AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene039878

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039878.t1 MTR_3g022830 97.011 435 13 0 9 443 4 438 0.0 879
MS.gene039878.t1 MTR_5g009080 54.566 449 192 5 7 443 32 480 7.33e-169 483
MS.gene039878.t1 MTR_4g076140 49.888 447 214 4 7 443 25 471 1.12e-158 457
MS.gene039878.t1 MTR_3g022580 73.298 191 20 2 253 443 26 185 9.65e-94 281
MS.gene039878.t1 MTR_5g097480 30.788 419 230 6 31 441 178 544 1.26e-61 209
MS.gene039878.t1 MTR_1g029420 29.976 417 236 4 31 441 226 592 1.66e-59 204
MS.gene039878.t1 MTR_3g022005 92.708 96 7 0 348 443 32 127 3.17e-59 190
MS.gene039878.t1 MTR_7g027190 29.535 430 227 6 31 441 301 673 1.21e-58 204
MS.gene039878.t1 MTR_2g082090 30.935 417 230 7 31 440 213 578 6.16e-56 195
MS.gene039878.t1 MTR_5g094450 27.685 419 247 6 31 441 162 532 2.18e-55 192
MS.gene039878.t1 MTR_3g027430 53.211 218 41 7 13 230 124 280 3.14e-55 186
MS.gene039878.t1 MTR_3g027430 57.955 88 3 1 356 443 279 332 6.08e-23 99.4
MS.gene039878.t1 MTR_3g089055 28.302 424 248 4 24 441 192 565 5.56e-55 192
MS.gene039878.t1 MTR_3g089055 28.302 424 248 4 24 441 197 570 9.16e-55 191
MS.gene039878.t1 MTR_3g056110 28.058 417 244 6 31 441 176 542 2.96e-54 189
MS.gene039878.t1 MTR_7g074650 29.398 415 224 8 33 441 441 792 4.44e-53 190
MS.gene039878.t1 MTR_4g133660 27.553 421 240 8 31 440 176 542 4.82e-48 172
MS.gene039878.t1 MTR_4g102790 27.078 421 244 8 31 440 293 661 4.08e-46 169
MS.gene039878.t1 MTR_3g021320 57.333 150 36 3 130 276 1 125 5.62e-45 153
MS.gene039878.t1 MTR_8g442410 27.934 426 236 9 31 441 156 525 6.70e-45 164
MS.gene039878.t1 MTR_2g026250 26.256 438 257 8 19 441 210 596 6.89e-45 165
MS.gene039878.t1 MTR_2g097410 26.555 418 250 6 31 440 372 740 8.86e-45 166
MS.gene039878.t1 MTR_2g097467 28.469 418 237 8 31 440 290 653 1.21e-44 165
MS.gene039878.t1 MTR_4g064160 27.990 418 242 7 31 440 317 683 1.68e-44 165
MS.gene039878.t1 MTR_4g064200 27.512 418 242 7 31 440 285 649 2.23e-43 161
MS.gene039878.t1 MTR_4g064150 27.423 423 242 9 31 440 362 732 3.21e-42 159
MS.gene039878.t1 MTR_7g062120 27.273 418 247 6 31 441 373 740 4.29e-42 159
MS.gene039878.t1 MTR_2g097350 26.966 445 260 10 6 440 250 639 5.89e-42 157
MS.gene039878.t1 MTR_2g097473 27.818 417 241 7 31 440 290 653 1.49e-41 156
MS.gene039878.t1 MTR_2g097310 26.969 419 243 8 31 440 273 637 1.92e-41 156
MS.gene039878.t1 MTR_2g097390 25.542 415 254 7 31 440 276 640 3.74e-41 155
MS.gene039878.t1 MTR_4g104020 26.241 423 248 7 31 441 150 520 6.53e-41 153
MS.gene039878.t1 MTR_4g064120 26.316 418 245 9 31 436 255 621 2.81e-40 152
MS.gene039878.t1 MTR_3g025350 42.723 213 38 5 181 392 1 130 7.57e-40 139
MS.gene039878.t1 MTR_4g064180 26.379 417 246 9 31 436 255 621 1.10e-39 151
