AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039871

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039871.t1 MTR_3g022830 94.266 436 24 1 9 444 4 438 0.0 848
MS.gene039871.t1 MTR_5g009080 52.222 450 202 6 7 444 32 480 1.38e-157 454
MS.gene039871.t1 MTR_4g076140 47.098 448 226 4 7 444 25 471 8.22e-147 427
MS.gene039871.t1 MTR_3g022580 71.728 191 23 2 254 444 26 185 8.78e-91 273
MS.gene039871.t1 MTR_3g022005 91.667 96 8 0 349 444 32 127 2.08e-58 188
MS.gene039871.t1 MTR_5g097480 29.977 427 224 9 31 442 178 544 2.66e-55 192
MS.gene039871.t1 MTR_1g029420 29.904 418 236 7 31 442 226 592 2.25e-54 191
MS.gene039871.t1 MTR_2g082090 30.144 418 233 8 31 441 213 578 5.20e-51 181
MS.gene039871.t1 MTR_3g027430 51.142 219 45 8 13 231 124 280 3.64e-50 173
MS.gene039871.t1 MTR_3g027430 56.818 88 4 1 357 444 279 332 3.48e-22 97.4
MS.gene039871.t1 MTR_7g027190 28.146 437 225 10 31 442 301 673 1.12e-49 179
MS.gene039871.t1 MTR_5g094450 26.905 420 250 7 31 442 162 532 2.25e-49 176
MS.gene039871.t1 MTR_3g089055 28.000 425 249 7 24 442 192 565 3.98e-48 173
MS.gene039871.t1 MTR_3g089055 28.000 425 249 7 24 442 197 570 4.21e-48 173
MS.gene039871.t1 MTR_3g056110 26.526 426 240 7 31 442 176 542 1.45e-47 171
MS.gene039871.t1 MTR_7g074650 27.981 411 236 7 33 442 441 792 7.82e-47 172
MS.gene039871.t1 MTR_4g133660 27.014 422 242 9 31 441 176 542 6.63e-44 161
MS.gene039871.t1 MTR_3g021320 55.333 150 39 3 131 277 1 125 5.47e-43 148
MS.gene039871.t1 MTR_2g026250 26.424 439 256 9 19 442 210 596 5.83e-43 160
MS.gene039871.t1 MTR_8g442410 28.571 427 233 11 31 442 156 525 8.64e-42 155
MS.gene039871.t1 MTR_4g102790 26.303 422 247 9 31 441 293 661 4.46e-40 152
MS.gene039871.t1 MTR_4g064160 27.446 419 244 8 31 441 317 683 1.34e-39 151
MS.gene039871.t1 MTR_2g097467 28.162 419 238 9 31 441 290 653 3.08e-39 150
MS.gene039871.t1 MTR_2g097410 25.776 419 253 7 31 441 372 740 2.21e-38 148
MS.gene039871.t1 MTR_4g104020 25.708 424 250 8 31 442 150 520 3.96e-38 145
MS.gene039871.t1 MTR_4g064200 27.924 419 240 8 31 441 285 649 6.01e-38 146
MS.gene039871.t1 MTR_2g097310 26.905 420 243 9 31 441 273 637 9.61e-38 145
MS.gene039871.t1 MTR_3g025350 40.566 212 42 5 182 392 1 129 9.69e-38 134
MS.gene039871.t1 MTR_7g062120 26.667 420 248 8 31 442 373 740 1.46e-37 145
MS.gene039871.t1 MTR_4g064150 26.714 423 246 9 31 441 362 732 1.61e-37 145
MS.gene039871.t1 MTR_2g097350 27.130 446 259 11 6 441 250 639 1.79e-37 145
MS.gene039871.t1 MTR_2g097390 25.721 416 253 8 31 441 276 640 1.57e-36 142
MS.gene039871.t1 MTR_4g064120 25.238 420 252 8 31 439 255 623 1.85e-36 142
MS.gene039871.t1 MTR_2g097473 27.512 418 242 8 31 441 290 653 3.03e-36 141
