AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene03978


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03978.t1 MTR_3g464260 55.456 559 104 10 1 478 35 529 0.0 522
MS.gene03978.t1 MTR_1g075890 52.174 621 114 10 1 448 43 653 8.97e-174 503
MS.gene03978.t1 MTR_3g464280 54.298 477 141 10 6 420 32 493 2.76e-139 410
MS.gene03978.t1 MTR_3g464290 57.459 362 111 11 128 464 128 471 5.60e-100 308
MS.gene03978.t1 MTR_5g071070 40.741 459 149 17 129 477 176 621 1.43e-80 262
MS.gene03978.t1 MTR_5g071070 40.741 459 149 17 129 477 258 703 7.45e-80 262
MS.gene03978.t1 MTR_5g071070 52.101 119 34 2 1 96 45 163 5.53e-27 115
MS.gene03978.t1 MTR_3g464270 46.765 340 110 8 129 424 37 349 2.25e-77 246
MS.gene03978.t1 MTR_5g082830 37.862 449 170 16 129 478 245 683 3.20e-66 225
MS.gene03978.t1 MTR_5g082830 51.515 99 46 1 2 98 41 139 1.03e-25 111
MS.gene03978.t1 MTR_3g070880 31.634 569 214 23 2 469 21 515 1.55e-58 201
MS.gene03978.t1 MTR_7g092070 29.808 416 168 16 129 444 292 683 4.24e-33 133
MS.gene03978.t1 MTR_7g092070 55.128 78 35 0 2 79 58 135 9.32e-21 95.9
MS.gene03978.t1 MTR_3g029590 28.571 469 187 20 129 478 292 731 7.88e-28 117
MS.gene03978.t1 MTR_3g029590 48.529 68 35 0 14 81 68 135 3.93e-14 75.5
MS.gene03978.t1 MTR_1g050438 41.000 100 56 2 2 98 26 125 6.58e-16 80.9
MS.gene03978.t1 MTR_0728s0020 41.000 100 56 2 2 98 42 141 7.54e-16 80.5
MS.gene03978.t1 MTR_3g435680 40.426 94 22 1 130 189 180 273 3.06e-15 77.8
MS.gene03978.t1 MTR_1g081420 70.833 48 14 0 338 385 181 228 1.75e-14 73.2
MS.gene03978.t1 MTR_6g090380 72.973 37 10 0 129 165 131 167 1.16e-12 69.7
MS.gene03978.t1 MTR_8g102100 72.973 37 10 0 129 165 109 145 1.97e-12 68.9
MS.gene03978.t1 MTR_3g435590 66.667 36 12 0 130 165 267 302 4.35e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene03978.t1 AT2G40140 36.735 392 169 14 129 478 242 596 1.93e-49 178
MS.gene03978.t1 AT2G40140 55.814 86 38 0 5 90 48 133 4.79e-25 108
MS.gene03978.t1 AT2G40140 36.735 392 169 14 129 478 242 596 1.93e-49 178
MS.gene03978.t1 AT2G40140 55.814 86 38 0 5 90 48 133 4.79e-25 108
MS.gene03978.t1 AT5G58620 35.714 406 170 16 129 478 237 607 4.07e-49 177
MS.gene03978.t1 AT5G58620 57.798 109 44 1 6 114 30 136 1.91e-29 122
MS.gene03978.t1 AT3G55980 35.787 394 157 19 129 478 239 580 2.12e-44 164
MS.gene03978.t1 AT3G55980 55.056 89 40 0 2 90 41 129 1.02e-24 107
MS.gene03978.t1 AT3G55980 35.787 394 157 19 129 478 306 647 6.86e-44 164
MS.gene03978.t1 AT3G55980 55.056 89 40 0 2 90 108 196 7.90e-25 108
MS.gene03978.t1 AT5G12850 31.044 364 152 14 129 403 285 638 8.92e-34 135
MS.gene03978.t1 AT5G12850 41.975 81 45 1 14 92 64 144 8.49e-14 74.3
MS.gene03978.t1 AT2G41900 37.327 217 85 7 129 304 289 495 9.49e-28 117
MS.gene03978.t1 AT2G41900 36.496 137 81 3 7 138 64 199 8.01e-18 87.0
MS.gene03978.t1 AT4G29190 36.986 146 58 7 129 242 107 250 5.32e-13 70.9
MS.gene03978.t1 AT2G25900 64.865 37 13 0 129 165 118 154 9.87e-12 66.2
MS.gene03978.t1 AT2G25900 64.865 37 13 0 129 165 118 154 9.87e-12 66.2
MS.gene03978.t1 AT2G19810 64.865 37 13 0 129 165 106 142 2.66e-11 65.5

Find 120 sgRNAs with CRISPR-Local

Find 169 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAATGCAATTTCATAATT+TGG 0.085620 3.2:+54769502 MS.gene03978:CDS
GCTCTTCATTGTGTTGTTTC+TGG 0.131848 3.2:+54768025 MS.gene03978:CDS
CTTATGGTTTCTGCCTTATT+TGG 0.186884 3.2:+54767923 MS.gene03978:CDS
CTTACCAATTCAAATGTTAT+TGG 0.199131 3.2:+54769119 MS.gene03978:CDS