MS.gene039878.t1 MTR_2g097463 27.338 417 243 7 31 440 291 654 1.03e-38 148
MS.gene039878.t1 MTR_1g069725 26.291 426 247 10 23 443 102 465 5.63e-37 141
MS.gene039878.t1 MTR_4g097080 23.820 445 271 9 10 441 114 503 2.12e-36 140
MS.gene039878.t1 MTR_4g077760 27.103 428 240 10 26 441 188 555 4.18e-36 140
MS.gene039878.t1 MTR_2g034250 27.739 429 240 8 31 442 211 586 5.61e-36 140
MS.gene039878.t1 MTR_2g034280 27.635 427 240 9 31 442 204 576 1.14e-35 139
MS.gene039878.t1 MTR_4g076020 28.398 412 223 12 33 441 87 429 2.16e-35 136
MS.gene039878.t1 MTR_2g097380 24.939 409 227 7 35 440 229 560 2.74e-34 135
MS.gene039878.t1 MTR_2g034260 27.209 430 240 9 31 442 211 585 6.13e-34 134
MS.gene039878.t1 MTR_2g089100 25.943 424 266 10 31 440 53 442 3.83e-33 130
MS.gene039878.t1 MTR_5g015490 23.349 424 264 8 31 441 115 490 4.36e-32 127
MS.gene039878.t1 MTR_1g106590 50.000 110 55 0 32 141 132 241 4.10e-30 119
MS.gene039878.t1 MTR_1g106590 48.936 94 45 2 256 346 247 340 1.79e-14 74.7
MS.gene039878.t1 MTR_5g058860 24.190 401 236 7 56 440 148 496 5.62e-29 119
MS.gene039878.t1 MTR_1g096030 24.508 457 256 15 15 441 62 459 1.09e-28 117
MS.gene039878.t1 MTR_3g072710 24.215 446 256 13 21 440 110 499 3.29e-28 117
MS.gene039878.t1 MTR_3g065980 39.752 161 83 3 296 442 381 541 3.30e-28 117
MS.gene039878.t1 MTR_3g065980 31.100 209 130 4 31 234 173 372 5.94e-28 116
MS.gene039878.t1 MTR_4g095500 24.537 432 280 10 31 440 60 467 2.68e-26 111
MS.gene039878.t1 MTR_7g057230 25.714 420 244 12 31 440 295 656 2.79e-24 106
MS.gene039878.t1 MTR_5g015950 22.811 434 287 10 31 440 36 445 3.69e-24 104
MS.gene039878.t1 MTR_3g053270 22.811 434 287 10 31 440 36 445 3.69e-24 104
MS.gene039878.t1 MTR_7g109580 23.858 394 238 9 57 442 216 555 9.76e-23 101
MS.gene039878.t1 MTR_3g025340 73.770 61 16 0 88 148 9 69 1.77e-22 90.9
MS.gene039878.t1 MTR_1g086970 24.372 398 228 12 61 442 139 479 1.19e-19 91.7
MS.gene039878.t1 MTR_6g047750 24.471 425 249 16 31 441 296 662 6.18e-19 89.7
MS.gene039878.t1 MTR_3g021090 42.636 129 59 4 144 269 297 413 1.41e-18 87.8
MS.gene039878.t1 MTR_2g099110 22.529 435 255 11 31 441 75 451 2.27e-18 87.4
MS.gene039878.t1 MTR_8g093070 23.038 395 229 12 57 440 165 495 2.78e-17 84.3
MS.gene039878.t1 MTR_4g026485 22.115 416 258 11 31 441 270 624 3.55e-17 84.3
MS.gene039878.t1 MTR_0092s0100 31.915 141 94 1 31 171 376 514 2.95e-11 65.9
MS.gene039878.t1 MTR_0092s0100 31.915 141 94 1 31 171 373 511 3.04e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene039878.t1 AT1G50420 49.107 448 217 4 7 443 34 481 4.24e-150 436
MS.gene039878.t1 AT1G66350 31.075 428 225 10 21 442 144 507 5.05e-63 212
MS.gene039878.t1 AT5G48150 30.324 432 237 5 16 441 117 490 3.55e-62 209
