AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039870.t1 MTR_3g022830 93.017 401 27 1 1 400 38 438 0.0 770
MS.gene039870.t1 MTR_5g009080 51.816 413 187 5 1 401 69 481 2.23e-145 422
MS.gene039870.t1 MTR_4g076140 48.544 412 201 5 1 401 61 472 4.70e-139 405
MS.gene039870.t1 MTR_3g022580 71.357 199 26 2 203 401 19 186 5.47e-94 280
MS.gene039870.t1 MTR_3g022005 94.845 97 5 0 305 401 32 128 9.62e-62 195
MS.gene039870.t1 MTR_7g027190 28.710 411 216 7 8 398 320 673 2.05e-49 177
MS.gene039870.t1 MTR_5g097480 29.000 400 223 7 8 398 197 544 2.81e-49 175
MS.gene039870.t1 MTR_1g029420 28.392 398 228 5 8 398 245 592 3.09e-49 176
MS.gene039870.t1 MTR_3g027430 73.950 119 10 1 69 187 183 280 5.13e-49 169
MS.gene039870.t1 MTR_3g027430 57.303 89 4 1 313 401 279 333 3.92e-23 99.4
MS.gene039870.t1 MTR_5g094450 26.781 407 241 7 1 398 174 532 3.61e-46 166
MS.gene039870.t1 MTR_3g021320 57.333 150 36 3 87 233 1 125 1.67e-45 153
MS.gene039870.t1 MTR_2g082090 30.383 339 181 5 65 397 289 578 2.82e-44 162
MS.gene039870.t1 MTR_3g089055 27.089 395 231 5 11 398 226 570 5.25e-44 161
MS.gene039870.t1 MTR_3g089055 27.089 395 231 5 11 398 221 565 6.21e-44 160
MS.gene039870.t1 MTR_3g056110 26.329 395 234 7 11 398 198 542 8.86e-42 154
MS.gene039870.t1 MTR_7g074650 26.914 405 226 9 1 398 451 792 1.21e-39 150
MS.gene039870.t1 MTR_4g133660 25.648 386 230 5 19 397 207 542 7.83e-39 146
MS.gene039870.t1 MTR_3g025350 42.723 213 38 5 138 349 1 130 1.80e-38 135
MS.gene039870.t1 MTR_4g102790 26.566 399 229 9 11 397 315 661 6.26e-38 145
MS.gene039870.t1 MTR_4g064160 27.047 403 236 7 3 397 331 683 1.10e-36 142
MS.gene039870.t1 MTR_8g442410 27.251 411 227 11 4 398 171 525 4.71e-36 139
MS.gene039870.t1 MTR_2g026250 24.810 395 240 6 11 398 252 596 3.54e-35 137
MS.gene039870.t1 MTR_4g064200 27.407 405 232 9 2 397 298 649 1.85e-34 135
MS.gene039870.t1 MTR_4g104020 25.806 341 196 4 63 398 232 520 2.42e-34 134
MS.gene039870.t1 MTR_2g097410 24.812 399 242 7 8 397 391 740 1.15e-33 133
MS.gene039870.t1 MTR_2g097467 26.667 405 234 9 2 397 303 653 6.33e-33 130
MS.gene039870.t1 MTR_7g062120 25.432 405 244 7 2 398 386 740 2.79e-32 129
MS.gene039870.t1 MTR_2g097350 26.225 408 235 11 1 397 287 639 1.07e-31 127
MS.gene039870.t1 MTR_2g097390 24.570 407 243 9 1 397 288 640 1.20e-31 127
MS.gene039870.t1 MTR_4g064150 25.366 410 240 10 2 397 375 732 1.43e-31 127
MS.gene039870.t1 MTR_2g097310 25.558 403 244 8 1 397 285 637 1.53e-31 126