TTCACAGATGTTGTTGAAAA+AGG 0.211504 3.2:+54767818 MS.gene03978:CDS
TTCTTCTAAATTCTCTGGTT+GGG 0.255630 3.2:+54769256 MS.gene03978:CDS
GGTGTCCTGTCTTATATTAT+TGG 0.263939 3.2:+54767953 MS.gene03978:CDS
GACACCCTTGCTTCCAAATA+AGG 0.305473 3.2:-54767936 None:intergenic
ATGAGGAAATCTTATTCTTT+CGG 0.306520 3.2:+54769332 MS.gene03978:CDS
GTGTCCCTTGCCCCGACTTT+CGG 0.317518 3.2:+54768475 MS.gene03978:CDS
TCTCCTTCAAATAGGCTTGC+AGG 0.328651 3.2:+54768987 MS.gene03978:CDS
TATTCATCAAATTCAATTGC+TGG 0.345540 3.2:-54769467 None:intergenic
TGAAGAGAGGACACCTCTTA+TGG 0.347611 3.2:+54767907 MS.gene03978:CDS
GTCTTTCATCTCCTTCAAAT+AGG 0.348830 3.2:+54768979 MS.gene03978:CDS
ATGGATTCTTCTAAATTCTC+TGG 0.358958 3.2:+54769251 MS.gene03978:CDS
GAGGGTTGGATCGAAGGAAA+TGG 0.360734 3.2:+54767880 MS.gene03978:CDS
CTTGTAGCAGCTCCACCATT+TGG 0.370368 3.2:-54768236 None:intergenic
GTCATCTTCATCGGTTGAAC+AGG 0.377951 3.2:-54768169 None:intergenic
TTTCTTGGCATCTGAAGAGC+TGG 0.379566 3.2:-54768861 None:intergenic
CATGATCCCTTCCGAAAGTC+GGG 0.387890 3.2:-54768486 None:intergenic
TGATCCAATAACATTTGAAT+TGG 0.388637 3.2:-54769123 None:intergenic
TGACACTGACAATATTCTTA+AGG 0.391698 3.2:+54768203 MS.gene03978:CDS
TTGTGCTACCTCACTTGCTA+TGG 0.408316 3.2:+54769232 MS.gene03978:CDS
CTGTCTTATATTATTGGAAC+CGG 0.409250 3.2:+54767959 MS.gene03978:CDS
AAGGATAGACCCAGAGTTGA+TGG 0.417953 3.2:-54769091 None:intergenic
AGGGTTGGATCGAAGGAAAT+GGG 0.426387 3.2:+54767881 MS.gene03978:CDS
TTCTGCCTTATTTGGAAGCA+AGG 0.427911 3.2:+54767931 MS.gene03978:CDS
ATTCTTCTAAATTCTCTGGT+TGG 0.432619 3.2:+54769255 MS.gene03978:CDS
GACAATATTCTTAAGGAAGC+AGG 0.436071 3.2:+54768210 MS.gene03978:CDS
TCTGGTTGGGGCTCCCCTGA+TGG 0.438236 3.2:+54769269 MS.gene03978:CDS
TCTTCTAAATTCTCTGGTTG+GGG 0.439130 3.2:+54769257 MS.gene03978:CDS
CCGTCATTAACTTCCGCATA+AGG 0.448177 3.2:-54768944 None:intergenic
GGATGTGGTTCCGTCTTGGC+CGG 0.449239 3.2:+54769523 MS.gene03978:CDS
ACTCCTGCAAGCCTATTTGA+AGG 0.456472 3.2:-54768990 None:intergenic
TTCACCTAGTTCTTCTTCAT+CGG 0.461261 3.2:+54768707 MS.gene03978:CDS
TTATGGTATGGAAGGAGGGT+TGG 0.464678 3.2:+54767866 MS.gene03978:CDS
CAGGTATAATGATATTTCCT+TGG 0.467024 3.2:-54768453 None:intergenic
ACCGAGTATGCGGCTCAGAT+AGG 0.470269 3.2:+54767996 MS.gene03978:CDS
CCCTATCTGAGCCGCATACT+CGG 0.473108 3.2:-54767997 None:intergenic
TGGAAGGAGGGTTGGATCGA+AGG 0.473211 3.2:+54767874 MS.gene03978:CDS
ATTGAGTTCATCGCCGCGGA+TGG 0.473676 3.2:-54769306 None:intergenic
ATTTGGATGTGGTTCCGTCT+TGG 0.475264 3.2:+54769519 MS.gene03978:CDS
GCAGCATCATCGCCTACGGC+TGG 0.487982 3.2:+54768798 MS.gene03978:CDS
CGACCGTTGTATGCTTCTAC+CGG 0.490079 3.2:+54768651 MS.gene03978:CDS
CCCTTGCCCCGACTTTCGGA+AGG 0.498336 3.2:+54768479 MS.gene03978:CDS
GCAATTTCATAATTTGGATG+TGG 0.499012 3.2:+54769508 MS.gene03978:CDS
CCCTTCCGAAAGTCGGGGCA+AGG 0.501706 3.2:-54768480 None:intergenic
AGGTGAAGGCAAAGCAGAAC+CGG 0.502979 3.2:-54768670 None:intergenic
TTCTTGGCATCTGAAGAGCT+GGG 0.503638 3.2:-54768860 None:intergenic
AGAACACGAACCATCAACTC+TGG 0.504443 3.2:+54769081 MS.gene03978:CDS
GCATGATCCCTTCCGAAAGT+CGG 0.505621 3.2:-54768487 None:intergenic
CCGAGTATGCGGCTCAGATA+GGG 0.516581 3.2:+54767997 MS.gene03978:CDS
AACATAAAAGTCATCTTCAT+CGG 0.518216 3.2:-54768178 None:intergenic
TGGGGTTAATTCACTTGTGA+AGG 0.518540 3.2:+54769436 MS.gene03978:CDS
TTTGAATTGGTAAGATCAGA+AGG 0.519210 3.2:-54769110 None:intergenic
TAGGGTTATGGTATGGAAGG+AGG 0.528404 3.2:+54767861 MS.gene03978:CDS