MS.gene039878.t1 AT5G48150 30.324 432 237 5 16 441 117 490 3.55e-62 209
MS.gene039878.t1 AT5G48150 30.324 432 237 5 16 441 117 490 3.55e-62 209
MS.gene039878.t1 AT5G48150 30.324 432 237 5 16 441 117 490 3.55e-62 209
MS.gene039878.t1 AT3G03450 29.009 424 228 9 31 442 184 546 1.01e-58 201
MS.gene039878.t1 AT1G50600 29.736 417 237 5 31 441 160 526 7.53e-58 199
MS.gene039878.t1 AT2G04890 30.583 412 233 6 31 441 54 413 2.00e-57 195
MS.gene039878.t1 AT1G50600 29.736 417 237 5 31 441 235 601 3.11e-57 199
MS.gene039878.t1 AT1G50600 29.736 417 237 5 31 441 231 597 3.46e-57 198
MS.gene039878.t1 AT2G01570 28.504 421 229 8 31 442 225 582 1.23e-54 191
MS.gene039878.t1 AT1G14920 29.812 426 217 11 31 442 173 530 2.16e-54 189
MS.gene039878.t1 AT4G17230 29.017 417 240 6 31 441 159 525 2.03e-52 184
MS.gene039878.t1 AT4G17230 29.017 417 240 6 31 441 159 525 2.03e-52 184
MS.gene039878.t1 AT3G54220 28.744 414 235 7 33 443 296 652 1.47e-51 184
MS.gene039878.t1 AT1G21450 29.009 424 244 7 25 441 220 593 1.21e-50 181
MS.gene039878.t1 AT1G63100 25.059 427 252 5 31 440 253 628 8.94e-45 165
MS.gene039878.t1 AT1G63100 25.059 427 252 5 31 440 278 653 1.11e-44 165
MS.gene039878.t1 AT2G29060 28.741 421 238 10 31 440 285 654 1.45e-43 162
MS.gene039878.t1 AT2G29060 28.741 421 238 10 31 440 322 691 2.32e-43 162
MS.gene039878.t1 AT1G07530 27.316 421 242 9 31 440 397 764 7.77e-43 161
MS.gene039878.t1 AT5G59450 28.504 421 241 8 31 441 228 598 6.19e-42 157
MS.gene039878.t1 AT3G46600 27.990 418 243 8 31 441 5 371 2.68e-39 145
MS.gene039878.t1 AT5G41920 27.644 416 237 9 31 441 44 400 7.53e-39 145
MS.gene039878.t1 AT3G46600 27.880 434 251 9 19 441 165 547 1.99e-38 146
MS.gene039878.t1 AT3G46600 27.880 434 251 9 19 441 197 579 5.09e-38 145
MS.gene039878.t1 AT1G55580 25.166 453 245 7 31 441 45 445 5.06e-36 138
MS.gene039878.t1 AT1G07520 25.175 429 247 9 31 440 155 528 8.42e-36 139
MS.gene039878.t1 AT1G07520 25.175 429 247 9 31 440 155 528 8.42e-36 139
MS.gene039878.t1 AT2G37650 26.077 418 250 7 31 441 348 713 2.16e-35 139
MS.gene039878.t1 AT2G37650 26.077 418 250 7 31 441 336 701 2.25e-35 139
MS.gene039878.t1 AT1G07520 25.175 429 247 9 31 440 319 692 2.51e-35 139
MS.gene039878.t1 AT1G07520 25.175 429 247 9 31 440 320 693 2.62e-35 139
MS.gene039878.t1 AT5G66770 27.187 423 237 9 31 441 221 584 4.55e-35 137
MS.gene039878.t1 AT2G29065 24.590 427 253 8 31 440 253 627 3.19e-32 129
MS.gene039878.t1 AT3G50650 25.743 404 226 7 53 441 198 542 4.58e-32 128
MS.gene039878.t1 AT4G37650 23.112 437 256 12 31 441 147 529 9.39e-32 127
MS.gene039878.t1 AT5G52510 23.843 432 248 9 31 441 269 640 9.36e-30 122
MS.gene039878.t1 AT5G17490 30.769 208 133 5 31 234 161 361 4.34e-29 119
MS.gene039878.t1 AT5G17490 38.000 150 90 2 295 442 369 517 7.25e-26 110