MS.gene039870.t1 MTR_4g077760 26.799 403 223 11 8 398 213 555 1.36e-30 123
MS.gene039870.t1 MTR_2g097473 25.990 404 238 8 2 397 303 653 3.47e-30 122
MS.gene039870.t1 MTR_4g064120 24.752 404 242 10 2 393 268 621 4.65e-30 122
MS.gene039870.t1 MTR_2g034250 27.737 411 224 11 8 399 230 586 8.32e-30 121
MS.gene039870.t1 MTR_4g064180 24.566 403 244 9 2 393 268 621 2.58e-29 120
MS.gene039870.t1 MTR_2g034280 27.139 409 226 10 8 399 223 576 5.70e-29 119
MS.gene039870.t1 MTR_2g097463 25.743 404 239 8 2 397 304 654 6.48e-28 116
MS.gene039870.t1 MTR_2g034260 26.225 408 227 10 11 399 233 585 1.77e-27 114
MS.gene039870.t1 MTR_2g097380 24.129 402 222 8 1 397 237 560 2.67e-27 114
MS.gene039870.t1 MTR_1g069725 24.747 396 230 11 11 400 132 465 4.18e-27 112
MS.gene039870.t1 MTR_3g065980 36.025 161 89 3 253 399 381 541 1.71e-24 105
MS.gene039870.t1 MTR_3g065980 29.949 197 123 5 1 191 185 372 3.71e-21 95.9
MS.gene039870.t1 MTR_5g015490 22.139 402 251 9 11 398 137 490 5.12e-24 103
MS.gene039870.t1 MTR_4g097080 22.637 402 243 10 11 398 156 503 1.43e-23 102
MS.gene039870.t1 MTR_2g089100 24.876 402 253 11 11 397 75 442 6.05e-23 100
MS.gene039870.t1 MTR_3g025340 72.131 61 17 0 45 105 9 69 8.19e-22 88.6
MS.gene039870.t1 MTR_1g106590 45.455 99 53 1 1 98 143 241 1.84e-21 94.7
MS.gene039870.t1 MTR_1g106590 45.745 94 48 2 213 303 247 340 6.30e-13 69.7
MS.gene039870.t1 MTR_1g096030 23.474 426 238 16 3 398 92 459 9.97e-21 94.0
MS.gene039870.t1 MTR_7g109580 24.688 401 239 13 8 399 209 555 1.75e-20 94.0
MS.gene039870.t1 MTR_7g057230 24.848 330 194 7 71 397 378 656 1.10e-19 91.7
MS.gene039870.t1 MTR_5g015950 23.410 346 228 8 65 397 124 445 2.83e-19 89.7
MS.gene039870.t1 MTR_3g053270 23.410 346 228 8 65 397 124 445 2.83e-19 89.7
MS.gene039870.t1 MTR_4g095500 22.619 420 264 10 8 397 79 467 3.78e-19 89.4
MS.gene039870.t1 MTR_1g086970 24.615 325 184 8 81 399 210 479 4.28e-19 89.4
MS.gene039870.t1 MTR_5g058860 21.696 401 245 8 14 397 148 496 1.07e-18 88.2
MS.gene039870.t1 MTR_3g021090 54.878 82 33 2 148 226 333 413 1.47e-17 84.3
MS.gene039870.t1 MTR_6g047750 28.652 178 108 5 229 398 496 662 1.35e-14 75.9
MS.gene039870.t1 MTR_4g076020 33.333 144 93 3 256 398 288 429 1.37e-13 72.4
MS.gene039870.t1 MTR_2g099110 21.687 415 238 14 11 398 97 451 9.22e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039870.t1 AT1G50420 47.700 413 204 5 1 401 70 482 5.64e-131 385
MS.gene039870.t1 AT1G66350 28.571 406 221 9 1 401 168 509 2.52e-51 180
