768519-54768538 | MS.gene03978:CDS | 40.0% | |
GTAGATGTTAACCGAGTATG+CGG | + | chr3.2:54767986-54768005 | MS.gene03978:CDS | 40.0% | |
GTGTAGCGACTTAATTGTCT+CGG | + | chr3.2:54768131-54768150 | MS.gene03978:intron | 40.0% | |
TAAGGAAGCAGGTTTCCAAA+TGG | + | chr3.2:54768221-54768240 | MS.gene03978:CDS | 40.0% | |
TCAGGAAGGGATCAATCAAT+CGG | - | chr3.2:54768297-54768316 | None:intergenic | 40.0% | |
TGAGAATAAGCCCTTGAACA+AGG | - | chr3.2:54768378-54768397 | None:intergenic | 40.0% | |
TGGGGTTAATTCACTTGTGA+AGG | + | chr3.2:54769436-54769455 | MS.gene03978:CDS | 40.0% | |
! | ATGTTGATGAGGTAGGGTTA+TGG | + | chr3.2:54767849-54767868 | MS.gene03978:CDS | 40.0% |
! | ATTTTCCCCTGGATGAACAA+AGG | - | chr3.2:54768418-54768437 | None:intergenic | 40.0% |
! | CCAGTCTAATTTTCCATCAG+GGG | - | chr3.2:54769285-54769304 | None:intergenic | 40.0% |
! | GAACATGATGTTGATGAGGT+AGG | + | chr3.2:54767842-54767861 | MS.gene03978:CDS | 40.0% |
! | GACCAGTCTAATTTTCCATC+AGG | - | chr3.2:54769287-54769306 | None:intergenic | 40.0% |
! | TTTTATTGAGTTCATCGCCG+CGG | - | chr3.2:54769313-54769332 | None:intergenic | 40.0% |
! | TTTTCCCCTGGATGAACAAA+GGG | - | chr3.2:54768417-54768436 | None:intergenic | 40.0% |
!! | CAAAGTGAAGCCTTGTTCAA+GGG | + | chr3.2:54768365-54768384 | MS.gene03978:intron | 40.0% |
!! | GCTCTTCATTGTGTTGTTTC+TGG | + | chr3.2:54768025-54768044 | MS.gene03978:CDS | 40.0% |
!! | TCAAAGTGAAGCCTTGTTCA+AGG | + | chr3.2:54768364-54768383 | MS.gene03978:intron | 40.0% |
!! | TCTGCCTTATTTGGAAGCAA+GGG | + | chr3.2:54767932-54767951 | MS.gene03978:CDS | 40.0% |
!! | TTCTGCCTTATTTGGAAGCA+AGG | + | chr3.2:54767931-54767950 | MS.gene03978:CDS | 40.0% |
AAGGATAGACCCAGAGTTGA+TGG | - | chr3.2:54769094-54769113 | None:intergenic | 45.0% | |
ACTCCTGCAAGCCTATTTGA+AGG | - | chr3.2:54768993-54769012 | None:intergenic | 45.0% | |
AGAACACGAACCATCAACTC+TGG | + | chr3.2:54769081-54769100 | MS.gene03978:CDS | 45.0% | |
AGGCGAACATGATGTTGATG+AGG | + | chr3.2:54767838-54767857 | MS.gene03978:CDS | 45.0% | |
AGGGTTATGGTATGGAAGGA+GGG | + | chr3.2:54767862-54767881 | MS.gene03978:CDS | 45.0% | |
AGGGTTGGATCGAAGGAAAT+GGG | + | chr3.2:54767881-54767900 | MS.gene03978:CDS | 45.0% | |
AGGTAGGGTTATGGTATGGA+AGG | + | chr3.2:54767858-54767877 | MS.gene03978:CDS | 45.0% | |
AGTGTCCCTTTGTTCATCCA+GGG | + | chr3.2:54768409-54768428 | MS.gene03978:intron | 45.0% | |
ATAGCAAGTGAGGTAGCACA+AGG | - | chr3.2:54769233-54769252 | None:intergenic | 45.0% | |
ATTTGGATGTGGTTCCGTCT+TGG | + | chr3.2:54769519-54769538 | MS.gene03978:CDS | 45.0% | |
CCCCTGATGGAAAATTAGAC+TGG | + | chr3.2:54769282-54769301 | MS.gene03978:CDS | 45.0% | |