MS.gene039878.t1 AT3G49950 23.077 429 259 13 31 440 31 407 2.62e-24 104
MS.gene039878.t1 AT4G08250 22.603 438 271 12 17 440 93 476 7.01e-23 101

Find 69 sgRNAs with CRISPR-Local

Find 86 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAAGTTTGCTAATTAT+TGG 0.118308 3.1:+12816526 None:intergenic
CTGTATCGGCCTGGAAATTT+AGG 0.184893 3.1:-12815817 MS.gene039878:CDS
GACAACCGAAGCAGGGATTT+TGG 0.226524 3.1:-12816569 MS.gene039878:CDS
TCTGAATGGATGTAATTTAA+TGG 0.250687 3.1:-12816179 MS.gene039878:CDS
ATGGATTCAAAGACTTAAAA+TGG 0.281483 3.1:-12815978 MS.gene039878:CDS
AAACTCGAGAGCATGCTTCT+TGG 0.323417 3.1:-12816070 MS.gene039878:CDS
TTAAGAAAGATCCCCATCTT+AGG 0.362039 3.1:+12816256 None:intergenic
TAATTGCTTGATTTGTGATC+AGG 0.367971 3.1:+12816767 None:intergenic
CCGCCCCATCTGAAAATTAC+AGG 0.369403 3.1:-12816637 MS.gene039878:CDS
TTTAGGTGCTTCACCTAAGA+TGG 0.374066 3.1:-12816269 MS.gene039878:CDS
ATGATTGTTTACTTGTTTGT+TGG 0.377997 3.1:-12815859 MS.gene039878:CDS
AAGAGGTGATAATGCTGAAT+CGG 0.390322 3.1:+12816294 None:intergenic
GAATCATCACCTAAATTTCC+AGG 0.414889 3.1:+12815808 None:intergenic
AATTCCCTCAGCCAGTGATA+TGG 0.418979 3.1:+12817093 None:intergenic
CGAATCGATGGAACGTGAAA+AGG 0.422571 3.1:-12816743 MS.gene039878:CDS
TCTTGCCACTGATGATGAAA+TGG 0.424264 3.1:-12816428 MS.gene039878:CDS
CACTCAATAAGAGGGATCAT+TGG 0.426274 3.1:+12817045 None:intergenic
TTCAGATGGGGCGGACCTCC+CGG 0.437773 3.1:+12816646 None:intergenic
ATCAGATTTATCCATTGTGC+TGG 0.438210 3.1:+12816688 None:intergenic
ATTCAAAGACTTAAAATGGC+TGG 0.439982 3.1:-12815974 MS.gene039878:CDS
TCAGTAATCACTAAAAGTTT+CGG 0.445565 3.1:+12816214 None:intergenic
TTTCATTTGACAACCGAAGC+AGG 0.447617 3.1:-12816577 MS.gene039878:CDS
ACAAACTTTAAAGAAACGTC+CGG 0.481008 3.1:-12816665 MS.gene039878:CDS
AAAATCCAAAATCCCTGCTT+CGG 0.483217 3.1:+12816564 None:intergenic
TCATGAAAAGAAAGAAGTAT+TGG 0.489286 3.1:-12816611 MS.gene039878:CDS
TGTGCAAAATGTGTTGCATC+TGG 0.490537 3.1:-12817024 MS.gene039878:CDS
AGAGGTGATAATGCTGAATC+GGG 0.492776 3.1:+12816295 None:intergenic
TTAGGTGCTTCACCTAAGAT+GGG 0.494167 3.1:-12816268 MS.gene039878:CDS
CACTAGGTTCGCCATATCAC+TGG 0.495093 3.1:-12817104 MS.gene039878:CDS
GAAAACTTGCCTGTCAAGAC+AGG 0.495316 3.1:-12816493 MS.gene039878:CDS
TGGTAATGGTGTACAAAGAA+TGG 0.500702 3.1:-12816944 MS.gene039878:CDS
GAACAGGAATCAAATCTGAA+TGG 0.501626 3.1:-12816193 MS.gene039878:CDS
CAACTCAGCTGTTATGCACT+AGG 0.503968 3.1:-12817120 MS.gene039878:CDS
ATTTCATCACCTCATGGTAA+TGG 0.506040 3.1:-12816958 MS.gene039878:CDS
ACAGCGTCTCCTGTCTTGAC+AGG 0.513933 3.1:+12816484 None:intergenic
ATTTATCCATTGTGCTGGCT+CGG 0.514141 3.1:+12816693 None:intergenic
ATTATTGGATTGAACTGTAA+CGG 0.517237 3.1:+12816541 None:intergenic
ACTTATTTCAGTGAAGCACT+TGG 0.520928 3.1:-12816919 MS.gene039878:CDS