TGCTTCATGTACAGTTGCTC+CGG 0.529190 3.2:-54769542 None:intergenic
AATAAGGCAGAAACCATAAG+AGG 0.534423 3.2:-54767920 None:intergenic
AAAGTCGGGGCAAGGGACAC+AGG 0.535861 3.2:-54768472 None:intergenic
AGGGTTATGGTATGGAAGGA+GGG 0.536148 3.2:+54767862 MS.gene03978:CDS
TAAGGAAGCAGGTTTCCAAA+TGG 0.540705 3.2:+54768221 MS.gene03978:CDS
TCTGCCTTATTTGGAAGCAA+GGG 0.541989 3.2:+54767932 MS.gene03978:CDS
ATGCAAAGCGCCGTGATCCA+AGG 0.543626 3.2:+54768436 MS.gene03978:CDS
AACATGATGTTGATGAGGTA+GGG 0.544918 3.2:+54767843 MS.gene03978:CDS
CCCCTGATGGAAAATTAGAC+TGG 0.548612 3.2:+54769282 MS.gene03978:CDS
GTCGTTCTGCACTTCTGCTG+AGG 0.549073 3.2:+54768047 MS.gene03978:CDS
GGAGCAACTGTACATGAAGC+AGG 0.554715 3.2:+54769544 MS.gene03978:CDS
ATGTTGATGAGGTAGGGTTA+TGG 0.554961 3.2:+54767849 MS.gene03978:CDS
GCAGATGGAGTCAAAGGTGG+CGG 0.558024 3.2:-54768777 None:intergenic
GGTGAATTCGAATATGATGT+AGG 0.560129 3.2:-54768690 None:intergenic
GGAAGCAGGTTTCCAAATGG+TGG 0.560340 3.2:+54768224 MS.gene03978:CDS
ATCTGCAGCATCATCGCCTA+CGG 0.562339 3.2:+54768794 MS.gene03978:CDS
CAGAAGTAGCACTTCAACAA+TGG 0.563136 3.2:+54769364 MS.gene03978:CDS
AATGATATTTCCTTGGATCA+CGG 0.568390 3.2:-54768446 None:intergenic
GTGGAGCTGCTACAAGATGC+AGG 0.572446 3.2:+54768243 MS.gene03978:CDS
GAACATGATGTTGATGAGGT+AGG 0.574038 3.2:+54767842 MS.gene03978:CDS
AGACTTAAAGCTTGCCACGC+TGG 0.574936 3.2:-54769201 None:intergenic
TTCGAATATGATGTAGGTGA+AGG 0.575873 3.2:-54768684 None:intergenic
CGGAAGGGATCATGCAGCAA+AGG 0.575933 3.2:+54768495 MS.gene03978:CDS
CCTTGCCCCGACTTTCGGAA+GGG 0.578605 3.2:+54768480 MS.gene03978:CDS
GCTCTCGCTCCGCTTTGTGA+TGG 0.581388 3.2:-54769165 None:intergenic
GTACATGAAGCAGGAGCAGA+TGG 0.582689 3.2:+54769553 MS.gene03978:CDS
AGAAGAATCCATAGCAAGTG+AGG 0.583861 3.2:-54769240 None:intergenic
TACAGTTGCTCCGGCCAAGA+CGG 0.585751 3.2:-54769533 None:intergenic
CGGTTCCAATAATATAAGAC+AGG 0.589189 3.2:-54767958 None:intergenic
GAACACGAACCATCAACTCT+GGG 0.593605 3.2:+54769082 MS.gene03978:CDS
TCGGTTAACATCTACACGAC+CGG 0.594422 3.2:-54767978 None:intergenic
CTTATGCGGAAGTTAATGAC+GGG 0.596514 3.2:+54768945 MS.gene03978:CDS
AGGTAGGGTTATGGTATGGA+AGG 0.598568 3.2:+54767858 MS.gene03978:CDS
CCTTCCGAAAGTCGGGGCAA+GGG 0.599933 3.2:-54768479 None:intergenic
GTAGGCGATGATGCTGCAGA+TGG 0.600318 3.2:-54768792 None:intergenic
TGCCACATGGTTCCAGCCGT+AGG 0.601454 3.2:-54768810 None:intergenic
CCTTATGCGGAAGTTAATGA+CGG 0.602861 3.2:+54768944 MS.gene03978:CDS
GTGTAGCGACTTAATTGTCT+CGG 0.604680 3.2:+54768131 MS.gene03978:intron
GATGAGGTAGGGTTATGGTA+TGG 0.604921 3.2:+54767854 MS.gene03978:CDS
GCGATGAACTCAATAAAATG+AGG 0.608002 3.2:+54769315 MS.gene03978:CDS
GCGGAAGTTAATGACGGGAG+AGG 0.608895 3.2:+54768950 MS.gene03978:CDS
GTGTTCTGATGCGACTGCAT+TGG 0.609359 3.2:-54769065 None:intergenic
TAATCCGATGAAGAAGAACT+AGG 0.616056 3.2:-54768711 None:intergenic
AGGCGAACATGATGTTGATG+AGG 0.616849 3.2:+54767838 MS.gene03978:CDS
TGATGCGACTGCATTGGTGT+CGG 0.622152 3.2:-54769059 None:intergenic
GCAGATTGTGTCAAATAAGA+CGG 0.628556 3.2:-54768750 None:intergenic
AACATGAAAATCTCCTTATG+CGG 0.633353 3.2:+54768931 MS.gene03978:CDS
CCGAGTCTGAGTCTGCCACA+TGG 0.648294 3.2:-54768823 None:intergenic
AGGAAATGGGATATGAAGAG+AGG 0.649200 3.2:+54767894 MS.gene03978:CDS
GATGCTGCAGATGGAGTCAA+AGG 0.650089 3.2:-54768783 None:intergenic
GTAGATGTTAACCGAGTATG+CGG 0.658936 3.2:+54767986 MS.gene03978:CDS
CTTTATTGAGCGCACCAGCG+TGG 0.660917 3.2:+54769187 MS.gene03978:CDS
