AlfalfaGEDB | MS.gene03983

M. sativa cultivar XinJiangDaYe / MS.gene03983

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF13540.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03983.t1	XP_013460252.1	94.3	804	45	1	1	804	1	803	0.00E+00	1445.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03983.t1	Q9LY50	45.9	826	380	16	4	795	13	805	4.4e-160	566.6

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03983.t1	A0A072UYV1	94.3	804	45	1	1	804	1	803	0.0e+00	1445.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03983.t1	MTR_3g464080	95.896	804	32	1	1	804	1	803	0.0	1499
MS.gene03983.t1	MTR_5g082630	52.805	820	323	26	1	788	1	788	0.0	753
MS.gene03983.t1	MTR_3g070800	52.934	801	323	21	4	789	9	770	0.0	737
MS.gene03983.t1	MTR_4g035180	37.953	772	381	30	58	791	19	730	1.43e-122	386
MS.gene03983.t1	MTR_4g067230	33.489	854	439	33	5	791	12	803	2.86e-109	355
MS.gene03983.t1	MTR_2g098910	32.783	848	446	31	7	791	20	806	1.71e-108	353
MS.gene03983.t1	MTR_1g064560	30.829	772	393	27	67	782	74	760	7.39e-80	273
MS.gene03983.t1	MTR_7g061220	40.303	330	171	9	483	803	88	400	2.08e-67	235
MS.gene03983.t1	MTR_5g075650	42.121	330	167	6	462	787	583	892	9.94e-67	239
MS.gene03983.t1	MTR_3g062590	42.643	333	164	9	455	781	581	892	3.02e-66	238

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene03983.t1	AT3G55950	50.801	811	362	18	4	795	13	805	0.0	707
MS.gene03983.t1	AT5G47850	35.013	794	401	26	32	797	40	746	3.09e-128	401
MS.gene03983.t1	AT3G59420	32.944	856	429	34	8	793	18	798	1.35e-111	361
MS.gene03983.t1	AT2G39180	28.757	845	423	33	19	781	20	767	1.12e-76	264
MS.gene03983.t1	AT3G58690	41.061	358	186	10	455	797	39	386	5.18e-69	233
MS.gene03983.t1	AT1G67720	45.246	305	146	8	488	790	601	886	1.10e-66	239
MS.gene03983.t1	AT2G37050	37.129	404	210	11	383	784	520	881	1.42e-65	236
MS.gene03983.t1	AT1G24030	42.258	310	149	7	483	781	50	340	7.98e-65	221
MS.gene03983.t1	AT2G37050	36.881	404	210	11	383	784	520	880	8.94e-65	234
MS.gene03983.t1	AT1G24030	42.258	310	149	7	483	781	64	354	1.49e-64	221

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Find 169 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATGTTTATGGTTT+AGG	0.236446	3.2:-54631339	MS.gene03983:CDS
AAAATGAGTGTTAGTGCTAT+TGG	0.450852	3.2:+54633394	None:intergenic
AAAATTGGTGCTGGCAGTTT+TGG	0.251551	3.2:-54631903	MS.gene03983:CDS
AAAATTTGTCTCTAATTTGT+TGG	0.345684	3.2:-54632499	MS.gene03983:CDS
AAATTTGTCTCTAATTTGTT+GGG	0.331818	3.2:-54632498	MS.gene03983:CDS
AACTATGCCGCAGATGGTGG+AGG	0.524141	3.2:+54633297	None:intergenic
AAGACAGAACCAGTATTCAA+AGG	0.588251	3.2:+54632698	None:intergenic
AAGCATTTGGTGAGACTAAT+TGG	0.235719	3.2:-54631741	MS.gene03983:CDS
AAGGCTACACCATAAGCATT+TGG	0.472430	3.2:-54631754	MS.gene03983:CDS
AATCAACGATAATCCGAAAT+CGG	0.486529	3.2:+54631461	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAACTAACTTGAGAGGT+TGG	-	chr3.2:54632155-54632174	MS.gene03983:CDS	30.0%
AAAATGAGTGTTAGTGCTAT+TGG	+	chr3.2:54631017-54631036	None:intergenic	30.0%
AATCAACGATAATCCGAAAT+CGG	+	chr3.2:54632950-54632969	None:intergenic	30.0%
AATCGTTTCTCAAACCTAAA+AGG	-	chr3.2:54631297-54631316	MS.gene03983:CDS	30.0%
AATGAGAATCAAAGTTGCAT+TGG	-	chr3.2:54632813-54632832	MS.gene03983:CDS	30.0%
AATGAGATTCAGAAACAGTT+TGG	-	chr3.2:54631572-54631591	MS.gene03983:CDS	30.0%
AGTTGAATCTGTTGAGATTA+TGG	-	chr3.2:54633251-54633270	MS.gene03983:CDS	30.0%
ATCGTTTCTCAAACCTAAAA+GGG	-	chr3.2:54631298-54631317	MS.gene03983:CDS	30.0%
ATGAGATTCAGAAACAGTTT+GGG	-	chr3.2:54631573-54631592	MS.gene03983:CDS	30.0%
CCTAAGAATCAATCTTCTAA+AGG	-	chr3.2:54632124-54632143	MS.gene03983:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	54631008	54633422	54631008	ID=MS.gene03983
chr3.2	mRNA	54631008	54633422	54631008	ID=MS.gene03983.t1;Parent=MS.gene03983
chr3.2	exon	54631008	54633422	54631008	ID=MS.gene03983.t1.exon1;Parent=MS.gene03983.t1
chr3.2	CDS	54631008	54633422	54631008	ID=cds.MS.gene03983.t1;Parent=MS.gene03983.t1