MS.gene039870.t1 AT5G48150 29.146 398 226 5 8 398 142 490 7.81e-51 178
MS.gene039870.t1 AT5G48150 29.146 398 226 5 8 398 142 490 7.81e-51 178
MS.gene039870.t1 AT5G48150 29.146 398 226 5 8 398 142 490 7.81e-51 178
MS.gene039870.t1 AT5G48150 29.146 398 226 5 8 398 142 490 7.81e-51 178
MS.gene039870.t1 AT1G50600 28.101 395 227 5 11 398 182 526 1.23e-47 170
MS.gene039870.t1 AT2G04890 29.870 385 216 7 16 398 81 413 1.72e-47 167
MS.gene039870.t1 AT1G50600 28.101 395 227 5 11 398 257 601 3.92e-47 170
MS.gene039870.t1 AT1G50600 28.101 395 227 5 11 398 253 597 4.12e-47 170
MS.gene039870.t1 AT3G03450 26.650 409 226 10 4 399 199 546 4.65e-46 166
MS.gene039870.t1 AT1G14920 27.901 405 212 10 6 399 195 530 4.36e-45 163
MS.gene039870.t1 AT2G01570 28.205 390 206 9 21 399 256 582 2.39e-44 162
MS.gene039870.t1 AT1G21450 27.273 396 230 6 11 398 248 593 1.67e-40 152
MS.gene039870.t1 AT4G17230 25.879 398 238 5 8 398 178 525 3.33e-40 150
MS.gene039870.t1 AT4G17230 25.879 398 238 5 8 398 178 525 3.33e-40 150
MS.gene039870.t1 AT3G54220 27.157 394 226 8 11 400 316 652 1.81e-38 147
MS.gene039870.t1 AT1G63100 24.378 402 235 6 14 397 278 628 3.07e-37 143
MS.gene039870.t1 AT1G63100 24.378 402 235 6 14 397 303 653 3.34e-37 143
MS.gene039870.t1 AT2G29060 26.471 408 237 10 2 397 298 654 1.15e-33 133
MS.gene039870.t1 AT2G29060 26.471 408 237 10 2 397 335 691 1.33e-33 133
MS.gene039870.t1 AT1G07530 24.755 408 242 10 2 397 410 764 4.41e-32 129
MS.gene039870.t1 AT5G59450 26.406 409 238 11 2 398 241 598 6.56e-30 122
MS.gene039870.t1 AT5G66770 26.271 354 196 7 57 398 284 584 5.40e-29 119
MS.gene039870.t1 AT3G46600 25.564 399 238 7 8 398 24 371 2.28e-28 115
MS.gene039870.t1 AT1G07520 23.913 414 240 10 4 397 170 528 4.02e-28 116
MS.gene039870.t1 AT1G07520 23.913 414 240 10 4 397 170 528 4.02e-28 116
MS.gene039870.t1 AT5G41920 25.495 404 236 10 1 398 56 400 7.87e-28 114
MS.gene039870.t1 AT1G07520 23.913 414 240 10 4 397 334 692 1.03e-27 115
MS.gene039870.t1 AT1G07520 23.913 414 240 10 4 397 335 693 1.06e-27 115
MS.gene039870.t1 AT1G55580 24.471 425 226 9 17 398 73 445 1.19e-27 114
MS.gene039870.t1 AT3G46600 26.316 399 235 9 8 398 200 547 2.56e-27 114
MS.gene039870.t1 AT3G46600 25.564 399 238 7 8 398 232 579 6.01e-27 113
MS.gene039870.t1 AT3G50650 24.752 404 229 8 11 398 198 542 6.37e-27 112
MS.gene039870.t1 AT2G37650 25.686 401 234 11 8 398 367 713 6.41e-25 107