MS.gene039871.t1 MTR_4g076020 28.641 412 223 11 33 442 87 429 2.79e-35 136
MS.gene039871.t1 MTR_4g064180 25.476 420 251 8 31 439 255 623 4.36e-35 138
MS.gene039871.t1 MTR_2g097463 27.273 418 243 8 31 441 291 654 1.45e-33 134
MS.gene039871.t1 MTR_1g069725 25.761 427 249 11 23 444 102 465 2.25e-32 128
MS.gene039871.t1 MTR_2g034250 27.209 430 242 9 31 443 211 586 3.49e-32 129
MS.gene039871.t1 MTR_4g077760 26.807 429 241 13 26 442 188 555 6.04e-32 128
MS.gene039871.t1 MTR_2g034280 27.273 429 240 10 31 443 204 576 2.05e-31 127
MS.gene039871.t1 MTR_2g097380 24.634 410 228 8 35 441 229 560 1.49e-29 121
MS.gene039871.t1 MTR_2g034260 26.218 431 244 8 31 443 211 585 3.04e-29 120
MS.gene039871.t1 MTR_2g089100 24.146 439 256 11 31 441 53 442 7.28e-28 115
MS.gene039871.t1 MTR_3g065980 39.130 161 84 3 297 443 381 541 1.21e-27 115
MS.gene039871.t1 MTR_3g065980 29.048 210 134 5 31 235 173 372 1.77e-22 100
MS.gene039871.t1 MTR_4g097080 22.197 446 278 11 10 442 114 503 5.47e-27 113
MS.gene039871.t1 MTR_5g015490 22.588 425 267 9 31 442 115 490 6.97e-27 113
MS.gene039871.t1 MTR_1g106590 47.748 111 57 1 32 142 132 241 7.90e-27 110
MS.gene039871.t1 MTR_1g106590 50.000 84 40 1 266 347 257 340 4.81e-14 73.6
MS.gene039871.t1 MTR_1g096030 25.054 459 252 17 15 442 62 459 9.18e-26 109
MS.gene039871.t1 MTR_5g058860 23.881 402 237 9 56 441 148 496 6.59e-24 104
MS.gene039871.t1 MTR_4g095500 23.702 443 271 11 31 441 60 467 1.37e-23 103
MS.gene039871.t1 MTR_3g072710 23.864 440 252 14 28 441 117 499 2.21e-23 102
MS.gene039871.t1 MTR_7g057230 24.350 423 247 12 31 441 295 656 3.49e-21 96.7
MS.gene039871.t1 MTR_7g109580 23.750 400 232 12 57 443 216 555 3.73e-20 93.6
MS.gene039871.t1 MTR_3g025340 69.355 62 18 1 88 149 9 69 3.07e-19 82.0
MS.gene039871.t1 MTR_3g021090 44.186 129 57 6 145 270 297 413 9.39e-19 88.2
MS.gene039871.t1 MTR_5g015950 21.609 435 292 12 31 441 36 445 2.56e-17 84.3
MS.gene039871.t1 MTR_3g053270 21.609 435 292 12 31 441 36 445 2.56e-17 84.3
MS.gene039871.t1 MTR_8g093070 23.678 397 225 13 57 441 165 495 3.57e-16 80.9
MS.gene039871.t1 MTR_1g086970 22.943 401 231 13 61 443 139 479 5.93e-16 80.1
MS.gene039871.t1 MTR_6g047750 30.719 153 94 2 296 442 516 662 5.98e-16 80.5
MS.gene039871.t1 MTR_2g099110 26.214 206 141 5 31 227 75 278 6.01e-13 70.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039871.t1 AT1G50420 46.993 449 226 5 7 444 34 481 6.64e-140 409
MS.gene039871.t1 AT5G48150 29.792 433 239 6 16 442 117 490 4.54e-57 196
MS.gene039871.t1 AT5G48150 29.792 433 239 6 16 442 117 490 4.54e-57 196
MS.gene039871.t1 AT5G48150 29.792 433 239 6 16 442 117 490 4.54e-57 196
MS.gene039871.t1 AT5G48150 29.792 433 239 6 16 442 117 490 4.54e-57 196
MS.gene039871.t1 AT1G66350 29.371 429 232 10 21 443 144 507 5.64e-57 196