Gene Sequence

>MS.gene03983

ATGACACCAATAGCACTAACACTCATTTTCTCCTTCATTTTCACCATAACCACCGTCAACAGCCTCGGCACCGCCGCCACCACCACCGCCATCATCTACAACACCTCCACCATCTGCGGCATAGTTGCCGGTAAGCCCTACCAATACATTCAATGCTACCAAAACAAAAAACTCATTCCACCAATACTCCCCAACGTATCATTTCAGTCCATATCCGGTGGCCGGAGTTTCTTCTGCGGCCTCCGGTCTAATGGACTCAGCCTCCACTGTTGGAACACAAGGACACAAAAATCGTTTCTCAAACCTAAAAGGGTGTATCATAGTGAAAATGTTCAGTTGAGTGATGTAGCTGTTGGTGATGATCATGTTTGTGCTAGGGAGTTGCACTCAGGTGTGGTAAGGTGTTGGAGAGGCTATGGTGAAACTAATCGATTCAAGTTTCCTTCTCCTAGTGAAAATTTTCGGTTTCGAAGCCTTACTTGTGGTAGTGGTTTTTGTTGTGGAATATTGAAGGAGAATAGTAGAGTTTTTTGTTGGGGTGTAAATAGTAAAAAGGGTGTTGAAAATGAGATTCAGAAACAGTTTGGGAATTTATCAATGTCAACATTGGTTGCTGGTGTGTCACATGTTTGTGGTTTAACACTTCATGGTGTTTTGGTTTGTAAAGGAGAGAAGAACAATGATTCTGGTAAGTTAAATGTTCCTTTGAATACTGGTTCTGTCTTTTCAGGTCTTGCTTTAGGAAAAGATTTCACTTGTGGTATTAGAAGAAAGAATGGATTTGTTCTATGTTGGGGTGGTTTTTTTGATAGTGATGATGTGAATAATCATGTGATGATGAAAAGTGTTTCTTTTGAGTCAATTGTTGCTGGTTTGGATTTTGTTTGTGGTTTGAGTACTAAAAATTTGTCTCTAATTTGTTGGGGTAATACTAATGAGGATGTTAATGTTCCATTGGGAATGATTCTTCCTGGTCCATGTGTTAGTGATTCATGTAGCACTTGTGGTGTGTATCCAAATTCTGATTTTCTTTGTAATGGTTTTGGAAGCATTTGTTATCATTGTCGAACCGAGTTGCCATTCGCCGTGCCGTTGCTACCACCATCAACATCACCACCTAAGAATCAATCTTCTAAAGGTGATGAAGAAAAAACTAACTTGAGAGGTTGGAAATTGATGGTGTTTATGATTATTGGATCAATTGGTGCTTTTGCTGGTTTATGTACCATTCTTTATTTTCTTATGATTGGTGTAAGAAAATTGTTAAAGGCGAAAATCGATAATTCTGTTCAACCTACAAGTAGTGAATCCGATGATGCTTATGTTGATATAGCTCCAATGCCGAATATTGGAACGACGACATTAAGATCTTTTTCTAGTAAAAGACATAGCTCTAGTAGATTAAGAAGTGGTTCATCTTCAAAGCAATTAGATAGAACAGAAAATTTCACATTTTGGGAGTTAGTTGCAGCTAGTGACAATTTCTCATTGGGAAATAAAATTGGTGCTGGCAGTTTTGGATGTGTTTACAAAGGGAAGTTATTAGATGGTCGTGAAGTCGCGATTAAAAGAGGCGATACAAGCTTGAAGAAGAAGAAATTCCAAGAGAAGGAAACTGCTTTTGATTCTGAGTTAACATTGTTGTCAAGGCTACACCATAAGCATTTGGTGAGACTAATTGGTTTTTGTGAAGAAAATGATGAGAGGCTTTTGGTGTATGAGTACATGAGCAATGGATCATTACATGATCATTTGCATGATAAGAATAATGTTGAGAAAAATAGTAGCATTTTGAATTCATGGAGAATGAGAATCAAAGTTGCATTGGATGCTGCAAGAGGGATTGAGTACCTTCATAACTACGCGGTACCACCGATTATTCATCGAGACATTAAATCATCAAACATACTTCTTGATTCAAAATGGAATGCTAGGGTTTCCGATTTCGGATTATCGTTGATTTGGCAAGAAACCGAACAAGATTCGATGTCGAATATAAAAGCGGTCGGAACTGTTGGTTACATAGATCCTGAGTACTATGTTTTAAATGTTCTAACAACAAAAAGTGATGTTTATGGTTTAGGTGTTGTGATGTTGGAGCTTTTGACAGGTAAAAGAGCAGTGTTTAAAACTGAAGGTGGTTCAAGTCCTATTGGTGTAGTGGAATATGCAGGGCCAAAGATAGGTTCTGGAGAGGTGTGGAATTTGTTGGATCATAGAGTTGGAATACCAGAAGTGAATGAAGTTGAATCTGTTGAGATTATGGCTTATACTGCTATGCATTGTGTGAATTTGGAAGGAAAAGAGAGGCCTAATATGGTTGATGTTGTTGCTAATTTGGAGAGGGCTTTGGCTTTTCTTGAGGGTAGTCCTACTAGTTTTTCTATGTCTTCATTTTCTGCCACTCTTACATGA