CCGTCATTAACTTCCGCATA+AGG | - | chr3.2:54768947-54768966 | None:intergenic | 45.0% | |
GAACACGAACCATCAACTCT+GGG | + | chr3.2:54769082-54769101 | MS.gene03978:CDS | 45.0% | |
GACACCCTTGCTTCCAAATA+AGG | - | chr3.2:54767939-54767958 | None:intergenic | 45.0% | |
GATGAGGTAGGGTTATGGTA+TGG | + | chr3.2:54767854-54767873 | MS.gene03978:CDS | 45.0% | |
TAGGGTTATGGTATGGAAGG+AGG | + | chr3.2:54767861-54767880 | MS.gene03978:CDS | 45.0% | |
TCGGTTAACATCTACACGAC+CGG | - | chr3.2:54767981-54768000 | None:intergenic | 45.0% | |
TCTCCTTCAAATAGGCTTGC+AGG | + | chr3.2:54768987-54769006 | MS.gene03978:CDS | 45.0% | |
TGAAGAGAGGACACCTCTTA+TGG | + | chr3.2:54767907-54767926 | MS.gene03978:CDS | 45.0% | |
TGCTTCATGTACAGTTGCTC+CGG | - | chr3.2:54769545-54769564 | None:intergenic | 45.0% | |
TGGATGAACAAAGGGACACT+CGG | - | chr3.2:54768409-54768428 | None:intergenic | 45.0% | |
TTATGGTATGGAAGGAGGGT+TGG | + | chr3.2:54767866-54767885 | MS.gene03978:CDS | 45.0% | |
TTCTTGGCATCTGAAGAGCT+GGG | - | chr3.2:54768863-54768882 | None:intergenic | 45.0% | |
TTTCTTGGCATCTGAAGAGC+TGG | - | chr3.2:54768864-54768883 | None:intergenic | 45.0% | |
! | AAATTAGACTGGTCCATCCG+CGG | + | chr3.2:54769293-54769312 | MS.gene03978:CDS | 45.0% |
! | GAACCGGTAGAAGCATACAA+CGG | - | chr3.2:54768657-54768676 | None:intergenic | 45.0% |
! | GCTTTTGCTTGATGCATCTG+CGG | + | chr3.2:54768077-54768096 | MS.gene03978:intron | 45.0% |
! | GTCATCTTCATCGGTTGAAC+AGG | - | chr3.2:54768172-54768191 | None:intergenic | 45.0% |
! | TTGTGCTACCTCACTTGCTA+TGG | + | chr3.2:54769232-54769251 | MS.gene03978:CDS | 45.0% |
!! | AGCCTTGTTCTGTATTGAGC+AGG | - | chr3.2:54768567-54768586 | None:intergenic | 45.0% |
!! | GAGTTGATGCCATCACAAAG+CGG | + | chr3.2:54769156-54769175 | MS.gene03978:CDS | 45.0% |
AGAACAAGGCTTTGCACGGA+TGG | + | chr3.2:54768576-54768595 | MS.gene03978:intron | 50.0% | |
AGACTTAAAGCTTGCCACGC+TGG | - | chr3.2:54769204-54769223 | None:intergenic | 50.0% | |
AGGCTTTGCACGGATGGAAT+CGG | + | chr3.2:54768582-54768601 | MS.gene03978:intron | 50.0% | |
AGGTGAAGGCAAAGCAGAAC+CGG | - | chr3.2:54768673-54768692 | None:intergenic | 50.0% | |
ATCTGCAGCATCATCGCCTA+CGG | + | chr3.2:54768794-54768813 | MS.gene03978:CDS | 50.0% | |
ATGATCCCTTCCGAAAGTCG+GGG | - | chr3.2:54768488-54768507 | None:intergenic | 50.0% | |
CATGATCCCTTCCGAAAGTC+GGG | - | chr3.2:54768489-54768508 | None:intergenic | 50.0% | |
CGACCGTTGTATGCTTCTAC+CGG | + | chr3.2:54768651-54768670 | MS.gene03978:CDS | 50.0% | |
CTGTTGTTGCGAATGGCAAC+CGG | + | chr3.2:54768109-54768128 | MS.gene03978:intron | 50.0% | |
CTTGTAGCAGCTCCACCATT+TGG | - | chr3.2:54768239-54768258 | None:intergenic | 50.0% | |