MS.gene039871.t1 AT3G03450 28.471 425 230 11 31 443 184 546 5.65e-54 189
MS.gene039871.t1 AT2G04890 30.024 413 235 7 31 442 54 413 5.77e-53 183
MS.gene039871.t1 AT1G50600 29.426 418 238 6 31 442 160 526 1.65e-52 184
MS.gene039871.t1 AT1G50600 29.426 418 238 6 31 442 235 601 6.20e-52 184
MS.gene039871.t1 AT1G50600 29.426 418 238 6 31 442 231 597 6.53e-52 184
MS.gene039871.t1 AT5G17490 28.162 419 233 10 31 443 161 517 1.74e-51 182
MS.gene039871.t1 AT1G14920 28.571 427 222 12 31 443 173 530 1.04e-49 177
MS.gene039871.t1 AT1G21450 28.505 428 242 9 25 442 220 593 1.30e-47 172
MS.gene039871.t1 AT4G17230 27.751 418 245 6 31 442 159 525 4.55e-47 170
MS.gene039871.t1 AT4G17230 27.751 418 245 6 31 442 159 525 4.55e-47 170
MS.gene039871.t1 AT3G54220 28.019 414 239 6 33 444 296 652 7.39e-47 171
MS.gene039871.t1 AT5G41920 28.125 416 236 8 31 442 44 400 5.40e-43 156
MS.gene039871.t1 AT2G29060 29.040 427 230 13 31 441 285 654 1.04e-40 154
MS.gene039871.t1 AT2G29060 29.040 427 230 13 31 441 322 691 1.65e-40 154
MS.gene039871.t1 AT1G07530 27.251 422 242 10 31 441 397 764 8.95e-40 152
MS.gene039871.t1 AT1G63100 25.000 428 252 8 31 441 253 628 3.01e-39 150
MS.gene039871.t1 AT1G63100 25.000 428 252 8 31 441 278 653 3.79e-39 150
MS.gene039871.t1 AT5G59450 28.369 423 240 11 31 442 228 598 1.16e-38 148
MS.gene039871.t1 AT3G46600 26.969 419 247 9 31 442 5 371 1.51e-34 132
MS.gene039871.t1 AT3G46600 26.897 435 255 10 19 442 165 547 1.05e-33 133
MS.gene039871.t1 AT1G55580 24.890 454 246 8 31 442 45 445 1.46e-33 131
MS.gene039871.t1 AT3G46600 26.897 435 255 10 19 442 197 579 2.17e-33 132
MS.gene039871.t1 AT2G37650 25.776 419 251 7 31 442 336 701 1.10e-32 131
MS.gene039871.t1 AT1G07520 24.706 425 249 8 34 441 158 528 1.56e-32 129
MS.gene039871.t1 AT1G07520 24.706 425 249 8 34 441 158 528 1.56e-32 129
MS.gene039871.t1 AT2G37650 25.776 419 251 7 31 442 348 713 1.57e-32 131
MS.gene039871.t1 AT1G07520 24.706 425 249 8 34 441 323 693 3.56e-32 130
MS.gene039871.t1 AT1G07520 24.706 425 249 8 34 441 322 692 3.90e-32 129
MS.gene039871.t1 AT5G66770 26.651 424 239 10 31 442 221 584 1.89e-30 124
MS.gene039871.t1 AT3G50650 25.432 405 227 8 53 442 198 542 2.08e-28 118
MS.gene039871.t1 AT5G52510 24.018 433 247 10 31 442 269 640 4.62e-28 117
MS.gene039871.t1 AT2G29065 23.832 428 256 9 31 441 253 627 1.90e-26 112
MS.gene039871.t1 AT2G01570 35.570 149 91 2 297 443 437 582 2.36e-26 112
MS.gene039871.t1 AT2G01570 28.774 212 136 6 31 235 225 428 7.83e-20 92.4
MS.gene039871.t1 AT4G37650 22.654 437 259 13 31 442 147 529 2.64e-24 105
MS.gene039871.t1 AT3G49950 21.860 430 264 13 31 441 31 407 6.51e-21 94.7