MS.gene039870.t1 AT2G37650 25.686 401 234 11 8 398 355 701 7.33e-25 107
MS.gene039870.t1 AT2G29065 23.301 412 243 10 7 397 268 627 3.36e-24 105
MS.gene039870.t1 AT5G17490 29.016 193 125 6 4 191 176 361 4.20e-22 98.6
MS.gene039870.t1 AT5G17490 34.000 150 96 2 252 399 369 517 4.49e-22 98.6
MS.gene039870.t1 AT5G52510 22.705 414 236 11 8 398 288 640 5.65e-22 98.6
MS.gene039870.t1 AT4G37650 23.077 416 243 13 8 398 166 529 1.53e-21 97.1

Find 62 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAAATTTGCTAATTAT+TGG 0.115232 3.1:+12617044 None:intergenic
CTGTATCGGCCTGGAAATTT+AGG 0.200404 3.1:-12616335 MS.gene039870:CDS
GACAACCGAAGCAGAGATTT+TGG 0.213726 3.1:-12617087 MS.gene039870:CDS
CCGCTCTTTCTGAAAATTAC+AGG 0.269016 3.1:-12617155 MS.gene039870:CDS
AAACTCGAGAGCATGCTTCT+TGG 0.323417 3.1:-12616588 MS.gene039870:CDS
TTAATAAAGATCCCCATCTT+AGG 0.343003 3.1:+12616774 None:intergenic
TTATCATCTCCTAAATTTCC+AGG 0.357387 3.1:+12616326 None:intergenic
ATGATTGTTTGCTTGTCTGC+TGG 0.372800 3.1:-12616377 MS.gene039870:CDS
TTTAGGTGCTTCACCTAAGA+TGG 0.374066 3.1:-12616787 MS.gene039870:CDS
TCAGTAATCACTAAAAGTTT+TGG 0.380800 3.1:+12616732 None:intergenic
TAATTGCTTGATTTATGATC+AGG 0.388620 3.1:+12617285 None:intergenic
AAGAGGTGATAATGCTGAAT+CGG 0.390322 3.1:+12616812 None:intergenic
GGCATGAGAAGCTCGAGAAA+TGG 0.413133 3.1:-12616515 MS.gene039870:CDS
CCTTGCCACTGATGACGAAA+TGG 0.436802 3.1:-12616946 MS.gene039870:CDS
TCTGAATGGATGTAATTTAA+CGG 0.442967 3.1:-12616697 MS.gene039870:CDS
ATTATTGGATTGAACTGTAA+AGG 0.444269 3.1:+12617059 None:intergenic
AAAATCCAAAATCTCTGCTT+CGG 0.452011 3.1:+12617082 None:intergenic
ACAAACTTTAAAGAAACGTC+CGG 0.459532 3.1:-12617183 MS.gene039870:CDS
GACGAAATGGTCTCCTCAGC+AGG 0.460998 3.1:-12616933 MS.gene039870:CDS
TTCAGAAAGAGCGGACCTCC+CGG 0.475904 3.1:+12617164 None:intergenic
AGAGGTGATAATGCTGAATC+GGG 0.492776 3.1:+12616813 None:intergenic
TTAGGTGCTTCACCTAAGAT+GGG 0.494167 3.1:-12616786 MS.gene039870:CDS
GAAAACTTGCCTGTCAAGAC+AGG 0.495316 3.1:-12617011 MS.gene039870:CDS
GAACAGGAATCAAATCTGAA+TGG 0.501626 3.1:-12616711 MS.gene039870:CDS
ATTTATCCATTGCGCTGGCT+CGG 0.505420 3.1:+12617211 None:intergenic
ATTTCATCACCTCATGGTAA+TGG 0.506040 3.1:-12617473 MS.gene039870:CDS
TGGTAATGGTGTACAAAGAA+TGG 0.507522 3.1:-12617459 MS.gene039870:CDS
TCAAGCAATTATTGAATCGA+TGG 0.507864 3.1:-12617273 MS.gene039870:CDS
AGCTCGAGAAATGGATTCGA+AGG 0.509213 3.1:-12616506 MS.gene039870:CDS
TGAATCGATGGAATGTGAAA+AGG 0.512101 3.1:-12617261 MS.gene039870:CDS