TCAAGCAATTATCGAATCGA+TGG 0.531832 3.1:-12816755 MS.gene039878:CDS
GATGAAATGGTCTCCTCAGC+AGG 0.533946 3.1:-12816415 MS.gene039878:CDS
AGGTACCTTTGAGTTACAAT+GGG 0.540375 3.1:-12815943 MS.gene039878:CDS
TTGTGAGGGAGTCGATAGAA+AGG 0.541472 3.1:-12816023 MS.gene039878:CDS
AAGGTACCTTTGAGTTACAA+TGG 0.544427 3.1:-12815944 MS.gene039878:CDS
ATTGTGCTGGCTCGGAACAA+TGG 0.556626 3.1:+12816701 None:intergenic
TCTCAGATTTCATCACCTCA+TGG 0.558265 3.1:-12816964 MS.gene039878:CDS
TTCATTTGACAACCGAAGCA+GGG 0.560755 3.1:-12816576 MS.gene039878:CDS
TACCTTTGAGTTACAATGGG+AGG 0.570596 3.1:-12815940 MS.gene039878:CDS
TATGCATAGAGCAGCGCACA+TGG 0.570662 3.1:-12816377 MS.gene039878:CDS
GGCATGAGAAGCTCGAGCAA+TGG 0.571455 3.1:-12815997 MS.gene039878:CDS
AAGAACATCATTACTTGTGA+GGG 0.575874 3.1:-12816037 MS.gene039878:CDS
ATCCTCCCATTGTAACTCAA+AGG 0.576632 3.1:+12815938 None:intergenic
AAAGAACATCATTACTTGTG+AGG 0.578365 3.1:-12816038 MS.gene039878:CDS
TAAAATGGCTGGATTTGTGA+AGG 0.583083 3.1:-12815963 MS.gene039878:CDS
GATAGATGTCGCACCTGCTG+AGG 0.593900 3.1:+12816402 None:intergenic
ATCGATGGAACGTGAAAAGG+TGG 0.597890 3.1:-12816740 MS.gene039878:CDS
GTTCGCCATATCACTGGCTG+AGG 0.598645 3.1:-12817098 MS.gene039878:CDS
TTGAGAGCTTTATATACACC+AGG 0.605500 3.1:+12816874 None:intergenic
TAGGTGCTTCACCTAAGATG+GGG 0.607732 3.1:-12816267 MS.gene039878:CDS
GAGCAGCGCACATGGGTCAG+AGG 0.620315 3.1:-12816369 MS.gene039878:CDS
AAGATAGTTAAACATTTACC+TGG 0.625266 3.1:-12816892 MS.gene039878:CDS
CAAACTTTAAAGAAACGTCC+GGG 0.635686 3.1:-12816664 MS.gene039878:CDS
GGAGACCATTTCATCATCAG+TGG 0.644820 3.1:+12816423 None:intergenic
ATGCATAGAGCAGCGCACAT+GGG 0.647261 3.1:-12816376 MS.gene039878:CDS
GTCAGAGGACTTTCGCAGAG+TGG 0.652841 3.1:-12816354 MS.gene039878:CDS
TTCGCCATATCACTGGCTGA+GGG 0.658373 3.1:-12817097 MS.gene039878:CDS
AGGGAGTCGATAGAAAGGAA+AGG 0.670114 3.1:-12816018 MS.gene039878:CDS
CTTTGTACACCATTACCATG+AGG 0.671867 3.1:+12816949 None:intergenic
ATTGTTCCGAGCCAGCACAA+TGG 0.687748 3.1:-12816699 MS.gene039878:CDS
ACTTTAAAGAAACGTCCGGG+AGG 0.713179 3.1:-12816661 MS.gene039878:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! AAGATAGTTAAACATTTACC+TGG - chr3.1:12816045-12816064 MS.gene039878:CDS 25.0%
! AGCATAAAAAATGCTGATAT+TGG - chr3.1:12815937-12815956 MS.gene039878:CDS 25.0%
! AGGTATGAAAACTTCAAAAA+AGG + chr3.1:12816153-12816172 None:intergenic 25.0%
! ATGATTGTTTACTTGTTTGT+TGG - chr3.1:12817078-12817097 MS.gene039878:CDS 25.0%
! ATGGATTCAAAGACTTAAAA+TGG - chr3.1:12816959-12816978 MS.gene039878:CDS 25.0%
! ATTATTGGATTGAACTGTAA+CGG + chr3.1:12816399-12816418 None:intergenic 25.0%
! TCAGTAATCACTAAAAGTTT+CGG + chr3.1:12816726-12816745 None:intergenic 25.0%
! TCTGAATGGATGTAATTTAA+TGG - chr3.1:12816758-12816777 MS.gene039878:CDS 25.0%