Find 69 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAAGTTTGCTAATTAT+TGG 0.118308 3.1:+12680521 None:intergenic
GACAATCGACGCAGGGATTT+TGG 0.177754 3.1:-12680564 MS.gene039871:CDS
CTGTATCGGCCTGGAAATTT+AGG 0.184893 3.1:-12679812 MS.gene039871:CDS
TCATGAAAAGAAAGAGTTAT+TGG 0.242947 3.1:-12680606 MS.gene039871:CDS
TCTGAATGGATGTAATTTAA+TGG 0.250687 3.1:-12680174 MS.gene039871:CDS
CAAAGAATGGTCACTTATTT+CGG 0.269771 3.1:-12680929 MS.gene039871:CDS
ATGGATTCAAAGACTTAAAA+TGG 0.281483 3.1:-12679973 MS.gene039871:CDS
CTGCCCTTTCTGAAAATTAC+AGG 0.283516 3.1:-12680632 MS.gene039871:CDS
AAACTCGAGAGCATGCTTCT+TGG 0.323417 3.1:-12680065 MS.gene039871:CDS
TTAAGAAAGATCCCCATCTT+AGG 0.353686 3.1:+12680251 None:intergenic
ATGATTGTTTACTTGTTTGT+TGG 0.377997 3.1:-12679854 MS.gene039871:CDS
TTTAGGTGCCTTACCTAAGA+TGG 0.389355 3.1:-12680264 MS.gene039871:CDS
AAGAGGTGATAATGCTGAAT+CGG 0.390322 3.1:+12680289 None:intergenic
CCTTGCCACTGATGATGAAA+TGG 0.410158 3.1:-12680423 MS.gene039871:CDS
AATTCCCTCAGCCAGTGATA+TGG 0.418979 3.1:+12681091 None:intergenic
TTCAGAAAGGGCAGACCTCC+TGG 0.420326 3.1:+12680641 None:intergenic
CACTCAATAAGAGGGATCAT+TGG 0.426274 3.1:+12681043 None:intergenic
GAATCATCACCTAAATTTCC+AGG 0.433497 3.1:+12679803 None:intergenic
TAATTGCTTGATTTGTGATC+AGG 0.434236 3.1:+12680762 None:intergenic
ATTCAAAGACTTAAAATGGC+TGG 0.439982 3.1:-12679969 MS.gene039871:CDS
ATTATTGGATTGAACTGTAA+AGG 0.444269 3.1:+12680536 None:intergenic
TCAGTAATCACTAAAAGTTT+CGG 0.445565 3.1:+12680209 None:intergenic
ACAGCATCTCCTGCCTTGAC+AGG 0.452610 3.1:+12680479 None:intergenic
GATGAAATGGTCTCCTCATC+AGG 0.470481 3.1:-12680410 MS.gene039871:CDS
ACTTATTTCGGTGAAGCACT+TGG 0.479227 3.1:-12680917 MS.gene039871:CDS
TGTGCAAAATGTGTTGCATC+TGG 0.490537 3.1:-12681022 MS.gene039871:CDS
TTAGGTGCCTTACCTAAGAT+GGG 0.491753 3.1:-12680263 MS.gene039871:CDS
CCAATCGATGGAATGTGAAA+AGG 0.492769 3.1:-12680738 MS.gene039871:CDS
AGAGGTGATAATGCTGAATC+GGG 0.492776 3.1:+12680290 None:intergenic
CACTAGGTTCGCCATATCAC+TGG 0.495093 3.1:-12681102 MS.gene039871:CDS
GAACAGGAATCAAATCTGAA+TGG 0.501626 3.1:-12680188 MS.gene039871:CDS
CAACTCAGCTGTTATGCACT+AGG 0.503968 3.1:-12681118 MS.gene039871:CDS
GAAAACTTGCCTGTCAAGGC+AGG 0.505469 3.1:-12680488 MS.gene039871:CDS
ATTTCATCACCTCATGGTAA+TGG 0.506040 3.1:-12680956 MS.gene039871:CDS
TGGTAATGGTGTACAAAGAA+TGG 0.507522 3.1:-12680942 MS.gene039871:CDS
AAAGATCCCCATCTTAGGTA+AGG 0.530737 3.1:+12680256 None:intergenic
AGGTACCTTTGAGTTACAAT+GGG 0.540375 3.1:-12679938 MS.gene039871:CDS
ATAAGATTTATCCATTGCGC+TGG 0.540648 3.1:+12680683 None:intergenic
TTGTGAGGGAGTCGATAGAA+AGG 0.541472 3.1:-12680018 MS.gene039871:CDS
TTTCGAAAACTTGCCTGTCA+AGG 0.544302 3.1:-12680492 MS.gene039871:CDS
AAGGTACCTTTGAGTTACAA+TGG 0.544427 3.1:-12679939 MS.gene039871:CDS