ACAGCGTCTCCTGTCTTGAC+AGG 0.515953 3.1:+12617002 None:intergenic
AGGTACCTTTGAGTTACAAT+GGG 0.518466 3.1:-12616461 MS.gene039870:CDS
AAGAACATTATTACTTGTGA+GGG 0.529634 3.1:-12616555 MS.gene039870:CDS
TTGTGAGGGAGTCGATAGAA+AGG 0.541472 3.1:-12616541 MS.gene039870:CDS
AAGGTACCTTTGAGTTACAA+TGG 0.542489 3.1:-12616462 MS.gene039870:CDS
ATAAGATTTATCCATTGCGC+TGG 0.546863 3.1:+12617206 None:intergenic
GTCACTTTCAGTGAAGCACT+TGG 0.547008 3.1:-12617437 MS.gene039870:CDS
ATTGCGCTGGCTCGGAACAA+TGG 0.551742 3.1:+12617219 None:intergenic
AGGAATTCATGAAAAGAAAG+AGG 0.554891 3.1:-12617135 MS.gene039870:CDS
AAAGAACATTATTACTTGTG+AGG 0.556889 3.1:-12616556 MS.gene039870:CDS
TCTCAGATTTCATCACCTCA+TGG 0.558265 3.1:-12617479 MS.gene039870:CDS
GAAAGATGCCGCACCTGCTG+AGG 0.560909 3.1:+12616920 None:intergenic
TACCTTTGAGTTACAATGGG+AGG 0.570596 3.1:-12616458 MS.gene039870:CDS
TATGCAGAGAACAGCGCACA+TGG 0.572811 3.1:-12616895 MS.gene039870:CDS
ATCCTCCCATTGTAACTCAA+AGG 0.576632 3.1:+12616456 None:intergenic
GAACAGCGCACATGGGTCAA+AGG 0.581580 3.1:-12616887 MS.gene039870:CDS
TTGAGAGCTTTGTAAACACC+AGG 0.584040 3.1:+12617392 None:intergenic
TGAAATGACTAGACTTGAGA+AGG 0.588497 3.1:-12616481 MS.gene039870:CDS
TAGGTGCTTCACCTAAGATG+GGG 0.607732 3.1:-12616785 MS.gene039870:CDS
AATGGTCTCCTCAGCAGGTG+CGG 0.608238 3.1:-12616928 MS.gene039870:CDS
CCATTTCGTCATCAGTGGCA+AGG 0.614165 3.1:+12616946 None:intergenic
ATTGTTCCGAGCCAGCGCAA+TGG 0.617587 3.1:-12617217 MS.gene039870:CDS
ACTGATGTTCTCGTAACAGT+AGG 0.623170 3.1:+12616621 None:intergenic
CAAACTTTAAAGAAACGTCC+GGG 0.635686 3.1:-12617182 MS.gene039870:CDS
GGAGACCATTTCGTCATCAG+TGG 0.638809 3.1:+12616941 None:intergenic
GTCAAAGGACTTTCGCAGAG+TGG 0.652841 3.1:-12616872 MS.gene039870:CDS
AAGATAGTCAAACATTTACC+TGG 0.655828 3.1:-12617410 MS.gene039870:CDS
AGGGAGTCGATAGAAAGGAA+AGG 0.670114 3.1:-12616536 MS.gene039870:CDS
CTTTGTACACCATTACCATG+AGG 0.671867 3.1:+12617464 None:intergenic
ATGCAGAGAACAGCGCACAT+GGG 0.695050 3.1:-12616894 MS.gene039870:CDS
ACTTTAAAGAAACGTCCGGG+AGG 0.713179 3.1:-12617179 MS.gene039870:CDS
CAGGCCGATACAGAAAACAG+TGG 0.754690 3.1:+12616345 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTTCAAATTTGCTAATTAT+TGG + chr3.1:12616800-12616819 None:intergenic 20.0%
! AAAGAACATTATTACTTGTG+AGG - chr3.1:12617285-12617304 MS.gene039870:CDS 25.0%
! AAGAACATTATTACTTGTGA+GGG - chr3.1:12617286-12617305 MS.gene039870:CDS 25.0%
! AGGTATGAAAACATCAAAAA+AGG + chr3.1:12616539-12616558 None:intergenic 25.0%