!! AATTCCTGTAATTTTCAGAT+GGG + chr3.1:12816307-12816326 None:intergenic 25.0%
!! TCATGAAAAGAAAGAAGTAT+TGG - chr3.1:12816326-12816345 MS.gene039878:CDS 25.0%
!!! CATAGAAGTATTTTTGAACA+AGG + chr3.1:12816122-12816141 None:intergenic 25.0%
!!! TCTTCAAGTTTGCTAATTAT+TGG + chr3.1:12816414-12816433 None:intergenic 25.0%
AAAGAACATCATTACTTGTG+AGG - chr3.1:12816899-12816918 MS.gene039878:CDS 30.0%
AAGAACATCATTACTTGTGA+GGG - chr3.1:12816900-12816919 MS.gene039878:CDS 30.0%
ATTCAAAGACTTAAAATGGC+TGG - chr3.1:12816963-12816982 MS.gene039878:CDS 30.0%
! ACAAACTTTAAAGAAACGTC+CGG - chr3.1:12816272-12816291 MS.gene039878:CDS 30.0%
! ACTTTTAGTGATTACTGAAC+AGG - chr3.1:12816728-12816747 MS.gene039878:CDS 30.0%
! ATTCCTGTAATTTTCAGATG+GGG + chr3.1:12816306-12816325 None:intergenic 30.0%
! ATTTTGCACACTCAATAAGA+GGG + chr3.1:12815903-12815922 None:intergenic 30.0%
! GAATTCCTGTAATTTTCAGA+TGG + chr3.1:12816308-12816327 None:intergenic 30.0%
!! TAATTGCTTGATTTGTGATC+AGG + chr3.1:12816173-12816192 None:intergenic 30.0%
!!! GCATTATCACCTCTTTTTTT+AGG - chr3.1:12816651-12816670 MS.gene039878:CDS 30.0%
AAAATCCAAAATCCCTGCTT+CGG + chr3.1:12816376-12816395 None:intergenic 35.0%
ATCAGATTTATCCATTGTGC+TGG + chr3.1:12816252-12816271 None:intergenic 35.0%
ATTTCATCACCTCATGGTAA+TGG - chr3.1:12815979-12815998 MS.gene039878:CDS 35.0%
GAACAGGAATCAAATCTGAA+TGG - chr3.1:12816744-12816763 MS.gene039878:CDS 35.0%
TAAAATGGCTGGATTTGTGA+AGG - chr3.1:12816974-12816993 MS.gene039878:CDS 35.0%
TCAAGCAATTATCGAATCGA+TGG - chr3.1:12816182-12816201 MS.gene039878:CDS 35.0%
TTAAGAAAGATCCCCATCTT+AGG + chr3.1:12816684-12816703 None:intergenic 35.0%
! AAGAGGTGATAATGCTGAAT+CGG + chr3.1:12816646-12816665 None:intergenic 35.0%
! AAGGTACCTTTGAGTTACAA+TGG - chr3.1:12816993-12817012 MS.gene039878:CDS 35.0%
! ACTTATTTCAGTGAAGCACT+TGG - chr3.1:12816018-12816037 MS.gene039878:CDS 35.0%
! AGGTACCTTTGAGTTACAAT+GGG - chr3.1:12816994-12817013 MS.gene039878:CDS 35.0%
! CAAACTTTAAAGAAACGTCC+GGG - chr3.1:12816273-12816292 MS.gene039878:CDS 35.0%
! CATTTTGCACACTCAATAAG+AGG + chr3.1:12815904-12815923 None:intergenic 35.0%
! TGAAGACGATGATATTTTCG+AGG + chr3.1:12816091-12816110 None:intergenic 35.0%
! TTGAGAGCTTTATATACACC+AGG + chr3.1:12816066-12816085 None:intergenic 35.0%
!! GATCGAGCATTGTACTTTTA+CGG - chr3.1:12816789-12816808 MS.gene039878:CDS 35.0%
!! TGGTAATGGTGTACAAAGAA+TGG - chr3.1:12815993-12816012 MS.gene039878:CDS 35.0%
!!! CAGACCACTTTTTTCTGTAT+CGG - chr3.1:12817106-12817125 MS.gene039878:CDS 35.0%
ATCCTCCCATTGTAACTCAA+AGG + chr3.1:12817002-12817021 None:intergenic 40.0%
CACTCAATAAGAGGGATCAT+TGG + chr3.1:12815895-12815914 None:intergenic 40.0%
CTTTGTACACCATTACCATG+AGG + chr3.1:12815991-12816010 None:intergenic 40.0%
TCTCAGATTTCATCACCTCA+TGG - chr3.1:12815973-12815992 MS.gene039878:CDS 40.0%