AAATTAGACTGGTCCATCCG+CGG 0.660945 3.2:+54769293 MS.gene03978:CDS
CCATGTGGCAGACTCAGACT+CGG 0.670671 3.2:+54768823 MS.gene03978:CDS
ATGATCCCTTCCGAAAGTCG+GGG 0.672164 3.2:-54768485 None:intergenic
AAGTAGCACTTCAACAATGG+TGG 0.674338 3.2:+54769367 MS.gene03978:CDS
CGCCTACGGCTGGAACCATG+TGG 0.694097 3.2:+54768808 MS.gene03978:CDS
GCTGCAGATGGAGTCAAAGG+TGG 0.696337 3.2:-54768780 None:intergenic
ATAGCAAGTGAGGTAGCACA+AGG 0.698315 3.2:-54769230 None:intergenic
ATGGCATCAACTCTTAATTG+TGG 0.699766 3.2:-54769146 None:intergenic
CATGAAGCAGGAGCAGATGG+TGG 0.702473 3.2:+54769556 MS.gene03978:CDS
GAGTTGATGCCATCACAAAG+CGG 0.725373 3.2:+54769156 MS.gene03978:CDS
GATGCTTGTGAATATGCACA+TGG 0.757069 3.2:+54768519 MS.gene03978:CDS
GAACCGGTAGAAGCATACAA+CGG 0.780700 3.2:-54768654 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATAGTACAAATGAATTT+AGG + chr3.2:54768331-54768350 MS.gene03978:intron 15.0%
!! TCAAATGCAATTTCATAATT+TGG + chr3.2:54769502-54769521 MS.gene03978:CDS 20.0%
!!! ATGATCCTGATATTTTTTTA+AGG + chr3.2:54769405-54769424 MS.gene03978:CDS 20.0%
! AACATAAAAGTCATCTTCAT+CGG - chr3.2:54768181-54768200 None:intergenic 25.0%
! ATGAGGAAATCTTATTCTTT+CGG + chr3.2:54769332-54769351 MS.gene03978:CDS 25.0%
! CTTACCAATTCAAATGTTAT+TGG + chr3.2:54769119-54769138 MS.gene03978:CDS 25.0%
! TATATCCCATTATTTATCTC+AGG - chr3.2:54768315-54768334 None:intergenic 25.0%
! TATTCATCAAATTCAATTGC+TGG - chr3.2:54769470-54769489 None:intergenic 25.0%
! TCTTGCCTTAAAAAAATATC+AGG - chr3.2:54769413-54769432 None:intergenic 25.0%
! TGATCCAATAACATTTGAAT+TGG - chr3.2:54769126-54769145 None:intergenic 25.0%
!!! ATTTTTTTAAGGCAAGAAAC+TGG + chr3.2:54769416-54769435 MS.gene03978:CDS 25.0%
!!! CACATGGTATTTTTTAATGT+TGG + chr3.2:54768535-54768554 MS.gene03978:intron 25.0%
!!! TTTTTTTAAGGCAAGAAACT+GGG + chr3.2:54769417-54769436 MS.gene03978:CDS 25.0%
AACATGAAAATCTCCTTATG+CGG + chr3.2:54768931-54768950 MS.gene03978:CDS 30.0%
AATGATATTTCCTTGGATCA+CGG - chr3.2:54768449-54768468 None:intergenic 30.0%
ATGGATTCTTCTAAATTCTC+TGG + chr3.2:54769251-54769270 MS.gene03978:CDS 30.0%
ATTCTTCTAAATTCTCTGGT+TGG + chr3.2:54769255-54769274 MS.gene03978:CDS 30.0%
CAGGTATAATGATATTTCCT+TGG - chr3.2:54768456-54768475 None:intergenic 30.0%
CTGTCTTATATTATTGGAAC+CGG + chr3.2:54767959-54767978 MS.gene03978:CDS 30.0%
GCAATTTCATAATTTGGATG+TGG + chr3.2:54769508-54769527 MS.gene03978:CDS 30.0%
TGACACTGACAATATTCTTA+AGG + chr3.2:54768203-54768222 MS.gene03978:CDS 30.0%
TTCACAGATGTTGTTGAAAA+AGG + chr3.2:54767818-54767837 MS.gene03978:CDS 30.0%
TTCTTCTAAATTCTCTGGTT+GGG + chr3.2:54769256-54769275 MS.gene03978:CDS 30.0%
TTTGAATTGGTAAGATCAGA+AGG - chr3.2:54769113-54769132 None:intergenic 30.0%
! CTAACCTTGAAAACATTTTC+GGG + chr3.2:54769021-54769040 MS.gene03978:CDS 30.0%
! GCTAACCTTGAAAACATTTT+CGG + chr3.2:54769020-54769039 MS.gene03978:CDS 30.0%
!! AAAATGTTTTCAAGGTTAGC+GGG - chr3.2:54769020-54769039 None:intergenic 30.0%
!! GAAAATGTTTTCAAGGTTAG+CGG - chr3.2:54769021-54769040 None:intergenic 30.0%
!!! TTTTTTAAGGCAAGAAACTG+GGG + chr3.2:54769418-54769437 MS.gene03978:CDS 30.0%
AATAAGGCAGAAACCATAAG+AGG - chr3.2:54767923-54767942 None:intergenic 35.0%
ATGGCATCAACTCTTAATTG+TGG - chr3.2:54769149-54769168 None:intergenic 35.0%
CCCATTATTTATCTCAGGAA+GGG - chr3.2:54768310-54768329 None:intergenic 35.0%
CCCTTCCTGAGATAAATAAT+GGG + chr3.2:54768307-54768326 MS.gene03978:intron 35.0%