GATAAATGTCGCACCTGATG+AGG 0.551055 3.1:+12680397 None:intergenic
TCAAGCAATTATCCAATCGA+TGG 0.552682 3.1:-12680750 MS.gene039871:CDS
TCTCAGATTTCATCACCTCA+TGG 0.558265 3.1:-12680962 MS.gene039871:CDS
GAGCAGCGCACATGGGTCAG+AGG 0.565209 3.1:-12680364 MS.gene039871:CDS
TACCTTTGAGTTACAATGGG+AGG 0.570596 3.1:-12679935 MS.gene039871:CDS
GGCATGAGAAGCTCGAGCAA+TGG 0.571455 3.1:-12679992 MS.gene039871:CDS
ATTGCGCTGGCTCTGAACAA+TGG 0.572301 3.1:+12680696 None:intergenic
TTTCATTTGACAATCGACGC+AGG 0.574105 3.1:-12680572 MS.gene039871:CDS
AAGAGCATCATTACTTGTGA+GGG 0.576122 3.1:-12680032 MS.gene039871:CDS
ATCCTCCCATTGTAACTCAA+AGG 0.576632 3.1:+12679933 None:intergenic
TATGCAGAGAGCAGCGCACA+TGG 0.577233 3.1:-12680372 MS.gene039871:CDS
TAAAATGGCTGGATTTGTGA+AGG 0.583083 3.1:-12679958 MS.gene039871:CDS
TTGAGAGCTTTGTAAACACC+AGG 0.584040 3.1:+12680872 None:intergenic
TTCATTTGACAATCGACGCA+GGG 0.590990 3.1:-12680571 MS.gene039871:CDS
AAAGAGCATCATTACTTGTG+AGG 0.591839 3.1:-12680033 MS.gene039871:CDS
GTTCGCCATATCACTGGCTG+AGG 0.598645 3.1:-12681096 MS.gene039871:CDS
CACACTTTAAAGAAACGTCC+AGG 0.599132 3.1:-12680659 MS.gene039871:CDS
CCATTTCATCATCAGTGGCA+AGG 0.611869 3.1:+12680423 None:intergenic
ATCGATGGAATGTGAAAAGG+TGG 0.612739 3.1:-12680735 MS.gene039871:CDS
TAGGTGCCTTACCTAAGATG+GGG 0.612919 3.1:-12680262 MS.gene039871:CDS
ATTGTTCAGAGCCAGCGCAA+TGG 0.617587 3.1:-12680694 MS.gene039871:CDS
AAGATAGTTAAACATTTACC+TGG 0.625266 3.1:-12680890 MS.gene039871:CDS
GGAGACCATTTCATCATCAG+TGG 0.644820 3.1:+12680418 None:intergenic
ATGCAGAGAGCAGCGCACAT+GGG 0.647261 3.1:-12680371 MS.gene039871:CDS
TTCGCCATATCACTGGCTGA+GGG 0.658373 3.1:-12681095 MS.gene039871:CDS
AGGGAGTCGATAGAAAGGAA+AGG 0.670114 3.1:-12680013 MS.gene039871:CDS
CTTTGTACACCATTACCATG+AGG 0.671867 3.1:+12680947 None:intergenic
ACTTTAAAGAAACGTCCAGG+AGG 0.715220 3.1:-12680656 MS.gene039871:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGAAAACTTCAAAAAAAA+AGG + chr3.1:12680148-12680167 None:intergenic 15.0%
!!! CATATAAGTATTTTTGAACA+AGG + chr3.1:12680117-12680136 None:intergenic 20.0%
! AAGATAGTTAAACATTTACC+TGG - chr3.1:12680040-12680059 MS.gene039871:CDS 25.0%
! AGCATAAAAAATGCTGATAT+TGG - chr3.1:12679932-12679951 MS.gene039871:CDS 25.0%
! ATGATTGTTTACTTGTTTGT+TGG - chr3.1:12681076-12681095 MS.gene039871:CDS 25.0%
! ATGGATTCAAAGACTTAAAA+TGG - chr3.1:12680957-12680976 MS.gene039871:CDS 25.0%
! ATTATTGGATTGAACTGTAA+AGG + chr3.1:12680397-12680416 None:intergenic 25.0%
! TCAGTAATCACTAAAAGTTT+CGG + chr3.1:12680724-12680743 None:intergenic 25.0%
! TCATGAAAAGAAAGAGTTAT+TGG - chr3.1:12680324-12680343 MS.gene039871:CDS 25.0%
! TCTGAATGGATGTAATTTAA+TGG - chr3.1:12680756-12680775 MS.gene039871:CDS 25.0%