TGTGCAAAATGTGTTGCATC+TGG - chr3.1:12815913-12815932 MS.gene039878:CDS 40.0%
TTAGGTGCTTCACCTAAGAT+GGG - chr3.1:12816669-12816688 MS.gene039878:CDS 40.0%
TTCATTTGACAACCGAAGCA+GGG - chr3.1:12816361-12816380 MS.gene039878:CDS 40.0%
TTTAGGTGCTTCACCTAAGA+TGG - chr3.1:12816668-12816687 MS.gene039878:CDS 40.0%
TTTCATTTGACAACCGAAGC+AGG - chr3.1:12816360-12816379 MS.gene039878:CDS 40.0%
! AGAGGTGATAATGCTGAATC+GGG + chr3.1:12816645-12816664 None:intergenic 40.0%
! GGTGAAGCACCTAAAAAAAG+AGG + chr3.1:12816663-12816682 None:intergenic 40.0%
! TACCTTTGAGTTACAATGGG+AGG - chr3.1:12816997-12817016 MS.gene039878:CDS 40.0%
! TCTTGCCACTGATGATGAAA+TGG - chr3.1:12816509-12816528 MS.gene039878:CDS 40.0%
!! ATTTATCCATTGTGCTGGCT+CGG + chr3.1:12816247-12816266 None:intergenic 40.0%
AATTCCCTCAGCCAGTGATA+TGG + chr3.1:12815847-12815866 None:intergenic 45.0%
AGGGAGTCGATAGAAAGGAA+AGG - chr3.1:12816919-12816938 MS.gene039878:CDS 45.0%
ATCGATGGAACGTGAAAAGG+TGG - chr3.1:12816197-12816216 MS.gene039878:CDS 45.0%
CAACTCAGCTGTTATGCACT+AGG - chr3.1:12815817-12815836 MS.gene039878:CDS 45.0%
CAGGCCGATACAGAAAAAAG+TGG + chr3.1:12817113-12817132 None:intergenic 45.0%
CGAATCGATGGAACGTGAAA+AGG - chr3.1:12816194-12816213 MS.gene039878:CDS 45.0%
GAAAACTTGCCTGTCAAGAC+AGG - chr3.1:12816444-12816463 MS.gene039878:CDS 45.0%
GGAGACCATTTCATCATCAG+TGG + chr3.1:12816517-12816536 None:intergenic 45.0%
TAGGTGCTTCACCTAAGATG+GGG - chr3.1:12816670-12816689 MS.gene039878:CDS 45.0%
TTGTGAGGGAGTCGATAGAA+AGG - chr3.1:12816914-12816933 MS.gene039878:CDS 45.0%
! AAACTCGAGAGCATGCTTCT+TGG - chr3.1:12816867-12816886 MS.gene039878:CDS 45.0%
! ACTTTAAAGAAACGTCCGGG+AGG - chr3.1:12816276-12816295 MS.gene039878:CDS 45.0%
! CCTGTAATTTTCAGATGGGG+CGG + chr3.1:12816303-12816322 None:intergenic 45.0%
! CTGTATCGGCCTGGAAATTT+AGG - chr3.1:12817120-12817139 MS.gene039878:CDS 45.0%
!!! CACTTTTTTCTGTATCGGCC+TGG - chr3.1:12817111-12817130 MS.gene039878:CDS 45.0%
!!! CGGTTCACTTTTTGACTGCT+TGG - chr3.1:12816809-12816828 MS.gene039878:CDS 45.0%
ATGCATAGAGCAGCGCACAT+GGG - chr3.1:12816561-12816580 MS.gene039878:CDS 50.0%
ATTGTTCCGAGCCAGCACAA+TGG - chr3.1:12816238-12816257 MS.gene039878:CDS 50.0%
CACTAGGTTCGCCATATCAC+TGG - chr3.1:12815833-12815852 MS.gene039878:CDS 50.0%
CCGCCCCATCTGAAAATTAC+AGG - chr3.1:12816300-12816319 MS.gene039878:CDS 50.0%
GATGAAATGGTCTCCTCAGC+AGG - chr3.1:12816522-12816541 MS.gene039878:CDS 50.0%
TATGCATAGAGCAGCGCACA+TGG - chr3.1:12816560-12816579 MS.gene039878:CDS 50.0%
! GACAACCGAAGCAGGGATTT+TGG - chr3.1:12816368-12816387 MS.gene039878:CDS 50.0%
! TTCGCCATATCACTGGCTGA+GGG - chr3.1:12815840-12815859 MS.gene039878:CDS 50.0%
!! ATTGTGCTGGCTCGGAACAA+TGG + chr3.1:12816239-12816258 None:intergenic 50.0%