! ATTATTGGATTGAACTGTAA+AGG + chr3.1:12616785-12616804 None:intergenic 25.0%
! TAATTGCTTGATTTATGATC+AGG + chr3.1:12616559-12616578 None:intergenic 25.0%
! TCTGAATGGATGTAATTTAA+CGG - chr3.1:12617144-12617163 MS.gene039870:CDS 25.0%
!! TCAGTAATCACTAAAAGTTT+TGG + chr3.1:12617112-12617131 None:intergenic 25.0%
!!! CATAGAAGTATTTTTGAACA+AGG + chr3.1:12616508-12616527 None:intergenic 25.0%
AAAATCCAAAATCTCTGCTT+CGG + chr3.1:12616762-12616781 None:intergenic 30.0%
AAGATAGTCAAACATTTACC+TGG - chr3.1:12616431-12616450 MS.gene039870:CDS 30.0%
AGGAATTCATGAAAAGAAAG+AGG - chr3.1:12616706-12616725 MS.gene039870:CDS 30.0%
TCAAGCAATTATTGAATCGA+TGG - chr3.1:12616568-12616587 MS.gene039870:CDS 30.0%
TTAATAAAGATCCCCATCTT+AGG + chr3.1:12617070-12617089 None:intergenic 30.0%
! ACAAACTTTAAAGAAACGTC+CGG - chr3.1:12616658-12616677 MS.gene039870:CDS 30.0%
! ACTTTTAGTGATTACTGAAC+AGG - chr3.1:12617114-12617133 MS.gene039870:CDS 30.0%
!!! GCATTATCACCTCTTTTTTT+AGG - chr3.1:12617037-12617056 MS.gene039870:CDS 30.0%
ATAAGATTTATCCATTGCGC+TGG + chr3.1:12616638-12616657 None:intergenic 35.0%
ATTTCATCACCTCATGGTAA+TGG - chr3.1:12616368-12616387 MS.gene039870:CDS 35.0%
GAACAGGAATCAAATCTGAA+TGG - chr3.1:12617130-12617149 MS.gene039870:CDS 35.0%
TGAAATGACTAGACTTGAGA+AGG - chr3.1:12617360-12617379 MS.gene039870:CDS 35.0%
TGAATCGATGGAATGTGAAA+AGG - chr3.1:12616580-12616599 MS.gene039870:CDS 35.0%
! AAGAGGTGATAATGCTGAAT+CGG + chr3.1:12617032-12617051 None:intergenic 35.0%
! AAGGTACCTTTGAGTTACAA+TGG - chr3.1:12617379-12617398 MS.gene039870:CDS 35.0%
! AGGTACCTTTGAGTTACAAT+GGG - chr3.1:12617380-12617399 MS.gene039870:CDS 35.0%
! CAAACTTTAAAGAAACGTCC+GGG - chr3.1:12616659-12616678 MS.gene039870:CDS 35.0%
! CCTGTAATTTTCAGAAAGAG+CGG + chr3.1:12616689-12616708 None:intergenic 35.0%
! TGAAGACGATGATATTTTCG+AGG + chr3.1:12616477-12616496 None:intergenic 35.0%
!! GATCGAGCATTGTACTTTTA+CGG - chr3.1:12617175-12617194 MS.gene039870:CDS 35.0%
!! TGGTAATGGTGTACAAAGAA+TGG - chr3.1:12616382-12616401 MS.gene039870:CDS 35.0%
ACTGATGTTCTCGTAACAGT+AGG + chr3.1:12617223-12617242 None:intergenic 40.0%
ATCCTCCCATTGTAACTCAA+AGG + chr3.1:12617388-12617407 None:intergenic 40.0%
ATGATTGTTTGCTTGTCTGC+TGG - chr3.1:12617464-12617483 MS.gene039870:CDS 40.0%
CTTTGTACACCATTACCATG+AGG + chr3.1:12616380-12616399 None:intergenic 40.0%
TCTCAGATTTCATCACCTCA+TGG - chr3.1:12616362-12616381 MS.gene039870:CDS 40.0%