GAGGGTTGGATCGAAGGAAA+TGG | + | chr3.2:54767880-54767899 | MS.gene03978:CDS | 50.0% | |
GAGTGTCCCTTTGTTCATCC+AGG | + | chr3.2:54768408-54768427 | MS.gene03978:intron | 50.0% | |
GATGCTGCAGATGGAGTCAA+AGG | - | chr3.2:54768786-54768805 | None:intergenic | 50.0% | |
GCATGATCCCTTCCGAAAGT+CGG | - | chr3.2:54768490-54768509 | None:intergenic | 50.0% | |
GGAAGCAGGTTTCCAAATGG+TGG | + | chr3.2:54768224-54768243 | MS.gene03978:CDS | 50.0% | |
GGAGCAACTGTACATGAAGC+AGG | + | chr3.2:54769544-54769563 | MS.gene03978:CDS | 50.0% | |
GTACATGAAGCAGGAGCAGA+TGG | + | chr3.2:54769553-54769572 | MS.gene03978:CDS | 50.0% | |
GTGTCCCTTTGTTCATCCAG+GGG | + | chr3.2:54768410-54768429 | MS.gene03978:intron | 50.0% | |
GTGTTCTGATGCGACTGCAT+TGG | - | chr3.2:54769068-54769087 | None:intergenic | 50.0% | |
TACAACGGTCGAAGCTCATC+TGG | - | chr3.2:54768642-54768661 | None:intergenic | 50.0% | |
TTGCTTGATGCATCTGCGGA+TGG | + | chr3.2:54768081-54768100 | MS.gene03978:intron | 50.0% | |
! | GGTAGCTCTGTTGTTGCGAA+TGG | + | chr3.2:54768102-54768121 | MS.gene03978:intron | 50.0% |
! | TGATGCGACTGCATTGGTGT+CGG | - | chr3.2:54769062-54769081 | None:intergenic | 50.0% |
ACCGAGTATGCGGCTCAGAT+AGG | + | chr3.2:54767996-54768015 | MS.gene03978:CDS | 55.0% | |
ATGGAATCGGGCGTACAAGG+AGG | + | chr3.2:54768595-54768614 | MS.gene03978:intron | 55.0% | |
ATTGAGTTCATCGCCGCGGA+TGG | - | chr3.2:54769309-54769328 | None:intergenic | 55.0% | |
CATGAAGCAGGAGCAGATGG+TGG | + | chr3.2:54769556-54769575 | MS.gene03978:CDS | 55.0% | |
CCATGTGGCAGACTCAGACT+CGG | + | chr3.2:54768823-54768842 | MS.gene03978:CDS | 55.0% | |
CCCTATCTGAGCCGCATACT+CGG | - | chr3.2:54768000-54768019 | None:intergenic | 55.0% | |
CCGAGTATGCGGCTCAGATA+GGG | + | chr3.2:54767997-54768016 | MS.gene03978:CDS | 55.0% | |
CGGAAGGGATCATGCAGCAA+AGG | + | chr3.2:54768495-54768514 | MS.gene03978:CDS | 55.0% | |
CTTTATTGAGCGCACCAGCG+TGG | + | chr3.2:54769187-54769206 | MS.gene03978:CDS | 55.0% | |
GCAGATGGAGTCAAAGGTGG+CGG | - | chr3.2:54768780-54768799 | None:intergenic | 55.0% | |
GCTGCAGATGGAGTCAAAGG+TGG | - | chr3.2:54768783-54768802 | None:intergenic | 55.0% | |
GGCTTTGCACGGATGGAATC+GGG | + | chr3.2:54768583-54768602 | MS.gene03978:intron | 55.0% | |
GTAGGCGATGATGCTGCAGA+TGG | - | chr3.2:54768795-54768814 | None:intergenic | 55.0% | |
GTCGTTCTGCACTTCTGCTG+AGG | + | chr3.2:54768047-54768066 | MS.gene03978:CDS | 55.0% | |
GTGGAGCTGCTACAAGATGC+AGG | + | chr3.2:54768243-54768262 | MS.gene03978:CDS | 55.0% | |
TACAGTTGCTCCGGCCAAGA+CGG | - | chr3.2:54769536-54769555 | None:intergenic | 55.0% | |
TGGAAGGAGGGTTGGATCGA+AGG | + | chr3.2:54767874-54767893 | MS.gene03978:CDS | 55.0% | |