ACAGCGTCTCCTGTCTTGAC+AGG + chr3.1:12816456-12816475 None:intergenic 55.0%
GATAGATGTCGCACCTGCTG+AGG + chr3.1:12816538-12816557 None:intergenic 55.0%
GGCATGAGAAGCTCGAGCAA+TGG - chr3.1:12816940-12816959 MS.gene039878:CDS 55.0%
GTCAGAGGACTTTCGCAGAG+TGG - chr3.1:12816583-12816602 MS.gene039878:CDS 55.0%
! GTTCGCCATATCACTGGCTG+AGG - chr3.1:12815839-12815858 MS.gene039878:CDS 55.0%
GAGCAGCGCACATGGGTCAG+AGG - chr3.1:12816568-12816587 MS.gene039878:CDS 65.0%
TTCAGATGGGGCGGACCTCC+CGG + chr3.1:12816294-12816313 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 12815814 12817145 12815814 ID=MS.gene039878
chr3.1 mRNA 12815814 12817145 12815814 ID=MS.gene039878.t1;Parent=MS.gene039878
chr3.1 exon 12815814 12817145 12815814 ID=MS.gene039878.t1.exon1;Parent=MS.gene039878.t1
chr3.1 CDS 12815814 12817145 12815814 ID=cds.MS.gene039878.t1;Parent=MS.gene039878.t1
Gene Sequence

>MS.gene039878

ATGCAACTCAGCTGTTATGCACTAGGTTCGCCATATCACTGGCTGAGGGAATTGAGATATGACTCTCAGAGCTCAAATCCAATGATCCCTCTTATTGAGTGTGCAAAATGTGTTGCATCTGGAAGCATAAAAAATGCTGATATTGGACTTGAGTATATTTCTCAGATTTCATCACCTCATGGTAATGGTGTACAAAGAATGGTAACTTATTTCAGTGAAGCACTTGGATACAAGATAGTTAAACATTTACCTGGTGTATATAAAGCTCTCAATTCCTCGAAAATATCATCGTCTTCAGATGATATCCTTGTTCAAAAATACTTCTATGATCTGTGTCCTTTTTTGAAGTTTTCATACCTGATCACAAATCAAGCAATTATCGAATCGATGGAACGTGAAAAGGTGGTTCATATTATCGATCTCCATTGTTCCGAGCCAGCACAATGGATAAATCTGATACAAACTTTAAAGAAACGTCCGGGAGGTCCGCCCCATCTGAAAATTACAGGAATTCATGAAAAGAAAGAAGTATTGGAGCAAATGAGCTTTCATTTGACAACCGAAGCAGGGATTTTGGATTTTCCGTTACAGTTCAATCCAATAATTAGCAAACTTGAAGATGTCGATTTCGAAAACTTGCCTGTCAAGACAGGAGACGCTGTCGCAATTTCTTCTGTTCTTCAGCTGCATTCTCTTCTTGCCACTGATGATGAAATGGTCTCCTCAGCAGGTGCGACATCTATCAATATGCATAGAGCAGCGCACATGGGTCAGAGGACTTTCGCAGAGTGGCTAGAGAGAGACATGATCAATGCATATATCTTGAGTCCCGATTCAGCATTATCACCTCTTTTTTTAGGTGCTTCACCTAAGATGGGGATCTTTCTTAACGCTATGCGAAAACTACAACCGAAACTTTTAGTGATTACTGAACAGGAATCAAATCTGAATGGATGTAATTTAATGGAGAGAATCGATCGAGCATTGTACTTTTACGGTTCACTTTTTGACTGCTTGGAATCTACTGTTACGAGAACATCAGTCGAGAGACAAAAACTCGAGAGCATGCTTCTTGGAGAGCAAATAAAGAACATCATTACTTGTGAGGGAGTCGATAGAAAGGAAAGGCATGAGAAGCTCGAGCAATGGATTCAAAGACTTAAAATGGCTGGATTTGTGAAGGTACCTTTGAGTTACAATGGGAGGATAGAAGCGACAAATCTATTGCAGCGATATAGTCATAAATACAAGTTTAAAGAAGAAAATGATTGTTTACTTGTTTGTTGGAGTGACAGACCACTTTTTTCTGTATCGGCCTGGAAATTTAGGTGA
Protein sequence

>MS.gene039878.t1

MQLSCYALGSPYHWLRELRYDSQSSNPMIPLIECAKCVASGSIKNADIGLEYISQISSPHGNGVQRMVTYFSEALGYKIVKHLPGVYKALNSSKISSSSDDILVQKYFYDLCPFLKFSYLITNQAIIESMEREKVVHIIDLHCSEPAQWINLIQTLKKRPGGPPHLKITGIHEKKEVLEQMSFHLTTEAGILDFPLQFNPIISKLEDVDFENLPVKTGDAVAISSVLQLHSLLATDDEMVSSAGATSINMHRAAHMGQRTFAEWLERDMINAYILSPDSALSPLFLGASPKMGIFLNAMRKLQPKLLVITEQESNLNGCNLMERIDRALYFYGSLFDCLESTVTRTSVERQKLESMLLGEQIKNIITCEGVDRKERHEKLEQWIQRLKMAGFVKVPLSYNGRIEATNLLQRYSHKYKFKEENDCLLVCWSDRPLFSVSAWKFR