TTAGGTGCTTCACCTAAGAT+GGG - chr3.1:12617055-12617074 MS.gene039870:CDS 40.0%
TTTAGGTGCTTCACCTAAGA+TGG - chr3.1:12617054-12617073 MS.gene039870:CDS 40.0%
! AGAGGTGATAATGCTGAATC+GGG + chr3.1:12617031-12617050 None:intergenic 40.0%
! CAGACCACTGTTTTCTGTAT+CGG - chr3.1:12617492-12617511 MS.gene039870:CDS 40.0%
! CCGCTCTTTCTGAAAATTAC+AGG - chr3.1:12616686-12616705 MS.gene039870:CDS 40.0%
! GGTGAAGCACCTAAAAAAAG+AGG + chr3.1:12617049-12617068 None:intergenic 40.0%
! TACCTTTGAGTTACAATGGG+AGG - chr3.1:12617383-12617402 MS.gene039870:CDS 40.0%
! TTGAGAGCTTTGTAAACACC+AGG + chr3.1:12616452-12616471 None:intergenic 40.0%
AGGGAGTCGATAGAAAGGAA+AGG - chr3.1:12617305-12617324 MS.gene039870:CDS 45.0%
GAAAACTTGCCTGTCAAGAC+AGG - chr3.1:12616830-12616849 MS.gene039870:CDS 45.0%
TAGGTGCTTCACCTAAGATG+GGG - chr3.1:12617056-12617075 MS.gene039870:CDS 45.0%
TTGTGAGGGAGTCGATAGAA+AGG - chr3.1:12617300-12617319 MS.gene039870:CDS 45.0%
! AAACTCGAGAGCATGCTTCT+TGG - chr3.1:12617253-12617272 MS.gene039870:CDS 45.0%
! ACTTTAAAGAAACGTCCGGG+AGG - chr3.1:12616662-12616681 MS.gene039870:CDS 45.0%
! AGCTCGAGAAATGGATTCGA+AGG - chr3.1:12617335-12617354 MS.gene039870:CDS 45.0%
! CTGTATCGGCCTGGAAATTT+AGG - chr3.1:12617506-12617525 MS.gene039870:CDS 45.0%
! GACAACCGAAGCAGAGATTT+TGG - chr3.1:12616754-12616773 MS.gene039870:CDS 45.0%
! GTCACTTTCAGTGAAGCACT+TGG - chr3.1:12616404-12616423 MS.gene039870:CDS 45.0%
!! ATTTATCCATTGCGCTGGCT+CGG + chr3.1:12616633-12616652 None:intergenic 45.0%
!!! CGGTTCACTTTTTGACTGCT+TGG - chr3.1:12617195-12617214 MS.gene039870:CDS 45.0%
ATGCAGAGAACAGCGCACAT+GGG - chr3.1:12616947-12616966 MS.gene039870:CDS 50.0%
CAGGCCGATACAGAAAACAG+TGG + chr3.1:12617499-12617518 None:intergenic 50.0%
CCATTTCGTCATCAGTGGCA+AGG + chr3.1:12616898-12616917 None:intergenic 50.0%
GGAGACCATTTCGTCATCAG+TGG + chr3.1:12616903-12616922 None:intergenic 50.0%
GGCATGAGAAGCTCGAGAAA+TGG - chr3.1:12617326-12617345 MS.gene039870:CDS 50.0%
GTCAAAGGACTTTCGCAGAG+TGG - chr3.1:12616969-12616988 MS.gene039870:CDS 50.0%
TATGCAGAGAACAGCGCACA+TGG - chr3.1:12616946-12616965 MS.gene039870:CDS 50.0%
! CCTTGCCACTGATGACGAAA+TGG - chr3.1:12616895-12616914 MS.gene039870:CDS 50.0%
!! CACTGTTTTCTGTATCGGCC+TGG - chr3.1:12617497-12617516 MS.gene039870:CDS 50.0%
AATGGTCTCCTCAGCAGGTG+CGG - chr3.1:12616913-12616932 MS.gene039870:CDS 55.0%
ACAGCGTCTCCTGTCTTGAC+AGG + chr3.1:12616842-12616861 None:intergenic 55.0%
ATTGTTCCGAGCCAGCGCAA+TGG - chr3.1:12616624-12616643 MS.gene039870:CDS 55.0%