CGGTTCCAATAATATAAGAC+AGG - chr3.2:54767961-54767980 None:intergenic 35.0%
GACAATATTCTTAAGGAAGC+AGG + chr3.2:54768210-54768229 MS.gene03978:CDS 35.0%
GCAGATTGTGTCAAATAAGA+CGG - chr3.2:54768753-54768772 None:intergenic 35.0%
GCGATGAACTCAATAAAATG+AGG + chr3.2:54769315-54769334 MS.gene03978:CDS 35.0%
GGTGAATTCGAATATGATGT+AGG - chr3.2:54768693-54768712 None:intergenic 35.0%
GGTGTCCTGTCTTATATTAT+TGG + chr3.2:54767953-54767972 MS.gene03978:CDS 35.0%
GTCTTTCATCTCCTTCAAAT+AGG + chr3.2:54768979-54768998 MS.gene03978:CDS 35.0%
TAATCCGATGAAGAAGAACT+AGG - chr3.2:54768714-54768733 None:intergenic 35.0%
TCCCATTATTTATCTCAGGA+AGG - chr3.2:54768311-54768330 None:intergenic 35.0%
TCCCTTCCTGAGATAAATAA+TGG + chr3.2:54768306-54768325 MS.gene03978:intron 35.0%
TCTTCTAAATTCTCTGGTTG+GGG + chr3.2:54769257-54769276 MS.gene03978:CDS 35.0%
TTCGAATATGATGTAGGTGA+AGG - chr3.2:54768687-54768706 None:intergenic 35.0%
! AACATGATGTTGATGAGGTA+GGG + chr3.2:54767843-54767862 MS.gene03978:CDS 35.0%
! ACCAGTCTAATTTTCCATCA+GGG - chr3.2:54769286-54769305 None:intergenic 35.0%
! ATGACCCGAAAATGTTTTCA+AGG - chr3.2:54769028-54769047 None:intergenic 35.0%
! CTTATGGTTTCTGCCTTATT+TGG + chr3.2:54767923-54767942 MS.gene03978:CDS 35.0%
! TTCACCTAGTTCTTCTTCAT+CGG + chr3.2:54768707-54768726 MS.gene03978:CDS 35.0%
!! GCAGTTTTCAATCTGTTTCT+TGG - chr3.2:54768879-54768898 None:intergenic 35.0%
AAGTAGCACTTCAACAATGG+TGG + chr3.2:54769367-54769386 MS.gene03978:CDS 40.0%
AGAAGAATCCATAGCAAGTG+AGG - chr3.2:54769243-54769262 None:intergenic 40.0%
AGACAATTAAGTCGCTACAC+CGG - chr3.2:54768131-54768150 None:intergenic 40.0%
AGGAAATGGGATATGAAGAG+AGG + chr3.2:54767894-54767913 MS.gene03978:CDS 40.0%
ATACAGAACAAGGCTTTGCA+CGG + chr3.2:54768572-54768591 MS.gene03978:intron 40.0%
ATCCTGCTCAATACAGAACA+AGG + chr3.2:54768562-54768581 MS.gene03978:intron 40.0%
CAAGGGCTTATTCTCATGAT+TGG + chr3.2:54768382-54768401 MS.gene03978:intron 40.0%
CAGAAGTAGCACTTCAACAA+TGG + chr3.2:54769364-54769383 MS.gene03978:CDS 40.0%
CCTTATGCGGAAGTTAATGA+CGG + chr3.2:54768944-54768963 MS.gene03978:CDS 40.0%
CTTATGCGGAAGTTAATGAC+GGG + chr3.2:54768945-54768964 MS.gene03978:CDS 40.0%
GATGCTTGTGAATATGCACA+TGG + chr3.2:54768519-54768538 MS.gene03978:CDS 40.0%
GTAGATGTTAACCGAGTATG+CGG + chr3.2:54767986-54768005 MS.gene03978:CDS 40.0%
GTGTAGCGACTTAATTGTCT+CGG + chr3.2:54768131-54768150 MS.gene03978:intron 40.0%
TAAGGAAGCAGGTTTCCAAA+TGG + chr3.2:54768221-54768240 MS.gene03978:CDS 40.0%
TCAGGAAGGGATCAATCAAT+CGG - chr3.2:54768297-54768316 None:intergenic 40.0%
TGAGAATAAGCCCTTGAACA+AGG - chr3.2:54768378-54768397 None:intergenic 40.0%
TGGGGTTAATTCACTTGTGA+AGG + chr3.2:54769436-54769455 MS.gene03978:CDS 40.0%
! ATGTTGATGAGGTAGGGTTA+TGG + chr3.2:54767849-54767868 MS.gene03978:CDS 40.0%
! ATTTTCCCCTGGATGAACAA+AGG - chr3.2:54768418-54768437 None:intergenic 40.0%
! CCAGTCTAATTTTCCATCAG+GGG - chr3.2:54769285-54769304 None:intergenic 40.0%
! GAACATGATGTTGATGAGGT+AGG + chr3.2:54767842-54767861 MS.gene03978:CDS 40.0%
! GACCAGTCTAATTTTCCATC+AGG - chr3.2:54769287-54769306 None:intergenic 40.0%
! TTTTATTGAGTTCATCGCCG+CGG - chr3.2:54769313-54769332 None:intergenic 40.0%
! TTTTCCCCTGGATGAACAAA+GGG - chr3.2:54768417-54768436 None:intergenic 40.0%
!! CAAAGTGAAGCCTTGTTCAA+GGG + chr3.2:54768365-54768384 MS.gene03978:intron 40.0%
!! GCTCTTCATTGTGTTGTTTC+TGG + chr3.2:54768025-54768044 MS.gene03978:CDS 40.0%
!! TCAAAGTGAAGCCTTGTTCA+AGG + chr3.2:54768364-54768383 MS.gene03978:intron 40.0%