!! AATTCCTGTAATTTTCAGAA+AGG + chr3.1:12680305-12680324 None:intergenic 25.0%
!! ATTCCTGTAATTTTCAGAAA+GGG + chr3.1:12680304-12680323 None:intergenic 25.0%
!!! TCTTCAAGTTTGCTAATTAT+TGG + chr3.1:12680412-12680431 None:intergenic 25.0%
ATTCAAAGACTTAAAATGGC+TGG - chr3.1:12680961-12680980 MS.gene039871:CDS 30.0%
CAAAGAATGGTCACTTATTT+CGG - chr3.1:12680001-12680020 MS.gene039871:CDS 30.0%
! ACTTTTAGTGATTACTGAAC+AGG - chr3.1:12680726-12680745 MS.gene039871:CDS 30.0%
! ATTTTGCACACTCAATAAGA+GGG + chr3.1:12679898-12679917 None:intergenic 30.0%
!! AATCGAGCATTGTACTTTTA+CGG - chr3.1:12680787-12680806 MS.gene039871:CDS 30.0%
!! TAATTGCTTGATTTGTGATC+AGG + chr3.1:12680171-12680190 None:intergenic 30.0%
!!! GCATTATCACCTCTTTTTTT+AGG - chr3.1:12680649-12680668 MS.gene039871:CDS 30.0%
ATAAGATTTATCCATTGCGC+TGG + chr3.1:12680250-12680269 None:intergenic 35.0%
ATTTCATCACCTCATGGTAA+TGG - chr3.1:12679974-12679993 MS.gene039871:CDS 35.0%
GAACAGGAATCAAATCTGAA+TGG - chr3.1:12680742-12680761 MS.gene039871:CDS 35.0%
TAAAATGGCTGGATTTGTGA+AGG - chr3.1:12680972-12680991 MS.gene039871:CDS 35.0%
TCAAGCAATTATCCAATCGA+TGG - chr3.1:12680180-12680199 MS.gene039871:CDS 35.0%
TTAAGAAAGATCCCCATCTT+AGG + chr3.1:12680682-12680701 None:intergenic 35.0%
! AAGAGGTGATAATGCTGAAT+CGG + chr3.1:12680644-12680663 None:intergenic 35.0%
! AAGGTACCTTTGAGTTACAA+TGG - chr3.1:12680991-12681010 MS.gene039871:CDS 35.0%
! AGGTACCTTTGAGTTACAAT+GGG - chr3.1:12680992-12681011 MS.gene039871:CDS 35.0%
! CATTTTGCACACTCAATAAG+AGG + chr3.1:12679899-12679918 None:intergenic 35.0%
! TGAAGACGATGATATTTTCG+AGG + chr3.1:12680086-12680105 None:intergenic 35.0%
!! AAAGAGCATCATTACTTGTG+AGG - chr3.1:12680897-12680916 MS.gene039871:CDS 35.0%
!! AAGAGCATCATTACTTGTGA+GGG - chr3.1:12680898-12680917 MS.gene039871:CDS 35.0%
!! TGGTAATGGTGTACAAAGAA+TGG - chr3.1:12679988-12680007 MS.gene039871:CDS 35.0%
!!! CAGACCACTTTTTTCTGTAT+CGG - chr3.1:12681104-12681123 MS.gene039871:CDS 35.0%
AAAGATCCCCATCTTAGGTA+AGG + chr3.1:12680677-12680696 None:intergenic 40.0%
ATCCTCCCATTGTAACTCAA+AGG + chr3.1:12681000-12681019 None:intergenic 40.0%
ATCGATGGAATGTGAAAAGG+TGG - chr3.1:12680195-12680214 MS.gene039871:CDS 40.0%
CACTCAATAAGAGGGATCAT+TGG + chr3.1:12679890-12679909 None:intergenic 40.0%
CCAATCGATGGAATGTGAAA+AGG - chr3.1:12680192-12680211 MS.gene039871:CDS 40.0%
CTTTGTACACCATTACCATG+AGG + chr3.1:12679986-12680005 None:intergenic 40.0%
TCTCAGATTTCATCACCTCA+TGG - chr3.1:12679968-12679987 MS.gene039871:CDS 40.0%
TGTGCAAAATGTGTTGCATC+TGG - chr3.1:12679908-12679927 MS.gene039871:CDS 40.0%
TTAGGTGCCTTACCTAAGAT+GGG - chr3.1:12680667-12680686 MS.gene039871:CDS 40.0%
TTCATTTGACAATCGACGCA+GGG - chr3.1:12680359-12680378 MS.gene039871:CDS 40.0%