Protein sequence

>MS.gene03983.t1

MTPIALTLIFSFIFTITTVNSLGTAATTTAIIYNTSTICGIVAGKPYQYIQCYQNKKLIPPILPNVSFQSISGGRSFFCGLRSNGLSLHCWNTRTQKSFLKPKRVYHSENVQLSDVAVGDDHVCARELHSGVVRCWRGYGETNRFKFPSPSENFRFRSLTCGSGFCCGILKENSRVFCWGVNSKKGVENEIQKQFGNLSMSTLVAGVSHVCGLTLHGVLVCKGEKNNDSGKLNVPLNTGSVFSGLALGKDFTCGIRRKNGFVLCWGGFFDSDDVNNHVMMKSVSFESIVAGLDFVCGLSTKNLSLICWGNTNEDVNVPLGMILPGPCVSDSCSTCGVYPNSDFLCNGFGSICYHCRTELPFAVPLLPPSTSPPKNQSSKGDEEKTNLRGWKLMVFMIIGSIGAFAGLCTILYFLMIGVRKLLKAKIDNSVQPTSSESDDAYVDIAPMPNIGTTTLRSFSSKRHSSSRLRSGSSSKQLDRTENFTFWELVAASDNFSLGNKIGAGSFGCVYKGKLLDGREVAIKRGDTSLKKKKFQEKETAFDSELTLLSRLHHKHLVRLIGFCEENDERLLVYEYMSNGSLHDHLHDKNNVEKNSSILNSWRMRIKVALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSKWNARVSDFGLSLIWQETEQDSMSNIKAVGTVGYIDPEYYVLNVLTTKSDVYGLGVVMLELLTGKRAVFKTEGGSSPIGVVEYAGPKIGSGEVWNLLDHRVGIPEVNEVESVEIMAYTAMHCVNLEGKERPNMVDVVANLERALAFLEGSPTSFSMSSFSATLT