!! TCTGCCTTATTTGGAAGCAA+GGG + chr3.2:54767932-54767951 MS.gene03978:CDS 40.0%
!! TTCTGCCTTATTTGGAAGCA+AGG + chr3.2:54767931-54767950 MS.gene03978:CDS 40.0%
AAGGATAGACCCAGAGTTGA+TGG - chr3.2:54769094-54769113 None:intergenic 45.0%
ACTCCTGCAAGCCTATTTGA+AGG - chr3.2:54768993-54769012 None:intergenic 45.0%
AGAACACGAACCATCAACTC+TGG + chr3.2:54769081-54769100 MS.gene03978:CDS 45.0%
AGGCGAACATGATGTTGATG+AGG + chr3.2:54767838-54767857 MS.gene03978:CDS 45.0%
AGGGTTATGGTATGGAAGGA+GGG + chr3.2:54767862-54767881 MS.gene03978:CDS 45.0%
AGGGTTGGATCGAAGGAAAT+GGG + chr3.2:54767881-54767900 MS.gene03978:CDS 45.0%
AGGTAGGGTTATGGTATGGA+AGG + chr3.2:54767858-54767877 MS.gene03978:CDS 45.0%
AGTGTCCCTTTGTTCATCCA+GGG + chr3.2:54768409-54768428 MS.gene03978:intron 45.0%
ATAGCAAGTGAGGTAGCACA+AGG - chr3.2:54769233-54769252 None:intergenic 45.0%
ATTTGGATGTGGTTCCGTCT+TGG + chr3.2:54769519-54769538 MS.gene03978:CDS 45.0%
CCCCTGATGGAAAATTAGAC+TGG + chr3.2:54769282-54769301 MS.gene03978:CDS 45.0%
CCGTCATTAACTTCCGCATA+AGG - chr3.2:54768947-54768966 None:intergenic 45.0%
GAACACGAACCATCAACTCT+GGG + chr3.2:54769082-54769101 MS.gene03978:CDS 45.0%
GACACCCTTGCTTCCAAATA+AGG - chr3.2:54767939-54767958 None:intergenic 45.0%
GATGAGGTAGGGTTATGGTA+TGG + chr3.2:54767854-54767873 MS.gene03978:CDS 45.0%
TAGGGTTATGGTATGGAAGG+AGG + chr3.2:54767861-54767880 MS.gene03978:CDS 45.0%
TCGGTTAACATCTACACGAC+CGG - chr3.2:54767981-54768000 None:intergenic 45.0%
TCTCCTTCAAATAGGCTTGC+AGG + chr3.2:54768987-54769006 MS.gene03978:CDS 45.0%
TGAAGAGAGGACACCTCTTA+TGG + chr3.2:54767907-54767926 MS.gene03978:CDS 45.0%
TGCTTCATGTACAGTTGCTC+CGG - chr3.2:54769545-54769564 None:intergenic 45.0%
TGGATGAACAAAGGGACACT+CGG - chr3.2:54768409-54768428 None:intergenic 45.0%
TTATGGTATGGAAGGAGGGT+TGG + chr3.2:54767866-54767885 MS.gene03978:CDS 45.0%
TTCTTGGCATCTGAAGAGCT+GGG - chr3.2:54768863-54768882 None:intergenic 45.0%
TTTCTTGGCATCTGAAGAGC+TGG - chr3.2:54768864-54768883 None:intergenic 45.0%
! AAATTAGACTGGTCCATCCG+CGG + chr3.2:54769293-54769312 MS.gene03978:CDS 45.0%
! GAACCGGTAGAAGCATACAA+CGG - chr3.2:54768657-54768676 None:intergenic 45.0%
! GCTTTTGCTTGATGCATCTG+CGG + chr3.2:54768077-54768096 MS.gene03978:intron 45.0%
! GTCATCTTCATCGGTTGAAC+AGG - chr3.2:54768172-54768191 None:intergenic 45.0%
! TTGTGCTACCTCACTTGCTA+TGG + chr3.2:54769232-54769251 MS.gene03978:CDS 45.0%
!! AGCCTTGTTCTGTATTGAGC+AGG - chr3.2:54768567-54768586 None:intergenic 45.0%
!! GAGTTGATGCCATCACAAAG+CGG + chr3.2:54769156-54769175 MS.gene03978:CDS 45.0%
AGAACAAGGCTTTGCACGGA+TGG + chr3.2:54768576-54768595 MS.gene03978:intron 50.0%
AGACTTAAAGCTTGCCACGC+TGG - chr3.2:54769204-54769223 None:intergenic 50.0%
AGGCTTTGCACGGATGGAAT+CGG + chr3.2:54768582-54768601 MS.gene03978:intron 50.0%
AGGTGAAGGCAAAGCAGAAC+CGG - chr3.2:54768673-54768692 None:intergenic 50.0%
ATCTGCAGCATCATCGCCTA+CGG + chr3.2:54768794-54768813 MS.gene03978:CDS 50.0%
ATGATCCCTTCCGAAAGTCG+GGG - chr3.2:54768488-54768507 None:intergenic 50.0%
CATGATCCCTTCCGAAAGTC+GGG - chr3.2:54768489-54768508 None:intergenic 50.0%
CGACCGTTGTATGCTTCTAC+CGG + chr3.2:54768651-54768670 MS.gene03978:CDS 50.0%
CTGTTGTTGCGAATGGCAAC+CGG + chr3.2:54768109-54768128 MS.gene03978:intron 50.0%
CTTGTAGCAGCTCCACCATT+TGG - chr3.2:54768239-54768258 None:intergenic 50.0%
GAGGGTTGGATCGAAGGAAA+TGG + chr3.2:54767880-54767899 MS.gene03978:CDS 50.0%