TTTAGGTGCCTTACCTAAGA+TGG - chr3.1:12680666-12680685 MS.gene039871:CDS 40.0%
TTTCATTTGACAATCGACGC+AGG - chr3.1:12680358-12680377 MS.gene039871:CDS 40.0%
TTTCGAAAACTTGCCTGTCA+AGG - chr3.1:12680438-12680457 MS.gene039871:CDS 40.0%
! ACTTATTTCGGTGAAGCACT+TGG - chr3.1:12680013-12680032 MS.gene039871:CDS 40.0%
! ACTTTAAAGAAACGTCCAGG+AGG - chr3.1:12680274-12680293 MS.gene039871:CDS 40.0%
! AGAGGTGATAATGCTGAATC+GGG + chr3.1:12680643-12680662 None:intergenic 40.0%
! CACACTTTAAAGAAACGTCC+AGG - chr3.1:12680271-12680290 MS.gene039871:CDS 40.0%
! CCTTTTCACATTCCATCGAT+TGG + chr3.1:12680195-12680214 None:intergenic 40.0%
! CTGCCCTTTCTGAAAATTAC+AGG - chr3.1:12680298-12680317 MS.gene039871:CDS 40.0%
! GGTAAGGCACCTAAAAAAAG+AGG + chr3.1:12680661-12680680 None:intergenic 40.0%
! TACCTTTGAGTTACAATGGG+AGG - chr3.1:12680995-12681014 MS.gene039871:CDS 40.0%
! TTGAGAGCTTTGTAAACACC+AGG + chr3.1:12680061-12680080 None:intergenic 40.0%
AATTCCCTCAGCCAGTGATA+TGG + chr3.1:12679842-12679861 None:intergenic 45.0%
AGGGAGTCGATAGAAAGGAA+AGG - chr3.1:12680917-12680936 MS.gene039871:CDS 45.0%
CAACTCAGCTGTTATGCACT+AGG - chr3.1:12679812-12679831 MS.gene039871:CDS 45.0%
CAGGCCGATACAGAAAAAAG+TGG + chr3.1:12681111-12681130 None:intergenic 45.0%
CCATTTCATCATCAGTGGCA+AGG + chr3.1:12680510-12680529 None:intergenic 45.0%
GATAAATGTCGCACCTGATG+AGG + chr3.1:12680536-12680555 None:intergenic 45.0%
GATGAAATGGTCTCCTCATC+AGG - chr3.1:12680520-12680539 MS.gene039871:CDS 45.0%
GGAGACCATTTCATCATCAG+TGG + chr3.1:12680515-12680534 None:intergenic 45.0%
TAGGTGCCTTACCTAAGATG+GGG - chr3.1:12680668-12680687 MS.gene039871:CDS 45.0%
TTGTGAGGGAGTCGATAGAA+AGG - chr3.1:12680912-12680931 MS.gene039871:CDS 45.0%
! AAACTCGAGAGCATGCTTCT+TGG - chr3.1:12680865-12680884 MS.gene039871:CDS 45.0%
! CCTTGCCACTGATGATGAAA+TGG - chr3.1:12680507-12680526 MS.gene039871:CDS 45.0%
! CTGTATCGGCCTGGAAATTT+AGG - chr3.1:12681118-12681137 MS.gene039871:CDS 45.0%
!!! CACTTTTTTCTGTATCGGCC+TGG - chr3.1:12681109-12681128 MS.gene039871:CDS 45.0%
!!! CGGTTCACTTTTTGACTGCT+TGG - chr3.1:12680807-12680826 MS.gene039871:CDS 45.0%
ATTGTTCAGAGCCAGCGCAA+TGG - chr3.1:12680236-12680255 MS.gene039871:CDS 50.0%
CACTAGGTTCGCCATATCAC+TGG - chr3.1:12679828-12679847 MS.gene039871:CDS 50.0%
GAAAACTTGCCTGTCAAGGC+AGG - chr3.1:12680442-12680461 MS.gene039871:CDS 50.0%
! GACAATCGACGCAGGGATTT+TGG - chr3.1:12680366-12680385 MS.gene039871:CDS 50.0%
! GTCAGAGGATTTTCGCAGAG+TGG - chr3.1:12680581-12680600 MS.gene039871:CDS 50.0%
! TTCGCCATATCACTGGCTGA+GGG - chr3.1:12679835-12679854 MS.gene039871:CDS 50.0%
!! ATTGCGCTGGCTCTGAACAA+TGG + chr3.1:12680237-12680256 None:intergenic 50.0%
ACAGCATCTCCTGCCTTGAC+AGG + chr3.1:12680454-12680473 None:intergenic 55.0%