TGGAATCGGGCGTACAAGGA+GGG | + | chr3.2:54768596-54768615 | MS.gene03978:intron | 55.0% | |
! | GCGGAAGTTAATGACGGGAG+AGG | + | chr3.2:54768950-54768969 | MS.gene03978:CDS | 55.0% |
!! | ATGCAAAGCGCCGTGATCCA+AGG | + | chr3.2:54768436-54768455 | MS.gene03978:CDS | 55.0% |
AAAGTCGGGGCAAGGGACAC+AGG | - | chr3.2:54768475-54768494 | None:intergenic | 60.0% | |
CCGAGTCTGAGTCTGCCACA+TGG | - | chr3.2:54768826-54768845 | None:intergenic | 60.0% | |
CCTTCCGAAAGTCGGGGCAA+GGG | - | chr3.2:54768482-54768501 | None:intergenic | 60.0% | |
CCTTGCCCCGACTTTCGGAA+GGG | + | chr3.2:54768480-54768499 | MS.gene03978:CDS | 60.0% | |
CGGATGGAATCGGGCGTACA+AGG | + | chr3.2:54768592-54768611 | MS.gene03978:intron | 60.0% | |
GCTCTCGCTCCGCTTTGTGA+TGG | - | chr3.2:54769168-54769187 | None:intergenic | 60.0% | |
GGATGTGGTTCCGTCTTGGC+CGG | + | chr3.2:54769523-54769542 | MS.gene03978:CDS | 60.0% | |
GTGTCCCTTGCCCCGACTTT+CGG | + | chr3.2:54768475-54768494 | MS.gene03978:CDS | 60.0% | |
TGCCACATGGTTCCAGCCGT+AGG | - | chr3.2:54768813-54768832 | None:intergenic | 60.0% | |
! | CGGCGCTTTGCATTTTCCCC+TGG | - | chr3.2:54768429-54768448 | None:intergenic | 60.0% |
CCCTTCCGAAAGTCGGGGCA+AGG | - | chr3.2:54768483-54768502 | None:intergenic | 65.0% | |
CCCTTGCCCCGACTTTCGGA+AGG | + | chr3.2:54768479-54768498 | MS.gene03978:CDS | 65.0% | |
CGCCTACGGCTGGAACCATG+TGG | + | chr3.2:54768808-54768827 | MS.gene03978:CDS | 65.0% | |
GCAGCATCATCGCCTACGGC+TGG | + | chr3.2:54768798-54768817 | MS.gene03978:CDS | 65.0% | |
TCTGGTTGGGGCTCCCCTGA+TGG | + | chr3.2:54769269-54769288 | MS.gene03978:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 54767812 | 54769583 | 54767812 | ID=MS.gene03978 |
chr3.2 | mRNA | 54767812 | 54769583 | 54767812 | ID=MS.gene03978.t1;Parent=MS.gene03978 |
chr3.2 | exon | 54767812 | 54768068 | 54767812 | ID=MS.gene03978.t1.exon1;Parent=MS.gene03978.t1 |
chr3.2 | CDS | 54767812 | 54768068 | 54767812 | ID=cds.MS.gene03978.t1;Parent=MS.gene03978.t1 |
chr3.2 | exon | 54768137 | 54768264 | 54768137 | ID=MS.gene03978.t1.exon2;Parent=MS.gene03978.t1 |
chr3.2 | CDS | 54768137 | 54768264 | 54768137 | ID=cds.MS.gene03978.t1;Parent=MS.gene03978.t1 |
chr3.2 | exon | 54768430 | 54768540 | 54768430 | ID=MS.gene03978.t1.exon3;Parent=MS.gene03978.t1 |
chr3.2 | CDS | 54768430 | 54768540 | 54768430 | ID=cds.MS.gene03978.t1;Parent=MS.gene03978.t1 |
chr3.2 | exon | 54768643 | 54769583 | 54768643 | ID=MS.gene03978.t1.exon4;Parent=MS.gene03978.t1 |
chr3.2 | CDS | 54768643 | 54769583 | 54768643 | ID=cds.MS.gene03978.t1;Parent=MS.gene03978.t1 |
Gene Sequence |
Protein sequence |