GAGTGTCCCTTTGTTCATCC+AGG + chr3.2:54768408-54768427 MS.gene03978:intron 50.0%
GATGCTGCAGATGGAGTCAA+AGG - chr3.2:54768786-54768805 None:intergenic 50.0%
GCATGATCCCTTCCGAAAGT+CGG - chr3.2:54768490-54768509 None:intergenic 50.0%
GGAAGCAGGTTTCCAAATGG+TGG + chr3.2:54768224-54768243 MS.gene03978:CDS 50.0%
GGAGCAACTGTACATGAAGC+AGG + chr3.2:54769544-54769563 MS.gene03978:CDS 50.0%
GTACATGAAGCAGGAGCAGA+TGG + chr3.2:54769553-54769572 MS.gene03978:CDS 50.0%
GTGTCCCTTTGTTCATCCAG+GGG + chr3.2:54768410-54768429 MS.gene03978:intron 50.0%
GTGTTCTGATGCGACTGCAT+TGG - chr3.2:54769068-54769087 None:intergenic 50.0%
TACAACGGTCGAAGCTCATC+TGG - chr3.2:54768642-54768661 None:intergenic 50.0%
TTGCTTGATGCATCTGCGGA+TGG + chr3.2:54768081-54768100 MS.gene03978:intron 50.0%
! GGTAGCTCTGTTGTTGCGAA+TGG + chr3.2:54768102-54768121 MS.gene03978:intron 50.0%
! TGATGCGACTGCATTGGTGT+CGG - chr3.2:54769062-54769081 None:intergenic 50.0%
ACCGAGTATGCGGCTCAGAT+AGG + chr3.2:54767996-54768015 MS.gene03978:CDS 55.0%
ATGGAATCGGGCGTACAAGG+AGG + chr3.2:54768595-54768614 MS.gene03978:intron 55.0%
ATTGAGTTCATCGCCGCGGA+TGG - chr3.2:54769309-54769328 None:intergenic 55.0%
CATGAAGCAGGAGCAGATGG+TGG + chr3.2:54769556-54769575 MS.gene03978:CDS 55.0%
CCATGTGGCAGACTCAGACT+CGG + chr3.2:54768823-54768842 MS.gene03978:CDS 55.0%
CCCTATCTGAGCCGCATACT+CGG - chr3.2:54768000-54768019 None:intergenic 55.0%
CCGAGTATGCGGCTCAGATA+GGG + chr3.2:54767997-54768016 MS.gene03978:CDS 55.0%
CGGAAGGGATCATGCAGCAA+AGG + chr3.2:54768495-54768514 MS.gene03978:CDS 55.0%
CTTTATTGAGCGCACCAGCG+TGG + chr3.2:54769187-54769206 MS.gene03978:CDS 55.0%
GCAGATGGAGTCAAAGGTGG+CGG - chr3.2:54768780-54768799 None:intergenic 55.0%
GCTGCAGATGGAGTCAAAGG+TGG - chr3.2:54768783-54768802 None:intergenic 55.0%
GGCTTTGCACGGATGGAATC+GGG + chr3.2:54768583-54768602 MS.gene03978:intron 55.0%
GTAGGCGATGATGCTGCAGA+TGG - chr3.2:54768795-54768814 None:intergenic 55.0%
GTCGTTCTGCACTTCTGCTG+AGG + chr3.2:54768047-54768066 MS.gene03978:CDS 55.0%
GTGGAGCTGCTACAAGATGC+AGG + chr3.2:54768243-54768262 MS.gene03978:CDS 55.0%
TACAGTTGCTCCGGCCAAGA+CGG - chr3.2:54769536-54769555 None:intergenic 55.0%
TGGAAGGAGGGTTGGATCGA+AGG + chr3.2:54767874-54767893 MS.gene03978:CDS 55.0%
TGGAATCGGGCGTACAAGGA+GGG + chr3.2:54768596-54768615 MS.gene03978:intron 55.0%
! GCGGAAGTTAATGACGGGAG+AGG + chr3.2:54768950-54768969 MS.gene03978:CDS 55.0%
!! ATGCAAAGCGCCGTGATCCA+AGG + chr3.2:54768436-54768455 MS.gene03978:CDS 55.0%
AAAGTCGGGGCAAGGGACAC+AGG - chr3.2:54768475-54768494 None:intergenic 60.0%
CCGAGTCTGAGTCTGCCACA+TGG - chr3.2:54768826-54768845 None:intergenic 60.0%
CCTTCCGAAAGTCGGGGCAA+GGG - chr3.2:54768482-54768501 None:intergenic 60.0%
CCTTGCCCCGACTTTCGGAA+GGG + chr3.2:54768480-54768499 MS.gene03978:CDS 60.0%
CGGATGGAATCGGGCGTACA+AGG + chr3.2:54768592-54768611 MS.gene03978:intron 60.0%
GCTCTCGCTCCGCTTTGTGA+TGG - chr3.2:54769168-54769187 None:intergenic 60.0%
GGATGTGGTTCCGTCTTGGC+CGG + chr3.2:54769523-54769542 MS.gene03978:CDS 60.0%
GTGTCCCTTGCCCCGACTTT+CGG + chr3.2:54768475-54768494 MS.gene03978:CDS 60.0%
TGCCACATGGTTCCAGCCGT+AGG - chr3.2:54768813-54768832 None:intergenic 60.0%
! CGGCGCTTTGCATTTTCCCC+TGG - chr3.2:54768429-54768448 None:intergenic 60.0%
CCCTTCCGAAAGTCGGGGCA+AGG - chr3.2:54768483-54768502 None:intergenic 65.0%
CCCTTGCCCCGACTTTCGGA+AGG + chr3.2:54768479-54768498 MS.gene03978:CDS 65.0%
CGCCTACGGCTGGAACCATG+TGG + chr3.2:54768808-54768827 MS.gene03978:CDS 65.0%