GAACAGCGCACATGGGTCAA+AGG - chr3.1:12616954-12616973 MS.gene039870:CDS 55.0%
GACGAAATGGTCTCCTCAGC+AGG - chr3.1:12616908-12616927 MS.gene039870:CDS 55.0%
TTCAGAAAGAGCGGACCTCC+CGG + chr3.1:12616680-12616699 None:intergenic 55.0%
!! ATTGCGCTGGCTCGGAACAA+TGG + chr3.1:12616625-12616644 None:intergenic 55.0%
GAAAGATGCCGCACCTGCTG+AGG + chr3.1:12616924-12616943 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 12616329 12617534 12616329 ID=MS.gene039870
chr3.1 mRNA 12616329 12617534 12616329 ID=MS.gene039870.t1;Parent=MS.gene039870
chr3.1 exon 12616329 12617534 12616329 ID=MS.gene039870.t1.exon1;Parent=MS.gene039870.t1
chr3.1 CDS 12616329 12617534 12616329 ID=cds.MS.gene039870.t1;Parent=MS.gene039870.t1
Gene Sequence

>MS.gene039870

ATGAAAAATGCTGATATTGGACTTGAGTATATTTCTCAGATTTCATCACCTCATGGTAATGGTGTACAAAGAATGGTCACTTTCAGTGAAGCACTTGGATACAAGATAGTCAAACATTTACCTGGTGTTTACAAAGCTCTCAATTCCTCGAAAATATCATCGTCTTCAGACGACATCCTTGTTCAAAAATACTTCTATGATCTGTGTCCTTTTTTGATGTTTTCATACCTGATCATAAATCAAGCAATTATTGAATCGATGGAATGTGAAAAGGTCGTTCATATTATTGATCTCCATTGTTCCGAGCCAGCGCAATGGATAAATCTTATACAAACTTTAAAGAAACGTCCGGGAGGTCCGCTCTTTCTGAAAATTACAGGAATTCATGAAAAGAAAGAGGTATTAGAGCAAATGAGCTTTCATTTGACAACCGAAGCAGAGATTTTGGATTTTCCTTTACAGTTCAATCCAATAATTAGCAAATTTGAAGATGTCGATTTCGAAAACTTGCCTGTCAAGACAGGAGACGCTGTTGCAATTACTTCTGTTCTTCAGCTGCATTCTCTCCTTGCCACTGATGACGAAATGGTCTCCTCAGCAGGTGCGGCATCTTTCAATATGCAGAGAACAGCGCACATGGGTCAAAGGACTTTCGCAGAGTGGCTAGAGAGAGACATGATCAATGCATATATCTTGAGTCCCGATTCAGCATTATCACCTCTTTTTTTAGGTGCTTCACCTAAGATGGGGATCTTTATTAACGCTATGAGAAAACTACAACCAAAACTTTTAGTGATTACTGAACAGGAATCAAATCTGAATGGATGTAATTTAACGGAGAGAATCGATCGAGCATTGTACTTTTACGGTTCACTTTTTGACTGCTTGGAACCTACTGTTACGAGAACATCAGTCGAGAGACAAAAACTCGAGAGCATGCTTCTTGGAGAGCAAATAAAGAACATTATTACTTGTGAGGGAGTCGATAGAAAGGAAAGGCATGAGAAGCTCGAGAAATGGATTCGAAGGATTGAAATGACTAGACTTGAGAAGGTACCTTTGAGTTACAATGGGAGGATAGAAGTAACTAATTTATTGCAGCGATATAGTCACAAGTACAAGTTTAAAGAAGAACATGATTGTTTGCTTGTCTGCTGGAGTGACAGACCACTGTTTTCTGTATCGGCCTGGAAATTTAGGAGATGA
Protein sequence

>MS.gene039870.t1

MKNADIGLEYISQISSPHGNGVQRMVTFSEALGYKIVKHLPGVYKALNSSKISSSSDDILVQKYFYDLCPFLMFSYLIINQAIIESMECEKVVHIIDLHCSEPAQWINLIQTLKKRPGGPLFLKITGIHEKKEVLEQMSFHLTTEAEILDFPLQFNPIISKFEDVDFENLPVKTGDAVAITSVLQLHSLLATDDEMVSSAGAASFNMQRTAHMGQRTFAEWLERDMINAYILSPDSALSPLFLGASPKMGIFINAMRKLQPKLLVITEQESNLNGCNLTERIDRALYFYGSLFDCLEPTVTRTSVERQKLESMLLGEQIKNIITCEGVDRKERHEKLEKWIRRIEMTRLEKVPLSYNGRIEVTNLLQRYSHKYKFKEEHDCLLVCWSDRPLFSVSAWKFRR