ATGCAGAGAGCAGCGCACAT+GGG - chr3.1:12680559-12680578 MS.gene039871:CDS 55.0%
GGCATGAGAAGCTCGAGCAA+TGG - chr3.1:12680938-12680957 MS.gene039871:CDS 55.0%
TATGCAGAGAGCAGCGCACA+TGG - chr3.1:12680558-12680577 MS.gene039871:CDS 55.0%
TTCAGAAAGGGCAGACCTCC+TGG + chr3.1:12680292-12680311 None:intergenic 55.0%
! GTTCGCCATATCACTGGCTG+AGG - chr3.1:12679834-12679853 MS.gene039871:CDS 55.0%
GAGCAGCGCACATGGGTCAG+AGG - chr3.1:12680566-12680585 MS.gene039871:CDS 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 12679809 12681143 12679809 ID=MS.gene039871
chr3.1 mRNA 12679809 12681143 12679809 ID=MS.gene039871.t1;Parent=MS.gene039871
chr3.1 exon 12679809 12681143 12679809 ID=MS.gene039871.t1.exon1;Parent=MS.gene039871.t1
chr3.1 CDS 12679809 12681143 12679809 ID=cds.MS.gene039871.t1;Parent=MS.gene039871.t1
Gene Sequence

>MS.gene039871

ATGCAACTCAGCTGTTATGCACTAGGTTCGCCATATCACTGGCTGAGGGAATTGAGATACGACTCTCAGAGCTCAAATCCAATGATCCCTCTTATTGAGTGTGCAAAATGTGTTGCATCTGGAAGCATAAAAAATGCTGATATTGGACTTGAGTATATTTCTCAGATTTCATCACCTCATGGTAATGGTGTACAAAGAATGGTCACTTATTTCGGTGAAGCACTTGGATACAAGATAGTTAAACATTTACCTGGTGTTTACAAAGCTCTCAATTCCTCGAAAATATCATCGTCTTCAGACGACATCCTTGTTCAAAAATACTTATATGATCTGTGTCCTTTTTTTTTGAAGTTTTCATACCTGATCACAAATCAAGCAATTATCCAATCGATGGAATGTGAAAAGGTGGTTCATATTATCGATCTCCATTGTTCAGAGCCAGCGCAATGGATAAATCTTATACACACTTTAAAGAAACGTCCAGGAGGTCTGCCCTTTCTGAAAATTACAGGAATTCATGAAAAGAAAGAGTTATTGGAGCAAATGAGCTTTCATTTGACAATCGACGCAGGGATTTTGGATTTTCCTTTACAGTTCAATCCAATAATTAGCAAACTTGAAGATGTCGATTTCGAAAACTTGCCTGTCAAGGCAGGAGATGCTGTCGCAATTTCTTCTGTTCTTCAGCTGCATTCTCTCCTTGCCACTGATGATGAAATGGTCTCCTCATCAGGTGCGACATTTATCAATATGCAGAGAGCAGCGCACATGGGTCAGAGGATTTTCGCAGAGTGGCTAGAGAGAGACATGATCAATGCATATATCTTGAGTCCCGATTCAGCATTATCACCTCTTTTTTTAGGTGCCTTACCTAAGATGGGGATCTTTCTTAACGCTATGCGAAAACTACAACCGAAACTTTTAGTGATTACTGAACAGGAATCAAATCTGAATGGATGTAATTTAATGGAGAGAATCAATCGAGCATTGTACTTTTACGGTTCACTTTTTGACTGCTTGGAATCTACTGTTACGAGAACATCAGTCGAGAGACAAAAACTCGAGAGCATGCTTCTTGGAGAGCAAATAAAGAGCATCATTACTTGTGAGGGAGTCGATAGAAAGGAAAGGCATGAGAAGCTCGAGCAATGGATTCAAAGACTTAAAATGGCTGGATTTGTGAAGGTACCTTTGAGTTACAATGGGAGGATAGAAGCGACAAATCTATTGCAGCGATATAGTCATAAATACAAGTTTAAAGAAGAAAATGATTGTTTACTTGTTTGTTGGAGTGACAGACCACTTTTTTCTGTATCGGCCTGGAAATTTAGGTGA
Protein sequence

>MS.gene039871.t1

MQLSCYALGSPYHWLRELRYDSQSSNPMIPLIECAKCVASGSIKNADIGLEYISQISSPHGNGVQRMVTYFGEALGYKIVKHLPGVYKALNSSKISSSSDDILVQKYLYDLCPFFLKFSYLITNQAIIQSMECEKVVHIIDLHCSEPAQWINLIHTLKKRPGGLPFLKITGIHEKKELLEQMSFHLTIDAGILDFPLQFNPIISKLEDVDFENLPVKAGDAVAISSVLQLHSLLATDDEMVSSSGATFINMQRAAHMGQRIFAEWLERDMINAYILSPDSALSPLFLGALPKMGIFLNAMRKLQPKLLVITEQESNLNGCNLMERINRALYFYGSLFDCLESTVTRTSVERQKLESMLLGEQIKSIITCEGVDRKERHEKLEQWIQRLKMAGFVKVPLSYNGRIEATNLLQRYSHKYKFKEENDCLLVCWSDRPLFSVSAWKFR