GCAGCATCATCGCCTACGGC+TGG + chr3.2:54768798-54768817 MS.gene03978:CDS 65.0%
TCTGGTTGGGGCTCCCCTGA+TGG + chr3.2:54769269-54769288 MS.gene03978:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 54767812 54769583 54767812 ID=MS.gene03978
chr3.2 mRNA 54767812 54769583 54767812 ID=MS.gene03978.t1;Parent=MS.gene03978
chr3.2 exon 54767812 54768068 54767812 ID=MS.gene03978.t1.exon1;Parent=MS.gene03978.t1
chr3.2 CDS 54767812 54768068 54767812 ID=cds.MS.gene03978.t1;Parent=MS.gene03978.t1
chr3.2 exon 54768137 54768264 54768137 ID=MS.gene03978.t1.exon2;Parent=MS.gene03978.t1
chr3.2 CDS 54768137 54768264 54768137 ID=cds.MS.gene03978.t1;Parent=MS.gene03978.t1
chr3.2 exon 54768430 54768540 54768430 ID=MS.gene03978.t1.exon3;Parent=MS.gene03978.t1
chr3.2 CDS 54768430 54768540 54768430 ID=cds.MS.gene03978.t1;Parent=MS.gene03978.t1
chr3.2 exon 54768643 54769583 54768643 ID=MS.gene03978.t1.exon4;Parent=MS.gene03978.t1
chr3.2 CDS 54768643 54769583 54768643 ID=cds.MS.gene03978.t1;Parent=MS.gene03978.t1
Gene Sequence

>MS.gene03978

ATGGCTTTCACAGATGTTGTTGAAAAAGGCGAACATGATGTTGATGAGGTAGGGTTATGGTATGGAAGGAGGGTTGGATCGAAGGAAATGGGATATGAAGAGAGGACACCTCTTATGGTTTCTGCCTTATTTGGAAGCAAGGGTGTCCTGTCTTATATTATTGGAACCGGTCGTGTAGATGTTAACCGAGTATGCGGCTCAGATAGGGCTACTGCTCTTCATTGTGTTGTTTCTGGTCGTTCTGCACTTCTGCTGAGGTTATCAAGCTTTTGCTTGATGCATCTGCGGATGGTAGCTCTGTTGTTGCGAATGGCAACCGGTGTAGCGACTTAATTGTCTCGGTGTCTAATAATATCTCCTGTTCAACCGATGAAGATGACTTTTATGTTAATGACACTGACAATATTCTTAAGGAAGCAGGTTTCCAAATGGTGGAGCTGCTACAAGATGCAGGTACACGTCGCACTGAGAAGAAAGATTATCCGATTGATTGATCCCTTCCTGAGATAAATAATGGGATATATAGTACAAATGAATTTAGGATGTTTACATTCAAAGTGAAGCCTTGTTCAAGGGCTTATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCAGGGGAAAATGCAAAGCGCCGTGATCCAAGGAAATATCATTATACCTGTGTCCCTTGCCCCGACTTTCGGAAGGGATCATGCAGCAAAGGAGATGCTTGTGAATATGCACATGGTATTTTTTAATGTTGGCTTCATCCTGCTCAATACAGAACAAGGCTTTGCACGGATGGAATCGGGCGTACAAGGAGGGTTTGCTTTTTCGCTCACAAACCAGATGAGCTTCGACCGTTGTATGCTTCTACCGGTTCTGCTTTGCCTTCACCTACATCATATTCGAATTCACCTAGTTCTTCTTCATCGGATTATTTCACATTGAGCTCTCCGTCTTATTTGACACAATCTGCGTCGCCGCCACCTTTGACTCCATCTGCAGCATCATCGCCTACGGCTGGAACCATGTGGCAGACTCAGACTCGGCTTCATACTGTAGTCCCAGCTCTTCAGATGCCAAGAAACAGATTGAAAACTGCACTGAATGCTGTAGATAACATTGAATTTATCGAACATGAAAATCTCCTTATGCGGAAGTTAATGACGGGAGAGGTGACAAGTCTTTCATCTCCTTCAAATAGGCTTGCAGGAGTTAATCCCGCTAACCTTGAAAACATTTTCGGGTCATCAACACAATCTCCGACACCAATGCAGTCGCATCAGAACACGAACCATCAACTCTGGGTCTATCCTTCTGATCTTACCAATTCAAATGTTATTGGATCACCACAATTAAGAGTTGATGCCATCACAAAGCGGAGCGAGAGCTTTATTGAGCGCACCAGCGTGGCAAGCTTTAAGTCTGAGCTTCCTTGTGCTACCTCACTTGCTATGGATTCTTCTAAATTCTCTGGTTGGGGCTCCCCTGATGGAAAATTAGACTGGTCCATCCGCGGCGATGAACTCAATAAAATGAGGAAATCTTATTCTTTCGGCTTTCGAAACAGAAGTAGCACTTCAACAATGGTGGTTGCATCAAATGTTGATGATCCTGATATTTTTTTAAGGCAAGAAACTGGGGTTAATTCACTTGTGAAGGATGATGCTCCAGCAATTGAATTTGATGAATATTTTGTTCAAGATCAAATGCAATTTCATAATTTGGATGTGGTTCCGTCTTGGCCGGAGCAACTGTACATGAAGCAGGAGCAGATGGTGGTGTGA

Protein sequence

>MS.gene03978.t1

MAFTDVVEKGEHDVDEVGLWYGRRVGSKEMGYEERTPLMVSALFGSKGVLSYIIGTGRVDVNRVCGSDRATALHCVVSGRSALLLSDLIVSVSNNISCSTDEDDFYVNDTDNILKEAGFQMVELLQDAGENAKRRDPRKYHYTCVPCPDFRKGSCSKGDACEYAHDELRPLYASTGSALPSPTSYSNSPSSSSSDYFTLSSPSYLTQSASPPPLTPSAASSPTAGTMWQTQTRLHTVVPALQMPRNRLKTALNAVDNIEFIEHENLLMRKLMTGEVTSLSSPSNRLAGVNPANLENIFGSSTQSPTPMQSHQNTNHQLWVYPSDLTNSNVIGSPQLRVDAITKRSESFIERTSVASFKSELPCATSLAMDSSKFSGWGSPDGKLDWSIRGDELNKMRKSYSFGFRNRSSTSTMVVASNVDDPDIFLRQETGVNSLVKDDAPAIEFDEYFVQDQMQFHNLDVVPSWPEQLYMKQEQMVV